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Advances in Making Cancer Mouse Models More Accessible and Informative through Non-Germline Genetic Engineering. 通过非血缘基因工程使癌症小鼠模型更易获得和更有信息量的进展。
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-01 DOI: 10.1101/cshperspect.a041348
Katherine C Murphy, Marcus Ruscetti

Genetically engineered mouse models (GEMMs) allow for modeling of spontaneous tumorigenesis within its native microenvironment in mice and have provided invaluable insights into mechanisms of tumorigenesis and therapeutic strategies to treat human disease. However, as their generation requires germline manipulation and extensive animal breeding that is time-, labor-, and cost-intensive, traditional GEMMs are not accessible to most researchers, and fail to model the full breadth of cancer-associated genetic alterations and therapeutic targets. Recent advances in genome-editing technologies and their implementation in somatic tissues of mice have ushered in a new class of mouse models: non-germline GEMMs (nGEMMs). nGEMM approaches can be leveraged to generate somatic tumors de novo harboring virtually any individual or group of genetic alterations found in human cancer in a mouse through simple procedures that do not require breeding, greatly increasing the accessibility and speed and scale on which GEMMs can be produced. Here we describe the technologies and delivery systems used to create nGEMMs and highlight new biological insights derived from these models that have rapidly informed functional cancer genomics, precision medicine, and immune oncology.

基因工程小鼠模型(GEMMs)可以模拟小鼠在原生微环境中的自发肿瘤发生过程,为研究肿瘤发生机制和治疗人类疾病的策略提供了宝贵的见解。然而,由于生成 GEMMs 需要进行种系操作和大量动物饲养,耗费大量时间、人力和成本,因此大多数研究人员无法利用传统的 GEMMs,也无法模拟癌症相关基因改变和治疗靶点的全部范围。基因组编辑技术的最新进展及其在小鼠体细胞组织中的应用开创了一类新的小鼠模型:非种系GEMMs(nGEMMs)。nGEMM方法可以通过无需繁殖的简单程序,在小鼠体内从头生成几乎包含人类癌症中发现的任何单个或一组基因改变的体细胞肿瘤,从而大大提高了生产GEMMs的可及性、速度和规模。在此,我们将介绍用于创建 nGEMMs 的技术和传输系统,并重点介绍从这些模型中获得的新生物学见解,这些见解已迅速为癌症功能基因组学、精准医学和免疫肿瘤学提供了信息。
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引用次数: 0
Iron, Copper, and Selenium: Cancer's Thing for Redox Bling. 铁、铜和硒:癌症的红细胞闪烁。
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-01 DOI: 10.1101/cshperspect.a041545
Erdem M Terzi, Richard Possemato

Cells require micronutrients for numerous basic functions. Among these, iron, copper, and selenium are particularly critical for redox metabolism, and their importance is heightened during oncogene-driven perturbations in cancer. In this review, which particularly focuses on iron, we describe how these micronutrients are carefully chaperoned about the body and made available to tissues, a process that is designed to limit the toxicity of free iron and copper or by-products of selenium metabolism. We delineate perturbations in iron metabolism and iron-dependent proteins that are observed in cancer, and describe the current approaches being used to target iron metabolism and iron-dependent processes.

细胞需要微量营养素来发挥多种基本功能。其中,铁、铜和硒对氧化还原代谢特别关键,在癌症中,它们在致癌物驱动的扰动中的重要性得到了提高。在这篇特别关注铁的综述中,我们描述了这些微量营养素是如何被小心地陪伴在身体周围并提供给组织的,这一过程旨在限制游离铁和铜或硒代谢副产物的毒性。我们描述了在癌症中观察到的铁代谢和铁依赖性蛋白质的扰动,并描述了目前用于靶向铁代谢和铁依赖性过程的方法。
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引用次数: 0
The Power and Promise of Patient-Derived Xenografts of Human Breast Cancer. 源于患者的人类乳腺癌异种移植物的力量和前景。
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-01 DOI: 10.1101/cshperspect.a041329
Michael T Lewis, Carlos Caldas

In 2016, a group of researchers engaged in the development of patient-derived xenografts (PDXs) of human breast cancer provided a comprehensive review of the state of the field. In that review, they summarized the clinical problem that PDXs might address, the technical approaches to their generation (including a discussion of host animals and transplant conditions tested), and presented transplantation success (take) rates across groups and across transplantation conditions. At the time, there were just over 500 unique PDX models created by these investigators representing all three clinically defined subtypes (ER+, HER2+, and TNBC). Today, many of these PDX resources have at least doubled in size, and several more PDX development groups now exist, such that there may be well upward of 1000 PDX models of human breast cancer in existence worldwide. They also presented a series of open questions for the field. Many of these questions have been addressed. However, several remain open, or only partially addressed. Herein, we revisit these questions, and recount the progress that has been made in a number of areas with respect to generation, characterization, and use of PDXs in translational research, and re-present questions that remain open. These open questions, and others, are now being addressed not only by individual investigators, but also large, well-funded consortia including the PDXNet program of the National Cancer Institute in the United States, and the EuroPDX Consortium, an organization of PDX developers across Europe. Finally, we discuss the new opportunities in PDX-based research.

2016 年,一组从事人类乳腺癌患者衍生异种移植物(PDXs)开发的研究人员对该领域的现状进行了全面回顾。在该综述中,他们总结了PDXs可能解决的临床问题、生成PDXs的技术方法(包括对宿主动物和移植条件测试的讨论),并介绍了不同组别和不同移植条件下的移植成功率。当时,由这些研究人员创建的独特 PDX 模型刚刚超过 500 个,代表了所有三种临床定义的亚型(ER+、HER2+ 和 TNBC)。如今,许多 PDX 资源的规模至少翻了一番,而且现在又有了几个 PDX 开发小组,因此全球现有的人类乳腺癌 PDX 模型可能远远超过 1000 个。他们还为该领域提出了一系列开放性问题。其中许多问题已经得到解决。然而,有几个问题仍未解决,或仅得到部分解决。在此,我们将重新审视这些问题,回顾在转化研究中生成、表征和使用 PDX 方面取得的进展,并再次提出仍未解决的问题。目前,不仅个别研究人员在解决这些未决问题,而且包括美国国家癌症研究所的 PDXNet 计划和欧洲 PDX 开发者组织 EuroPDX Consortium 在内的资金雄厚的大型联盟也在解决这些问题。最后,我们将讨论基于 PDX 研究的新机遇。
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引用次数: 0
From the Inside Out: Exposing the Roles of Urea Cycle Enzymes in Tumors and Their Micro and Macro Environments. 由内而外:揭示尿素循环酶在肿瘤及其微观和宏观环境中的作用。
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-01 DOI: 10.1101/cshperspect.a041538
Emma Hajaj, Sabina Pozzi, Ayelet Erez

Catabolic pathways change in anabolic diseases such as cancer to maintain metabolic homeostasis. The liver urea cycle (UC) is the main catabolic pathway for disposing excess nitrogen. Outside the liver, the UC enzymes are differentially expressed based on each tissue's needs for UC intermediates. In tumors, there are changes in the expression of UC enzymes selected for promoting tumorigenesis by increasing the availability of essential UC substrates and products. Consequently, there are compensatory changes in the expression of UC enzymes in the cells that compose the tumor microenvironment. Moreover, extrahepatic tumors induce changes in the expression of the liver UC, which contribute to the systemic manifestations of cancer, such as weight loss. Here, we review the multilayer changes in the expression of UC enzymes throughout carcinogenesis. Understanding the changes in UC expression in the tumor and its micro and macro environment can help identify biomarkers for early cancer diagnosis and vulnerabilities that can be targeted for therapy.

在癌症等合成代谢性疾病中,分解代谢途径会发生变化,以维持代谢平衡。肝脏尿素循环(UC)是处理多余氮的主要分解代谢途径。在肝脏外,尿素循环酶会根据各组织对尿素循环中间产物的需求进行不同的表达。在肿瘤中,UC 酶的表达发生了变化,这些酶通过增加必需的 UC 底物和产物的可用性来促进肿瘤发生。因此,组成肿瘤微环境的细胞中 UC 酶的表达也会发生补偿性变化。此外,肝外肿瘤会引起肝脏 UC 表达的变化,从而导致癌症的全身表现,如体重减轻。在此,我们回顾了整个癌变过程中 UC 酶表达的多层变化。了解肿瘤及其微观和宏观环境中 UC 表达的变化,有助于确定早期癌症诊断的生物标志物和可用于靶向治疗的薄弱环节。
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引用次数: 0
Pig Models in Retinal Research and Retinal Disease. 视网膜研究和视网膜疾病中的猪模型。
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-01 DOI: 10.1101/cshperspect.a041296
Maureen A McCall

The pig has been used as a large animal model in biomedical research for many years and its use continues to increase because induced mutations phenocopy several inherited human diseases. In addition, they are continuous breeders, can be propagated by artificial insemination, have large litter sizes (on the order of mice), and can be genetically manipulated using all of the techniques that are currently available in mice. The pioneering work of Petters and colleagues set the stage for the use of the pig as a model of inherited retinal disease. In the last 10 years, the pig has become a model of choice where specific disease-causing mutations that are not phenocopied in rodents need to be studied and therapeutic approaches explored. The pig is not only used for retinal eye disease but also for the study of the cornea and lens. This review attempts to show how broad the use of the pig has become and how it has contributed to the assessment of treatments for eye disease. In the last 10 years, there have been several reviews that included the use of the pig in biomedical research (see body of the review) that included information about retinal disease. None directly discuss the use of the pig as an animal model for retinal diseases, including inherited diseases, where a single genetic mutation has been identified or for multifactorial diseases such as glaucoma and diabetic retinopathy. Although the pig is used to explore diseases of the cornea and lens, this review focuses on how and why the pig, as a large animal model, is useful for research in neural retinal disease and its treatment.

多年来,猪一直被用作生物医学研究中的大型动物模型,而且其使用量还在继续增加,因为猪的诱导突变表现了几种人类遗传疾病。此外,猪可以连续饲养,可以通过人工授精繁殖,产仔数大(与小鼠相当),而且可以使用目前用于小鼠的所有技术进行遗传操作。Petters 及其同事的开创性工作为利用猪作为遗传性视网膜疾病的模型奠定了基础。在过去的 10 年中,猪已成为研究啮齿类动物不能表征的特定致病突变和探索治疗方法的首选模型。猪不仅可用于视网膜眼病的研究,还可用于角膜和晶状体的研究。本综述试图说明猪的使用范围有多么广泛,以及它如何为评估眼病的治疗方法做出了贡献。在过去 10 年中,有几篇综述介绍了猪在生物医学研究中的应用(见综述正文),其中包括有关视网膜疾病的信息。其中没有一篇直接讨论将猪用作视网膜疾病的动物模型,包括已发现单一基因突变的遗传性疾病或青光眼和糖尿病视网膜病变等多因素疾病。虽然猪被用来研究角膜和晶状体疾病,但本综述的重点是猪作为一种大型动物模型,如何以及为什么对神经视网膜疾病及其治疗的研究有用。
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引用次数: 0
Pediatric Cancer Drug Development: Leveraging Insights in Cancer Biology and the Evolving Regulatory Landscape to Address Challenges and Guide Further Progress. 儿科癌症药物开发:利用对癌症生物学和不断变化的监管环境的深入了解,应对挑战并指导进一步的进展。
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-01 DOI: 10.1101/cshperspect.a041656
Rosane Charlab, Ruby Leong, Stacy S Shord, Gregory H Reaman

The discovery and development of anticancer drugs for pediatric patients have historically languished when compared to both past and recent activity in drug development for adult patients, notably the dramatic spike of targeted and immune-oncology therapies. The reasons for this difference are multifactorial. Recent changes in the regulatory landscape surrounding pediatric cancer drug development and the understanding that some pediatric cancers are driven by genetic perturbations that also drive disparate adult cancers afford new opportunities. The unique cancer-initiating events and dependencies of many pediatric cancers, however, require additional pediatric-specific strategies. Research efforts to unravel the underlying biology of pediatric cancers, innovative clinical trial designs, model-informed drug development, extrapolation from adult data, addressing the unique considerations in pediatric patients, and use of pediatric appropriate formulations, should all be considered for efficient development and dosage optimization of anticancer drugs for pediatric patients.

与过去和近期针对成人患者的药物研发活动相比,尤其是靶向疗法和免疫肿瘤疗法的急剧飙升,针对儿科患者的抗癌药物的发现和开发历来处于徘徊不前的状态。造成这种差异的原因是多方面的。最近,儿科癌症药物开发的监管环境发生了变化,而且人们认识到一些儿科癌症是由基因扰动引起的,而这些基因扰动也会导致不同的成人癌症,这为儿科癌症药物开发提供了新的机遇。然而,许多儿科癌症独特的癌症诱发事件和依赖性需要更多的儿科特异性策略。为了高效开发和优化用于儿科患者的抗癌药物剂量,应考虑开展以下方面的研究工作:揭示儿科癌症的潜在生物学特性、创新的临床试验设计、以模型为依据的药物开发、从成人数据中进行外推,解决儿科患者的独特考虑因素,以及使用适合儿科的制剂。
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引用次数: 0
Acute Promyelocytic Leukemia, Retinoic Acid, and Arsenic: A Tale of Dualities 急性早幼粒细胞白血病、维甲酸和砷:双重性的故事
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-19 DOI: 10.1101/cshperspect.a041582
Domitille Rérolle, Hsin-Chieh Wu, Hugues de Thé
Acute promyelocytic leukemia (APL) is driven by the promyelocytic leukemia (PML)/retinoic acid receptor α (RARA) fusion oncoprotein. Over the years, it has emerged as a model system to understand how this simple (and sometimes sole) genetic alteration can transform hematopoietic progenitors through the acquisition of dominant-negative properties toward both transcriptional control by nuclear receptors and PML-mediated senescence. The fortuitous identification of two drugs, arsenic trioxide (ATO) and all-trans-retinoic acid (ATRA), that respectively bind PML and RARA to initiate PML/RARA degradation, has allowed an unprecedented dissection of the cellular and molecular mechanisms involved in patients’ cure by the ATO/ATRA combination. This analysis has unraveled the dual and complementary roles of RARA and PML in both APL initiation and cure by the ATRA/ATO combination. We discuss how some of the features unraveled by APL studies may be more broadly applicable to some other forms of leukemia. In particular, the functional synergy between drugs that promote differentiation and those that initiate apoptosis/senescence to impede self-renewal could pave the way to novel curative combinations.
急性早幼粒细胞白血病(APL)是由早幼粒细胞白血病(PML)/视黄酸受体α(RARA)融合肿瘤蛋白驱动的。多年来,它已成为一个模型系统,用于了解这种简单(有时是唯一)的基因改变如何通过获得显性阴性特性来改变造血祖细胞,从而实现核受体转录控制和 PML 介导的衰老。三氧化二砷(ATO)和全反式维甲酸(ATRA)这两种药物可分别与 PML 和 RARA 结合,从而启动 PML/RARA 降解,这两种药物的偶然发现使我们得以对 ATO/ATRA 联合疗法治愈患者所涉及的细胞和分子机制进行前所未有的剖析。这项分析揭示了 RARA 和 PML 在 APL 启动和 ATRA/ATO 联合疗法治愈过程中的双重互补作用。我们讨论了 APL 研究揭示的一些特征如何更广泛地适用于其他形式的白血病。特别是,促进分化的药物与启动凋亡/衰老以阻碍自我更新的药物之间的功能协同作用可能会为新型治疗组合铺平道路。
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引用次数: 0
Addressing Biological Questions with Preclinical Cancer Imaging 利用临床前癌症成像解决生物学问题
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-19 DOI: 10.1101/cshperspect.a041378
Chris B. Damoci, Joseph R. Merrill, Yanping Sun, Scott K. Lyons, Kenneth P. Olive
The broad application of noninvasive imaging has transformed preclinical cancer research, providing a powerful means to measure dynamic processes in living animals. While imaging technologies are routinely used to monitor tumor growth in model systems, their greatest potential lies in their ability to answer fundamental biological questions. Here we present the broad range of potential imaging applications according to the needs of a cancer biologist with a focus on some of the common biological processes that can be used to visualize and measure. Topics include imaging metastasis; biophysical properties such as perfusion, diffusion, oxygenation, and stiffness; imaging the immune system and tumor microenvironment; and imaging tumor metabolism. We also discuss the general ability of each approach and the level of training needed to both acquire and analyze images. The overall goal is to provide a practical guide for cancer biologists interested in answering biological questions with preclinical imaging technologies.
无创成像技术的广泛应用改变了临床前癌症研究,为测量活体动物的动态过程提供了强有力的手段。虽然成像技术通常用于监测模型系统中的肿瘤生长,但其最大的潜力在于能够回答基本的生物学问题。在此,我们将根据癌症生物学家的需求,介绍广泛的潜在成像应用,并重点介绍一些可用于可视化和测量的常见生物过程。主题包括转移成像;生物物理特性,如灌注、扩散、氧合作用和硬度;免疫系统和肿瘤微环境成像;以及肿瘤新陈代谢成像。我们还讨论了每种方法的一般能力以及获取和分析图像所需的培训水平。总体目标是为有意利用临床前成像技术回答生物学问题的癌症生物学家提供实用指南。
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引用次数: 0
Knowledge-Based Therapeutics for Tricarboxylic Acid (TCA) Cycle-Deficient Cancers 基于知识的三羧酸 (TCA) 循环缺陷癌症疗法
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-19 DOI: 10.1101/cshperspect.a041536
Daniel Peled, Ruth Casey, Eyal Gottlieb
With the foundation pre-laid, research in the new millennium has readily excavated and expanded upon the architectural framework laid out by Otto Warburg's seminal work in a new wave of “westward expansion,” ever widening our understanding of cancer metabolism beyond the telescopic vision seen over a century ago. On this path, the unique circuitry of the cancer metabolic program has been elucidated, illuminating mutations of conserved cellular pathways implicated in tumorigenesis. Paramount among these are mutations in tricarboxylic acid cycle enzymes, succinate dehydrogenase, and fumarate hydratase, leading to deleterious accumulations in metabolic intermediates, “oncometabolites,” the pilots of the disease process. In this work, we seek to reflect on the advancements in the field in recent years, updating knowledge on the exact biochemical mechanisms at the helm of the tumor, providing rationale for clinical trials currently underway, and anticipating directions for the future on this expansive frontier.
有了预先奠定的基础,新千年的研究在新一轮 "西进 "浪潮中对奥托-沃伯格的开创性工作所奠定的建筑框架进行了挖掘和扩展,不断拓宽我们对癌症代谢的认识,超越了一个多世纪前的望远镜视野。在这条道路上,我们阐明了癌症代谢程序的独特回路,揭示了与肿瘤发生有关的保守细胞通路的突变。其中最重要的是三羧酸循环酶、琥珀酸脱氢酶和富马酸氢化酶的突变,这些突变导致了代谢中间产物 "代谢产物 "的有害累积,是疾病进程的先导。在这篇论文中,我们试图回顾近年来该领域取得的进展,更新有关肿瘤的确切生化机制的知识,为目前正在进行的临床试验提供理论依据,并预测这一广阔前沿领域的未来发展方向。
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引用次数: 0
Tracing the Diverse Paths of One-Carbon Metabolism in Cancer and Beyond 追踪一碳代谢在癌症及其他疾病中的不同路径
IF 5.4 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-19 DOI: 10.1101/cshperspect.a041533
Esther W. Lim, Christian M. Metallo
One-carbon (1C) metabolism is a network of biochemical reactions distributed across organelles that delivers folate-activated 1C units to support macromolecule synthesis, methylation, and reductive homeostasis. Fluxes through these pathways are up-regulated in highly proliferative cancer cells, and anti-folates, which target enzymes within the 1C pathway, have long been used in the treatment of cancer. In this work, we review fundamental aspects of 1C metabolism and place it in context with other biosynthetic and redox pathways, such that 1C metabolism acts to bridge pathways across compartments. We further discuss the importance of stable-isotope-tracing techniques combined with mass spectrometry analysis to study 1C metabolism and conclude by highlighting therapeutic approaches that could exploit cancer cells’ dependency on 1C metabolism.
一碳(1C)代谢是一个分布于细胞器的生化反应网络,它提供叶酸激活的 1C 单位,以支持大分子合成、甲基化和还原平衡。在高度增殖的癌细胞中,通过这些途径的通量会上调,而针对 1C 途径中的酶的抗叶酸盐长期以来一直被用于治疗癌症。在这项工作中,我们回顾了 1C 代谢的基本方面,并将其与其他生物合成和氧化还原途径联系起来,这样,1C 代谢就成了跨区的桥梁。我们进一步讨论了稳定同位素追踪技术与质谱分析相结合对研究 1C 代谢的重要性,最后强调了可利用癌细胞对 1C 代谢依赖性的治疗方法。
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引用次数: 0
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