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Exploring Parkinson's through the Lens of Genomics and Bioinformatics. 通过基因组学和生物信息学的视角探索帕金森病。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-10 DOI: 10.1101/cshperspect.a041621
Vilas Menon

Within the last three decades, revolutions in genomics data generation and bioinformatics analysis techniques have profoundly impacted our understanding of the molecular mechanisms of Parkinson's disease (PD). From the description of the first PD-associated risk gene in 1997 through today, new technologies have revolutionized approaches to identify genetic and molecular mechanisms implicated in human health and disease. Spurred by the dramatically decreasing costs for genotyping, genome sequencing, and transcriptomics approaches, the ability to profile large cohorts of human populations or model organisms has accelerated the understanding of disease susceptibility, pathways, and genes. Thus far, ∼30 genetic loci have been unequivocally linked to the pathogenesis of PD, highlighting essential molecular pathways underlying this common disorder. More recently, the advent of single-cell transcriptomics techniques applied to human brain tissue has implicated cell-type-specific dysregulation and vulnerability (beyond the loss of dopaminergic neurons) in the disease. Herein, we discuss how neurogenomics and bioinformatics are applied to dissect the nature of this complex disease with the overall aim of identifying new targets for therapeutic interventions.

在过去的三十年里,基因组学数据生成和生物信息学分析技术的革命深刻地影响了我们对帕金森病(PD)分子机制的理解。从1997年第一个pd相关风险基因的描述到今天,新技术已经彻底改变了识别与人类健康和疾病有关的遗传和分子机制的方法。在基因分型、基因组测序和转录组学方法成本急剧下降的推动下,对大量人类群体或模式生物进行分析的能力加快了对疾病易感性、途径和基因的理解。到目前为止,大约有30个基因位点与PD的发病机制明确相关,强调了这种常见疾病的基本分子途径。最近,应用于人脑组织的单细胞转录组学技术的出现暗示了该疾病中细胞类型特异性失调和易感性(超出多巴胺能神经元的丧失)。在此,我们讨论如何应用神经基因组学和生物信息学来剖析这种复杂疾病的本质,以确定治疗干预的新靶点。
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引用次数: 0
Progression in Parkinson's Disease. 帕金森病的进展。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-10 DOI: 10.1101/cshperspect.a041641
Krithi Irmady, Serge Przedborski

Parkinson's disease (PD) is a common neurodegenerative disorder characterized by relentlessly progressive motor and nonmotor clinical features. In this paper, we offer a comprehensive overview of progression in PD, covering the heterogeneous symptomatology crucial for monitoring progression from clinical, pathological, and biomarker perspectives. We also discuss prevailing theories concerning the underlying pathobiology driving progression in PD and summarize the literature on emerging biomarkers that are expected to facilitate early prognosis and effective monitoring of disease progression.

帕金森病(PD)是一种常见的神经退行性疾病,其特征是不断进行性的运动和非运动临床特征。在本文中,我们提供了PD进展的全面概述,涵盖了从临床、病理和生物标志物角度监测PD进展的异质性症状学。我们还讨论了有关PD潜在病理生物学进展的主流理论,并总结了有关新兴生物标志物的文献,这些生物标志物有望促进疾病进展的早期预后和有效监测。
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引用次数: 0
T Cell Differentiation in Autoimmune Type 1 Diabetes. 自身免疫性1型糖尿病的T细胞分化
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-10 DOI: 10.1101/cshperspect.a041592
Andrea Schietinger, Ian T McBain, Katrina M Hawley, Svetlana Miakicheva

Type 1 diabetes (T1D) is a progressive T cell-mediated autoimmune disease that results from the breakdown of tolerance mechanisms in β-cell-specific T cells. Although CD8 T cells are primarily responsible for the destruction of insulin-producing β cells, intriguingly, HLA class II allelic polymorphisms confer the greatest genetic risk for the development of T1D, suggesting a critical role of CD4 T cells in disease initiation and progression. Many aspects of autoimmune T cell differentiation remain enigmatic, including where and how autoimmune CD8 and CD4 T cells arise, which molecular programs control autoimmune T cell differentiation, and how CD8 T cells sustain β-cell destruction in the face of persistent self-antigen encounter. In this work, we summarize our current understanding of β-cell-specific CD8 and CD4 T cell differentiation and function, the role of autoimmune stem-like progenitor CD8 T cells in initiating and sustaining disease, and molecular programs and key transcription factors associated with the diabetogenic T cell response.

1型糖尿病(T1D)是一种进行性T细胞介导的自身免疫性疾病,由β细胞特异性T细胞耐受机制的破坏引起。虽然CD8 T细胞主要负责破坏产生胰岛素的β细胞,但有趣的是,HLA II类等位基因多态性赋予T1D发展的最大遗传风险,这表明CD4 T细胞在疾病的发生和进展中起着关键作用。自身免疫T细胞分化的许多方面仍然是谜,包括自身免疫CD8和CD4 T细胞在哪里以及如何产生,哪些分子程序控制自身免疫T细胞分化,以及CD8 T细胞在面对持续的自身抗原遭遇时如何维持β细胞破坏。在这项工作中,我们总结了我们目前对β细胞特异性CD8和CD4 T细胞分化和功能的理解,自身免疫干细胞样祖细胞CD8 T细胞在启动和维持疾病中的作用,以及与糖尿病性T细胞反应相关的分子程序和关键转录因子。
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引用次数: 0
Adoptive Cell Therapy for Pediatric Solid Tumors. 儿童实体瘤的过继细胞治疗。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-10 DOI: 10.1101/cshperspect.a041636
Amy B Hont, Catherine M Bollard

Patients with relapsed or refractory pediatric solid tumors have limited therapeutic options with little to no appreciable improvements in outcomes in over two decades. Adoptive cell therapy (ACT) is a promising, targeted option for patients with the potential to minimize acute and long-term toxicities. In this review, we (1) characterize the development and manufacture different ACT approaches used for pediatric solid tumors, and (2) discuss the obstacles when targeting and treating solid tumors. The outcomes of the clinical applications of the various cell therapy products are also reviewed along with the future potential, including novel product development and combination therapies. In sum, this review serves as a comprehensive review of the clinical trial results evaluating the safety, feasibility, and efficacy of novel cell therapy products in the clinic for the treatment of pediatric solid tumors and seeks to provide new insights regarding ACT successes, failures, and challenges to benefit a rapidly expanding immunotherapy field.

复发或难治性儿童实体瘤患者的治疗选择有限,在过去的二十年中几乎没有明显的改善。过继细胞疗法(ACT)是一种很有前途的、有针对性的选择,可以最大限度地减少急性和长期毒性。在这篇综述中,我们(1)描述了用于儿童实体肿瘤的不同ACT方法的开发和制造,(2)讨论了靶向和治疗实体肿瘤时的障碍。对各种细胞治疗产品的临床应用结果以及未来的潜力进行了回顾,包括新产品的开发和联合治疗。总而言之,本综述对临床试验结果进行了全面回顾,评估了新型细胞治疗产品在临床治疗儿童实体瘤的安全性、可行性和有效性,并试图就ACT的成功、失败和挑战提供新的见解,以造福于迅速扩大的免疫治疗领域。
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引用次数: 0
Type 1 Diabetes: Advances in Understanding and Treatment 100 Years after the Discovery of Insulin. 1型糖尿病:胰岛素发现100年后的认识和治疗进展。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-10 DOI: 10.1101/cshperspect.a041843
Jeffrey A Bluestone, Kevan C Herold, Lori Sussel

Type 1 diabetes is an autoimmune condition in which the pancreatic β cells that produce insulin are destroyed by the body's immune system. For 100 years, diet and insulin injections have been the only effective treatment. Recent advances have led to significant progress in our understanding of the pathogenesis of the disease and the interplay between the environment, components of the immune system, and the β cells that are targeted. This has led to new therapies that rebalance the immune system and finally offer the promise of a cure.

1型糖尿病是一种自身免疫性疾病,产生胰岛素的胰腺β细胞被人体免疫系统破坏。100年来,饮食和注射胰岛素一直是唯一有效的治疗方法。最近的进展使我们对疾病的发病机制以及环境、免疫系统成分和靶向β细胞之间的相互作用的理解取得了重大进展。这导致了重新平衡免疫系统的新疗法,并最终提供了治愈的希望。
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引用次数: 0
Clinical Immunologic Interventions for the Treatment of Type 1 Diabetes: Challenges, Choice, and Timing of Immunomodulators. 治疗1型糖尿病的临床免疫干预:免疫调节剂的挑战、选择和时机。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-10 DOI: 10.1101/cshperspect.a041597
Danijela Tatovic, Colin Dayan

Replacement insulin therapy has been the mainstay of type 1 diabetes mellitus (T1D) treatment ever since its introduction into clinical care more than 100 years ago. Despite advances in delivery methods, insulin remains a challenging medication. It is, therefore, not surprising that most people with T1D do not achieve optimal glycemic control and remain at risk of complications. The recent introduction of teplizumab as the first immunotherapy for T1D has ushered in an exciting era where the focus is shifted from metabolic replacement therapy with insulin to proactive disease-modifying treatments that prevent the loss of insulin secretory capacity. At least nine other clinical immunologic interventions have shown phase 2 trial efficacy in preserving β-cell function in T1D. To translate these findings to patient benefit, many changes are required. These include improvements in end points and trial design to accelerate drug development, changing the attitude of healthcare professionals toward novel strategies, and the development of effective screening programs to identify affected individuals in early-stage disease. This will enable a broad portfolio of β-cell preserving therapies to be approved, in turn allowing appropriate selection of immunomodulators tailored to an individual's response with an ultimate goal of "insulin-free T1D."

自100多年前引入临床护理以来,替代胰岛素疗法一直是1型糖尿病(T1D)治疗的主要方法。尽管输送方法有所进步,胰岛素仍然是一种具有挑战性的药物。因此,大多数T1D患者无法达到最佳血糖控制并仍有并发症的风险,这并不奇怪。最近推出的teplizumab作为T1D的第一种免疫疗法,迎来了一个令人兴奋的时代,重点从胰岛素代谢替代疗法转移到预防胰岛素分泌能力丧失的主动疾病改善治疗。至少有9种其他临床免疫干预措施在2期试验中显示出保护T1D中β细胞功能的有效性。为了将这些发现转化为患者的利益,需要进行许多改变。这些包括终点和试验设计的改进,以加速药物开发,改变医疗保健专业人员对新策略的态度,以及开发有效的筛选程序,以识别早期疾病的受影响个体。这将使广泛的β细胞保存疗法组合获得批准,进而允许根据个体反应适当选择免疫调节剂,最终实现“无胰岛素T1D”的目标。
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引用次数: 0
A History of Cancer Research: The P53 Pathway. 癌症研究的历史:P53通路。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 DOI: 10.1101/cshperspect.a035931
Joseph Lipsick

The p53 tumor suppressor was first identified as a cellular protein that bound to the large T antigen in SV40-transformed cells. Initially thought to be the product of an oncogene, p53 turned out to be an anticancer protein whose loss or mutation could promote tumorigenesis. Subsequent work revealed it functions as a DNA-binding transcription factor central to the DNA damage response and cell cycle control. In this excerpt from his forthcoming book on the history of cancer research, Joe Lipsick looks back at the discovery of p53 and the groundbreaking work that revealed its role as "guardian of the genome."

p53肿瘤抑制因子首先被发现是一种细胞蛋白,在sv40转化的细胞中与大T抗原结合。p53最初被认为是致癌基因的产物,后来被证明是一种抗癌蛋白,其缺失或突变可能促进肿瘤的发生。随后的研究表明,它是DNA结合转录因子,对DNA损伤反应和细胞周期控制至关重要。在他即将出版的关于癌症研究历史的书的节选中,乔·利普西克回顾了p53的发现以及揭示其“基因组守护者”作用的开创性工作。
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引用次数: 0
Corrigendum: Modeling Parkinson's Disease in Primates. 更正:模拟灵长类动物的帕金森病。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 DOI: 10.1101/cshperspect.a041802
Erwan Bezard, Margaux Teil, Marie-Laure Arotcarena, Gregory Porras, Qin Li, Benjamin Dehay
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引用次数: 0
Modeling Parkinson's Disease in Primates. 灵长类动物的帕金森病模型
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 DOI: 10.1101/cshperspect.a041612
Erwan Bezard, Margaux Teil, Marie-Laure Arotcarena, Gregory Porras, Qin Li, Benjamin Dehay

Decades of research have identified the pathological and pathophysiological hallmarks of Parkinson's disease (PD): profound deficit in brain dopamine and other monoamines, pathological α-synuclein aggregation, synaptic and neuronal network dysfunction, aberrant proteostasis, altered energy homeostasis, inflammation, and neuronal cell death. The purpose of this contribution is to present the phenocopy aspect, pathogenic, and etiologic nonhuman primate (NHP) models of PD to readers with limited prior knowledge of PD so that they are ready to start working on PD. How NHPs, the closest species to man on which we can model diseases, contribute to the knowledge progress and how these models represent an invaluable translational step in therapeutic development are highlighted.

数十年的研究已经确定了帕金森病(PD)的病理和病理生理学特征:大脑多巴胺和其他单胺类物质的严重缺乏、病理性α-突触核蛋白聚集、突触和神经元网络功能障碍、异常蛋白稳态、能量稳态改变、炎症和神经细胞死亡。本文旨在向对帕金森病了解有限的读者介绍帕金森病的表型方面、致病性和病因学非人灵长类动物(NHP)模型,以便他们做好准备开始研究帕金森病。非人灵长类动物是最接近人类的物种,我们可以在它们身上建立疾病模型,重点介绍非人灵长类动物如何促进知识进步,以及这些模型如何代表治疗开发中宝贵的转化步骤。
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引用次数: 0
Metabolic Signaling in Cancer. 癌症中的代谢信号
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 DOI: 10.1101/cshperspect.a041544
Laura V Pinheiro, Pedro Costa-Pinheiro, Kathryn E Wellen

Metabolic reprogramming in cancer allows cells to survive in harsh environments and sustain macromolecular biosynthesis to support proliferation. In addition, metabolites play crucial roles as signaling molecules. Metabolite fluctuations are detected by various sensors in the cell to regulate gene expression, metabolism, and signal transduction. Metabolic signaling mechanisms contribute to tumorigenesis by altering the physiology of cancer cells themselves, as well as that of neighboring cells in the tumor microenvironment. In this review, we discuss principles of metabolic signaling and provide examples of how cancer cells take advantage of metabolic signals to promote cell proliferation and evade the immune system, thereby contributing to tumor growth and progression.

癌症中的代谢重编程可使细胞在恶劣环境中存活,并维持大分子生物合成以支持增殖。此外,代谢物作为信号分子发挥着至关重要的作用。细胞中的各种传感器可检测到代谢物的波动,从而调节基因表达、新陈代谢和信号转导。代谢信号机制通过改变癌细胞本身以及肿瘤微环境中邻近细胞的生理机能,促进肿瘤发生。在这篇综述中,我们将讨论代谢信号转导的原理,并举例说明癌细胞如何利用代谢信号促进细胞增殖和逃避免疫系统,从而促进肿瘤的生长和进展。
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引用次数: 0
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Cold Spring Harbor perspectives in medicine
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