首页 > 最新文献

CPT: Pharmacometrics & Systems Pharmacology最新文献

英文 中文
Population pharmacokinetic analysis of zastaprazan (JP-1366), a novel potassium-competitive acid blocker, in patients and healthy volunteers 新型钾竞争性酸阻滞剂扎司他拉赞(JP-1366)在患者和健康志愿者中的群体药代动力学分析。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-13 DOI: 10.1002/psp4.13228
Eunsol Yang, Inyoung Hwang, Sang Chun Ji, John Kim, SeungHwan Lee

Zastaprazan (JP-1366) is a novel potassium-competitive acid blocker for the treatment of acid-related disorders. We aimed to establish a population pharmacokinetic (PK) model of zastaprazan, thereby characterizing the PK of zastaprazan in patients with gastroesophageal reflux disease (GERD) as well as evaluating the impact of various covariates, including CYP2C19 phenotypes, on zastaprazan PK. This population PK analysis included zastaprazan plasma concentration–time data from 92 patients with erosive GERD and 68 healthy volunteers without any gastrointestinal disorders and was performed using nonlinear mixed-effect modeling. Simulations were conducted to predict zastaprazan PK under various dosing regimens in patients with GERD. The plasma PK of zastaprazan was adequately described by a two-compartment model with Erlang-type absorption (six sequential compartments) and first-order elimination. CYP2C19 phenotypes had no significant effect on zastaprazan PK. The disease status was identified as a significant covariate on apparent clearance of zastaprazan, showing lower values in patients with GERD compared to healthy volunteers. However, the model-based simulation indicated that the impact of disease status on zastaprazan exposure was not clinically meaningful. Overall, the current population PK model successfully characterized the observed zastaprazan PK in both patients with GERD and healthy volunteers.

Zastaprazan(JP-1366)是一种新型钾竞争性酸阻滞剂,用于治疗酸相关疾病。我们的目的是建立扎司他普赞的群体药代动力学(PK)模型,从而确定胃食管反流病(GERD)患者体内扎司他普赞的PK特征,并评估包括CYP2C19表型在内的各种协变量对扎司他普赞PK的影响。该人群 PK 分析包括 92 名侵蚀性胃食管反流病患者和 68 名无任何胃肠道疾病的健康志愿者的扎斯他拉赞血浆浓度-时间数据,并使用非线性混合效应模型进行了分析。模拟预测了胃食管反流病患者在不同给药方案下的扎斯他拉赞 PK 值。二室模型充分描述了扎斯他拉赞的血浆PK,该模型具有二朗型吸收(六个连续室)和一阶消除。CYP2C19表型对扎司他嗪的PK无明显影响。疾病状态是影响扎司他普赞表观清除率的一个重要协变量,与健康志愿者相比,胃食管反流病患者的表观清除率较低。然而,基于模型的模拟表明,疾病状态对扎司他赞暴露量的影响并无临床意义。总之,目前的群体 PK 模型成功地描述了胃食管反流病患者和健康志愿者体内观察到的扎斯他拉赞 PK 值。
{"title":"Population pharmacokinetic analysis of zastaprazan (JP-1366), a novel potassium-competitive acid blocker, in patients and healthy volunteers","authors":"Eunsol Yang,&nbsp;Inyoung Hwang,&nbsp;Sang Chun Ji,&nbsp;John Kim,&nbsp;SeungHwan Lee","doi":"10.1002/psp4.13228","DOIUrl":"10.1002/psp4.13228","url":null,"abstract":"<p>Zastaprazan (JP-1366) is a novel potassium-competitive acid blocker for the treatment of acid-related disorders. We aimed to establish a population pharmacokinetic (PK) model of zastaprazan, thereby characterizing the PK of zastaprazan in patients with gastroesophageal reflux disease (GERD) as well as evaluating the impact of various covariates, including CYP2C19 phenotypes, on zastaprazan PK. This population PK analysis included zastaprazan plasma concentration–time data from 92 patients with erosive GERD and 68 healthy volunteers without any gastrointestinal disorders and was performed using nonlinear mixed-effect modeling. Simulations were conducted to predict zastaprazan PK under various dosing regimens in patients with GERD. The plasma PK of zastaprazan was adequately described by a two-compartment model with Erlang-type absorption (six sequential compartments) and first-order elimination. CYP2C19 phenotypes had no significant effect on zastaprazan PK. The disease status was identified as a significant covariate on apparent clearance of zastaprazan, showing lower values in patients with GERD compared to healthy volunteers. However, the model-based simulation indicated that the impact of disease status on zastaprazan exposure was not clinically meaningful. Overall, the current population PK model successfully characterized the observed zastaprazan PK in both patients with GERD and healthy volunteers.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"13 12","pages":"2150-2158"},"PeriodicalIF":3.1,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/psp4.13228","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142281633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A model-based approach using GSK3772847, an anti-interleukin-33 receptor monoclonal antibody, as a showcase to predict SC administration PK and free target dynamics based on PK and total target measurements after IV administration 以抗白细胞介素-33 受体单克隆抗体 GSK3772847 为展示品,采用基于模型的方法,根据静脉注射后的 PK 和总目标测量值预测静脉注射 PK 和游离目标动态。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-11 DOI: 10.1002/psp4.13234
Jan Berkhout, Dave Fairman, Martijn van Noort, Tamara J. van Steeg

Integrated modeling of the pharmacokinetic (PK) and target binding, by means of a TMDD model, can provide valuable insights into the expected pharmacodynamic (PD) effects of monoclonal antibodies (mAbs). Optimal characterization of the human PK and target binding for mAbs requires data obtained after intravenous (IV) administration which can be combined with subcutaneous (SC) data to further this characterization. Integration of free and/or total target measurements in a population TMDD model will allow quantification of target engagement which is the first step in the cascade leading to efficacy. However, the assays for determination of free target concentrations are analytically challenging and are inherently biased to overpredict the true concentrations in the presence of mAb:target complexes. For that reason, the objective of the current research was to evaluate the predictive value of free target concentrations in a TMDD model developed using PK and total target observations only. Further, a secondary objective was to demonstrate that prediction of SC data is feasible, based on an existing IV model and typical values of mAb parameters reported for SC absorption. GSK3772847, a human immunoglobulin G2 sigma isotype (IgG2f) mAb that binds to the extracellular domain of the interleukin-33 receptor (IL-33R or ST2) and neutralizes IL-33-mediated ST2 signaling, was used as a model compound for mAbs in this study.

通过 TMDD 模型对药物动力学(PK)和靶点结合进行综合建模,可以为了解单克隆抗体(mAbs)的预期药效学(PD)效应提供有价值的见解。人体 PK 和 mAbs 靶点结合的最佳表征需要静脉注射(IV)后获得的数据,这些数据可与皮下注射(SC)数据相结合以进一步表征。在群体 TMDD 模型中整合游离靶标和/或总靶标测量值,就能量化靶标结合,而靶标结合是导致疗效的级联反应的第一步。然而,测定游离靶标浓度的检测方法在分析上极具挑战性,而且在存在 mAb:靶标复合物的情况下,这种检测方法本身就存在偏差,会高估真实浓度。因此,当前研究的目的是评估游离靶标浓度在仅使用 PK 和总靶标观察结果开发的 TMDD 模型中的预测价值。此外,研究的另一个目的是根据现有的 IV 模型和已报道的用于 SC 吸收的 mAb 参数的典型值,证明 SC 数据的预测是可行的。GSK3772847 是一种人免疫球蛋白 G2 sigma 异型 (IgG2f) mAb,它能与白细胞介素-33 受体(IL-33R 或 ST2)的胞外结构域结合并中和 IL-33 介导的 ST2 信号传导,在本研究中被用作 mAb 的模型化合物。
{"title":"A model-based approach using GSK3772847, an anti-interleukin-33 receptor monoclonal antibody, as a showcase to predict SC administration PK and free target dynamics based on PK and total target measurements after IV administration","authors":"Jan Berkhout,&nbsp;Dave Fairman,&nbsp;Martijn van Noort,&nbsp;Tamara J. van Steeg","doi":"10.1002/psp4.13234","DOIUrl":"10.1002/psp4.13234","url":null,"abstract":"<p>Integrated modeling of the pharmacokinetic (PK) and target binding, by means of a TMDD model, can provide valuable insights into the expected pharmacodynamic (PD) effects of monoclonal antibodies (mAbs). Optimal characterization of the human PK and target binding for mAbs requires data obtained after intravenous (IV) administration which can be combined with subcutaneous (SC) data to further this characterization. Integration of free and/or total target measurements in a population TMDD model will allow quantification of target engagement which is the first step in the cascade leading to efficacy. However, the assays for determination of free target concentrations are analytically challenging and are inherently biased to overpredict the true concentrations in the presence of mAb:target complexes. For that reason, the objective of the current research was to evaluate the predictive value of free target concentrations in a TMDD model developed using PK and total target observations only. Further, a secondary objective was to demonstrate that prediction of SC data is feasible, based on an existing IV model and typical values of mAb parameters reported for SC absorption. GSK3772847, a human immunoglobulin G2 sigma isotype (IgG2f) mAb that binds to the extracellular domain of the interleukin-33 receptor (IL-33R or ST2) and neutralizes IL-33-mediated ST2 signaling, was used as a model compound for mAbs in this study.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"14 1","pages":"17-27"},"PeriodicalIF":3.1,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11706423/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142281620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Population pharmacokinetics of amodiaquine and piperaquine in African pregnant women with uncomplicated Plasmodium falciparum infections 感染无并发症恶性疟原虫的非洲孕妇体内阿莫地喹和哌喹的群体药代动力学。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-03 DOI: 10.1002/psp4.13211
Junjie Ding, Richard M. Hoglund, Harry Tagbor, Halidou Tinto, Innocent Valéa, Victor Mwapasa, Linda Kalilani-Phiri, Jean-Pierre Van Geertruyden, Michael Nambozi, Modest Mulenga, Sebastian Hachizovu, Raffaella Ravinetto, Umberto D'Alessandro, Joel Tarning

Artemisinin-based combination therapy (ACT) is the first-line recommended treatment for uncomplicated malaria. Pharmacokinetic (PK) properties in pregnant women are often based on small studies and need to be confirmed and validated in larger pregnant patient populations. This study aimed to evaluate the PK properties of amodiaquine and its active metabolite, desethylamodiaquine, and piperaquine in women in their second and third trimester of pregnancy with uncomplicated P. falciparum infections. Eligible pregnant women received either artesunate-amodiaquine (200/540 mg daily, n = 771) or dihydroartemisinin-piperaquine (40/960 mg daily, n = 755) for 3 days (NCT00852423). Population PK properties were evaluated using nonlinear mixed-effects modeling, and effect of gestational age and trimester was evaluated as covariates. 1071 amodiaquine and 1087 desethylamodiaquine plasma concentrations, and 976 piperaquine plasma concentrations, were included in the population PK analysis. Amodiaquine concentrations were described accurately with a one-compartment disposition model followed by a two-compartment disposition model of desethylamodiaquine. The relative bioavailability of amodiaquine increased with gestational age (1.25% per week). The predicted exposure to desethylamodiaquine was 2.8%–32.2% higher in pregnant women than that reported in non-pregnant women, while day 7 concentrations were comparable. Piperaquine concentrations were adequately described by a three-compartment disposition model. Neither gestational age nor trimester had significant impact on the PK of piperaquine. The predicted exposure and day 7 concentrations of piperaquine were similar to that reported in non-pregnant women. In conclusion, the exposure to desethylamodiaquine and piperaquine was similar to that in non-pregnant women. Dose adjustment is not warranted for women in their second and their trimester of pregnancy.

青蒿素类复方疗法(ACT)是治疗无并发症疟疾的一线推荐疗法。孕妇的药代动力学(PK)特性通常基于小型研究,需要在更大的孕妇群体中进行确认和验证。本研究旨在评估阿莫地喹及其活性代谢物去甲阿莫地喹和哌喹在感染无并发症恶性疟原虫的第二和第三孕期妇女中的药代动力学特性。符合条件的孕妇接受青蒿琥酯-阿莫地喹(每天 200/540 毫克,n = 771)或双氢青蒿素-哌喹(每天 40/960 毫克,n = 755)治疗 3 天(NCT00852423)。使用非线性混合效应模型评估了人群 PK 特性,并将胎龄和孕期的影响作为协变量进行了评估。1071例阿莫地喹和1087例去乙基阿莫地喹血浆浓度以及976例哌喹血浆浓度被纳入人群PK分析。阿莫地喹的浓度用一室处置模型进行了精确描述,随后又用去甲阿莫地喹的二室处置模型进行了精确描述。阿莫地喹的相对生物利用度随孕龄的增加而增加(每周增加 1.25%)。据预测,孕妇的去甲阿莫地喹暴露量比非孕妇高出 2.8%-32.2%,而第 7 天的浓度相当。哌喹的浓度可通过三室处置模型进行充分描述。妊娠年龄和孕期对哌喹的 PK 均无显著影响。哌喹的预测暴露量和第7天的浓度与非孕妇的报告相似。总之,去甲阿莫地喹和哌喹的暴露量与非妊娠妇女相似。妊娠中期和妊娠三个月的妇女无需调整剂量。
{"title":"Population pharmacokinetics of amodiaquine and piperaquine in African pregnant women with uncomplicated Plasmodium falciparum infections","authors":"Junjie Ding,&nbsp;Richard M. Hoglund,&nbsp;Harry Tagbor,&nbsp;Halidou Tinto,&nbsp;Innocent Valéa,&nbsp;Victor Mwapasa,&nbsp;Linda Kalilani-Phiri,&nbsp;Jean-Pierre Van Geertruyden,&nbsp;Michael Nambozi,&nbsp;Modest Mulenga,&nbsp;Sebastian Hachizovu,&nbsp;Raffaella Ravinetto,&nbsp;Umberto D'Alessandro,&nbsp;Joel Tarning","doi":"10.1002/psp4.13211","DOIUrl":"10.1002/psp4.13211","url":null,"abstract":"<p>Artemisinin-based combination therapy (ACT) is the first-line recommended treatment for uncomplicated malaria. Pharmacokinetic (PK) properties in pregnant women are often based on small studies and need to be confirmed and validated in larger pregnant patient populations. This study aimed to evaluate the PK properties of amodiaquine and its active metabolite, desethylamodiaquine, and piperaquine in women in their second and third trimester of pregnancy with uncomplicated <i>P. falciparum</i> infections. Eligible pregnant women received either artesunate-amodiaquine (200/540 mg daily, <i>n</i> = 771) or dihydroartemisinin-piperaquine (40/960 mg daily, <i>n</i> = 755) for 3 days (NCT00852423). Population PK properties were evaluated using nonlinear mixed-effects modeling, and effect of gestational age and trimester was evaluated as covariates. 1071 amodiaquine and 1087 desethylamodiaquine plasma concentrations, and 976 piperaquine plasma concentrations, were included in the population PK analysis. Amodiaquine concentrations were described accurately with a one-compartment disposition model followed by a two-compartment disposition model of desethylamodiaquine. The relative bioavailability of amodiaquine increased with gestational age (1.25% per week). The predicted exposure to desethylamodiaquine was 2.8%–32.2% higher in pregnant women than that reported in non-pregnant women, while day 7 concentrations were comparable. Piperaquine concentrations were adequately described by a three-compartment disposition model. Neither gestational age nor trimester had significant impact on the PK of piperaquine. The predicted exposure and day 7 concentrations of piperaquine were similar to that reported in non-pregnant women. In conclusion, the exposure to desethylamodiaquine and piperaquine was similar to that in non-pregnant women. Dose adjustment is not warranted for women in their second and their trimester of pregnancy.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"13 11","pages":"1893-1903"},"PeriodicalIF":3.1,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/psp4.13211","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142124989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Understanding the mechanisms of food effect on omaveloxolone pharmacokinetics through physiologically based biopharmaceutics modeling 通过基于生理学的生物药剂学建模,了解食物对奥马韦洛酮药代动力学的影响机制。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-02 DOI: 10.1002/psp4.13221
Xavier J. H. Pepin, Scott M. Hynes, Hamim Zahir, Deborah Walker, Lois Q. Semmens, Sandra Suarez-Sharp

Omaveloxolone is a nuclear factor (erythroid-derived 2)-like 2 activator approved in the United States and the European Union for the treatment of patients with Friedreich ataxia aged ≥16 years, with a recommended dosage of 150 mg orally once daily on an empty stomach. The effect of the US Food and Drug Administration (FDA) high-fat breakfast on the pharmacokinetic profile of omaveloxolone observed in study 408-C-1703 (NCT03664453) deviated from the usual linear correlation between fed/fasted maximum plasma concentration (Cmax) and area under the concentration–time curve (AUC) ratios reported for various oral drugs across 323 food effect studies. Here, physiologically based biopharmaceutics modeling (PBBM) was implemented to predict and explain the effect of the FDA high-fat breakfast on a 150-mg dose of omaveloxolone. The model was developed and validated based on dissolution and pharmacokinetic data available across dose-ranging, food effect, and drug–drug interaction clinical studies. PBBM predictions support clinical observations of the unique effect of a high-fat meal on omaveloxolone pharmacokinetic profile, in which the Cmax increased by 350% with only a 15% increase in the AUC. Key parameters influencing omaveloxolone pharmacokinetics in the fasted state based on a parameter sensitivity analysis included bile salt solubilization, CYP3A4 activity, drug substance particle size distribution, and permeability. Mechanistically, in vivo omaveloxolone absorption was solubility and dissolution rate limited. However, in the fed state, higher bile salt solubilization led to more rapid dissolution with predominant absorption in the upper gastrointestinal tract, resulting in increased susceptibility to first-pass gut extraction; this accounts for the lack of correlation between Cmax and AUC for omaveloxolone.

Omaveloxolone 是一种核因子(红细胞衍生 2)样 2 激活剂,已在美国和欧盟获得批准,用于治疗年龄≥16 岁的弗里德里希共济失调患者,推荐剂量为 150 毫克,每天一次,空腹口服。在 408-C-1703 研究(NCT03664453)中观察到的美国食品药品管理局(FDA)高脂早餐对奥马韦洛酮药代动力学特征的影响偏离了 323 项食物效应研究中报告的各种口服药物进食/空腹最大血浆浓度(Cmax)与浓度-时间曲线下面积(AUC)比率之间的通常线性相关关系。在此,我们采用基于生理学的生物药剂学模型(PBBM)来预测和解释 FDA 高脂早餐对 150 毫克剂量奥马韦洛酮的影响。该模型是根据剂量范围、食物效应和药物相互作用临床研究中可用的溶出和药代动力学数据开发和验证的。PBBM 预测结果支持高脂餐对奥马韦洛酮药代动力学特征独特影响的临床观察结果,其中 Cmax 增加了 350%,而 AUC 仅增加了 15%。根据参数敏感性分析,空腹状态下影响奥马韦洛酮药代动力学的关键参数包括胆盐溶解度、CYP3A4活性、药物粒度分布和渗透性。从机理上讲,体内奥马韦洛酮的吸收受到溶解度和溶解速率的限制。然而,在进食状态下,较高的胆盐溶解度会导致更快的溶解,主要在上消化道吸收,从而增加了肠道首过提取的敏感性;这就是为什么奥马韦洛酮的 Cmax 和 AUC 之间缺乏相关性的原因。
{"title":"Understanding the mechanisms of food effect on omaveloxolone pharmacokinetics through physiologically based biopharmaceutics modeling","authors":"Xavier J. H. Pepin,&nbsp;Scott M. Hynes,&nbsp;Hamim Zahir,&nbsp;Deborah Walker,&nbsp;Lois Q. Semmens,&nbsp;Sandra Suarez-Sharp","doi":"10.1002/psp4.13221","DOIUrl":"10.1002/psp4.13221","url":null,"abstract":"<p>Omaveloxolone is a nuclear factor (erythroid-derived 2)-like 2 activator approved in the United States and the European Union for the treatment of patients with Friedreich ataxia aged ≥16 years, with a recommended dosage of 150 mg orally once daily on an empty stomach. The effect of the US Food and Drug Administration (FDA) high-fat breakfast on the pharmacokinetic profile of omaveloxolone observed in study 408-C-1703 (NCT03664453) deviated from the usual linear correlation between fed/fasted maximum plasma concentration (<i>C</i><sub>max</sub>) and area under the concentration–time curve (AUC) ratios reported for various oral drugs across 323 food effect studies. Here, physiologically based biopharmaceutics modeling (PBBM) was implemented to predict and explain the effect of the FDA high-fat breakfast on a 150-mg dose of omaveloxolone. The model was developed and validated based on dissolution and pharmacokinetic data available across dose-ranging, food effect, and drug–drug interaction clinical studies. PBBM predictions support clinical observations of the unique effect of a high-fat meal on omaveloxolone pharmacokinetic profile, in which the <i>C</i><sub>max</sub> increased by 350% with only a 15% increase in the AUC. Key parameters influencing omaveloxolone pharmacokinetics in the fasted state based on a parameter sensitivity analysis included bile salt solubilization, CYP3A4 activity, drug substance particle size distribution, and permeability. Mechanistically, in vivo omaveloxolone absorption was solubility and dissolution rate limited. However, in the fed state, higher bile salt solubilization led to more rapid dissolution with predominant absorption in the upper gastrointestinal tract, resulting in increased susceptibility to first-pass gut extraction; this accounts for the lack of correlation between <i>C</i><sub>max</sub> and AUC for omaveloxolone.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"13 10","pages":"1771-1783"},"PeriodicalIF":3.1,"publicationDate":"2024-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11494823/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142105168","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Population PK modeling of certolizumab pegol in pregnant women with chronic inflammatory diseases 慢性炎症性疾病孕妇使用曲妥珠单抗 pegol 的人群 PK 模型。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-01 DOI: 10.1002/psp4.13220
Denis Menshykau, Jagdev Sidhu, Laura Shaughnessy, Rocio Lledo-Garcia, Pinky Dua, Marie Teil, Akash Khandelwal

Certolizumab pegol (CZP; CIMZIA™) is the only Fc-free tumor necrosis factor inhibitor with data from a clinical study demonstrating no to minimal placental transfer. The pharmacokinetics (PK) of certolizumab pegol during pregnancy and postpartum in women with chronic inflammatory diseases were assessed using a population PK model based on data from the CHERISH study (NCT04163016), a longitudinal, prospective, open-label PK phase IB study. Model development was performed in NONMEM using a frequentist prior approach, with prior information based on a population PK model for certolizumab pegol in non-pregnant adult patients (NCT04740814). A one-compartment model with first-order absorption (Ka = 0.236 1/day) and linear elimination (CL/F = 0.416 L/day) from the central compartment (V/F = 7.86 L) best described certolizumab pegol PK in the CHERISH study. The structural model parameters were estimated with good precision (RSE < 25%). Baseline BW was included as a covariate on CL/F and V/F. Pregnancy trimester and time-varying log-transformed anti-drug antibody (ADA) titer were identified as the only significant covariates for CL/F with a comparable influence on CL/F. Individuals with higher ADA titer (75th percentile) during pregnancy exhibited CL/F up to 1.43-fold higher relative to individuals postpartum that showed median levels of ADA titer. However, the confidence interval for the combined effect of pregnancy stage and ADA titer effects on CL/F overlapped with the CL/F range of the typical individual postpartum. In addition, simulations showed a large overlap in certolizumab pegol concentrations between pregnant and non-pregnant adults. The findings of this population PK analysis support the maintenance of established certolizumab pegol dosing regimens throughout pregnancy.

Certolizumab pegol (CZP; CIMZIA™)是唯一不含Fc的肿瘤坏死因子抑制剂,临床研究数据显示它不会或极少发生胎盘转移。该研究是一项纵向、前瞻性、开放标签 PK IB 期研究,根据 CHERISH 研究(NCT04163016)的数据,使用群体 PK 模型评估了患有慢性炎症的妇女在妊娠期和产后使用曲妥珠单抗 pegol 的药代动力学(PK)。模型的建立是在 NONMEM 中采用频繁先验法进行的,先验信息基于非妊娠期成年患者的群PK模型(NCT04740814)。一室模型具有一阶吸收(Ka = 0.236 1/天)和从中心室(V/F = 7.86 L)线性消除(CL/F = 0.416 L/天)的特点,该模型对CHERISH研究中的certolizumab pegol PK进行了最佳描述。结构模型参数的估计精度很高(RSE
{"title":"Population PK modeling of certolizumab pegol in pregnant women with chronic inflammatory diseases","authors":"Denis Menshykau,&nbsp;Jagdev Sidhu,&nbsp;Laura Shaughnessy,&nbsp;Rocio Lledo-Garcia,&nbsp;Pinky Dua,&nbsp;Marie Teil,&nbsp;Akash Khandelwal","doi":"10.1002/psp4.13220","DOIUrl":"10.1002/psp4.13220","url":null,"abstract":"<p>Certolizumab pegol (CZP; CIMZIA™) is the only Fc-free tumor necrosis factor inhibitor with data from a clinical study demonstrating no to minimal placental transfer. The pharmacokinetics (PK) of certolizumab pegol during pregnancy and postpartum in women with chronic inflammatory diseases were assessed using a population PK model based on data from the CHERISH study (NCT04163016), a longitudinal, prospective, open-label PK phase IB study. Model development was performed in NONMEM using a frequentist prior approach, with prior information based on a population PK model for certolizumab pegol in non-pregnant adult patients (NCT04740814). A one-compartment model with first-order absorption (<i>K</i><sub>a</sub> = 0.236 1/day) and linear elimination (CL/F = 0.416 L/day) from the central compartment (V/F = 7.86 L) best described certolizumab pegol PK in the CHERISH study. The structural model parameters were estimated with good precision (RSE &lt; 25%). Baseline BW was included as a covariate on CL/F and V/F. Pregnancy trimester and time-varying log-transformed anti-drug antibody (ADA) titer were identified as the only significant covariates for CL/F with a comparable influence on CL/F. Individuals with higher ADA titer (75th percentile) during pregnancy exhibited CL/F up to 1.43-fold higher relative to individuals postpartum that showed median levels of ADA titer. However, the confidence interval for the combined effect of pregnancy stage and ADA titer effects on CL/F overlapped with the CL/F range of the typical individual postpartum. In addition, simulations showed a large overlap in certolizumab pegol concentrations between pregnant and non-pregnant adults. The findings of this population PK analysis support the maintenance of established certolizumab pegol dosing regimens throughout pregnancy.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"13 11","pages":"1904-1914"},"PeriodicalIF":3.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/psp4.13220","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142105167","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Population pharmacokinetics and exposure–response analyses of safety (ARIA-E and isolated ARIA-H) of lecanemab in subjects with early Alzheimer's disease 对早期阿尔茨海默氏症患者进行的来卡尼单抗群体药代动力学和暴露-反应安全性分析(ARIA-E 和单独的 ARIA-H)。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-08-29 DOI: 10.1002/psp4.13224
Oneeb Majid, Youfang Cao, Brian A. Willis, Seiichi Hayato, Osamu Takenaka, Bojan Lalovic, Sree Harsha Sreerama Reddy, Natasha Penner, Larisa Reyderman, Sanae Yasuda, Ziad Hussein

Lecanemab (Leqembi®) was recently approved by health authorities in the United States, Japan, and China to treat early Alzheimer's disease (AD), including patients with mild cognitive impairment (MCI) or mild dementia due to Alzheimer's disease upon confirmation of amyloid beta pathology. Extensively and sparsely sampled PK profiles from 1619 AD subjects and 21,929 serum lecanemab observations from two phase I, one phase II, and one phase III studies were well characterized using a two-compartment model with first-order elimination. The final PK model quantified covariate effects of body weight and sex on clearance and central volume of distribution, ADA-positive status, and albumin on clearance, and of Japanese ethnicity on central and peripheral volumes of distribution. Exposure to lecanemab was comparable between two lecanemab-manufacturing processes. However, none of the identified covariates in the model had a clinically relevant impact on model-predicted lecanemab Cmax or AUC at steady state following 10 mg/kg bi-weekly. Importantly, age, a well-recognized risk factor for AD, was not found to significantly affect lecanemab PK. The incidence of ARIA-E as a function of lecanemab exposure was modeled using a logit function with data pooled from 2641 subjects from the phase II and phase III studies, in which a total of 177 incidences of ARIA-E were observed. The probability of ARIA-E was significantly correlated with model-predicted Cmax and predicted to be higher in subjects homozygous for APOE4. The incidence of isolated ARIA-H was not associated with lecanemab exposure and was similar between placebo and lecanemab-treated subjects.

莱卡单抗(Leqembi®)最近获得了美国、日本和中国卫生部门的批准,用于治疗早期阿尔茨海默病(AD),包括在确认淀粉样蛋白 beta 病理后的轻度认知障碍(MCI)或轻度阿尔茨海默病患者。利用一阶消除的二室模型,对来自两项I期、一项II期和一项III期研究的1619名AD受试者和21929份血清莱卡尼单抗观察结果的广泛和稀疏取样PK曲线进行了很好的表征。最终的 PK 模型量化了体重和性别对清除率和中心分布容积的协变量效应、ADA 阳性状态和白蛋白对清除率的协变量效应,以及日裔对中心分布容积和外周分布容积的协变量效应。两种莱卡奈单抗生产工艺的莱卡奈单抗暴露量相当。然而,在模型中确定的协变量中,没有一个对模型预测的莱卡奈单抗Cmax或AUC有临床意义的影响,即每两周10毫克/千克。重要的是,年龄这一公认的AD风险因素并未对莱卡尼单抗的PK产生显著影响。ARIA-E的发生率与莱卡奈单抗的暴露量呈函数关系,采用Logit函数对来自II期和III期研究的2641名受试者的数据进行了建模,共观察到177例ARIA-E发生率。ARIA-E的发生概率与模型预测的Cmax显著相关,并预测APOE4同源受试者的ARIA-E发生率较高。孤立ARIA-H的发生率与来卡尼单抗暴露无关,安慰剂和来卡尼单抗治疗受试者的发生率相似。
{"title":"Population pharmacokinetics and exposure–response analyses of safety (ARIA-E and isolated ARIA-H) of lecanemab in subjects with early Alzheimer's disease","authors":"Oneeb Majid,&nbsp;Youfang Cao,&nbsp;Brian A. Willis,&nbsp;Seiichi Hayato,&nbsp;Osamu Takenaka,&nbsp;Bojan Lalovic,&nbsp;Sree Harsha Sreerama Reddy,&nbsp;Natasha Penner,&nbsp;Larisa Reyderman,&nbsp;Sanae Yasuda,&nbsp;Ziad Hussein","doi":"10.1002/psp4.13224","DOIUrl":"10.1002/psp4.13224","url":null,"abstract":"<p>Lecanemab (Leqembi®) was recently approved by health authorities in the United States, Japan, and China to treat early Alzheimer's disease (AD), including patients with mild cognitive impairment (MCI) or mild dementia due to Alzheimer's disease upon confirmation of amyloid beta pathology. Extensively and sparsely sampled PK profiles from 1619 AD subjects and 21,929 serum lecanemab observations from two phase I, one phase II, and one phase III studies were well characterized using a two-compartment model with first-order elimination. The final PK model quantified covariate effects of body weight and sex on clearance and central volume of distribution, ADA-positive status, and albumin on clearance, and of Japanese ethnicity on central and peripheral volumes of distribution. Exposure to lecanemab was comparable between two lecanemab-manufacturing processes. However, none of the identified covariates in the model had a clinically relevant impact on model-predicted lecanemab <i>C</i><sub>max</sub> or AUC at steady state following 10 mg/kg bi-weekly. Importantly, age, a well-recognized risk factor for AD, was not found to significantly affect lecanemab PK. The incidence of ARIA-E as a function of lecanemab exposure was modeled using a logit function with data pooled from 2641 subjects from the phase II and phase III studies, in which a total of 177 incidences of ARIA-E were observed. The probability of ARIA-E was significantly correlated with model-predicted <i>C</i><sub>max</sub> and predicted to be higher in subjects homozygous for <i>APOE4</i>. The incidence of isolated ARIA-H was not associated with lecanemab exposure and was similar between placebo and lecanemab-treated subjects.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"13 12","pages":"2111-2123"},"PeriodicalIF":3.1,"publicationDate":"2024-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/psp4.13224","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142105166","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of model-integrated evidence approaches for pharmacokinetic bioequivalence studies using model averaging methods 使用模型平均法评估药代动力学生物等效性研究的模型整合证据方法。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-08-28 DOI: 10.1002/psp4.13217
Henrik Bjugård Nyberg, Xiaomei Chen, Mark Donnelly, Lanyan Fang, Liang Zhao, Mats O. Karlsson, Andrew C. Hooker

Conventional approaches for establishing bioequivalence (BE) between test and reference formulations using non-compartmental analysis (NCA) may demonstrate low power in pharmacokinetic (PK) studies with sparse sampling. In this case, model-integrated evidence (MIE) approaches for BE assessment have been shown to increase power, but may suffer from selection bias problems if models are built on the same data used for BE assessment. This work presents model averaging methods for BE evaluation and compares the power and type I error of these methods to conventional BE approaches for simulated studies of oral and ophthalmic formulations. Two model averaging methods were examined: bootstrap model selection and weight-based model averaging with parameter uncertainty from three different sources, either from a sandwich covariance matrix, a bootstrap, or from sampling importance resampling (SIR). The proposed approaches increased power compared with conventional NCA-based BE approaches, especially for the ophthalmic formulation scenarios, and were simultaneously able to adequately control type I error. In the rich sampling scenario considered for oral formulation, the weight-based model averaging method with SIR uncertainty provided controlled type I error, that was closest to the target of 5%. In sparse-sampling designs, especially the single sample ophthalmic scenarios, the type I error was best controlled by the bootstrap model selection method.

在取样稀少的药代动力学(PK)研究中,使用非室分析(NCA)确定试验制剂和参比制剂之间生物等效性(BE)的传统方法可能会显示出较低的功率。在这种情况下,用于生物等效性评估的模型整合证据(MIE)方法已被证明可以提高功率,但如果模型建立在用于生物等效性评估的相同数据上,则可能会出现选择偏倚问题。本研究提出了用于 BE 评估的模型平均法,并在口服制剂和眼用制剂的模拟研究中比较了这些方法与传统 BE 方法的功率和 I 型误差。研究考察了两种模型平均法:自引导模型选择法和基于权重的模型平均法,其参数不确定性来自三种不同的来源:夹心协方差矩阵、自引导法或抽样重要性重采样(SIR)。与传统的基于 NCA 的 BE 方法相比,所提出的方法提高了功率,尤其是在眼科制剂方案中,同时还能充分控制 I 型误差。在口服制剂的丰富取样方案中,基于权重的模型平均法与 SIR 不确定性控制了 I 类误差,最接近 5%的目标值。在稀疏抽样设计中,尤其是在单个眼科样本的情况下,自举模型选择法对 I 类误差的控制效果最好。
{"title":"Evaluation of model-integrated evidence approaches for pharmacokinetic bioequivalence studies using model averaging methods","authors":"Henrik Bjugård Nyberg,&nbsp;Xiaomei Chen,&nbsp;Mark Donnelly,&nbsp;Lanyan Fang,&nbsp;Liang Zhao,&nbsp;Mats O. Karlsson,&nbsp;Andrew C. Hooker","doi":"10.1002/psp4.13217","DOIUrl":"10.1002/psp4.13217","url":null,"abstract":"<p>Conventional approaches for establishing bioequivalence (BE) between test and reference formulations using non-compartmental analysis (NCA) may demonstrate low power in pharmacokinetic (PK) studies with sparse sampling. In this case, model-integrated evidence (MIE) approaches for BE assessment have been shown to increase power, but may suffer from selection bias problems if models are built on the same data used for BE assessment. This work presents model averaging methods for BE evaluation and compares the power and type I error of these methods to conventional BE approaches for simulated studies of oral and ophthalmic formulations. Two model averaging methods were examined: bootstrap model selection and weight-based model averaging with parameter uncertainty from three different sources, either from a sandwich covariance matrix, a bootstrap, or from sampling importance resampling (SIR). The proposed approaches increased power compared with conventional NCA-based BE approaches, especially for the ophthalmic formulation scenarios, and were simultaneously able to adequately control type I error. In the rich sampling scenario considered for oral formulation, the weight-based model averaging method with SIR uncertainty provided controlled type I error, that was closest to the target of 5%. In sparse-sampling designs, especially the single sample ophthalmic scenarios, the type I error was best controlled by the bootstrap model selection method.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"13 10","pages":"1748-1761"},"PeriodicalIF":3.1,"publicationDate":"2024-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11494900/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142105165","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A fully automatic tool for development of population pharmacokinetic models 开发群体药代动力学模型的全自动工具。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-08-27 DOI: 10.1002/psp4.13222
Xiaomei Chen, Rikard Nordgren, Stella Belin, Alzahra Hamdan, Shijun Wang, Tianwu Yang, Zhe Huang, Simon J. Carter, Simon Buatois, João A. Abrantes, Andrew C. Hooker, Mats O. Karlsson

Population pharmacokinetic (PK) models are widely used to inform drug development by pharmaceutical companies and facilitate drug evaluation by regulatory agencies. Developing a population PK model is a multi-step, challenging, and time-consuming process involving iterative manual model fitting and evaluation. A tool for fully automatic model development (AMD) of common population PK models is presented here. The AMD tool is implemented in Pharmpy, a versatile open-source library for pharmacometrics. It consists of different modules responsible for developing the different components of population PK models, including the structural model, the inter-individual variability (IIV) model, the inter-occasional variability (IOV) model, the residual unexplained variability (RUV) model, the covariate model, and the allometry model. The AMD tool was evaluated using 10 real PK datasets involving the structural, IIV, and RUV modules in three sequences. The different sequences yielded generally consistent structural models; however, there were variations in the results of the IIV and RUV models. The final models of the AMD tool showed lower Bayesian Information Criterion (BIC) values and similar visual predictive check plots compared with the available published models, indicating reasonable quality, in addition to reasonable run time. A similar conclusion was also drawn in a simulation study. The developed AMD tool serves as a promising tool for fast and fully automatic population PK model building with the potential to facilitate the use of modeling and simulation in drug development.

群体药代动力学(PK)模型被广泛用于为制药公司的药物开发提供信息,并为监管机构的药物评估提供便利。开发群体 PK 模型是一个多步骤、具有挑战性且耗时的过程,其中涉及反复的人工模型拟合和评估。本文介绍了一种用于常见群体 PK 模型的全自动模型开发(AMD)工具。AMD 工具是在 Pharmpy 中实现的,Pharmpy 是一个多功能的药物计量学开源库。它由不同的模块组成,负责开发群体 PK 模型的不同组成部分,包括结构模型、个体间变异性 (IIV) 模型、事件间变异性 (IOV) 模型、残余未解释变异性 (RUV) 模型、协变量模型和异构模型。使用 10 个真实 PK 数据集对 AMD 工具进行了评估,涉及三个序列中的结构、IOV 和 RUV 模块。不同序列产生的结构模型基本一致;但 IIV 和 RUV 模型的结果存在差异。AMD 工具的最终模型显示出较低的贝叶斯信息标准(BIC)值,与现有的已发表模型相比,视觉预测检查图相似,表明除了运行时间合理外,质量也合理。模拟研究也得出了类似的结论。所开发的 AMD 工具是快速、全自动建立群体 PK 模型的理想工具,有望促进建模和模拟在药物开发中的应用。
{"title":"A fully automatic tool for development of population pharmacokinetic models","authors":"Xiaomei Chen,&nbsp;Rikard Nordgren,&nbsp;Stella Belin,&nbsp;Alzahra Hamdan,&nbsp;Shijun Wang,&nbsp;Tianwu Yang,&nbsp;Zhe Huang,&nbsp;Simon J. Carter,&nbsp;Simon Buatois,&nbsp;João A. Abrantes,&nbsp;Andrew C. Hooker,&nbsp;Mats O. Karlsson","doi":"10.1002/psp4.13222","DOIUrl":"10.1002/psp4.13222","url":null,"abstract":"<p>Population pharmacokinetic (PK) models are widely used to inform drug development by pharmaceutical companies and facilitate drug evaluation by regulatory agencies. Developing a population PK model is a multi-step, challenging, and time-consuming process involving iterative manual model fitting and evaluation. A tool for fully automatic model development (AMD) of common population PK models is presented here. The AMD tool is implemented in Pharmpy, a versatile open-source library for pharmacometrics. It consists of different modules responsible for developing the different components of population PK models, including the structural model, the inter-individual variability (IIV) model, the inter-occasional variability (IOV) model, the residual unexplained variability (RUV) model, the covariate model, and the allometry model. The AMD tool was evaluated using 10 real PK datasets involving the structural, IIV, and RUV modules in three sequences. The different sequences yielded generally consistent structural models; however, there were variations in the results of the IIV and RUV models. The final models of the AMD tool showed lower Bayesian Information Criterion (BIC) values and similar visual predictive check plots compared with the available published models, indicating reasonable quality, in addition to reasonable run time. A similar conclusion was also drawn in a simulation study. The developed AMD tool serves as a promising tool for fast and fully automatic population PK model building with the potential to facilitate the use of modeling and simulation in drug development.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"13 10","pages":"1784-1797"},"PeriodicalIF":3.1,"publicationDate":"2024-08-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11494844/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142072240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A stacking ensemble machine learning model for evaluating cardiac toxicity of drugs based on in silico biomarkers 基于硅学生物标志物评估药物心脏毒性的堆叠集合机器学习模型。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-08-26 DOI: 10.1002/psp4.13229
Yunendah Nur Fuadah, Ali Ikhsanul Qauli, Muhammad Adnan Pramudito, Aroli Marcellinus, Ulfa Latifa Hanum, Ki Moo Lim

This study addresses the critical issue of drug-induced torsades de pointes (TdP) risk assessment, a vital aspect of new drug development due to its association with arrhythmia and sudden cardiac death. Existing methodologies, particularly those reliant on a single biomarker derived from CiPA O'Hara-Rudy (CiPAORdv1.0) ventricular cell model without the hERG dynamic as input to the individual machine learning model, have limitations in capturing the complexity inherent in the comprehensive range of factors influencing drug-induced TdP risk. This study aims to overcome these limitations by proposing a stacking ensemble machine learning approach by integrating multiple in silico biomarkers derived from the CiPAORdv1.0 with hERG dynamic characteristics. The ensemble machine learning model consisted of three artificial neural network (ANN) models as baseline model and support vector machine (SVM), logistic regression (LR), random forest (RF), and extreme gradient boosting (XGBoost) models as meta-classifier. The highest AUC score of 1.00 (0.90–1.00) for high risk, 0.97 (0.84–1.00) for intermediate risk, and 1.00 (0.87–1.00) for low risk were obtained using seven biomarkers derived from the CiPAORdv1.0 with hERG dynamic characteristics. Furthering our investigation, we explored the model's robustness by incorporating interindividual variability into the generation of in silico biomarkers from a population of human ventricular cell models. This study also enabled an analysis of TdP risk classification under high clinical exposure and therapeutic scenarios for several drugs. Additionally, from a sensitivity analysis, we revealed four important ion channels, namely, CaL, NaL, Na, and Kr channels that affect significantly the important biomarkers for TdP risk prediction.

这项研究解决了药物诱导的心搏骤停(TdP)风险评估这一关键问题,由于心搏骤停与心律失常和心脏性猝死有关,因此它是新药开发的一个重要方面。现有的方法,尤其是那些依赖于从 CiPA O'Hara-Rudy (CiPAORdv1.0) 心室细胞模型中提取的单一生物标志物,而不将 hERG 动态作为单个机器学习模型的输入的方法,在捕捉影响药物诱发 TdP 风险的一系列综合因素的内在复杂性方面存在局限性。本研究提出了一种堆叠集合机器学习方法,将从 CiPAORdv1.0 中获得的多个硅学生物标志物与 hERG 动态特征整合在一起,旨在克服这些局限性。该集合机器学习模型由三个人工神经网络(ANN)模型作为基线模型,支持向量机(SVM)、逻辑回归(LR)、随机森林(RF)和极端梯度提升(XGBoost)模型作为元分类器。使用从具有 hERG 动态特征的 CiPAORdv1.0 中提取的 7 个生物标记物,高风险的 AUC 得分为 1.00(0.90-1.00),中风险的 AUC 得分为 0.97(0.84-1.00),低风险的 AUC 得分为 1.00(0.87-1.00)。在进一步研究中,我们将个体间的变异性纳入了从人类心室细胞模型群体中生成的硅学生物标记物中,从而探索了该模型的稳健性。这项研究还对几种药物在高临床暴露和治疗情况下的 TdP 风险分类进行了分析。此外,通过敏感性分析,我们发现了四个重要的离子通道,即 CaL、NaL、Na 和 Kr 通道,它们对 TdP 风险预测的重要生物标志物有重大影响。
{"title":"A stacking ensemble machine learning model for evaluating cardiac toxicity of drugs based on in silico biomarkers","authors":"Yunendah Nur Fuadah,&nbsp;Ali Ikhsanul Qauli,&nbsp;Muhammad Adnan Pramudito,&nbsp;Aroli Marcellinus,&nbsp;Ulfa Latifa Hanum,&nbsp;Ki Moo Lim","doi":"10.1002/psp4.13229","DOIUrl":"10.1002/psp4.13229","url":null,"abstract":"<p>This study addresses the critical issue of drug-induced torsades de pointes (TdP) risk assessment, a vital aspect of new drug development due to its association with arrhythmia and sudden cardiac death. Existing methodologies, particularly those reliant on a single biomarker derived from CiPA O'Hara-Rudy (CiPAORdv1.0) ventricular cell model without the hERG dynamic as input to the individual machine learning model, have limitations in capturing the complexity inherent in the comprehensive range of factors influencing drug-induced TdP risk. This study aims to overcome these limitations by proposing a stacking ensemble machine learning approach by integrating multiple in silico biomarkers derived from the CiPAORdv1.0 with hERG dynamic characteristics. The ensemble machine learning model consisted of three artificial neural network (ANN) models as baseline model and support vector machine (SVM), logistic regression (LR), random forest (RF), and extreme gradient boosting (XGBoost) models as meta-classifier. The highest AUC score of 1.00 (0.90–1.00) for high risk, 0.97 (0.84–1.00) for intermediate risk, and 1.00 (0.87–1.00) for low risk were obtained using seven biomarkers derived from the CiPAORdv1.0 with hERG dynamic characteristics. Furthering our investigation, we explored the model's robustness by incorporating interindividual variability into the generation of in silico biomarkers from a population of human ventricular cell models. This study also enabled an analysis of TdP risk classification under high clinical exposure and therapeutic scenarios for several drugs. Additionally, from a sensitivity analysis, we revealed four important ion channels, namely, CaL, NaL, Na, and Kr channels that affect significantly the important biomarkers for TdP risk prediction.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"13 12","pages":"2159-2170"},"PeriodicalIF":3.1,"publicationDate":"2024-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/psp4.13229","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142055164","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development and comparison of model-integrated evidence approaches for bioequivalence studies with pharmacokinetic end points 开发和比较用于药代动力学终点生物等效性研究的模型整合证据方法。
IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY Pub Date : 2024-08-23 DOI: 10.1002/psp4.13216
Xiaomei Chen, Henrik B. Nyberg, Mark Donnelly, Liang Zhao, Lanyan Fang, Mats O. Karlsson, Andrew C. Hooker

By applying nonlinear mixed-effect (NLME) models, model-integrated evidence (MIE) approaches are able to analyze bioequivalence (BE) data with pharmacokinetic end points that have sparse sampling, which is problematic for non-compartmental analysis (NCA). However, MIE approaches may suffer from inflation of type I error due to underestimation of parameter uncertainty and to the assumption of asymptotic normality. In this study, we developed a MIE BE analysis method that is based on a pre-defined model and consists of several steps including model fitting, uncertainty assessment, simulation, and BE determination. The presented MIE approach has several improvements compared with the previously reported model-integrated methods: (1) treatment, sequence, and period effects are only added to absorption parameters (such as relative bioavailability and rate of absorption) instead of all PK parameters; (2) a simulation step is performed to generate confidence intervals of the pharmacokinetic metrics for BE assessment; and (3) in an effort to maintain type I error, two more advanced parameter uncertainty evaluation approaches are explored, a nonparametric (case resampling) bootstrap, and sampling importance resampling (SIR). To evaluate the developed method and compare the uncertainty assessment methods, simulation experiments were performed for BE studies using a two-way crossover design with different amounts of information (sparse to rich designs) and levels of variability. Based on the simulation results, the method using SIR for parameter uncertainty quantification controls type I error at the nominal level of 0.05 (i.e., the significance level set for BE evaluation) even for studies with small sample size and/or sparse sampling. As expected, our MIE approach for BE assessment exhibited higher power than the NCA-based method, especially as the data becomes sparser and/or more variable.

通过应用非线性混合效应(NLME)模型,模型整合证据(MIE)方法能够分析具有稀疏采样的药代动力学终点的生物等效性(BE)数据,这对于非室分析(NCA)来说是个问题。然而,由于低估了参数的不确定性和假设了渐近正态性,MIE 方法可能会导致 I 型误差的扩大。在本研究中,我们开发了一种 MIE BE 分析方法,该方法基于预先定义的模型,包括模型拟合、不确定性评估、模拟和 BE 测定等几个步骤。与之前报道的模型整合方法相比,本研究提出的 MIE 方法有几处改进:(1) 只在吸收参数(如相对生物利用度和吸收率)中加入治疗、序列和时期效应,而不是所有 PK 参数;(2) 执行模拟步骤以生成用于 BE 评估的药代动力学指标的置信区间;(3) 为了保持 I 型误差,我们探索了两种更先进的参数不确定性评估方法,即非参数(个案重采样)自引导法和采样重要性重采样法(SIR)。为了评估所开发的方法并比较不确定性评估方法,我们对采用双向交叉设计的 BE 研究进行了模拟实验,并采用了不同的信息量(稀疏设计到丰富设计)和变异水平。根据模拟结果,使用 SIR 进行参数不确定性量化的方法即使在样本量较小和/或取样稀少的研究中,也能将 I 型误差控制在 0.05 的标称水平(即为 BE 评估设定的显著性水平)。正如预期的那样,我们的 MIE BE 评估方法比基于 NCA 的方法显示出更高的能力,尤其是当数据变得更稀少和/或更多变时。
{"title":"Development and comparison of model-integrated evidence approaches for bioequivalence studies with pharmacokinetic end points","authors":"Xiaomei Chen,&nbsp;Henrik B. Nyberg,&nbsp;Mark Donnelly,&nbsp;Liang Zhao,&nbsp;Lanyan Fang,&nbsp;Mats O. Karlsson,&nbsp;Andrew C. Hooker","doi":"10.1002/psp4.13216","DOIUrl":"10.1002/psp4.13216","url":null,"abstract":"<p>By applying nonlinear mixed-effect (NLME) models, model-integrated evidence (MIE) approaches are able to analyze bioequivalence (BE) data with pharmacokinetic end points that have sparse sampling, which is problematic for non-compartmental analysis (NCA). However, MIE approaches may suffer from inflation of type I error due to underestimation of parameter uncertainty and to the assumption of asymptotic normality. In this study, we developed a MIE BE analysis method that is based on a pre-defined model and consists of several steps including model fitting, uncertainty assessment, simulation, and BE determination. The presented MIE approach has several improvements compared with the previously reported model-integrated methods: (1) treatment, sequence, and period effects are only added to absorption parameters (such as relative bioavailability and rate of absorption) instead of all PK parameters; (2) a simulation step is performed to generate confidence intervals of the pharmacokinetic metrics for BE assessment; and (3) in an effort to maintain type I error, two more advanced parameter uncertainty evaluation approaches are explored, a nonparametric (case resampling) bootstrap, and sampling importance resampling (SIR). To evaluate the developed method and compare the uncertainty assessment methods, simulation experiments were performed for BE studies using a two-way crossover design with different amounts of information (sparse to rich designs) and levels of variability. Based on the simulation results, the method using SIR for parameter uncertainty quantification controls type I error at the nominal level of 0.05 (i.e., the significance level set for BE evaluation) even for studies with small sample size and/or sparse sampling. As expected, our MIE approach for BE assessment exhibited higher power than the NCA-based method, especially as the data becomes sparser and/or more variable.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"13 10","pages":"1734-1747"},"PeriodicalIF":3.1,"publicationDate":"2024-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11494825/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142035388","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
CPT: Pharmacometrics & Systems Pharmacology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1