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Determination of Au Film Thiolation and Silane Bonding Onto SiO2 Films Within the Frame of Biosensor Surface Functionalization – an Analysis of Best Practices and Techniques 在生物传感器表面功能化框架内测定SiO2膜上的Au膜硫化和硅烷键合——最佳实践和技术分析
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2020-04-24 DOI: 10.5562/cca3640
L. Bousiakou, Stefanos Karapetis
This paper reviews some of the most common surface modification approaches in biosensing based on self-assembled monolayers with a particular focus on Au film thiolation and SiO2 film silanization. Such approaches are routinely used to alter the materials’ surface properties towards a desired bioresponse. Furthermore, the most appropriate characterization methods towards ensuring successful surface modification are presented including XPS, HREELS, SPFS, Raman and FTIR spectroscopy as well as UPS with specific examples to demonstrate their importance. In addition, the mechanisms of fluorescent and non-fluorescent biotinylation of thiolated Au films and silanized SiO2 are discussed considering its importance in conjugating biomolecules such as enzymes, antibodies or chemokines onto surfaces, which carries high significance for biosensing applications. Finally, within this frame characterization routes towards ensuring effective attachment are discussed.
本文综述了基于自组装单层的生物传感中一些最常见的表面修饰方法,特别关注Au膜的硫化和SiO2膜的硅烷化。这种方法通常用于改变材料的表面性质以达到所需的生物响应。此外,还介绍了确保表面改性成功的最合适的表征方法,包括XPS、HREELS、SPFS、拉曼光谱和FTIR光谱以及UPS,并举例说明了它们的重要性。此外,考虑到硫化Au膜和硅烷化SiO2在将酶、抗体或趋化因子等生物分子偶联到表面上的重要性,讨论了其荧光和非荧光生物素化的机制,这对生物传感应用具有重要意义。最后,在此框架内,讨论了确保有效附着的表征路线。
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引用次数: 1
Synthesis, Microbiological Activity and In Silico Investigation for Some Synthesized Coumarin Derivatives 几种香豆素衍生物的合成、微生物活性及在硅中的研究
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2020-04-24 DOI: 10.5562/cca3637
S. Špirtović-Halilović, A. Osmanović, D. Završnik, Aida Selmanagić, Selma Škrbo, Nihada Škrijelj, S. Trifunović, S. Roca, D. Softić, A. Sapcanin, M. Salihović, E. Veljović
Four 4-hydroxycoumarin derivatives were synthesized and the structure was confirmed by NMR spectroscopy and Mass spectrometry. Tested compounds have shown significant antimicrobial activity against Bacillus subtilis subsp. spizizenii, Bacillus cereus, Staphylococcus aureus, and Staphylococcus epidermidis, and the effect of more halogens on the benzene nucleus, as well as the combination of halogen and alkyl groups, on the antimicrobial activity, was investigated. According to the docking study, these compounds can operate simultaneously on two enzymes, amylase and gyrase (1BAG and 1KZN), which are known to play an important role in bacterial life. Obtained docking study parameters for tested compounds showed an association with the in vitro results of the antimicrobial activity of these compounds. In silico tests of molecular properties of the tested compounds showed that the compounds met Lipinski's rule of five. In this paper, the ADME parameters of tested compounds were also calculated: Caco2 (in vitro Caco2 cell permeability), HIA (human intestinal absorption), MDCK (in vitro Mandin Darby Canine Kidney (MDCK) cell permeability), TPSA (topological polar surface area), etc.
合成了四种4-羟基香豆素衍生物,并通过核磁共振波谱和质谱对其结构进行了确证。测试的化合物对枯草芽孢杆菌亚种显示出显著的抗菌活性。研究了spizizenii、蜡样芽孢杆菌、金黄色葡萄球菌和表皮葡萄球菌,以及更多卤素对苯核的影响,以及卤素和烷基的组合对抗菌活性的影响。根据对接研究,这些化合物可以同时作用于两种酶,淀粉酶和旋转酶(1BAG和1KZN),这两种酶在细菌生活中发挥着重要作用。所获得的测试化合物的对接研究参数显示出与这些化合物的抗菌活性的体外结果相关。对测试化合物的分子性质进行的计算机测试表明,这些化合物符合利平斯基的五条规则。本文还计算了受试化合物的ADME参数:Caco2(体外Caco2细胞通透性)、HIA(人体肠道吸收)、MDCK(体外Mandin-Darby Canine Kidney(MDCK)细胞通透性)和TPSA(拓扑极表面积)等。
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引用次数: 0
Vitomir Šunjić and Krunoslav Kovačević Vitomir Shunić和Krunoslav Kovačevic
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2020-04-24 DOI: 10.5562/cca3666
M. Žinić
Editor: Danijel NamjesnikPublished by: Croatian Chemical Society, Zagreb, 2020ISBN 978-953-8334-00-9 (Hardcover)ISBN 978-953-8334-01-6 (pdf)310 pages Open access: https://prelog.hkd.hr/
编辑:Danijel namjesnik出版:克罗地亚化学学会,萨格勒布,2020ISBN 978-953-8334-00-9(精装)ISBN 978-953-8334-01-6 (pdf)310页开放获取:https://prelog.hkd.hr/
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引用次数: 0
Structural Characterization of β-Glycolaldehyde Dimer β-乙醇醛二聚体的结构表征
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2020-04-24 DOI: 10.5562/cca3606
V. Mohaček-Grošev, B. Prugovečki, S. Prugovečki
Structural characterization of the β-polymorph of glycolaldehyde dimer by powder X-ray diffraction, Raman and infrared spectroscopies is described. The previously described α-polymorph and the β-polymorph both crystallize in the monoclinic crystal system, space group P21/c, but with different cell parameters. There are no significant differences in the glycolaldehyde dimer molecular structure, the molecules in both polymorphs are trans-isomers with the hydroxyl groups in axial positions. The two polymorphs have a different arrangement of the glycolaldehyde dimer molecules. In the previously reported α-polymorph the molecules are arranged in hydrogen bonded layers parallel to (100) while in the β-polymorph the hydrogen bonded molecules are arranged in a three-dimensional network. Theoretically calculated Gibbs free energy as well as differential scanning calorimetry indicate β-polymorph to be the stable crystal phase of glycolaldehyde.
用粉末x射线衍射、拉曼光谱和红外光谱对乙醇醛二聚体β-多晶结构进行了表征。α-多晶和β-多晶均在单斜晶体系P21/c空间群中结晶,但细胞参数不同。乙醇醛二聚体的分子结构无明显差异,两种多晶型均为反式异构体,羟基在轴向位置。这两种多晶型具有不同的乙醇醛二聚体分子排列。在先前报道的α-多晶型中,分子排列在平行于(100)的氢键层中,而在β-多晶型中,氢键分子排列在三维网络中。理论计算的吉布斯自由能和差示扫描量热法表明β-多晶是乙醇醛的稳定晶相。
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引用次数: 0
Green Chemistry Approach to the Synthesis of Biscoumarins from 4-Hydroxycoumarin 4-羟基香豆素合成双香豆素的绿色化学方法
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2020-04-24 DOI: 10.5562/cca3643
Mirjana Lončar, Marija Kovač, M. Molnar
Numerous biological and pharmacological properties of coumarins have designated them as significant synthetic target in many fields. Biscoumarins are considered as an important class of coumarin derivatives that show remarkable pharmacological properties. Therefore, development of the efficient new methods for their synthesis, based on green methodology, would be of a great importance in medicinal and pharmaceutical chemistry. In this work, the ultrasound and microwave assisted synthesis of biscoumarins, starting from corresponding aldehydes and 4-hydroxycoumarin is reported. Molecular iodine was used as an efficient and inexpensive catalyst for a simple synthesis, to obtain excellent yields using ethanol as a solvent. It was found that 10 % (n / n) of molecular iodine catalyzes biscoumarin synthesis in high yields (80–94 %) and in short reaction times, using both ultrasound, as well as microwave promoted conditions. Furthermore, when those two methods are compared, ultrasound promoted reactions were proven to be more suitable for this kind of reaction.
香豆素的许多生物学和药理学特性使其成为许多领域重要的合成靶点。双香豆素是一类重要的香豆素衍生物,具有显著的药理作用。因此,开发基于绿色方法学的高效合成新方法对药物化学具有重要意义。本文报道了超声和微波辅助合成双香豆素的方法,从相应的醛和4-羟基香豆素开始。采用分子碘作为一种高效、廉价的催化剂,以乙醇为溶剂进行了简单的合成,获得了优异的收率。研究发现,在超声和微波催化条件下,10% (n / n)的碘分子催化双香豆素合成收率高(80 - 94%),反应时间短。通过对比两种方法,超声促进反应更适合于这类反应。
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引用次数: 0
Mn(III) Catalyzed Electrochemical Reduction of CO2 on Carbon Electrodes Mn(III)催化CO2在碳电极上的电化学还原
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2020-04-24 DOI: 10.5562/cca3614
Khalaf M. Alenezi
Though challenging, conversion of carbon dioxide (CO2) to valuable products is an emerging area of research. Electrochemical reduction (ECR) has emerged as an efficient and rapid technique to achieve this goal. Herein, 5,10,15,20-tetraphenyl-21H, 23H-porphine manganese(III) chloride [(Mn(TPP)Cl)] catalyzed CO2 reduction at vitreous carbon electrode in acetonitrile electrolyte is reported. The effect of catalyst concentration, addition of Brönsted acid (CF3CH2OH) to CO2-saturated solution have been studied and reported. Based on the results, possible mechanistic pathways have also been suggested and discussed.
尽管具有挑战性,但将二氧化碳转化为有价值的产品是一个新兴的研究领域。电化学还原(ECR)已成为实现这一目标的一种有效而快速的技术。本文报道了5,10,15,20-四苯基-21H,23H-卟啉锰(III)氯化物[(Mn(TPP)Cl)]在乙腈电解质中的玻璃碳电极上催化CO2还原。研究并报道了催化剂浓度、Brönsted酸(CF3CH2OH)对CO2饱和溶液的影响。基于这些结果,还提出并讨论了可能的机制途径。
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引用次数: 0
Convexity Deficit of Benzenoids 苯类化合物的凹凸性缺陷
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2020-03-21 DOI: 10.5562/CCA3602
N. Bašić, P. Fowler, Sara Sabrina Zemljič, P. Stadler, Nancy Retzlaff, T. Pisanski, Thomas Gatter, Jörg Fallmann, Sarah J. Berkemer
In 2012, a family of benzenoids was introduced by Cruz, Gutman, and Rada, which they called convex benzenoids. In this paper we introduce the convexity deficit, a new topological index intended for benzenoids and, more generally, fusenes. This index measures by how much a given fusene departs from convexity. It is defined in terms of the boundary-edges code. In particular, convex benzenoids are exactly the benzenoids having convexity deficit equal to 0. Quasi-convex benzenoids form the family of non-convex benzenoids that are closest to convex, i.e., they have convexity deficit equal to 1. Finally, we investigate convexity deficit of several important families of benzenoids.
2012年,Cruz、Gutman和Rada引入了一个类苯化合物家族,他们称之为凸类苯化合物。在本文中,我们引入了凸性亏,这是一个新的拓扑指数,适用于苯并类,更广泛地说,稠烯。该指数通过给定的稠烯偏离凸性的程度来衡量。它是根据边界边代码定义的。特别地,凸的类苯正是凸性缺陷等于0的类苯。拟凸类苯形成了最接近凸的非凸类苯族,即它们具有等于1的凸性亏。最后,我们研究了几个重要的类苯族的凸性缺陷。
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引用次数: 3
Conformational Analysis of Cinhonine and Cinhonidine by Tensor Decomposition of Molecular Dynamics Trajectories 用分子动力学轨迹张量分解分析肉桂碱和肉桂碱的构象
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2019-11-28 DOI: 10.5562/CCA3557
Karlo Sović, T. Ostojić, I. Primožič, T. Hrenar, Mirjana Skočibušić, R. Odžak, A. Ramić, Sara Cepić
Full conformational space of cinchonine and cinchonidine has been investigated by means of statistical analysis of quantum chemical molecular dynamics simulations. Recently developed procedure comprising principal component analysis of molecular dynamics trajectories was applied on cinchonine and cinchonidine as well as on their protonated and methylated quaternary derivatives. The method for full conformational analysis includes Cartesian coordinates sampling through quantum chemical molecular dynamics simulations, reduction of dimensionality by principal component analysis, determination of probability distributions in a reduced space of Cartesian coordinates and search for all the strict extrema points in probability distribution functions. In order to gain crucial insight in the understanding of chirality induction of these alkaloids, comparison of the determined conformational spaces of pseudo-enantiomers has been made. It was shown that protonation of the quinuclidine nitrogen atom stabilizes the conformers with the intramolecular 1N–H∙∙∙9O hydrogen bond whereas methylation on the same position results in the reduction of the domain of internal coordinates responsible for the conformational space.
通过量子化学分子动力学模拟的统计分析,研究了金鸡宁和金鸡尼定的全构象空间。最近开发的包括分子动力学轨迹的主成分分析的程序被应用于金鸡宁和金鸡尼定以及它们的质子化和甲基化的四元衍生物。全构象分析的方法包括通过量子化学分子动力学模拟进行笛卡尔坐标采样,通过主成分分析进行降维,确定笛卡尔坐标的降维空间中的概率分布,以及搜索概率分布函数中的所有严格极值点。为了在理解这些生物碱的手性诱导方面获得重要的见解,对所确定的伪对映体的构象空间进行了比较。研究表明,奎宁环氮原子的质子化稳定了分子内1N–H∙∙9O氢键的构象,而在相同位置的甲基化导致负责构象空间的内部坐标域的减少。
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引用次数: 0
Theoretical, Spectroscopic and Crystal Structure Investigation of a Novel Selenomolybdate (NH4)4[Se2Mo5O21]·3H2O 一种新型硒钼酸盐(NH4)4[Se2Mo5O21]·3H2O的理论、光谱和晶体结构研究
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2019-11-18 DOI: 10.5562/cca3605
Jihen Ajmi, Ichraf Nagazi, T. B. Issa, Ali Harchani, A. Haddad
The current investigation undertakes the synthesis, crystal structure, spectroscopic, thermal analyses and theoretical calculations of a new 3 D Strandberg-type polyoxometalate-based inorganic (NH4)4[Se2Mo5O21]·3H2O (denoted as ASH). Structural data obtained by single crystal X-ray diffraction revealed that the titled compound crystallizes in orthorhombic system with Pbcn space group, having parameters a = 15.0927(2) Å, b = 13.3633(1) Å, c = 23.8204(3) Å and Z = 8. Molecular structure and spectroscopic analysis were performed using experimental techniques like X-ray diffraction, infrared spectrum, UV–visible spectroscopy and thermogravimetric analysis. Hirshfeld surface analysis was performed to study the intermolecular interactions. The structural arrangement is mainly made by a system of H-bonds. All Strandberg clusters anions [Se2Mo5O21]4– are connected to each other through water molecules and the ammonium groups NH4+ to build a 3D (3 dimensional) supramolecular framework. Theoretical calculations were performed using PM3 semi-empirical model and several properties were studied.
本研究进行了一种新的三维strandberg型多金属氧酸盐基无机物(NH4)4[Se2Mo5O21]·3H2O(表示为ASH)的合成、晶体结构、光谱、热分析和理论计算。通过x射线单晶衍射得到的结构数据表明,该化合物为具有Pbcn空间群的正交晶系,其参数为a = 15.0927(2) Å, b = 13.3633(1) Å, c = 23.8204(3) Å, Z = 8。使用x射线衍射、红外光谱、紫外可见光谱和热重分析等实验技术进行分子结构和光谱分析。Hirshfeld表面分析研究了分子间相互作用。结构排列主要是由氢键系统构成的。所有Strandberg簇阴离子[Se2Mo5O21]4 -通过水分子和铵基NH4+相互连接,构建了一个3D(三维)超分子框架。采用PM3半经验模型进行理论计算,研究了PM3的几种性能。
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引用次数: 1
Multinuclear Magnetic Resonance Study on Aluminium Sec-butoxide Chelated with Ethyl Acetoacetate in Various Amounts 仲丁醇铝与不同量乙酸乙酯螯合的多核磁共振研究
IF 0.3 4区 化学 Q4 Chemistry Pub Date : 2019-09-04 DOI: 10.5562/CCA3426
S. Kurajica, G. Mali, V. Mandić, I. Minga
Reactive aluminum alkoxide (ASB, aluminium sec-butoxide) was chelated using β-diketone (EAA, ethyl acetoacetate) in order to gain control over rapid hydrolysis in the course of the sol-gel process. Derived chelates were analysed using several NMR spectroscopic techniques: one-dimensional 1H, 13C, 27Al NMR and two-dimensional COSY, HSQC and DOSY. The NMR analysis enabled identification of the formed chelate species, as well as determination of their quantitative relationships. Several complexation products were observed: tris-chelated monomer, Al(EAA)3, bis-chelated dimmer, Al2(OnBu)4(EAA) 2, tris-chelated dimmer, Al2(OnBu)3(EAA)3, tetra-chelated dimmer, Al2(OnBu)2(EAA)4, and monochelated trimer, Al3(OnBu)8(EAA). Of the formed oligomer compounds, this is the first evidence of Al2(OR)3L3 in any alkoxide and β-ketoester or β-diketone combination. Aluminium sec-butoxide and ethyl acetoacetate complexes Al2(OnBu)4(EAA) 2 and Al2(OnBu)2(EAA)4 were also observed for the first time. With the increase of the EAA/ASB ratio the coordination of aluminium shifts towards six, whereas above the EAA/ASB ratio of 2.5 solely six-coordinated aluminium exists.
用β-二酮(EAA,乙乙酸乙酯)螯合活性铝醇酸盐(ASB,仲丁醇铝)以控制溶胶-凝胶过程中的快速水解。衍生的螯合物使用几种核磁共振光谱技术进行分析:一维1H, 13C, 27Al核磁共振和二维COSY, HSQC和DOSY。核磁共振分析能够识别形成的螯合物种类,以及确定它们的定量关系。观察到几种络合产物:三螯合单体Al(EAA)3,双螯合二聚体,Al2(OnBu)4(EAA) 2,三螯合二聚体,Al2(OnBu)3(EAA)3,四螯合二聚体,Al2(OnBu)2(EAA)4,单螯合三聚体Al3(OnBu)8(EAA)。在形成的低聚物化合物中,这是Al2(OR)3L3在任何醇氧化合物和β-酮酯或β-二酮组合中的第一个证据。仲丁醇铝与乙酰乙酸乙酯配合物Al2(OnBu)4(EAA) 2和Al2(OnBu)2(EAA)4也首次被观察到。随着EAA/ASB比的增加,铝的配位向6位靠拢,而在EAA/ASB比为2.5以上,铝的配位仅为6位。
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引用次数: 4
期刊
Croatica Chemica Acta
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