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Advances in Desmuramyl Peptide Research 去壁酰肽研究进展
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/cca3556
R. Ribić, Marija Paurević, S. Tomić
Immune adjuvants are added to vaccines in order to enhance the immune response to an antigen. Muramyl dipeptide, N-acetylmuramyl-L-alanyl-D-isoglutamine, is the smallest structural unit of peptidoglycans showing the immunostimulating activity. Muramyl dipeptide analogues without the hydrophilic N-acetylmuramyl moiety are called desmuramyl peptides. Here, we provide review of desmuramyl peptides which were synthesized in order to improve the pharmacological properties of parent muramyl dipeptide, including our results regarding adamantane containing derivatives. Approach for future design of novel immunostimulators based on multiple pathogen recognition receptor activation was also considered.
在疫苗中加入免疫佐剂是为了增强对抗原的免疫反应。Muramyl二肽,n -乙酰Muramyl - l- alanyl- d -异谷氨酰胺,是具有免疫刺激活性的肽聚糖中最小的结构单元。没有亲水性n -乙酰基Muramyl部分的Muramyl二肽类似物被称为去乳酰肽。在此,我们综述了为改善亲本二肽的药理特性而合成的金刚烷酰肽,包括我们在含金刚烷衍生物方面的研究结果。展望了基于多病原体识别受体激活的新型免疫刺激剂的设计思路。
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引用次数: 3
Estimation of Random Accuracy and its Use in Validation of Predictive Quality of Classification Models within Predictive Challenges 随机精度估计及其在预测挑战下分类模型预测质量验证中的应用
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/cca3551
B. Lučić, Jadranko Batista, V. Bojović, M. Lovrić, Ana Sovic Krzic, D. Bešlo, Damir Nadramija, D. Vikić-Topić
Shortcomings of the correlation coefficient (Pearson's) as a measure for estimating and calculating the accuracy of predictive model properties are analysed. Here we discuss two such cases that can often occur in the application of the model in predicting properties of a new external set of compounds. The first problem in using the correlation coefficient is its insensitivity to the systemic error that must be expected in predicting properties of a novel external set of compounds, which is not a random sample selected from the training set. The second problem is that an external set can be arbitrarily large or small and have an arbitrary and uneven distribution of the measured value of the target variable, whose values are not known in advance. In these conditions, the correlation coefficient can be an overoptimistic measure of agreement of predicted values with the corresponding experimental values and can lead to a highly optimistic conclusion about the predictive ability of the model. Due to these shortcomings of the correlation coefficient, the use of standard error (root-mean-square-error) of prediction is suggested as a better quality measure of predictive capabilities of a model. In the case of classification models, the use of the difference between the real accuracy and the most probable random accuracy of the model shows very good characteristics in ranking different models according to predictive quality, having at the same time an obvious interpretation.
分析了相关系数(Pearson’s)作为估计和计算预测模型特性准确性的度量的缺点。在这里,我们讨论了在应用该模型预测一组新的外部化合物的性质时经常出现的两种情况。使用相关系数的第一个问题是它对预测新的外部化合物集合的性质时必须预期的系统误差不敏感,该集合不是从训练集中选择的随机样本。第二个问题是,外部集合可以是任意大或小的,并且具有目标变量的测量值的任意且不均匀的分布,其值事先是未知的。在这些条件下,相关系数可能是预测值与相应实验值一致性的过于乐观的度量,并可能导致对模型的预测能力的高度乐观的结论。由于相关系数的这些缺点,建议使用预测的标准误差(均方根误差)作为模型预测能力的更好质量度量。在分类模型的情况下,使用模型的真实准确度和最可能的随机准确度之间的差异,在根据预测质量对不同模型进行排序时显示出非常好的特性,同时具有明显的解释。
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引用次数: 25
The Phenanthridine-modified Tyrosine Dipeptide 菲咯啶修饰的酪氨酸二肽
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/CCA3542
Antonija Erben, J. Matić, N. Basarić, I. Piantanida
Dipeptide 4 containing two unnatural amino acids, a modified tyrosine and a phenanthridine derivative, was synthesized. Binding of the dipeptide to a series of polynucleotides including ct-DNA, poly A - poly U, poly (dAdT)2, poly dG - poly dC and poly (dGdC)2 was investigated by thermal denaturation experiments, fluorescence spectroscopy and circular dichroism. Thermal denaturation experiments indicated that dipeptide 4 at pH 5.0, when phenanthridine is protonated, stabilizes ds-DNA, whereas it destabilizes ds-RNA. At pH 7.0, when the phenanthridine is not protonated, effects of 4 to the polynucleotide melting temperatures are negligible. At pH 5.0, dipeptide 4 stabilized DNA double helices, and the changes in the CD spectra suggest different modes of binding to ds-DNA, most likely the intercalation to poly dG- poly dC and non-specific binding in grooves of other DNA polynucleotides. At variance to ds-DNA, addition of 4 destabilized ds-RNA against thermal denaturation and CD results suggest that addition of 4 probably induced dissociation of ds-RNA into ss-RNA strands due to preferred binding to ss-RNA. Thus, 4 is among very rare small molecules that stabilize ds-DNA but destabilize ds-RNA. However, fluorescence titrations with all polynucleotides at both pH values gave similar binding affinity (log Ka ≈ 5), indicating nonselective binding. Preliminary photochemical experiments suggest that dipeptide 4 reacts in the photochemical reaction, which affects polynucleotides chirality, presumably via quinone methide intermediates that alkylate DNA.
合成了含有两种非天然氨基酸的二肽4,一种是修饰酪氨酸,另一种是菲衍生物。通过热变性实验、荧光光谱和圆二色性研究了二肽与一系列多核苷酸的结合,这些多核苷酸包括ct-DNA、poly-a-poly-U、poly(dAdT)2、poly-dG-poly-dC和poly(dGdC)2。热变性实验表明,当菲啶质子化时,pH 5.0下的二肽4稳定了ds-DNA,而不稳定了ds-RNA。在pH 7.0下,当菲没有质子化时,4对多核苷酸熔化温度的影响可以忽略不计。在pH 5.0时,二肽4稳定了DNA双螺旋,CD光谱的变化表明与ds-DNA的结合模式不同,最有可能是嵌入到poly-dG-poly-dC和在其他DNA多核苷酸的凹槽中非特异性结合。在与ds-DNA不同的情况下,添加4个不稳定的ds-RNA以对抗热变性和CD结果表明,添加4可能由于与ss-RNA的优选结合而诱导ds-RNA解离成ss-RNA链。因此,4是非常罕见的稳定ds-DNA但不稳定ds-RNA的小分子之一。然而,在两个pH值下用所有多核苷酸进行的荧光滴定给出了相似的结合亲和力(log Ka≈5),表明非选择性结合。初步光化学实验表明,二肽4在光化学反应中反应,这可能通过使DNA烷基化的醌甲酰胺中间体影响多核苷酸的手性。
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引用次数: 2
Synthesis, Spectral Analysis, Molecular Docking and Biological Evaluation of Cyclohepta[b]indole Derivatives 环庚[b]吲哚衍生物的合成、光谱分析、分子对接及生物学评价
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/cca3375
A. Amuthavalli, B. Prakash, D. Edison, R. Velmurugan
A new series of specifically substituted cyclohepta[b]indole derivatives from the precursor thiophen-2-ylmethylene has been synthesized. The structures of synthesized derivatives were established by spectral and elemental analyses. The docking studies with protein kinase CK2 was performed, derivative 6c exhibited the most excellent glide and E model score of –7.61 and –58.27, respectively. In-vitro anticancer activity against cervical cancer cell line (HeLa) was studied. The IC50 values were compared with the standard drug Ellipticine. Compounds 5c, 6c and 6d showed better IC50 value when compared to the other molecules. The derivatives were evaluated for their antibacterial activity against the reference drugs Sparfloxacin and Norfloxacin using agar dilution method. The derivatives 4a–d exhibited better MIC values against Gram-positive bacteria and Gram-negative bacteria when compared with remaining derivatives. Structure activity relationship (SAR) analyses established that the derivatives are potential lead compounds for future drug development studies.
由前体噻吩-2-基亚甲基合成了一系列新的特异性取代环庚[b]吲哚衍生物。通过光谱分析和元素分析确定了合成衍生物的结构。与蛋白激酶CK2进行对接研究,衍生物6c的滑翔和E模型评分分别为-7.61和-58.27,表现出最优异的性能。研究了体外抗宫颈癌细胞株(HeLa)的活性。将IC50值与标准药Ellipticine进行比较。化合物5c、6c和6d表现出较好的IC50值。用琼脂稀释法测定其对对照药物司帕沙星和诺氟沙星的抑菌活性。与其他衍生物相比,衍生物4a-d对革兰氏阳性菌和革兰氏阴性菌具有更好的MIC值。构效关系(SAR)分析表明,这些衍生物是未来药物开发研究的潜在先导化合物。
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引用次数: 2
Marking a Century of the Department of Chemistry and Biochemistry at School of Medicine in Zagreb 萨格勒布医学院化学与生物化学系百年校庆
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/cca3554
Kristina Mlinac-Jerković, V. Damjanović, S. Kalanj-Bognar, J. Lovrić
In 2018 the Department of Chemistry and Biochemistry at Zagreb School of Medicine celebrated 100 years since it was established by professor Fran Bubanović. This essay is focused on his successors, outstanding teachers and scientists, professors Tomislav Pinter and Mihovil Proštenik, members of Yugoslavian (today Croatian) Academy of Sciences and Arts. Tomislav Pinter was a prominent physical chemist who had an original approach and gave novel interpretation of van der Waals and Wohl’s equations. He also served as the president of Croatian Chemical Society. Neurobiochemist Mihovil Proštenik started as an organic chemist at “Prelog’s Zagreb School of Organic Chemistry”. He collaborated with two Croatian Nobel prize winners in chemistry: his PhD thesis supervisor Vladimir Prelog and Lavoslav Ružička. He was the founder of “Zagreb School of Lipidology”, discovered a new sphingoid base C20-sphingosine, and had a major role in the establishment of Ruđer Bošković Institute. Herein we honor their contributions to Croatian science and beyond, and share so far unpublished valuable material from the Department archive.
2018年,萨格勒布医学院化学和生物化学系庆祝了Fran Bubanović教授成立100周年。这篇文章的重点是他的继任者,杰出的教师和科学家,南斯拉夫(今天的克罗地亚)科学与艺术学院的Tomislav Pinter和Mihovil Proštenik教授。Tomislav Pinter是一位杰出的物理化学家,他有着独创的方法,并对范德华和沃尔方程做出了新颖的解释。他还担任过克罗地亚化学学会主席。神经生物化学家Mihovil Proštenik最初是“Prelog’s Zagreb School of organic Chemistry”的有机化学家。他与两位克罗地亚诺贝尔化学奖得主合作:他的博士论文导师Vladimir Prelog和Lavoslav Ružička。他是“萨格勒布脂质体学院”的创始人,发现了一种新的鞘氨醇碱C20-sphingosine,并在RuŞer Bošković研究所的建立中发挥了重要作用。在此,我们向他们对克罗地亚科学及其他领域的贡献表示敬意,并分享迄今为止国防部档案中未发表的宝贵材料。
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引用次数: 0
Evaluation of the Radical-Scavenging Properties of Various Flavonols in Ethanol Environment: an ab initio Study 不同黄酮醇在乙醇环境中清除自由基性能的从头算研究
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/cca3449
Raluca Pop
The antioxidant properties of six flavonols -fisetin, galangin, gossipetin, kaempferol, morin and myricetin- have been investigated at HF/6-311G+(d,p) level of theory, using ethanol as solvent. Three known antioxidant mechanisms, namely HAT (hydrogen atom transfer), SET-PT (single electron transfer followed by proton transfer) and SPLET (sequential proton loss electron transfer) have been employed in order to evaluate the radical scavenging abilities of the investigated compounds. Thermodynamic parameters like bond dissociation energy (BDE), proton affinity (PA), electron transfer enthalpy (ETE), ionization potential (IP) and proton dissociation enthalpy (PDE) were calculated and the results were associated with the number and the positions of the hydroxyl groups, the geometry of the parent molecule and of the corresponding radicals, as well as with the electron spin distribution. Also, computations of global reactivity descriptors like HOMO-LUMO gap showed that an increased reactivity is related to the presence of the catechol moiety (gossipetin, myricetin, fisetin). The influence of the catecholic OH groups is also outlined by the HOMO energies, highest electron-donor ability being obtained for gossipetin, the flavonol with two catecholic moieties on rings A and B. According to the HAT mechanism, it has been outlined an enhanced antioxidant character of the 3-OH groups, followed by the hydroxyl groups attached to the phenyl ring B. The calculated values of the condensed Fukui functions, computed for a radical attack, are in good agreement with the above-mentioned results.
以乙醇为溶剂,在HF/6-311G+(d,p)理论水平上研究了六种黄酮醇——非瑟素、高良姜素、八卦素、山奈酚、桑色素和杨梅素的抗氧化性能。为了评估所研究化合物的自由基清除能力,已经采用了三种已知的抗氧化机制,即HAT(氢原子转移)、SET-PT(单电子转移,然后是质子转移)和SPLET(顺序质子损失电子转移)。计算了键离解能(BDE)、质子亲和力(PA)、电子转移焓(ETE)、电离势(IP)和质子离解焓(PDE)等热力学参数,并将结果与羟基的数量和位置、母体分子和相应自由基的几何结构相关联,以及电子自旋分布。此外,对HOMO-LUMO间隙等全局反应性描述符的计算表明,反应性的增加与儿茶酚部分(八卦素、杨梅素、非瑟素)的存在有关。邻苯二酚OH基团的影响也通过HOMO能量概述,八卦素(在环A和B上具有两个邻苯二酚部分的黄酮醇)获得了最高的电子供体能力。根据HAT机制,已经概述了3-OH基团增强的抗氧化特性,其次是连接在苯环B上的羟基。针对激进攻击计算的压缩Fukui函数的计算值与上述结果非常一致。
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引用次数: 1
The Effect of Selected Herb Extracts on Oxidative Stability of Vegetable Oils 草药提取物对植物油氧化稳定性的影响
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/cca3479
Barbara Soldo, N. Nikolov, Ivana Generalić Mekinić, I. Ljubenkov, Vida Šimat, Danijela Skroza, I. Anđelić
The aim of this study was to investigate the effect of different herb extracts on the oxidative stability of hemp, flax, sesame and sunflower seed oils by means of Rancimat test. The dominant phenolic acids in herb extracts were detected by HPLC, while fatty acid profiles of oils, before and after oxidation, were determined by GC-FID. As expected, autoxidation increased the content of saturated fatty acids. The sesame oil showed the longest oxidative stability (3.43 h), while the shortest induction period was obtained for the flax oil. Lemon balm and oregano extracts accelerated the oxidation of hemp and flax oil, while in all other cases the addition of extracts had a positive effect on oil oxidative stability. The best results were obtained for lemon balm extract added to sesame and sunflower oil which resulted with OSI values of 1.33 and 1.48, respectively, while extremely prooxidative activity was obtained for lemon balm extract added to the hemp oil.
本研究的目的是通过Rancimat试验研究不同草药提取物对大麻、亚麻、芝麻和葵花籽油氧化稳定性的影响。采用高效液相色谱法检测了中草药提取物中的主要酚酸,采用气相色谱-火焰离子化检测器测定了氧化前后油脂的脂肪酸组成。正如预期的那样,自氧化增加了饱和脂肪酸的含量。芝麻油表现出最长的氧化稳定性(3.43小时),而亚麻油的诱导期最短。柠檬风油精和牛至提取物加速了大麻和亚麻油的氧化,而在所有其他情况下,添加提取物对油的氧化稳定性有积极影响。将柠檬风油精提取物添加到芝麻油和葵花油中获得了最好的结果,其OSI值分别为1.33和1.48,而将柠檬风脂提取物添加到麻油中获得极强的抗氧化活性。
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引用次数: 5
Synthesis and Mesomorphic Properties of Novel Bent-shaped Naphthyl Diketones 新型弯曲萘二酮的合成及介晶性质
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/cca3541
Anđela Buljan, A. Knežević, I. Dokli, A. Lesac
The synthesis and liquid-crystalline properties are reported for novel naphthyl-based diketones incorporating variant terminal chains and lateral fluoro- substitution. Newly prepared materials exhibit a broad temperature range of the nematic phase. The study demonstrates how subtle structural modifications can be exploited to alter the efficiency of molecular packing and consequently the thermal behaviour.
本文报道了一种新型含异端链和横向氟取代的萘基二酮的合成及其液晶性质。新制备的材料具有较宽的向列相温度范围。该研究证明了如何利用细微的结构修饰来改变分子填充的效率,从而改变热行为。
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引用次数: 2
Electrofugality of Some Ferrocenylphenylmethyl Cations 某些二茂铁苯基甲基阳离子的电逸性
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/cca3553
S. Jurić, M. Marijan, O. Kronja
The electrofugality scale has been extended with new substituted ferrocenylphenylmethyl cations 1-4. Ef values were determined by applying the linear free energy relationship (LFER): log k = sf (Ef + Nf). Due to ability of the ferrocene moiety to efficiently stabilize the positive charge, ferrocenylphenylmethyl cations constitute a group of very powerful electrofuges (Ef > 1). Impact of the phenyl group in ferrocenylphenylmethyl derivatives on stabilization of the positive charge is considerably leveled by the ferrocenyl group, so the rate effect of the alkyl substituents (methyl, ethyl and tert-butyl) on the phenyl ring is suppressed, causing narrow range of Ef parameters. Lack of breakdown of Hammett-Brown plot if the rates for the complete set of substrates 1–5 have been correlated, indicates that the ferrocenyl group in α-position diminishes the stabilizing effects of electron-donating substituents as well.
用新的取代二茂铁苯基甲基阳离子1-4扩展了电铸性标度。通过应用线性自由能关系(LFER)确定Ef值:log k=sf(Ef+Nf)。由于二茂铁部分有效稳定正电荷的能力,二茂铁苯基甲基阳离子构成了一组非常强大的电铸物(Ef>1)。二茂铁苯基甲基衍生物中的苯基对正电荷稳定的影响被二茂铁基团显著地平抑,因此烷基取代基(甲基、乙基和叔丁基)对苯环的速率效应被抑制,导致Ef参数范围窄。如果整套底物1-5的速率相关,则缺乏Hammett-Brown图的分解,这表明α位的二茂铁基团也削弱了给电子取代基的稳定作用。
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引用次数: 1
An Efficient Synthesis and In vitro Cytostatic Activity of 5-Aminosulfonyl Uracil Derivatives 5-氨基磺酰基尿嘧啶衍生物的高效合成及其体外细胞抑制活性研究
IF 0.3 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2019-07-29 DOI: 10.5562/cca3567
Hamit Ismaili, Željka Ban, J. Matić, D. Saftić, Marijana Jukić, L. Glavaš‐Obrovac, B. Žinić
Efficient synthesis of 5-aminosulfonyl uracil derivatives 2-9 and results of their antiproliferative activity are provided. Sulfonylation of the amino group in 5-aminouracil 1 with selected arylsulfonyl chlorides occurs regioselectively when the reaction is carried out in pyridine at room temperature. Simple isolation of the products by recrystallization of the crude product mixture from aqueous methanol provides good to excellent yields. The prepared 5-aminosulfonyl uracil derivatives 2-9 were tested for the antiproliferative activity on a panel of seven tumor cell lines of different histological origin (HeLa, Caco-2, NCI-H358, Raji, HuT78, Jurkat, K562) and normal MDCK I cells. Derivatives 2-9 were found more efficient to lymphoma and leukemia cells compared to solid tumor and normal cells.
给出了5-氨基磺酰基尿嘧啶衍生物2-9的高效合成及其抗增殖活性的结果。5-氨基尿嘧啶1中的氨基与选定的芳基磺酰氯发生区域选择性磺化反应,当反应在室温下在吡啶中进行时。通过从甲醇水溶液中对粗产物混合物进行再结晶,简单地分离产物,可提供良好至极好的收率。制备的5-氨基磺酰基尿嘧啶衍生物2-9对7种不同组织学来源的肿瘤细胞系(HeLa、Caco-2、NCI-H358、Raji、HuT78、Jurkat、K562)和正常MDCK - 1细胞的抗增殖活性进行了测试。与实体瘤和正常细胞相比,衍生物2-9对淋巴瘤和白血病细胞更有效。
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引用次数: 1
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Croatica Chemica Acta
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