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Advancing in vivo reprogramming with synthetic biology 利用合成生物学推进体内重编程。
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-24 DOI: 10.1016/j.copbio.2024.103109
Farhana Islam, Mitchell R Lewis, James D Craig, Peyton M Leyendecker, Tara L Deans

Reprogramming cells will play a fundamental role in shaping the future of cell therapies by developing new strategies to engineer cells for improved performance and higher-order physiological functions. Approaches in synthetic biology harness cells’ natural ability to sense diverse signals, integrate environmental inputs to make decisions, and execute complex behaviors based on the health of the organism or tissue. In this review, we highlight strategies in synthetic biology to reprogram cells, and discuss how recent approaches in the delivery of modified mRNA have created new opportunities to alter cell function in vivo. Finally, we discuss how combining concepts from synthetic biology and the delivery of mRNA in vivo could provide a platform for innovation to advance in vivo cellular reprogramming.

通过开发新的策略来改造细胞,使其具有更好的性能和更高阶的生理功能,重编程细胞将在塑造未来细胞疗法方面发挥根本性的作用。合成生物学方法利用细胞的天然能力来感知各种信号,整合环境输入以做出决策,并根据生物体或组织的健康状况执行复杂的行为。在这篇综述中,我们将重点介绍合成生物学中对细胞进行重编程的策略,并讨论最近在传递经修饰的 mRNA 方面如何创造了改变体内细胞功能的新机会。最后,我们将讨论如何结合合成生物学和体内 mRNA 运送的概念,为推进体内细胞重编程提供创新平台。
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引用次数: 0
Spatial omics techniques and data analysis for cancer immunotherapy applications 应用于癌症免疫疗法的空间 omics 技术和数据分析。
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-22 DOI: 10.1016/j.copbio.2024.103111
Yue Zhang , Ren Yuan Lee , Chin Wee Tan , Xue Guo , Willa W-Y Yim , Jeffrey CT Lim , Felicia YT Wee , WU Yang , Malvika Kharbanda , Jia-Ying J Lee , Nye Thane Ngo , Wei Qiang Leow , Lit-Hsin Loo , Tony KH Lim , Radoslaw M Sobota , Mai Chan Lau , Melissa J Davis , Joe Yeong

In-depth profiling of cancer cells/tissues is expanding our understanding of the genomic, epigenomic, transcriptomic, and proteomic landscape of cancer. However, the complexity of the cancer microenvironment, particularly its immune regulation, has made it difficult to exploit the potential of cancer immunotherapy. High-throughput spatial omics technologies and analysis pipelines have emerged as powerful tools for tackling this challenge. As a result, a potential revolution in cancer diagnosis, prognosis, and treatment is on the horizon. In this review, we discuss the technological advances in spatial profiling of cancer around and beyond the central dogma to harness the full benefits of immunotherapy. We also discuss the promise and challenges of spatial data analysis and interpretation and provide an outlook for the future.

对癌细胞/组织的深入分析正在扩大我们对癌症基因组、表观基因组、转录组和蛋白质组情况的了解。然而,癌症微环境的复杂性,尤其是其免疫调节,使得癌症免疫疗法的潜力难以发挥。高通量空间 omics 技术和分析管道已成为应对这一挑战的有力工具。因此,一场潜在的癌症诊断、预后和治疗革命即将到来。在这篇综述中,我们将围绕和超越利用免疫疗法全部益处的中心教条,讨论癌症空间剖析的技术进展。我们还讨论了空间数据分析和解读的前景与挑战,并对未来进行了展望。
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引用次数: 0
Editorial overview: Tumor–stroma crosstalk: Shaping and characterizing the metabolic microenvironment of tumors 编辑综述:肿瘤-基质串扰:塑造和描述肿瘤的代谢微环境。
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-22 DOI: 10.1016/j.copbio.2024.103095
Seth Parker, Thekla Cordes
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引用次数: 0
Medical properties, market potential, and microbial production of golden polyketide curcumin for food, biomedical, and cosmetic applications 用于食品、生物医学和化妆品的黄金多酮姜黄素的医疗特性、市场潜力和微生物生产
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-22 DOI: 10.1016/j.copbio.2024.103112
Selma Beganovic, Christoph Wittmann

Curcumin, a potent plant polyketide in turmeric, has gained recognition for its outstanding health benefits, including anti-inflammatory, antioxidant, and anticancer effects. Classical turmeric farming, which is widely used to produce curcumin, is linked to deforestation, soil degradation, excessive water use, and reduced biodiversity. In recent years, the microbial synthesis of curcumin has been achieved and optimized through novel strategies, offering increased safety, improved sustainability, and the potential to revolutionize production. Here, we discuss recent breakthroughs in microbial engineering and fermentation techniques, as well as their capacity to increase the yield, purity, and cost-effectiveness of curcumin production. The utilization of microbial systems not only addresses supply chain limitations but also helps meet the growing demand for curcumin in various industries, including pharmaceuticals, foods, and cosmetics.

姜黄素是姜黄中的一种强效植物多酮,因其卓越的健康功效(包括抗炎、抗氧化和抗癌作用)而获得认可。广泛用于生产姜黄素的传统姜黄种植与森林砍伐、土壤退化、过度用水和生物多样性减少有关。近年来,姜黄素的微生物合成已通过新颖的策略得以实现和优化,从而提高了安全性和可持续性,并有可能彻底改变生产方式。在此,我们将讨论微生物工程和发酵技术的最新突破,以及它们在提高姜黄素产量、纯度和成本效益方面的能力。利用微生物系统不仅能解决供应链的限制,还有助于满足制药、食品和化妆品等各行各业对姜黄素日益增长的需求。
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引用次数: 0
Microbial synthesis of health-promoting inositols 微生物合成促进健康的肌醇。
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-22 DOI: 10.1016/j.copbio.2024.103114
Ken-ichi Yoshida , Michael Bott

D-chiro-inositol and scyllo-inositol are known for their health-promoting properties and promising as ingredients for functional foods. Strains of Bacillus subtilis and Corynebacterium glutamicum were created by metabolic engineering capable of inexpensive production of these two rare inositols from myo-inositol, which is the most common inositol in nature. In addition, further modifications have enabled the synthesis of the two rare inositols from the much-cheaper carbon sources, glucose or sucrose.

D-chiro-ositol 和 scyllo-ositol 因其促进健康的特性而闻名,有望成为功能食品的成分。通过代谢工程创造了枯草芽孢杆菌和谷氨酸棒状杆菌菌株,它们能够从肌醇(自然界中最常见的肌醇)中廉价生产这两种稀有肌醇。此外,通过进一步改造,还能从便宜得多的碳源葡萄糖或蔗糖中合成这两种稀有肌醇。
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引用次数: 0
Precise control methods of the physicochemical properties of nanoparticles for personalized medicine 用于个性化医疗的纳米粒子理化特性精确控制方法
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-20 DOI: 10.1016/j.copbio.2024.103108
Noriko Nakamura , Seiichi Ohta

Biomedical applications of nanoparticles (NPs) have attracted much attention. With the advancement of personalized medicine, researchers are now proposing the concept that the design of NPs needs to be optimized according to the individual patient. To realize this concept, an important question is how precisely we can tailor the physicochemical properties of NPs, such as size, shape, and surface chemistry, using current technology. This review discusses recent advances and challenges in the precise control of the size, shape, and surface chemistry of NPs. While control methods have advanced significantly over the past 20 years, the size, shape, and surface chemistry of currently available NPs vary by type, requiring careful selection based on the targeted disease, organ, and patient.

纳米粒子(NPs)的生物医学应用备受关注。随着个性化医疗的发展,研究人员现在提出了一个概念,即需要根据患者的个体情况优化 NPs 的设计。要实现这一理念,一个重要的问题是如何利用现有技术精确定制 NPs 的物理化学特性,如大小、形状和表面化学性质。本综述将讨论在精确控制 NPs 大小、形状和表面化学性质方面的最新进展和挑战。虽然控制方法在过去 20 年中取得了长足进步,但目前可用的 NPs 的大小、形状和表面化学性质因类型而异,需要根据目标疾病、器官和患者进行仔细选择。
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引用次数: 0
Combining enzyme and metabolic engineering for microbial supply of therapeutic phytochemicals 结合酶工程和代谢工程,利用微生物提供治疗用植物化学物质
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-19 DOI: 10.1016/j.copbio.2024.103110
Maxence Holtz, Carlos G Acevedo-Rocha, Michael K Jensen

The history of pharmacology is deeply intertwined with plant-derived compounds, which continue to be crucial in drug development. However, their complex structures and limited availability in plants challenge drug discovery, optimization, development, and industrial production via chemical synthesis or natural extraction. This review delves into the integration of metabolic and enzyme engineering to leverage micro-organisms as platforms for the sustainable and reliable production of therapeutic phytochemicals. We argue that engineered microbes can serve a triple role in this paradigm: facilitating pathway discovery, acting as cell factories for scalable manufacturing, and functioning as platforms for chemical derivatization. Analyzing recent progress and outlining future directions, the review highlights microbial biotechnology’s transformative potential in expanding plant-derived human therapeutics’ discovery and supply chains.

药理学的历史与植物提取的化合物深深地交织在一起,植物提取的化合物在药物开发中仍然至关重要。然而,这些化合物结构复杂,在植物中的可用性有限,这给药物发现、优化、开发以及通过化学合成或天然提取进行工业化生产带来了挑战。本综述深入探讨了如何整合代谢工程和酶工程,利用微生物作为可持续、可靠地生产治疗性植物化学物质的平台。我们认为,工程微生物可在这一模式中发挥三重作用:促进途径发现、充当可扩展生产的细胞工厂,以及作为化学衍生平台发挥作用。本综述分析了最近的进展并概述了未来的发展方向,强调了微生物生物技术在扩大植物源人类疗法的发现和供应链方面的变革潜力。
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引用次数: 0
Neutrophils, an emerging new therapeutic platform 中性粒细胞,一个新兴的治疗平台
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-14 DOI: 10.1016/j.copbio.2024.103106
Alejandra López-Arredondo , José A Cruz-Cardenas , Jorge A Cázares-Preciado , Nicholas E Timmins , Marion EG Brunck

Neutrophils possess unique characteristics that render them indispensable to health, and patients with irregular neutrophil counts or functions suffer from increased morbidity and mortality. As neutrophils are short-lived postmitotic cells, genetic aberrations cannot be corrected directly in neutrophils and must be targeted in their progenitors. Neutrophils are increasingly being contemplated for a range of therapeutic applications, including restoration or modulation of immune function and targeting of solid tumors. This review addresses the state-of-the-art in neutrophil transfusions and their possible applications for infectious disease prevention and treatment. It offers a landscape of the most recent gene therapy approaches to address neutrophil-related genetic diseases. We also discuss how ongoing research could broaden the applicability of neutrophil-based therapies to solid cancer treatments and beyond.

中性粒细胞具有独特的特性,是健康不可或缺的物质,中性粒细胞数量或功能不正常的患者发病率和死亡率都会增加。由于中性粒细胞是寿命较短的凋亡后细胞,因此无法直接在中性粒细胞中纠正基因畸变,而必须以其祖细胞为目标。中性粒细胞正越来越多地被考虑用于一系列治疗应用,包括恢复或调节免疫功能和靶向实体瘤。这篇综述探讨了中性粒细胞输注的最新进展及其在传染病预防和治疗中的可能应用。它介绍了解决中性粒细胞相关遗传疾病的最新基因治疗方法。我们还讨论了正在进行的研究如何将基于中性粒细胞的疗法应用于实体肿瘤治疗及其他领域。
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引用次数: 0
Biotechnological polyphosphate as an opportunity to contribute to the circularization of the phosphate economy 以生物技术聚磷酸盐为契机,促进磷酸盐经济的循环利用
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-13 DOI: 10.1016/j.copbio.2024.103107
Philipp Demling, Makarius Baier, Alexander Deitert, Jana Fees, Lars M Blank

Polyphosphates, chains of polymerized phosphate subunits, are used as food additives for various applications such as conservation, water retention, and pH buffering. Currently, the value chain of phosphates is linear, based on mining fossil phosphate rock, which is anticipated to be depleted in a few hundred years. With no replacement available, a transition to a circular phosphate economy, to which biological systems can contribute, is required. Baker’s yeast can hyperaccumulate phosphate from various phosphate-rich waste streams and form polyphosphates, which can be used directly or as polyphosphate-rich yeast extract with enhanced properties in the food industry. By maturing the technology to an industrial level and allowing upcycled waste streams for food applications, substantial contributions to a sustainable phosphate economy can be achieved.

聚磷酸盐是由聚合磷酸盐亚基组成的链,被用作食品添加剂,具有保存、保水和缓冲 pH 值等多种用途。目前,磷酸盐的价值链是线性的,以开采化石磷酸盐岩为基础,而化石磷酸盐岩预计将在几百年后枯竭。在没有替代品的情况下,需要过渡到循环磷酸盐经济,而生物系统可以为此做出贡献。贝克酵母能从各种富含磷酸盐的废物流中过度积累磷酸盐,并形成多磷酸盐,这些多磷酸盐可直接使用,或作为富含多磷酸盐的酵母提取物用于食品工业,并增强其特性。通过使该技术成熟到工业化水平,并允许食品应用中的废物流进行再循环,可以为可持续磷酸盐经济做出重大贡献。
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引用次数: 0
Can biotechnology lead the way toward a sustainable pharmaceutical industry? 生物技术能否引领可持续发展的制药业?
IF 7.7 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-03-11 DOI: 10.1016/j.copbio.2024.103100
Deniz Etit , Samir Meramo , Ólafur Ögmundarson , Michael K Jensen , Sumesh Sukumara

The impact-intensive and rapidly growing pharmaceutical industry must ensure its sustainability. This study reveals that environmental sustainability assessments have been conducted for only around 0.2% of pharmaceuticals, environmental impacts have significant variations among the assessed products, and different impact categories have not been consistently studied. Highly varied impacts require assessing more products to understand the industry’s sustainability status. Reporting all impact categories will be crucial, especially when comparing production technologies. Biological production of (semi)synthetic pharmaceuticals could reduce their environmental costs, though the high impacts of biologically produced monoclonal antibodies should also be optimized. Considering the sustainability potential of biopharmaceuticals from economic, environmental, and social perspectives, collaboratively guiding their immense market growth would lead to the industry’s sustainability transition.

制药业是影响密集型行业,发展迅速,必须确保其可持续发展。本研究显示,仅对约 0.2% 的制药产品进行了环境可持续性评估,被评估产品对环境的影响差异很大,对不同影响类别的研究也不一致。要了解该行业的可持续发展状况,就需要对更多产品进行评估。报告所有影响类别至关重要,尤其是在比较生产技术时。生物生产(半)合成药物可降低其环境成本,但生物生产单克隆抗体的高影响也应得到优化。从经济、环境和社会角度考虑生物制药的可持续发展潜力,共同引导其巨大的市场增长,将有助于该行业的可持续发展转型。
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引用次数: 0
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Current opinion in biotechnology
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