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A Network Medical Framework based on Inflammatory Genes to Identify Drug Candidates for Abdominal Aortic Aneurysms. 基于炎症基因识别腹主动脉瘤候选药物的网络医学框架。
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467217666230517104426
Xiaoyang Niu, Bing Wang

Background: Clinically, abdominal aortic aneurysms (AAA) can be treated with surgical intervention, but there is currently no effective drug for the disease.

Methods: This study analyzed the biomedical data of single-cell RNA sequencing (scRNA-seq), RNA-seq and the network medical data of drug-target interaction as well as protein-protein interaction to identify key targets and potential drug compounds of AAA.

Results: Firstly, we identified 10 types of cells from AAA and nonaneurysmal control samples and screened monocyte, mast cell, smooth muscle cell and 327 genes showing significant differences between non-dilated PVATs and dilated PVATs. To further explore the association of three types of cells in AAA, we screened the common DEGs associated with the three types of cells and then identified 10 potential therapeutic targets for AAA. SLC2A3 and IER3 were the key targets that were the most closely related to immune score and significantly related to inflammatory pathways. We then designed a network-based proximity measure to identify potential drugs targeting SLC2A3. Finally, with computer simulation, we found that the compound with the highest affinity to SLC2A3 protein was DB08213, which was embedded into the SLC2A3 protein cavity and formed close contact with various amino acid residues, and was stable during the 100-ns MD simulation.

Conclusion: This study provided a computational framework for drug design and development. It revealed key targets and potential therapeutic drug compounds for AAA, which might contribute to the drug development for AAA.

背景:临床上,腹主动脉瘤(AAA)可以通过手术治疗,但目前尚无有效的药物治疗该病。方法:本研究通过分析单细胞RNA测序(scRNA-seq)、RNA-seq以及药物-靶点相互作用和蛋白-蛋白相互作用的网络医学数据,鉴定AAA的关键靶点和潜在药物化合物。结果:首先,我们从AAA和非动脉瘤对照样本中鉴定出10种细胞,筛选出单核细胞、肥大细胞、平滑肌细胞和327个基因,显示非扩张型pvat和扩张型pvat之间存在显著差异。为了进一步探讨三种细胞在AAA中的相关性,我们筛选了与三种细胞相关的常见deg,确定了AAA的10个潜在治疗靶点,其中SLC2A3和IER3是与免疫评分关系最密切、与炎症通路关系显著的关键靶点。然后,我们设计了一个基于网络的接近度量来识别靶向SLC2A3的潜在药物。最后,通过计算机模拟,我们发现与SLC2A3蛋白亲和力最高的化合物是DB08213,该化合物嵌入SLC2A3蛋白腔内,与各种氨基酸残基形成紧密接触,在100-ns MD模拟中保持稳定。结论:本研究为药物设计和开发提供了一个计算框架。揭示了AAA的关键靶点和潜在的治疗药物化合物,可能有助于AAA的药物开发。
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引用次数: 0
Grp94 Inhibitor HCP1 Suppressed the Replication of SVA in BHK-21 Cells and PK-15 Cells. Grp94抑制剂HCP1抑制SVA在BHK-21细胞和PK-15细胞中的复制
IF 2.9 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467217666230705120856
Shuo Wang, XiaoLing Cui, Ren Hui, Wen Yao, BaoXiang Zhao, Jun Li, JunYing Miao

Background: Glucoregulatory protein 94 (Grp94) is necessary for the post-viral life cycle and plays a quality control role in viral proteins, but the role of Grp94 in regulating viral replication in host cells is not well known. Therefore, finding a compound that can regulate Grp94 will help us to study the mechanism of viral replication. Previously, we synthesized a coumarin pyrazoline derivative HCP1 that is an effective inhibitor of Grp94. We suppose that HCP1 may inhibit viral replication.

Objective: This study aimed to investigate the effect of HCP1 on the replication ability of Senecavirus A (SVA), so as to provide a target and a leading compound for revealing the pathogenic mechanism of the virus and developing antiviral drugs.

Methods: Rat cell lines BHK-21 and porcine cell lines PK-15 were infected with SVA, and the infected cells were treated with different concentrations of HCP1. The cell viability (CCK-8), virus titer (TCID50), autophagy level, and Grp94 expression were measured.

Results: The results showed that a low concentration of HCP1 decreased viral titer and viral load in BHK-21 and PK-15 cells, and 5μM HCP1 significantly decreased the expression of SVA VP2 protein. In addition, SVA infection can lead to an increased level of autophagy, and HCP1 can inhibit host cell autophagy caused by SVA infection, thereby inhibiting viral replication and infection.

Conclusion: These findings reveal that Grp94 is a key factor in controlling SVA replication, and its inhibitor HCP1 suppresses SVA replication by inhibiting the increase of Grp94 protein level and autophagy induced by SVA. This study will contribute to the development of a new class of small-molecule antiviral drugs.

葡萄糖调节蛋白94(Grp94)在病毒后生命周期中是必需的,并在病毒蛋白中发挥质量控制作用,但Grp94在调节病毒在宿主细胞中复制中的作用尚不清楚。因此,找到一种能够调节Grp94的化合物将有助于我们研究病毒复制的机制。先前,我们合成了香豆素-吡唑啉衍生物HCP1,它是Grp94的有效抑制剂。我们推测HCP1可能抑制病毒复制。本研究旨在研究HCP1对Senecavirus A(SVA)复制能力的影响,为揭示病毒的致病机制和开发抗病毒药物提供靶点和先导化合物。用SVA感染大鼠细胞系BHK-21和猪细胞系PK-15,并用不同浓度的HCP1处理感染的细胞。测定细胞活力(CCK-8)、病毒滴度(TCID50)、自噬水平和Grp94表达。结果表明,低浓度HCP1可降低BHK-21和PK-15细胞的病毒滴度和载量,5μM HCP1可显著降低SVA VP2蛋白的表达。此外,SVA感染可导致自噬水平增加,HCP1可抑制SVA感染引起的宿主细胞自噬,从而抑制病毒复制和感染。结论:Grp94是控制SVA复制的关键因子,其抑制剂HCP1通过抑制Grp94蛋白水平的升高和SVA诱导的自噬来抑制SVA复制。这项研究将有助于开发一类新的小分子抗病毒药物。
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引用次数: 0
E2F1 Reduces Sorafenib's Sensitivity of Esophageal Carcinoma Cells via Modulating the miR-29c-3p/COL11A1 Signaling Axis. E2F1通过调节miR-29c-3p/COL11A1信号轴降低索拉非尼对食管癌细胞的敏感性
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467216666230306101653
Zhifeng Ma, Ting Zhu, Haiyong Wang, Bin Wang, Linhai Fu, Guangmao Yu

Objective: Esophageal carcinoma (ESCA) is a common malignancy characterized by high morbidity and mortality. Our work managed to dissect the modulatory mechanism of E2F1/miR-29c-3p/COL11A1 in the malignant progression and sensitivity of ESCA cells to sorafenib.

Methods: Via bioinformatics approaches, we identified the target miRNA. Subsequently, CCK-8, cell cycle analysis, and flow cytometry were used to check the biological influences of miR-29c-3p on ESCA cells. TransmiR, mirDIP, miRPathDB, and miRDB databases were used as tools for the prediction of upstream transcription factors and downstream genes of miR-29c-3p. The targeting relationship of genes was detected via RNA immunoprecipitation and chromatin immunoprecipitation, which was further validated by dual-luciferase assay. Finally, in vitro experiments revealed the way E2F1/miR-29c-3p/COL11A1 affected sorafenib's sensitivity, and in vivo experiments were used to verify the way E2F1 and sorafenib impacted ESCA tumor growth.

Results: miR-29c-3p, downregulated in ESCA, could suppress ESCA cell viability, arrest the cell cycle in the G0/G1 phase, and impel apoptosis. E2F1 was found to be upregulated in ESCA and it could abate the transcriptional activity of miR-29c-3p. COL11A1 was found to be a downstream target of miR-29c-3p to enhance cell viability, induce cell cycle arrest in S phase, and constrain apoptosis. Cellular and animal experiments together demonstrated that E2F1 abated the sorafenib's sensitivity of ESCA cells via miR-29c-3p/COL11A1.

Conclusion: E2F1 affected the viability, cell cycle, and apoptosis of ESCA cells by modulating miR-29c-3p/COL11A1, and it attenuated the sensitivity of ESCA cells to sorafenib, shedding new light on the treatment of ESCA.

目的:食管癌是一种常见的恶性肿瘤,具有高发病率和高死亡率的特点。我们的工作成功地解剖了E2F1/miR-29c-3p/COL11A1在ESCA细胞的恶性进展和对索拉非尼的敏感性中的调节机制。方法:通过生物信息学方法鉴定目标miRNA。随后,通过CCK-8、细胞周期分析和流式细胞术检测miR-29c-3p对ESCA细胞的生物学影响。使用TransmiR、mirDIP、miRPathDB和miRDB数据库作为预测miR-29c-3p上游转录因子和下游基因的工具。通过RNA免疫沉淀和染色质免疫沉淀检测基因的靶向关系,并通过双荧光素酶实验进一步验证。最后,体外实验揭示了E2F1/miR-29c-3p/COL11A1影响索拉非尼敏感性的方式,体内实验验证了E2F1和索拉非尼影响ESCA肿瘤生长的方式。结果:miR-29c-3p在ESCA中下调,可抑制ESCA细胞活力,阻滞细胞周期于G0/G1期,促进细胞凋亡。我们发现E2F1在ESCA中表达上调,它可以降低miR-29c-3p的转录活性。COL11A1被发现是miR-29c-3p的下游靶点,可以增强细胞活力,诱导细胞周期阻滞在S期,并抑制细胞凋亡。细胞和动物实验共同表明,E2F1通过miR-29c-3p/COL11A1降低了ESCA细胞对索拉非尼的敏感性。结论:E2F1通过调节miR-29c-3p/COL11A1影响ESCA细胞的活力、细胞周期和凋亡,并减弱ESCA细胞对索拉非尼的敏感性,为ESCA的治疗提供新的视角。
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引用次数: 0
Antiarrhythmic Potential of Epicardial Botulinum Toxin Injection for Suppression of Postoperative Atrial Fibrillation. 心外膜肉毒毒素注射抑制术后房颤的抗心律失常电位。
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467217666230620114931
Michael Spartalis, Eleftherios Spartalis, Dimitrios Iliopoulos, Gerasimos Siasos

Following heart surgery, postoperative atrial fibrillation (AF) is the most prevalent kind of secondary AF and the most frequent adverse event. Postoperative AF is related to a number of unfavorable cardiac outcomes, such as heart failure, stroke, and death. However, the pharmacological treatment for postoperative AF is only relatively efficient and is frequently linked to detrimental complications, including symptomatic bradycardia with atrioventricular block due to rate control drugs and elevated hemorrhage hazard attributable to the administration of anticoagulants. Ablation procedures also result in the irreversible damage of cardiac anatomic structures, which may have long-term negative implications on heart performance. As a result, there is an unmet demand for treatments that can minimize the incidence of postoperative AF in an effective and safe manner. Botulinum toxin is an established neurotoxin that has progressively gained use in every medical science domain. It hinders the propagation of impulses across nerve fibers without causing immediate damage to the cardiac tissue. The transient feature of botulinum toxin action and the eventual restoration of the autonomic nervous system transmission are undeniably advantageous and may render botulinum toxin a potential and feasible treatment approach for postoperative AF.

心脏手术后,术后心房颤动(AF)是最常见的继发性心房颤动,也是最常见的不良事件。术后房颤与许多不利的心脏结局有关,如心力衰竭、中风和死亡。然而,术后房颤的药物治疗只是相对有效的,并且经常与有害的并发症有关,包括由于控制速率药物引起的症状性心动过缓伴房室传导阻滞和抗凝剂引起的出血风险升高。消融术还会导致心脏解剖结构的不可逆损伤,这可能对心脏功能产生长期的负面影响。因此,对于能够以有效和安全的方式将术后房颤发生率降至最低的治疗方法的需求尚未得到满足。肉毒杆菌毒素是一种公认的神经毒素,已逐渐在每个医学领域获得使用。它可以阻止脉冲在神经纤维间的传播,而不会对心脏组织造成直接损害。肉毒杆菌毒素作用的短暂性和自主神经系统传递的最终恢复是不可否认的优势,并可能使肉毒杆菌毒素成为术后房颤的潜在和可行的治疗方法。
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引用次数: 0
Differential Kat3 Coactivator Usage Regulates Brain Metabolism and Neuronal Differentiation. 不同的Kat3辅激活因子使用调节脑代谢和神经元分化。
IF 2.9 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467217666230817092415
Erasmus Kofi Poku, Masaya Ono, Yusuke Higuchi, Junie Chea, Elizabeth Melendez, Jia-Ling Teo, Cu Nguyen, Nyam-Osor Chimge, Michael Kahn

Introduction: Our previous work has demonstrated significant effects on the oxidative stress response, mitochondrial function, and oxidative phosphorylation in the livers and intestines of p300 S89A knockin (S89AKI) mice. We now show that this mutation is also associated with brain metabolic defects and neuronal differentiation.

Methods: p300 S89A edited P19 cells, and S89AKI mice demonstrated metabolic and neuronal differentiation defects based on proteomic, cell biological and PET imaging studies.

Results: The metabolic and differentiation defects associated with the p300 S89A knockin mutation could be corrected both in vitro and in vivo utilizing the small molecule CBP/beta-catenin antagonist ICG-001.

Conclusion: Rebalancing the equilibrium between CBP/β-catenin versus p300/β-catenin associated transcription, utilizing the small molecule CBP/beta-catenin antagonist ICG-001, enhances mitochondrial oxidative phosphorylation, metabolic function, and neuronal differentiation and may be able to ameliorate the cognitive decline seen in neurodegenerative disorders, including Alzheimer's Disease.

我们之前的工作已经证明p300 S89A敲入(S89AKI)小鼠的肝脏和肠道的氧化应激反应、线粒体功能和氧化磷酸化有显著影响。我们现在表明,这种突变也与脑代谢缺陷和神经元分化有关。方法:基于蛋白质组学、细胞生物学和PET成像研究,p300 S89A编辑的P19细胞和S89AKI小鼠表现出代谢和神经元分化缺陷。结果:利用小分子CBP/ β -连环蛋白拮抗剂ICG-001,可以在体外和体内纠正与p300 S89A敲入基因突变相关的代谢和分化缺陷。结论:利用小分子CBP/β-catenin拮抗剂ICG-001,重新平衡CBP/β-catenin与p300/β-catenin相关转录之间的平衡,增强线粒体氧化磷酸化、代谢功能和神经元分化,并可能改善包括阿尔茨海默病在内的神经退行性疾病的认知能力下降。
{"title":"Differential Kat3 Coactivator Usage Regulates Brain Metabolism and Neuronal Differentiation.","authors":"Erasmus Kofi Poku, Masaya Ono, Yusuke Higuchi, Junie Chea, Elizabeth Melendez, Jia-Ling Teo, Cu Nguyen, Nyam-Osor Chimge, Michael Kahn","doi":"10.2174/1874467217666230817092415","DOIUrl":"10.2174/1874467217666230817092415","url":null,"abstract":"<p><strong>Introduction: </strong>Our previous work has demonstrated significant effects on the oxidative stress response, mitochondrial function, and oxidative phosphorylation in the livers and intestines of p300 S89A knockin (S89AKI) mice. We now show that this mutation is also associated with brain metabolic defects and neuronal differentiation.</p><p><strong>Methods: </strong>p300 S89A edited P19 cells, and S89AKI mice demonstrated metabolic and neuronal differentiation defects based on proteomic, cell biological and PET imaging studies.</p><p><strong>Results: </strong>The metabolic and differentiation defects associated with the p300 S89A knockin mutation could be corrected both in vitro and in vivo utilizing the small molecule CBP/beta-catenin antagonist ICG-001.</p><p><strong>Conclusion: </strong>Rebalancing the equilibrium between CBP/β-catenin versus p300/β-catenin associated transcription, utilizing the small molecule CBP/beta-catenin antagonist ICG-001, enhances mitochondrial oxidative phosphorylation, metabolic function, and neuronal differentiation and may be able to ameliorate the cognitive decline seen in neurodegenerative disorders, including Alzheimer's Disease.</p>","PeriodicalId":10865,"journal":{"name":"Current molecular pharmacology","volume":" ","pages":"e170823219875"},"PeriodicalIF":2.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10396762","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Comprehensive Review of Essential Aspects of Molecular Pathophysiological Mechanisms with Emerging Interventions for Sarcopenia in Older People. 老年人肌肉减少症的分子病理生理机制和新兴干预措施的基本方面的综合综述。
IF 2.9 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467216666230308142137
Priyanka Prajapati, Anand Kumar, Rishabh Chaudary, Shubhada Mangrulkar, Malti Arya, Sapana Kushwaha

Background: As people age, physical impairments may have a deleterious role on skeletal muscles. Sarcopenia Clinical Practice Guidelines 2017 and the European Working Group on Sarcopenia in older people are two organizations that have published essential guidelines on the definition of "Sarcopenia". Sarcopenia is a geriatric syndrome, characterized by skeletal muscle mass degeneration brought on by ageing, which lowers muscular function and quality. Moreover, Sarcopenia can be classified as primary or age-associated Sarcopenia and secondary Sarcopenia. Also, secondary Sarcopenia occurs when other diseases such as diabetes, obesity, cancer, cirrhosis, myocardial failure, chronic obstructive pulmonary disease, and inflammatory bowel disease also contribute to muscle loss. Furthermore, Sarcopenia is linked with a high risk of negative outcomes, considering a gradual reduction in physical mobility, poor balance, and increased fracture risks which ultimately leads to poor quality of life.

Objective: In this comprehensive review, we have elaborated on the pathophysiology, and various signaling pathways linked with Sarcopenia. Also, discussed the preclinical models and current interventional therapeutics to treat muscle wasting in older patients.

Conclusion: In a nutshell, a comprehensive description of the pathophysiology, mechanisms, animal models, and interventions of Sarcopenia. We also shed light on pharmacotherapeutics present in clinical trials which are being developed as potential therapeutic options for wasting diseases. Thus, this review could fill in the knowledge gaps regarding Sarcopenia-related muscle loss and muscle quality for both researchers and clinicians.

背景:随着人们年龄的增长,身体损伤可能对骨骼肌产生有害作用。2017年肌少症临床实践指南和欧洲老年人肌少症工作组是两个发布了关于“肌少症”定义的基本指南的组织。骨骼肌减少症是一种老年综合症,其特点是骨骼肌质量退化带来的老化,这降低了肌肉的功能和质量。此外,肌肉减少症可分为原发性或与年龄相关的肌肉减少症和继发性肌肉减少症。此外,继发性肌肉减少症发生时,其他疾病,如糖尿病、肥胖、癌症、肝硬化、心肌衰竭、慢性阻塞性肺病和炎症性肠病也会导致肌肉损失。此外,考虑到身体活动能力逐渐减少、平衡能力差和骨折风险增加,最终导致生活质量下降,骨骼肌减少症与负面结果的高风险相关。目的:在这篇全面的综述中,我们详细阐述了与肌少症相关的病理生理学和各种信号通路。讨论了老年肌肉萎缩的临床前模型和目前的介入治疗方法。结论:概括地说,对肌少症的病理生理、机制、动物模型和干预措施进行了全面的描述。我们还阐明了临床试验中正在开发的药物治疗方法,这些药物治疗方法是消耗性疾病的潜在治疗选择。因此,本综述可以为研究人员和临床医生填补关于肌少症相关肌肉损失和肌肉质量的知识空白。
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引用次数: 0
CD73 Blockade Alleviated Hepatic Fibrosis via Inhibiting Hepatic Stellate Cells Proliferation and Activation. CD73阻断通过抑制肝星状细胞增殖和活化减轻肝纤维化。
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467216666230322113039
Lan Yang, Zhao-Wei Gao, Xia-Nan Wu, Chong Liu, Juan Zhang, Hui-Zhong Zhang, Ke Dong

Background: Liver fibrosis is associated with the activation of hepatic stellate cells (HSCs). Inhibition of HSCs activation is a strategy for alleviating hepatic fibrogenesis. CD73 is involved in liver disease development, while the mechanism remains unclear.

Objective: This study aimed to investigate the effect of CD73 targeting inhibition on liver fibrosis.

Methods: Intraperitoneal injection of CCl4 was used to induce liver fibrosis in mice models. Adenosine 5'-(α, β-methylene) diphosphate sodium salt (APCP) was used for CD73 blockade. The siRNA was used to induce CD73 knockdown in HSCs. LX2 and HSC-T6 were used to investigate the role of CD73 in HSCs activation in vitro.

Results: The results showed that APCP treatment could alleviate hepatic fibrosis. In fibrotic liver tissues, CD73 exhibited a positive correlation with markers of HSCs activation. Furthermore, APCP treatment and CD73 knockdown could inhibit HSCs (LX2 and HSC-T6) activation and proliferation. By using RNA sequencing of liver tissues from control, CCl4-mice, and APCP-treated mice, 851 genes that were significantly changed in CCl4 mice (vs. control) were reversed by APCP treatment. These genes were mainly enriched in cell division-associated biological processes. Moreover, we found that CD73 might be associated with autophagy in HSCs. In fibrotic liver tissues and HSCs, ATG5 and Beclin1 expression could be downregulated by CD73 knockdown and APCP treatment.

Conclusion: This study demonstrated the effects and mechanism of CD73 in HSCs activation and proliferation, which presents the therapeutical potential of CD73 blockage for liver fibrosis.

背景:肝纤维化与肝星状细胞(hsc)的活化有关。抑制造血干细胞的激活是缓解肝纤维化的一种策略。CD73参与肝脏疾病的发展,但其机制尚不清楚。目的:探讨CD73靶向抑制对肝纤维化的影响。方法:采用腹腔注射CCl4诱导小鼠肝纤维化模型。用腺苷5′-(α, β-亚甲基)二磷酸钠盐(APCP)阻断CD73。siRNA在造血干细胞中诱导CD73敲低。利用LX2和HSC-T6研究CD73在体外活化hsc中的作用。结果:APCP治疗可减轻肝纤维化。在纤维化肝组织中,CD73与造血干细胞激活标志物呈正相关。此外,APCP处理和CD73敲除可抑制hsc (LX2和HSC-T6)的活化和增殖。通过对对照组、CCl4小鼠和APCP处理小鼠的肝组织进行RNA测序,APCP处理逆转了CCl4小鼠(与对照组相比)中851个显著改变的基因。这些基因主要富集于细胞分裂相关的生物学过程中。此外,我们发现CD73可能与造血干细胞的自噬有关。在纤维化肝组织和hsc中,CD73敲除和APCP治疗可下调ATG5和Beclin1的表达。结论:本研究证实了CD73在造血干细胞活化和增殖中的作用及其机制,提示了CD73阻断治疗肝纤维化的潜力。
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引用次数: 0
A Deeply Quiescent Subset of CML LSC depend on FAO yet Avoid Deleterious ROS by Suppressing Mitochondrial Complex I. CML LSC的一个深度静止亚群依赖FAO,但通过抑制线粒体复合体I来避免有害的ROS。
IF 2.9 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467217666230906092236
Nyam-Osor Chimge, Min-Hsuan Chen, Cu Nguyen, Yuqi Zhao, Xiwei Wu, Paulina Garcia Gonzalez, Heather Ogana, Samantha Hurwitz, Jia-Ling Teo, Xiaolong Chen, Juan Du, Victor Jin, Yong-Mi Kim, Masaya Ono, Rafael J Argüello, Michael Kahn

Background and objective: Disease relapse and therapy resistance remain serious impediments to treating cancer. Leukemia stem cells (LSC) are therapy resistant and the cause of relapse. A state of deep quiescence appears to enable cancer stem cells (CSC) to acquire new somatic mutations essential for disease progression and therapy resistance. Both normal hematopoietic stem cells (HSC) and LSC share many common features, thereby complicating the safe elimination of LSC. A recent study demonstrated that long lived normal oocytes exist without mitochondrial complex I (MC-1), expressing it in a developmentally regulated fashion, thereby mitigating their vulnerability to ROS. Quiescent CSC rely on mitochondrial FAO, without complex I expression, thereby avoiding the generation of damaging ROS, similar to long lived normal human stem cells. A deeper understanding of the biology of therapy resistance is important for the development of optimal strategies to attain complete leukemia cures.

Methods: Here, using scRNA-sequencing and ATAC-seq on primary chronic myelogenous leukemia (CML) patient samples, combined with bioinformatics analyses, we further examine the heterogeneity of a previously characterized in vitro imatinib-selected CD34-CD38- CML LSC population. We utilized a series of functional analyses, including single-cell metabolomic and Seahorse analyses, to validate the existence of the deepest quiescent leukemia initiators (LI) subset.

Results: Current study revealed heterogeneity of therapy resistant LSC in CML patients and their existence of two functionally distinct states. The most deeply quiescent LI suppress the expression of MC-1, yet are highly dependent on fatty acid oxidation (FAO) for their metabolic requirements and ATAC-seq demonstrated increased chromatin accessibility in this population, all consistent with an extremely primitive, quiescent stemness transcriptional signature. Importantly, the specific CREB binding protein (CBP)/β-catenin antagonist ICG-001 initiates the differentiation of LSC, including LI, decreases chromatin accessibility with differentiation and increasing expression of MC-1, CD34, CD38 and BCR-ABL1, thereby resensitizing them to imatinib.

Conclusion: We investigated the biological aspects related to LSC heterogeneity in CML patients and demonstrated the ability of specific small molecule CBP/β-catenin antagonists to safely eliminate deeply quiescent therapy resistant CSC. These observations may represent an attractive generalizable therapeutic strategy that could help develop better protocols to eradicate the quiescent LSC population.

背景和目的:疾病复发和治疗耐药性仍然是癌症治疗的严重障碍。白血病干细胞(LSC)具有耐药性,是复发的原因。深度静止状态似乎使癌症干细胞(CSC)能够获得对疾病进展和治疗耐药性至关重要的新的体细胞突变。正常造血干细胞(HSC)和LSC都有许多共同的特征,从而使LSC的安全消除变得复杂。最近的一项研究表明,长寿的正常卵母细胞不存在线粒体复合体I(MC-1),以发育调节的方式表达,从而减轻其对ROS的脆弱性。静止CSC依赖线粒体FAO,不表达复合物I,从而避免产生破坏性ROS,类似于长寿命的正常人类干细胞。更深入地了解治疗耐药性的生物学对于制定最佳策略以获得完全的白血病治疗至关重要。方法:在这里,使用原发性慢性粒细胞白血病(CML)患者样本的scRNA测序和ATAC-seq,结合生物信息学分析,我们进一步检查了先前表征的体外伊马替尼选择的CD34-CD38-CML LSC群体的异质性。我们利用一系列功能分析,包括单细胞代谢组学和海马分析,来验证最深的静止期白血病启动子(LI)亚群的存在。结果:目前的研究揭示了慢性粒细胞白血病患者治疗耐药LSC的异质性及其存在两种功能不同的状态。最深度静止的LI抑制MC-1的表达,但其代谢需求高度依赖于脂肪酸氧化(FAO),ATAC-seq在该群体中显示出染色质可及性增加,所有这些都与极其原始的静止干性转录特征一致。重要的是,特异性CREB结合蛋白(CBP)/β-连环蛋白拮抗剂ICG-001启动LSC(包括LI)的分化,随着分化降低染色质的可及性,并增加MC-1、CD34、CD38和BCR-ABL1的表达,从而使它们对伊马替尼重新增敏。结论:我们研究了CML患者LSC异质性的生物学方面,并证明了特异性小分子CBP/β-catenin拮抗剂能够安全地消除深度静止治疗耐药的CSC。这些观察结果可能代表了一种有吸引力的可推广治疗策略,有助于制定更好的方案来根除静止期LSC人群。
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引用次数: 0
Hsa_Circ_0000021 Sponges miR-3940-3p/KPNA2 Expression to Promote Cervical Cancer Progression. Hsa_Circ_0000021海绵miR-3940-3p/KPNA2表达促进宫颈癌进展
IF 2.9 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467216666230217151946
Qingyuan Zeng, Kun Feng, Yang Yu, Yumei Lv

Background: Circular RNAs (circRNAs) have a vital role in the occurrence of numerous cancers. However, its function and pattern of expression in cervical cancer (CC) remain unclear. This research aims to investigate the hsa_circ_000002's regulatory mechanism in CC.

Methods: Hsa_circ_0000021, miR-3940-3p, and KPNA2 expression levels were estimated through qRT-PCR. Nuclear/cytoplasmic separation was conducted to find the subcellular location of hsa_circ_0000021. Western blot was done to estimate the levels of KPNA2 protein. CCK-8, BrdU, wound healing, transwell, and tumor xenograft assays were performed to study how hsa_circ_0000021/miR-3940-3P/KPNA2 function affect CC. Hsa_circ_0000021's targeting relationships with miR-3940-3p and KPNA2 were ascertained through RIP and luciferase experiments.

Results: Hsa_circ_0000021 and KPNA2 were overexpressed and inversely associated with the levels of miR-3940-3p in CC. Knocking down either hsa_circ_0000021 or KPNA2 repressed the growth of CC tumors as well as the proliferation, invasion, and migration of CC cells. Silencing miR-3940-3p promoted the malignant proliferation of CC cells. Regarding its mechanism, hsa_circ_0000021 affected the malignant CC cell proliferation via the sponging of miR-3940-3p, which targeted KPNA2.

Conclusion: Hsa_circ_0000021 regulates the miR-3940-3p/KPNA2 axis to promote CC occurrence. This potentially is a novel target for CC treatment.

背景:环状rna (circRNAs)在许多癌症的发生中起着至关重要的作用。然而,其在宫颈癌(CC)中的功能和表达模式尚不清楚。本研究旨在探讨hsa_circ_000002在cc中的调控机制。方法:通过qRT-PCR检测Hsa_circ_0000021、miR-3940-3p和KPNA2的表达水平。通过核/细胞质分离确定hsa_circ_0000021的亚细胞位置。Western blot检测KPNA2蛋白表达水平。通过CCK-8、BrdU、伤口愈合、transwell和肿瘤异种移植检测来研究hsa_circ_0000021/miR-3940-3P/KPNA2功能如何影响CC,通过RIP和荧光素酶实验确定hsa_circ_0000021与miR-3940-3P和KPNA2的靶向关系。结果:Hsa_circ_0000021和KPNA2在CC中过表达并与miR-3940-3p水平呈负相关,敲低Hsa_circ_0000021或KPNA2均可抑制CC肿瘤的生长以及CC细胞的增殖、侵袭和迁移。沉默miR-3940-3p可促进CC细胞的恶性增殖。hsa_circ_0000021的作用机制是通过海绵作用靶向KPNA2的miR-3940-3p影响恶性CC细胞增殖。结论:Hsa_circ_0000021调控miR-3940-3p/KPNA2轴促进CC的发生。这可能是CC治疗的新靶点。
{"title":"Hsa_Circ_0000021 Sponges miR-3940-3p/KPNA2 Expression to Promote Cervical Cancer Progression.","authors":"Qingyuan Zeng, Kun Feng, Yang Yu, Yumei Lv","doi":"10.2174/1874467216666230217151946","DOIUrl":"10.2174/1874467216666230217151946","url":null,"abstract":"<p><strong>Background: </strong>Circular RNAs (circRNAs) have a vital role in the occurrence of numerous cancers. However, its function and pattern of expression in cervical cancer (CC) remain unclear. This research aims to investigate the hsa_circ_000002's regulatory mechanism in CC.</p><p><strong>Methods: </strong>Hsa_circ_0000021, miR-3940-3p, and KPNA2 expression levels were estimated through qRT-PCR. Nuclear/cytoplasmic separation was conducted to find the subcellular location of hsa_circ_0000021. Western blot was done to estimate the levels of KPNA2 protein. CCK-8, BrdU, wound healing, transwell, and tumor xenograft assays were performed to study how hsa_circ_0000021/miR-3940-3P/KPNA2 function affect CC. Hsa_circ_0000021's targeting relationships with miR-3940-3p and KPNA2 were ascertained through RIP and luciferase experiments.</p><p><strong>Results: </strong>Hsa_circ_0000021 and KPNA2 were overexpressed and inversely associated with the levels of miR-3940-3p in CC. Knocking down either hsa_circ_0000021 or KPNA2 repressed the growth of CC tumors as well as the proliferation, invasion, and migration of CC cells. Silencing miR-3940-3p promoted the malignant proliferation of CC cells. Regarding its mechanism, hsa_circ_0000021 affected the malignant CC cell proliferation via the sponging of miR-3940-3p, which targeted KPNA2.</p><p><strong>Conclusion: </strong>Hsa_circ_0000021 regulates the miR-3940-3p/KPNA2 axis to promote CC occurrence. This potentially is a novel target for CC treatment.</p>","PeriodicalId":10865,"journal":{"name":"Current molecular pharmacology","volume":" ","pages":"e170223213775"},"PeriodicalIF":2.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10739386","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Targeting Mutant-p53 for Cancer Treatment: Are We There Yet? 靶向突变p53用于癌症治疗:我们做到了吗?
IF 2.9 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.2174/1874467217666230914090621
Dhi Vya Lim, Wei Hwei Woo, Jing Xuan Lim, Xin Yee Loh, Hui Ting Soh, Seng Yung Adrian Lim, Zheng Yang Lee, Hui Yin Yow, Sharina Binti Hamzah, Renukha Sellappans, Jhi Biau Foo

Background: Mutations in the TP53 gene are the most common among genetic alterations in human cancers, resulting in the formation of mutant p53 protein (mutp53). Mutp53 promotes proliferation, migration, invasion, and metastasis in cancer cells. Not only does the initiation of oncogenesis ensue due to mutp53, but resistance towards chemotherapy and radiotherapy in cancer cells also occurs. This review aims to summarise and discuss the oncogenesis of mutant p53 in cancer cells and introduce the various mutant p53 inhibitors currently being evaluated at the pre-clinical and clinical stages. Compounds that induce the wild-type conformation on the targeted p53 missense mutation, restore or enhance the DNA binding of mutant p53, and inhibit cancer cells' growth are highlighted. In addition, the progression and development of the mutant p53 inhibitors in clinical trials are updated.

Conclusion: The progress of developing a cancer treatment that may successfully and efficiently target mutant p53 is on the verge of development. Mutant p53 proteins not only initiate oncogenesis but also cause resistance in cancer cells to certain chemo or radiotherapies, further endorse cancer cell survival and promote migration as well as metastasis of cancerous cells. With this regard, many mutant p53 inhibitors have been developed, some of which are currently being evaluated at the pre-clinical level and have been identified and discussed. To date, APR-246 is the most prominent one that has progressed to the Phase III clinical trial.

背景:TP53基因突变是人类癌症中最常见的基因改变,导致突变型p53蛋白(mutp53)的形成。Mutp53促进癌细胞的增殖、迁移、侵袭和转移。突变p53不仅会引发肿瘤发生,而且癌细胞对化疗和放疗也会产生耐药性。本文旨在总结和讨论突变型p53在癌细胞中的致癌作用,并介绍目前正在临床前和临床阶段评估的各种突变型p53抑制剂。重点介绍了诱导靶向p53错义突变的野生型构象,恢复或增强突变p53的DNA结合,抑制癌细胞生长的化合物。此外,突变型p53抑制剂在临床试验中的进展和发展也得到了更新。结论:成功有效地靶向突变型p53的癌症治疗方法即将取得进展。突变的p53蛋白不仅启动肿瘤发生,而且引起癌细胞对某些化疗或放疗的抵抗,进一步支持癌细胞的生存,促进癌细胞的迁移和转移。在这方面,已经开发了许多突变型p53抑制剂,其中一些目前正在临床前水平进行评估,并已被确定和讨论。到目前为止,APR-246是进入III期临床试验的最突出的一个。
{"title":"Targeting Mutant-p53 for Cancer Treatment: Are We There Yet?","authors":"Dhi Vya Lim, Wei Hwei Woo, Jing Xuan Lim, Xin Yee Loh, Hui Ting Soh, Seng Yung Adrian Lim, Zheng Yang Lee, Hui Yin Yow, Sharina Binti Hamzah, Renukha Sellappans, Jhi Biau Foo","doi":"10.2174/1874467217666230914090621","DOIUrl":"10.2174/1874467217666230914090621","url":null,"abstract":"<p><strong>Background: </strong>Mutations in the TP53 gene are the most common among genetic alterations in human cancers, resulting in the formation of mutant p53 protein (mutp53). Mutp53 promotes proliferation, migration, invasion, and metastasis in cancer cells. Not only does the initiation of oncogenesis ensue due to mutp53, but resistance towards chemotherapy and radiotherapy in cancer cells also occurs. This review aims to summarise and discuss the oncogenesis of mutant p53 in cancer cells and introduce the various mutant p53 inhibitors currently being evaluated at the pre-clinical and clinical stages. Compounds that induce the wild-type conformation on the targeted p53 missense mutation, restore or enhance the DNA binding of mutant p53, and inhibit cancer cells' growth are highlighted. In addition, the progression and development of the mutant p53 inhibitors in clinical trials are updated.</p><p><strong>Conclusion: </strong>The progress of developing a cancer treatment that may successfully and efficiently target mutant p53 is on the verge of development. Mutant p53 proteins not only initiate oncogenesis but also cause resistance in cancer cells to certain chemo or radiotherapies, further endorse cancer cell survival and promote migration as well as metastasis of cancerous cells. With this regard, many mutant p53 inhibitors have been developed, some of which are currently being evaluated at the pre-clinical level and have been identified and discussed. To date, APR-246 is the most prominent one that has progressed to the Phase III clinical trial.</p>","PeriodicalId":10865,"journal":{"name":"Current molecular pharmacology","volume":" ","pages":"e140923221042"},"PeriodicalIF":2.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10247095","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Current molecular pharmacology
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