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Detection and Sorting of Extracellular Vesicles and Viruses Using nanoFACS 利用纳米facs检测和分选细胞外囊泡和病毒
Q1 Health Professions Pub Date : 2020-12-17 DOI: 10.1002/cpcy.81
Aizea Morales-Kastresana, Joshua A. Welsh, Jennifer C. Jones

Extracellular vesicles (EVs) are sub-micron-sized membranous spheres secreted by cells. EVs play a functional role as intercellular communicators and are associated with a number of diseases. Research into EVs is an area of growing interest due their many potential uses as therapeutic agents, as diagnostic and theranostic biomarkers, and as regulators of cellular biology. Flow cytometry is a popular method for enumerating and phenotyping EVs, even though the majority of EVs are below the detection sensitivity of most commercially available flow cytometers. Here, we present optimized protocols for EV labeling that increase the signal-to-noise ratio of EVs by removing residual antibody. Protocols for alignment of high-resolution jet-in-air flow cytometers are also provided. Published 2020. U.S. Government.

Basic Protocol 1: Bulk EV staining with CFSE protein binding dye

Basic Protocol 2: Antigen-specific staining of EV markers with fluorochrome-conjugated antibodies

Basic Protocol 3: Astrios EQ instrument setup and sample acquisition

Basic Protocol 4: Counting particles and EVs on Astrios EQ with spike-in reference beads

细胞外囊泡(EVs)是细胞分泌的亚微米大小的膜状球体。ev作为细胞间通讯媒介发挥功能作用,并与许多疾病有关。电动汽车的研究是一个越来越受关注的领域,因为它们有许多潜在的用途,如治疗剂、诊断和治疗生物标志物以及细胞生物学的调节剂。流式细胞术是一种流行的枚举和分型ev的方法,尽管大多数ev低于大多数市售流式细胞仪的检测灵敏度。在这里,我们提出了优化的EV标记方案,通过去除残留抗体来提高EV的信噪比。还提供了高分辨率空气射流流式细胞仪的校准方案。2020年出版。美国政府。基本方案1:用CFSE蛋白结合染料进行大量EV染色基本方案2:用荧光染料偶联抗体进行EV标记的抗原特异性染色基本方案3:astros EQ仪器设置和样品获取基本方案4:用参考珠在astros EQ上计数颗粒和EV
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引用次数: 6
Live Imaging of the Lung 肺的实时成像
Q1 Health Professions Pub Date : 2020-11-23 DOI: 10.1002/cpcy.80
Tomasz Brzoska, Tomasz W. Kaminski, Margaret F. Bennewitz, Prithu Sundd

Live imaging is critical to determining the dynamics and spatial interactions of cells within the tissue environment. In the lung, this has proven to be difficult due to the motion brought about by ventilation and cardiac contractions. A previous version of this Current Protocols in Cytometry article reported protocols for imaging ex vivo live lung slices and the intact mouse lung. Here, we update those protocols by adding new methodologies, new approaches for quantitative image analysis, and new areas of potential application. © 2020 Wiley Periodicals LLC.

Basic Protocol 1: Live imaging of lung slices

Support Protocol 1: Staining lung sections with fluorescent antibodies

Basic Protocol 2: Live imaging in the mouse lung

Support Protocol 2: Intratracheal instillations

Support Protocol 3: Intravascular instillations

Support Protocol 4: Monitoring vital signs of the mouse during live lung imaging

Support Protocol 5: Antibodies

Support Protocol 6: Fluorescent reporter mice

Basic Protocol 3: Quantification of neutrophil-platelet aggregation in pulmonary vasculature

Basic Protocol 4: Quantification of platelet-dependent pulmonary thrombosis

Basic Protocol 5: Quantification of pulmonary vascular permeability

实时成像对于确定组织环境中细胞的动态和空间相互作用至关重要。在肺中,由于通气和心脏收缩带来的运动,这已被证明是困难的。这篇细胞术文章的前一个版本报道了体外活肺切片和完整小鼠肺的成像方案。在这里,我们通过添加新的方法、定量图像分析的新方法和潜在应用的新领域来更新这些协议。©2020 Wiley期刊有限公司基本方案1:肺切片的实时成像支持方案1:用荧光抗体染色肺切片基本方案2:小鼠肺的实时成像支持方案2:气管内滴注支持方案3:血管内滴注支持方案4:在活体肺成像期间监测小鼠的生命体征支持方案5:抗体支持方案6:荧光报告小鼠基本方案3:肺血管中中性粒细胞-血小板聚集的定量基本方案4:血小板依赖性肺血栓的定量基本方案5:肺血管通透性的定量
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引用次数: 2
Issue Information 问题信息
Q1 Health Professions Pub Date : 2020-09-01 DOI: 10.1002/cpcy.60
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引用次数: 0
Small Particle Fluorescence and Light Scatter Calibration Using FCMPASS Software. 使用 FCMPASS 软件进行小颗粒荧光和光散射校准。
Q1 Health Professions Pub Date : 2020-09-01 DOI: 10.1002/cpcy.79
Joshua A Welsh, Jennifer C Jones

Use of flow cytometry to analyze small particles has been implemented for several decades. More recently, small particle analysis has become increasingly utilized owing to the increased sensitivity of conventional and commercially available flow cytometers along with growing interest in small particles such as extracellular vesicles (EVs). Despite an increase in small particle flow cytometry utilization, a lack of standardization in data reporting has resulted in a growing body of literature regarding EVs that cannot be easily interpreted, validated, or reproduced. Methods for fluorescence and light scatter standardization are well established, and the reagents to perform these analyses are commercially available. Here, we describe FCMPASS , a software package for performing fluorescence and light scatter calibration of small particles while generating standard reports conforming to the MIFlowCyt-EV standard reporting framework. This article covers the workflow of implementing calibration using FCMPASS as follows: acquisition of fluorescence and light scatter calibration materials, cataloguing the reference materials for use in the software, creating cytometer databases and datasets to associate calibration data and fcs files, importing fcs files for calibration, inputting fluorescence calibration parameters, inputting light scatter calibration parameters, and applying the calibration to fcs files. Published 2020. U.S. Government. Basic Protocol 1: Acquisition and gating of light scatter calibration materials Basic Protocol 2: Acquisition and gating of fluorescence calibration materials Alternate Protocol: Cross-calibration of fluorescence reference materials Basic Protocol 3: Cataloguing light scatter calibration materials Basic Protocol 4: Cataloguing fluorescence calibration materials Basic Protocol 5: Creating cytometer databases and datasets Basic Protocol 6: Importing fcs files Basic Protocol 7: Fluorescence calibration Basic Protocol 8: Light scatter calibration Basic Protocol 9: Performing and reporting fcs file calibration.

使用流式细胞仪分析小颗粒已有几十年的历史。最近,由于传统和市售流式细胞仪的灵敏度提高,加上人们对细胞外囊泡 (EV) 等小颗粒的兴趣与日俱增,小颗粒分析的应用越来越广泛。尽管小颗粒流式细胞仪的应用越来越广泛,但由于数据报告缺乏标准化,导致有关 EVs 的文献越来越多,而这些文献却不容易解释、验证或复制。荧光和光散射标准化的方法已经非常成熟,进行这些分析的试剂也可以在市场上买到。在此,我们介绍 FCMPASS 软件包,它可对小颗粒进行荧光和光散射校准,同时生成符合 MIFlowCyt-EV 标准报告框架的标准报告。本文介绍了使用 FCMPASS 实施校准的工作流程如下:获取荧光和光散射校准材料、为软件中使用的参考材料编目、创建细胞仪数据库和数据集以关联校准数据和 fcs 文件、导入 fcs 文件进行校准、输入荧光校准参数、输入光散射校准参数以及将校准应用于 fcs 文件。2020 年出版。美国政府。基本规程 1:光散射校准材料的获取和选通 基本规程 2:荧光校准材料的获取和选通 替代规程:基本规程 3:光散射校准材料编目 基本规程 4:荧光校准材料编目 基本规程 5:创建细胞仪数据库和数据集 基本规程 6:导入 fcs 文件 基本规程 7:荧光校准 基本规程 8:光散射校准 基本规程 9:执行和报告 fcs 文件校准。
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引用次数: 0
Optimized Stochastic Optical Reconstruction Microscopy for Imaging Chromatin Structure in Pathological Tissue 优化随机光学重建显微镜成像病理组织染色质结构
Q1 Health Professions Pub Date : 2020-08-06 DOI: 10.1002/cpcy.78
Jianquan Xu, Hongqiang Ma, Yang Liu
Direct visualization of higher‐order chromatin structure at the molecular scale is of great importance for understanding the impact of chromatin organization on gene expression in many biological processes. Understanding the changes in chromatin structure during pathological processes requires the use of in vivo models and clinical samples, and formalin‐fixed, paraffin‐embedded (FFPE) tissue is the most widespread form of preservation. Here we describe the details of PathSTORM, an optimized stochastic optical reconstruction microscopy (STORM) protocol for high‐quality super‐resolution imaging of densely packed higher‐order chromatin organization in pathological tissue. We discuss detailed methods for fluorescence staining of DNA and histone proteins, as well as the key technical factors for obtaining high‐quality STORM images in pathological tissue samples. © 2020 Wiley Periodicals LLC
在分子尺度上直接可视化高阶染色质结构对于理解染色质组织在许多生物过程中对基因表达的影响具有重要意义。了解病理过程中染色质结构的变化需要使用体内模型和临床样本,而福尔马林固定石蜡包埋(FFPE)组织是最广泛的保存形式。在这里,我们描述了PathSTORM的细节,这是一种优化的随机光学重建显微镜(STORM)方案,用于病理组织中密集排列的高阶染色质组织的高质量超分辨率成像。我们详细讨论了DNA和组蛋白荧光染色的方法,以及在病理组织样本中获得高质量STORM图像的关键技术因素。©2020 Wiley期刊llc基本协议1:病理组织中染色质的荧光染色基本协议2:STORM数据处理支持协议1:漂移校正支持协议2:图像重建支持协议3:苏木精;伊红(H&E)染色
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引用次数: 2
Acute Myeloid Leukemia Minimal Residual Disease Detection: The Difference from Normal Approach. 急性髓系白血病微小残留病检测:与正常方法的区别。
Q1 Health Professions Pub Date : 2020-06-01 DOI: 10.1002/cpcy.73
Brent L Wood

The identification of residual leukemia following therapy, termed minimal or measurable residual disease (MRD), has emerged as one of the most important prognostic factors for patients with acute leukemia, including acute myeloid leukemia (AML). Flow cytometry is a preferred method for MRD detection due to its general applicability and the rapid results that it makes available. In this article, the basic protocol outlines a simple and efficient method for the labeling of hematopoietic cells from bone marrow or peripheral blood with a panel of monoclonal antibodies designed both to highlight patterns of normal maturation and allow identification of neoplastic hematopoietic progenitor populations with a high degree of sensitivity and specificity. The method was developed in a clinical laboratory setting for the diagnosis of myeloid stem cell disorders and neoplasms, and has been extensively validated both technically and clinically for the detection of MRD in AML. © 2020 The Authors. Basic Protocol: Staining and flow cytometry for AML minimal residual disease detection Support Protocol: Analysis and interpretation of data for AML minimal residual disease detection.

治疗后残留白血病的识别,称为微小或可测量的残留病(MRD),已成为急性白血病(包括急性髓系白血病(AML))患者最重要的预后因素之一。流式细胞术是mri检测的首选方法,因为它具有普遍的适用性和快速的结果。在本文中,基本方案概述了一种简单而有效的方法,用于标记来自骨髓或外周血的造血细胞,使用一组单克隆抗体来突出正常成熟的模式,并允许以高度的敏感性和特异性识别肿瘤造血祖细胞群。该方法是在临床实验室环境中开发的,用于髓系干细胞疾病和肿瘤的诊断,并已在技术和临床上广泛验证了AML中MRD的检测。©2020作者。基本方案:AML微小残留疾病检测的染色和流式细胞术支持方案:AML微小残留疾病检测数据的分析和解释。
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引用次数: 40
Flow Cytometric Quantification of Granulocytic Alkaline Phosphatase Activity in Unlysed Whole Blood. 流式细胞术定量测定未溶全血粒细胞碱性磷酸酶活性。
Q1 Health Professions Pub Date : 2020-06-01 DOI: 10.1002/cpcy.76
Jorge Bardina, Laura G Rico, Michael D Ward, Jolene A Bradford, Jordi Juncà, Jordi Petriz

Translational research has improved the diagnosis and follow-up of hematological diseases and malignancies. However, some classical diagnostics used for research and clinical practice that have remain practically unchanged for decades may be better addressed through advances in flow cytometry technology, whereby more precise measurements may be implemented in a straightforward manner. The current method for semiquantitative analysis of granulocytic alkaline phosphatase (GAP) activity is still based on observer-dependent color-intensity classification. Here, we describe a novel strategy for flow cytometric quantification of GAP activity in which staining and analytical flow cytometry facilitate the detection and quantification of subpopulations of leukocytes with different GAP activities. Our experiments demonstrate the potential of flow cytometry as a simple and highly sensitive approach for measuring GAP activity in unlysed whole blood. Notably, a comparison of flow cytometry and enzyme cytochemistry techniques showed that enzyme activity scores were not similar, indicating that results needs to be interpreted with caution, given that the enzyme-substrate binding affinities may differ, as well as the subjective evaluation of the intensity of the precipitated dye. © 2020 Wiley Periodicals LLC. Basic Protocol: Protocol preparation, sample acquisition, and gating strategy for flow cytometric identification of alkaline phosphatase activity in granulocytes from whole blood samples Support Protocol 1: Sample preparation for granulocyte alkaline phosphatase determination by flow cytometry using no-lyse no-wash methods Support Protocol 2: Data analysis and formula to calculate the GAP score.

转化研究改善了血液病和恶性肿瘤的诊断和随访。然而,一些用于研究和临床实践的经典诊断方法几十年来几乎没有改变,可以通过流式细胞术技术的进步来更好地解决,流式细胞术技术可以以一种直接的方式实现更精确的测量。目前对粒细胞碱性磷酸酶(GAP)活性的半定量分析方法仍然是基于观察者依赖的颜色强度分类。在这里,我们描述了一种新的流式细胞术定量GAP活性的策略,其中染色和分析流式细胞术有助于检测和定量具有不同GAP活性的白细胞亚群。我们的实验证明了流式细胞术作为一种简单而高灵敏度的方法测量未裂解全血中GAP活性的潜力。值得注意的是,流式细胞术和酶细胞化学技术的比较显示,酶活性评分并不相似,这表明,考虑到酶与底物的结合亲和力可能不同,以及对沉淀染料强度的主观评价,需要谨慎解释结果。©2020 Wiley期刊有限责任公司基本方案:全血样本中粒细胞碱性磷酸酶活性的流式细胞术鉴定方案制备、样品采集和门控策略支持方案1:使用no-lyse - no-wash方法流式细胞术测定粒细胞碱性磷酸酶的样品制备支持方案2:数据分析和计算GAP评分的公式。
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引用次数: 1
Estimation of Microbial Viability Using Flow Cytometry. 用流式细胞术估计微生物活力。
Q1 Health Professions Pub Date : 2020-06-01 DOI: 10.1002/cpcy.72
Hazel Davey, Stéphane Guyot

For microorganisms in particular, viability is a term that is difficult to define and a state consequently difficult to measure. The traditional (and gold standard) usage equates viability and culturability (i.e., the ability to multiply) but the process of determining culturability is often too slow. Flow cytometry provides the opportunity to make rapid and quantitative measurements of dye uptake in large numbers of cells and we can therefore exploit the flow cytometric approach to evaluate so-called viability stains and to develop protocols for more routine assessments of microbial viability. This article provides a commentary and several protocols have been included to ensure that users have a firm basis for attempting these reasonably difficult assays on traditional flow cytometer instruments. What is clear is that each assay must be carefully validated with the particular microorganism of interest before being applied in any research, clinical, or service form. © 2020 The Authors.

特别是对微生物来说,生存能力是一个难以定义的术语,因此也是一种难以测量的状态。传统的(和黄金标准)用法将生存能力和可培养性(即繁殖能力)等同起来,但确定可培养性的过程通常太慢。流式细胞术提供了在大量细胞中对染料摄取进行快速定量测量的机会,因此我们可以利用流式细胞术方法来评估所谓的活力染色,并制定更常规的微生物活力评估方案。本文提供了一个评论和几个协议已包括,以确保用户有一个坚实的基础,尝试这些合理的困难的分析在传统的流式细胞仪仪器。很清楚的是,在应用于任何研究、临床或服务形式之前,每个测定都必须与感兴趣的特定微生物仔细验证。©2020作者。
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引用次数: 43
Acquisition of High-Quality Spectral Flow Cytometry Data. 获得高质量的流式细胞术数据。
Q1 Health Professions Pub Date : 2020-06-01 DOI: 10.1002/cpcy.74
Amy Fox, Taru S Dutt, Burton Karger, Andrés Obregón-Henao, G Brooke Anderson, Marcela Henao-Tamayo

Flow cytometry allows the visualization of physical, functional, and/or biological properties of cells including antigens, cytokines, size, and complexity. With increasingly large flow cytometry panels able to analyze up to 50 parameters, there is a need to standardize flow cytometry protocols to achieve high-quality data that can be input into analysis algorithms. Without this clean data, algorithms may incorrectly categorize the cell populations present in the samples. In this protocol, we outline a comprehensive methodology to prepare samples for polychromatic flow cytometry. The use of multiple washing steps and rigorous controls creates high-quality data with good separation between cell populations. Experimental data acquired using this protocol can be analyzed via computational algorithms that perform end-to-end analysis. © 2020 by John Wiley & Sons, Inc. Basic Protocol 1: Preparation of single-cell suspension for flow cytometry Support Protocol 1: Lung preparation Support Protocol 2: Counting cells on a flow cytometer Basic Protocol 2: Surface and intracellular flow cytometry staining Support Protocol 3: Single-color bead controls.

流式细胞术可以可视化细胞的物理、功能和/或生物学特性,包括抗原、细胞因子、大小和复杂性。随着越来越大的流式细胞仪面板能够分析多达50个参数,需要标准化流式细胞仪方案,以获得可输入分析算法的高质量数据。如果没有这些干净的数据,算法可能会错误地对样本中存在的细胞群进行分类。在本协议中,我们概述了一种综合的方法来制备用于多色流式细胞术的样品。使用多个洗涤步骤和严格的控制创建高质量的数据与细胞群之间的良好分离。使用该协议获得的实验数据可以通过执行端到端分析的计算算法进行分析。©2020 by John Wiley & Sons, Inc。基本方案1:流式细胞术单细胞悬液的制备支持方案1:肺准备支持方案2:流式细胞仪上细胞计数基本方案2:表面和细胞内流式细胞术染色支持方案3:单色珠对照。
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引用次数: 6
Issue Information 问题信息
Q1 Health Professions Pub Date : 2020-06-01 DOI: 10.1002/cpcy.59
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引用次数: 0
期刊
Current Protocols in Cytometry
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