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Optimizations of Placenta Extracellular Matrix-Loaded Silk Fibroin/Alginate 3D-Printed Scaffolds Structurally and Functionally for Bone Tissue Engineering.
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-09 eCollection Date: 2025-01-01 DOI: 10.1002/elsc.202400085
Zahra Bashiri, Zahra Khosrowpour, Ali Moghaddaszadeh, Davod Jafari, Sanaz Alizadeh, Hajar Nasiri, Houman Parsaei, Zahra Keshtkaran, Meghdad Abdollahpour-Alitappeh, Farshad Bargrizaneh, Behzad Rezaei, Sara Simorgh, Mazaher Gholipourmalekabadi

Recent interest has been focused on extracellular matrix (ECM)-based scaffolds totreat critical-sized bone injuries. In this study, urea was used to decellularize and solubilize human placenta tissue. Then, different concentrations of ECM were composited with 8% alginate (Alg) and 12% silk fibroin (SF) for printing in order to produce a natural 3D construct that resembled bone tissue. The physical and biological features of the printed structures were evaluated entirely in vitro. Finally, a rat model was employed to examine the optimal 3D printed scaffold (5% ECM) as a bone transplant for the healing of cranial bone lesions. The present investigation demonstrated that decellularizing placental tissue fragments led to efficient removal of cell debris. In addition, a remarkable improvement in the printed scaffolds' mechanical and biological properties was observed by increasing the ECM concentration. The histology studies and real-time PCR results demonstrated the acceleration of bone regeneration in the bone lesions treated with 5%ECM-SF/Alg at 4 and 8 weeks after implantation. Overall, these results proved that the placental ECM-printed scaffolds could potentially construct biomimetic grafts to reconstruct significant bone defects and now promise to proceed with clinical studies.

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引用次数: 0
Investigating Ultrafiltration Membranes and Operation Modes for Improved Lentiviral Vector Processing.
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-03 eCollection Date: 2025-01-01 DOI: 10.1002/elsc.202400057
Jennifer J Labisch, Maria Evangelopoulou, Tobias Schleuß, Andreas Pickl

The demand for lentiviral vectors (LVs) as tools for ex vivo gene therapies is ever-increasing. Despite their promising applications, challenges in LV production remain largely due to the fragile envelope, which challenges the maintenance of vector stability. Thus, downstream processing optimization to enhance efficiency, yield, and product quality is necessary. This study investigated the influence of membrane types and filtration devices during ultrafiltration (UF). Nine different membrane materials consisting of polyethersulfone (PES), regenerated cellulose, or Hydrosart, with distinct molecular weight cutoffs, were evaluated in stirred cells, centrifugal ultrafilters, and crossflow cassettes. The evaluation was based on the ability to retain infectious LV particles and remove impurities. The analysis revealed that a reinforced 100 kDa PES and a 300 kDa Hydrosart membrane had the best overall ability to concentrate infectious LVs and remove DNA, especially when operated in a stirred cell. Challenges were seen in the nonoptimized crossflow cassette process, where infectious LV recovery was generally lower compared to other devices. We demonstrated that membrane material and filtration device have a direct impact on the efficiency of LV UF.

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引用次数: 0
A Consecutive Genome Engineering Method Reveals a New Phenotype and Regulation of Glucose and Glycerol Utilization in Clostridium Pasteurianum.
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-03 eCollection Date: 2025-01-01 DOI: 10.1002/elsc.202400026
Tom Nguyen, Luca W G Meleski, Minu P Belavatta, Sivasubramanian Gurumoorthi, Chijian Zhang, Anna-Lena Heins, An-Ping Zeng

Clostridium pasteurianum is a microorganism for production of 1,3-propanediol (1,3-PDO) and butanol, but suffers from lacking genetic tools for metabolic engineering to improve product titers. Furthermore, previous studies of C. pasteurianum have mainly focused on single genomic modification. The aim of this work is the development and application of a method for modification of multiple gene targets in the genome of C. pasteurianum. To this end, a new approach for consecutive genome engineering is presented for the first time using a method based on endogenous CRISPR-Cas machineries. A total of three genome modifications were consecutively introduced in the same mutant and the effect of combined changes on the genome was observed by 39% decreased specific glycerol consumption rate and 29% increased 1,3-PDO yield in mixed substrate fermentations at laboratory scale in comparison to the wildtype strain. Additionally, examination of the phenotype of the generated mutant strain led to discovery of 2,3-butanediol (2,3-BDO) production of up to 0.48 g L-1, and this metabolite was not reported to be produced by C. pasteurianum before. The developed procedure expands the genetic toolkit for C. pasteurianum and provides researchers an additional method which contributes to improved genetic accessibility of this strain.

巴氏梭菌是一种生产 1,3-丙二醇(1,3-PDO)和丁醇的微生物,但缺乏用于代谢工程的基因工具来提高产品滴度。此外,以前对 C. pasteurianum 的研究主要集中在单基因组改造上。这项工作的目的是开发和应用一种方法来改造 C. pasteurianum 基因组中的多个基因靶标。为此,我们首次提出了一种基于内源性 CRISPR-Cas 机制的连续基因组工程新方法。在实验室规模的混合底物发酵中,与野生型菌株相比,基因组的组合变化产生的效果是比甘油消耗率降低了 39%,1,3-PDO 产量增加了 29%。此外,对所生成突变菌株表型的研究还发现,2,3-丁二醇(2,3-BDO)的产量高达 0.48 g L-1,而此前并没有关于巴氏杀菌杆菌产生这种代谢物的报道。所开发的程序扩展了巴氏菌的遗传工具包,并为研究人员提供了一种有助于提高该菌株遗传可及性的额外方法。
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引用次数: 0
Cover Picture: Engineering in Life Sciences 12'24
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-05 DOI: 10.1002/elsc.202470121
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引用次数: 0
Succinic Acid Production With Actinobacillus succinogenes -Influence of an Electric Potential on the Intercellular NADH/NAD+ Balance.
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-13 eCollection Date: 2025-01-01 DOI: 10.1002/elsc.202400053
Jan-Niklas Hengsbach, Marcel Cwienczek, Wolfgang Laudensack, Judith Stiefelmaier, Nils Tippkötter, Roland Ulber

Bioelectrochemical systems (BESs) offer a sustainable method for chemical production, including the enhanced production of succinic acid. By combining fermentation with BES, it could be possible to achieve sustainable succinic acid production and CO2 fixation using Actinobacillus succinogenes. In literature, the potential application of BES is commonly associated with increased succinate yields, as it is expected to enhance the availability of NADH, thereby influencing the intracellular nicotinamide adenine dinucleotide (NADH/NAD+) balance. However, it remains unclear whether BES can improve NADH regeneration and achieve higher NADH/NAD+ ratios across all growth phases of A. succinogenes. This study investigates the impact of an applied electrical potential on the intracellular NADH/NAD+ ratio during an electrochemical-assisted fermentation process. Using an adapted high-performance liquid chromatography method with a Supelcosil LC-18-T column, it was demonstrated that NADH availability in BES, particularly during the stationary growth phase, improved by up to 1.98-fold compared to the control. This enhancement in reducing power led to a succinate yield of 0.747 ± 0.01 g g-1, representing a 15.65% increase compared to a fermentation without electrochemical assistance. These findings support the expectation that the use of BES could enhance the competitiveness of bio-based succinate production.

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引用次数: 0
Cover Picture: Engineering in Life Sciences 11'24 封面图片:生命科学工程 11'24
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-04 DOI: 10.1002/elsc.202470111
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引用次数: 0
Raman-Enabled Predictions of Protein Content and Metabolites in Biopharmaceutical Saccharomyces cerevisiae Fermentations
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-16 DOI: 10.1002/elsc.202400045
Jeppe Hagedorn, Guilherme Ramos, Miguel Ressurreição, Ernst Broberg Hansen, Michael Sokolov, Carlos Casado Vázquez, Christos Panos

Raman spectroscopy, a robust and non-invasive analytical method, has demonstrated significant potential for monitoring biopharmaceutical production processes. Its ability to provide detailed information about molecular vibrations makes it ideal for the detection and quantification of therapeutic proteins and critical control parameters in complex biopharmaceutical mixtures. However, its application in Saccharomyces cerevisiae fermentations has been hindered by the inherent strong fluorescence background from the cells. This fluorescence interferes with Raman signals, compromising spectral data accuracy. In this study, we present an approach that mitigates this issue by deploying Raman spectroscopy on cell-free media samples, combined with advanced chemometric modeling. This method enables accurate prediction of protein concentration and key process parameters, fundamental for the control and optimization of biopharmaceutical fermentation processes. Utilizing variable importance in projection (VIP) further enhances model robustness, leading to lower relative root mean squared error of prediction (RMSEP) values across the six targets studied. Our findings highlight the potential of Raman spectroscopy for real-time, on-line monitoring and control of complex microbial fermentations, thereby significantly enhancing the efficiency and quality of S. cerevisiae-based biopharmaceutical production.

{"title":"Raman-Enabled Predictions of Protein Content and Metabolites in Biopharmaceutical Saccharomyces cerevisiae Fermentations","authors":"Jeppe Hagedorn,&nbsp;Guilherme Ramos,&nbsp;Miguel Ressurreição,&nbsp;Ernst Broberg Hansen,&nbsp;Michael Sokolov,&nbsp;Carlos Casado Vázquez,&nbsp;Christos Panos","doi":"10.1002/elsc.202400045","DOIUrl":"10.1002/elsc.202400045","url":null,"abstract":"<p>Raman spectroscopy, a robust and non-invasive analytical method, has demonstrated significant potential for monitoring biopharmaceutical production processes. Its ability to provide detailed information about molecular vibrations makes it ideal for the detection and quantification of therapeutic proteins and critical control parameters in complex biopharmaceutical mixtures. However, its application in <i>Saccharomyces cerevisiae</i> fermentations has been hindered by the inherent strong fluorescence background from the cells. This fluorescence interferes with Raman signals, compromising spectral data accuracy. In this study, we present an approach that mitigates this issue by deploying Raman spectroscopy on cell-free media samples, combined with advanced chemometric modeling. This method enables accurate prediction of protein concentration and key process parameters, fundamental for the control and optimization of biopharmaceutical fermentation processes. Utilizing variable importance in projection (VIP) further enhances model robustness, leading to lower relative root mean squared error of prediction (RMSEP) values across the six targets studied. Our findings highlight the potential of Raman spectroscopy for real-time, on-line monitoring and control of complex microbial fermentations, thereby significantly enhancing the efficiency and quality of <i>S. cerevisiae</i>-based biopharmaceutical production.</p>","PeriodicalId":11678,"journal":{"name":"Engineering in Life Sciences","volume":"24 12","pages":""},"PeriodicalIF":3.9,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11620617/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142794628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mechanical Microvibration Device Enhancing Immunohistochemistry Efficiency 提高免疫组化效率的机械微振动装置
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-13 DOI: 10.1002/elsc.202400062
Weifeng Zhang, Jirui Li, Fengshan Xie, Liting Zeng, Liangli Hong, Penghao Li, Xiaomiao Yan, Jingliang Xu, Meina Du, Jiongzhi Hong, Dingrong Yi, Jiahao Xie, Jiang Gu

Immunohistochemistry (IHC) is a widely used technique in diagnostic pathology and biomedical research, but there is still a need to shorten the operation process and reduce the cost of antibodies. This study aims to assess a novel IHC technique that incorporates mechanical microvibration (MMV) to expedite the process, reduce antibody consumption, and enhance staining quality. MMV was generated using coin vibration motors attached to glass slides mounted with consecutive tissue sections. Multiple antibodies targeting various antigens were used to stain cancerous and normal tissues, with and without microvibration. Various parameters were tested, including incubation durations, temperatures, and antibody dilutions. The novel method showed the potential to achieve comparable or superior outcomes in significantly less time, utilizing over 10 times less antibody than controls. MMV improved specific staining quality, yielding stronger, and better-defined positive reactions. This was validated through a multicenter double-blind assessment and quantitative image analysis. The possible mechanisms were also investigated. MMV shortens immunohistochemical staining duration, reduces antibody usage, and enhances staining specificity, likely by accelerating antibody movement and diffusion. These improvements translate to time and cost savings, offering clinical and financial value for diagnostic pathology and biomedical research.

免疫组化(IHC)是一种广泛应用于病理诊断和生物医学研究的技术,但仍需缩短操作流程并降低抗体成本。本研究旨在评估一种新型 IHC 技术,该技术结合了机械微振动(MMV)技术,可加快操作流程、减少抗体消耗并提高染色质量。MMV是使用硬币振动电机产生的,该电机连接到装有连续组织切片的玻璃载玻片上。针对不同抗原的多种抗体被用于对癌症和正常组织进行染色,包括使用和不使用微振动。测试了各种参数,包括孵育时间、温度和抗体稀释度。结果表明,这种新方法可以在更短的时间内取得相当或更好的效果,使用的抗体比对照组少 10 倍以上。MMV 提高了特异性染色质量,可产生更强、更清晰的阳性反应。多中心双盲评估和定量图像分析验证了这一点。此外,还对可能的机制进行了研究。MMV 可缩短免疫组化染色时间,减少抗体用量,提高染色特异性,这可能是通过加速抗体的移动和扩散实现的。这些改进节省了时间和成本,为病理诊断和生物医学研究提供了临床和经济价值。
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引用次数: 0
Cover Picture: Engineering in Life Sciences 10'24 封面图片:生命科学工程 10'24
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-09 DOI: 10.1002/elsc.202470101
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引用次数: 0
In situ Product Recovery of Microbially Synthesized Ethyl Acetate from the Exhaust Gas of a Bioreactor by Membrane Technology
IF 3.9 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-30 DOI: 10.1002/elsc.202400041
Andreas Hoffmann, Alexander Franz, Christian Löser, Thomas Hoyer, Marcus Weyd, Thomas Walther

Ethyl acetate is at present exclusively produced from fossil resources. Microbial synthesis of this ester from sugar-rich waste as an alternative is an aerobic process. Ethyl acetate is highly volatile and therefore stripped with the exhaust gas from the bioreactor which enables in situ product recovery. Previous research on microbial formation of ethyl acetate has focused on the kinetics of ester synthesis and in part on the ester stripping, while the separation of the ester from the exhaust gas has hardly been investigated. A mixed matrix membrane was developed consisting of Silikalite-1 embedded in polydimethylsiloxane which was installed in a radial–symmetrical membrane module. Evaluation of the separation of ethyl acetate was based on the analysis of the composition of the feed and retentate gas by mass spectrometry. The separation efficiency of the membrane was first tested with varied flows of artificial exhaust gas, containing defined amounts of ethyl acetate. A model for describing the separation process was parametrized by the measured data and used to design a real separation experiment. Ethyl acetate produced from delactosed whey permeate by Kluyveromyces marxianus DSM 5422 in a stirred bioreactor gassed with 0.5 vvm air was successfully separated from the exhaust gas by membranes; 93.6% of the stripped ester was separated. Liquid ethyl acetate was recovered by cooling the permeate gas to ‒78°C, whereby 99.75% of the condensed organic compounds were ethyl acetate. This study demonstrates for the first time that microbially produced and stripped ethyl acetate can be effectively separated from the exhaust gas of bioreactors by membrane technology to obtain the ester in high yield and purity.

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Engineering in Life Sciences
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