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Highlights from the Susan Lindquist School on Proteostasis—EMBO|FEBS Lecture Course, 16–19 September, 2025, Espoo, Finland 2025年9月16-19日,芬兰埃斯波,Susan Lindquist proteostis - embo b| FEBS讲座课程亮点。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2026-01-03 DOI: 10.1002/1873-3468.70261
Emile van Weert, Chiara Giacomelli, Ioanna Stefani, Maria Li Lopez-Bautista, Antonia-Viktoria Neumeier, Pubali Paul, Anushka Das, Chetan Hari, Ahmet Sadik Gulgec

The maintenance of protein homeostasis is a fundamental premise for the survival of all life. The synthesis, folding, localization, and degradation of thousands of proteins must be organized according to various conditions. To ensure such a stable and functional proteome, the proteostasis network evolved. Dedicated to this, the fourth School on Proteostasis, a co-funded EMBO|FEBS Lecture Course in memory of Susan Lindquist, took place in Espoo, Finland on 16–19 September 2025, with 59 early career researchers (PhD students or postdoctoral fellows), 18 leading scientists, and two editors attending and discussing the current state of the field. From basic principles to the latest therapeutic developments, this meeting provided a comprehensive overview of proteostasis. This report summarizes the lecture course and highlights selected presentations.

维持蛋白质的体内平衡是所有生命生存的基本前提。成千上万种蛋白质的合成、折叠、定位和降解必须根据不同的条件进行组织。为了确保这种稳定和功能的蛋白质组,蛋白质平衡网络进化。为此,在2025年9月16日至19日,在芬兰埃斯波举行了第四届Proteostasis学校,这是一个共同资助的EMBO b| FEBS讲座课程,以纪念Susan Lindquist,有59名早期职业研究人员(博士生或博士后),18名主要科学家和两名编辑参加并讨论了该领域的现状。从基本原理到最新的治疗进展,这次会议提供了一个全面的概述。本报告总结了讲座过程,并重点介绍了精选的演讲。
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引用次数: 0
Addressing the experiences of mothers in academia—a call for structural and cultural change 探讨母亲在学术界的经历——呼吁结构和文化变革。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2026-01-02 DOI: 10.1002/1873-3468.70262
Devanshi Agarwal, Sonya E. Neal

Parenthood has been linked to lower retention of women in academia, yet the specific challenges faced by mothers remain underexplored. We interviewed nine mothers across different career stages in the life sciences to qualitatively examine how motherhood intersects with academic milestones. Participants described challenges unique to academia, including dependence on supervisors, publication pressure, financial strain, and limited awareness of available institutional resources. They also shared strategies that supported their success, such as transparent communication with supervisors, designating student–parent coordinators, and creating peer communities for mothers in academia. By highlighting shared barriers and effective solutions, this work underscores the need for structural and cultural reforms to better support mothers in academia and retain talented scientists in STEM fields.

为人父母与女性在学术界的留任率较低有关,但母亲们面临的具体挑战仍未得到充分探讨。我们采访了九位在生命科学领域处于不同职业阶段的母亲,以定性地研究母性与学术里程碑之间的关系。与会者描述了学术界面临的独特挑战,包括对导师的依赖、出版压力、财政紧张以及对现有机构资源的有限认识。她们还分享了支持她们成功的策略,比如与导师进行透明的沟通,指定学生家长协调员,以及为学术界的母亲们创建同伴社区。通过强调共同的障碍和有效的解决方案,这项工作强调了进行结构和文化改革的必要性,以更好地支持学术界的母亲,并留住STEM领域的优秀科学家。
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引用次数: 0
Unraveling circadian rhythms-computational insights into molecular mechanisms. 解开昼夜节律——分子机制的计算见解。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2026-01-02 DOI: 10.1002/1873-3468.70264
Yashasvi Rao, Ashutosh Srivastava

Almost all organisms on earth undergo rhythmic physiological and behavioral changes over the course of day. These rhythms are fundamental in most organisms and are referred to as circadian rhythms. The molecular mechanisms regulating these changes have evolved significantly in different kingdoms of life and they engage in crosstalk with most cellular functions. These molecular mechanisms have been studied for a long time using different model organisms and carefully designed experiments. In the past two decades or so, with advances in high throughput technologies and access to ever increasing computational power, the molecular mechanisms regulating circadian rhythms are being explored at multiple spatial and temporal scales. In this review, we introduce diverse regulatory mechanisms of circadian rhythms. We then focus on the proteins involved in circadian regulation, their structures, complexes and dynamics. This is followed by a review of computational methods such as structural modeling, integrative modeling and molecular simulations as applied to understanding the clock proteins in different organisms and insights obtained from the same. Finally, we highlight the limitations and future prospects of these methods in understanding the circadian regulation.

地球上几乎所有的生物在一天中都会经历有节奏的生理和行为变化。这些节律是大多数生物体的基本节律,被称为昼夜节律。调节这些变化的分子机制在不同的生命王国中已经发生了显著的进化,它们与大多数细胞功能相互作用。这些分子机制已经用不同的模式生物和精心设计的实验进行了很长时间的研究。在过去的二十年左右,随着高通量技术的进步和计算能力的不断提高,调节昼夜节律的分子机制正在多个空间和时间尺度上进行探索。在这篇综述中,我们介绍了昼夜节律的多种调节机制。然后,我们将重点关注参与昼夜节律调节的蛋白质,它们的结构、复合物和动力学。接下来是对结构建模、综合建模和分子模拟等计算方法的回顾,这些方法用于理解不同生物体中的时钟蛋白,并从中获得见解。最后,我们强调了这些方法在理解昼夜节律调节方面的局限性和未来前景。
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引用次数: 0
Multiple ETS family transcription factors bind mutant p53 via distinct interaction regions. 多个ETS家族转录因子通过不同的相互作用区域结合突变p53。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-12-31 DOI: 10.1002/1873-3468.70260
Stephanie A Metcalf, Nicholas F Downing, Kaitlyn M Mills, Samuel C Metcalfe, Alexander E Kritzer, Lindsey D Mayo, Peter C Hollenhorst

ETS family transcription factors can mediate mutant p53 functions, but there has been no comprehensive analysis of p53 interaction across the ETS family. By comparing direct mutant p53 binding between 26 ETS proteins, we found that all bound mutant p53, but relative binding differed significantly. The ETS DNA binding domain provided a common interaction interface, but strong binding required an alternate interaction domain highlighted by a PXXPP motif found in five ETS proteins. Genome-wide mapping found that the ETS protein ERG mediated some mutant p53 DNA binding in prostate cancer cells. Lastly, ETS proteins that interact strongly with mutant p53 tended to be upregulated in p53 mutant ovarian cancer. These results identify multiple ETS family members that could mediate mutant p53 function in cancer. Impact statement The mechanisms behind gain-of-function mutant p53 remain unclear. Here we identify distinct domains and a novel motif that can mediate binding of mutant p53 to multiple different ETS family transcription factors.

ETS家族转录因子可以介导突变型p53功能,但尚未对ETS家族中p53相互作用进行全面分析。通过比较26种ETS蛋白之间p53突变体的直接结合,我们发现所有ETS蛋白都与p53突变体结合,但相对结合差异显著。ETS DNA结合域提供了一个共同的相互作用界面,但强结合需要一个由五个ETS蛋白中发现的PXXPP基序突出的替代相互作用域。全基因组图谱发现,ETS蛋白ERG介导前列腺癌细胞中一些突变p53 DNA结合。最后,与突变型p53强烈相互作用的ETS蛋白在p53突变型卵巢癌中趋于上调。这些结果确定了多个ETS家族成员可能介导p53突变在癌症中的功能。功能获得突变型p53背后的机制尚不清楚。在这里,我们发现了不同的结构域和一个新的基序,可以介导突变p53与多个不同的ETS家族转录因子的结合。
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引用次数: 0
Crosstalk between the ribosome quality control-associated E3 ubiquitin ligases LTN1 and RNF10. 核糖体质量控制相关E3泛素连接酶LTN1和RNF10之间的串扰。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-12-26 DOI: 10.1002/1873-3468.70230
Yuxi Huang, Satoshi Hashimoto, Sota Ito, Chisato Kikuguchi, Miho Hoshi, Kiyoshi Yamaguchi, Yoichi Furukawa, Toru Suzuki, Toshifumi Inada

During gene expression, ribosome stalling frequently occurs and can lead to detrimental effects on cellular homeostasis. Several quality control mechanisms, including ribosome-associated quality control (RQC) and nonfunctional ribosomal RNA decay (NRD), have been identified to resolve these aberrant translation events. While the molecular mechanisms of each pathway have been extensively characterized, the mechanisms underlying the mutual regulation of the expression of pathway factors remain to be elucidated. Here, we employed a series of knockout mouse and human cell lines to investigate the crosstalk between translational quality control factors. Our findings revealed that the E3 ubiquitin ligase LTN1 suppresses expression of the E3 ubiquitin ligase RNF10 in a manner dependent on the RING domain of LTN1. This discovery offers new insights into the coordination of translational surveillance pathways.

在基因表达过程中,核糖体迟滞经常发生,并可能导致细胞稳态的不利影响。一些质量控制机制,包括核糖体相关质量控制(RQC)和非功能性核糖体RNA衰变(NRD),已经被确定来解决这些异常翻译事件。虽然每种途径的分子机制已被广泛表征,但途径因子表达相互调节的机制仍有待阐明。在这里,我们使用一系列敲除小鼠和人类细胞系来研究翻译质量控制因子之间的串扰。我们的研究结果表明,E3泛素连接酶LTN1以依赖于LTN1的RING结构域的方式抑制E3泛素连接酶RNF10的表达。这一发现为翻译监测途径的协调提供了新的见解。
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引用次数: 0
EXPRESSION OF CONCERN: Circadian Gene Clock Contributes to Cell Proliferation and Migration of Glioma and Is Directly Regulated by Tumor-Suppressive miR-124 关注表达:昼夜节律基因时钟参与胶质瘤细胞增殖和迁移,并由肿瘤抑制miR-124直接调控。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-12-23 DOI: 10.1002/1873-3468.70258

EXPRESSION OF CONCERN: A. Li, X. Lin, X. Tan, B. Yin, W. Han, J. Zhao, J. Yuan, B. Qiang, and X. Peng, “ Circadian Gene Clock Contributes to Cell Proliferation and Migration of Glioma and Is Directly Regulated by Tumor-Suppressive miR-124,” FEBS Letters 587, no. 15 (2013): 2455-2460, https://doi.org/10.1016/j.febslet.2013.06.018.

This Expression of Concern is for the above article, published online on 19 June 2013, in Wiley Online Library (http://onlinelibrary.wiley.com/), and has been issued by agreement between the journal Editor-in-Chief, Michael Brunner; FEBS Press; and John Wiley and Sons Ltd. A third party reported that the siNC and siCLOCK images for U87MG cells in Figure 2D shared an overlapping section. An investigation by the journal confirmed these concerns.

The authors responded to an inquiry by the journal and supplied what were labeled as original data and a request for correction. The authors stated that the error in Figure 2D was caused by a mistake in the image compilation process. The journal reviewed the data provided, but they were unable to validate the experimental procedures used to generate the data. The journal reviewed the data provided, but were unable to confirm that it was acquired during the original study period. As such, the journal does not view a correction as appropriate. The Expression of Concern has been agreed to in order to inform and alert readers of the image overlap in Figure 2D. The authors disagree with the Expression of Concern.

关注表达:李安,林晓霞,谭晓霞,尹斌,韩伟,赵军,袁军,强b,彭晓霞,“基因时钟对胶质瘤细胞增殖和迁移的影响及其与肿瘤抑制因子miR-124的直接调控”,中国生物医学工程学报,587,no。15 (2013): 2455-2460, https://doi.org/10.1016/j.febslet.2013.06.018。本关注表达是针对上述文章,该文章于2013年6月19日在线发表在Wiley在线图书馆(http://onlinelibrary.wiley.com/),并经期刊主编Michael Brunner;2月出版社;及约翰威利父子有限公司。第三方报道,图2D中U87MG细胞的siNC和siCLOCK图像共享一个重叠的切片。《华尔街日报》的一项调查证实了这些担忧。作者回应了该杂志的询问,并提供了标记为原始数据的内容和更正请求。作者表示,图2D中的错误是由于图像编译过程中的错误造成的。该杂志审查了提供的数据,但他们无法验证用于生成数据的实验程序。该杂志审查了所提供的数据,但无法确认这些数据是在最初的研究期间获得的。因此,《华尔街日报》认为更正是不合适的。为了通知和提醒读者注意图2D中的图像重叠,我们同意了关注表达。作者不同意“关注表达”。
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引用次数: 0
Synthetic bioengineered macrophages for immune cell functions in infectious disease cellular therapy. 合成生物工程巨噬细胞在感染性疾病细胞治疗中的免疫功能。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-12-20 DOI: 10.1002/1873-3468.70254
Shweta Khandibharad, Shailza Singh

Cutaneous leishmaniasis (CL) presents diverse clinical challenges due to species-specific drug efficacy and resistance. We propose a novel therapeutic strategy using synthetic biology to reprogram macrophage responses. By engineering an inducible TET-ON gene circuit to express immunomodulatory PeptideA (PepA), we enhance IL-12 production and parasite clearance. Peptides were identified via AI and validated through molecular dynamics simulations. This approach shifts macrophages toward a pro-inflammatory M1 phenotype, improving infection outcomes. Delivery via Tac-6 nanogel and adoptive transfer enables in vivo expression. Our method offers targeted, controllable treatment for CL, potentially overcoming current limitations. This platform also provides a versatile pipeline for studying macrophage-associated infections and inflammatory diseases, paving the way for precision immunotherapy. Impact statement We present a synthetic biology-based approach to treat cutaneous leishmaniasis by reprogramming macrophages with an inducible gene circuit expressing AI-designed peptides that boost IL-12 production and parasite clearance. Delivered via Tac-6 nanogel, this strategy offers targeted, resistance-mitigating therapy and a versatile platform for macrophage-driven diseases.

皮肤利什曼病(CL)呈现不同的临床挑战,由于物种特异性的药物疗效和耐药性。我们提出了一种新的治疗策略,利用合成生物学来重编程巨噬细胞的反应。通过设计一个可诱导的TET-ON基因回路来表达免疫调节肽dea (PepA),我们提高了IL-12的产生和寄生虫的清除。通过人工智能识别多肽,并通过分子动力学模拟进行验证。这种方法将巨噬细胞转向促炎M1表型,改善感染结果。通过Tac-6纳米凝胶传递和过继转移实现体内表达。我们的方法为CL提供了有针对性、可控的治疗方法,有可能克服目前的局限性。该平台还为研究巨噬细胞相关感染和炎症性疾病提供了一个多功能的管道,为精确免疫治疗铺平了道路。我们提出了一种基于合成生物学的治疗皮肤利什曼病的方法,通过用表达ai设计的肽的诱导基因回路重编程巨噬细胞,促进IL-12的产生和寄生虫的清除。通过Tac-6纳米凝胶,该策略提供了靶向,耐药缓解治疗和巨噬细胞驱动疾病的多功能平台。
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引用次数: 0
Mechanisms of parasite-mediated disruption of brain vessels. 寄生虫介导的脑血管破坏机制。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-12-18 DOI: 10.1002/1873-3468.70255
Leonor Loira, Sílvia Arroz-Madeira, Cláudio A Franco, Sara Silva Pereira

The brain vasculature is a critical barrier to maintain central nervous system (CNS) homeostasis. Parasitic infections can profoundly disrupt the brain vasculature, with consequences ranging from subtle neurological alterations to severe, life-threatening pathologies. In this review, we explore the diverse mechanisms by which endoparasites interact with, modulate and breach CNS blood and lymphatic vessels. We highlight how these pathogens manipulate endothelial function, alter barrier permeability and exploit vascular surface molecules to access or influence the brain. These interactions often trigger local inflammation, endothelial activation and blood-brain barrier breakdown, with significant implications for parasite survival and host pathology. Here, we review the molecular and cellular mechanisms underlying these processes, providing an integrative view of parasite-vascular crosstalk in the brain and identifying emerging research areas. Understanding these interactions offers new insights into brain vascular disease pathogenesis and may inform future strategies for intervention.

脑血管是维持中枢神经系统(CNS)稳态的重要屏障。寄生虫感染可以严重破坏脑血管系统,其后果从细微的神经系统改变到严重的危及生命的病理。在这篇综述中,我们探讨了内寄生虫与中枢神经系统血液和淋巴管相互作用、调节和破坏的多种机制。我们强调这些病原体如何操纵内皮功能,改变屏障渗透性和利用血管表面分子进入或影响大脑。这些相互作用通常会引发局部炎症、内皮细胞激活和血脑屏障破坏,对寄生虫的生存和宿主病理有重要影响。在这里,我们回顾了这些过程背后的分子和细胞机制,提供了大脑中寄生虫-血管串扰的综合观点,并确定了新兴的研究领域。了解这些相互作用为脑血管疾病的发病机制提供了新的见解,并可能为未来的干预策略提供信息。
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引用次数: 0
STING agonists as antiviral agents. 作为抗病毒药物的STING激动剂。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-12-17 DOI: 10.1002/1873-3468.70251
Tiffany S Nelson, Zhe Ma

The cyclic GMP-AMP synthase-stimulator of interferon genes (cGAS-STING) pathway plays a pivotal role in mounting an innate immune response against invading pathogens. Activation of this pathway by exogenous or endogenous stimuli triggers the downstream production of interferons and both pro-/anti-inflammatory cytokines. Over the past decade, hundreds of patents have been filed for the development and use of natural and synthetic STING agonists. For antivirals, synthetic STING agonists have been shown to be effective in both prophylactic and anaphylactic manners against viral infection and serve as vaccine adjuvants. This review summarizes the current application of STING agonists as antivirals to date against a variety of RNA and DNA viruses.

干扰素基因环GMP-AMP合成酶刺激因子(cGAS-STING)通路在建立先天免疫应答以抵抗入侵病原体中起着关键作用。通过外源性或内源性刺激激活该途径可触发下游干扰素和促/抗炎细胞因子的产生。在过去的十年中,已经申请了数百项专利,用于开发和使用天然和合成的STING激动剂。对于抗病毒药物,合成STING激动剂已被证明在预防和过敏方式对病毒感染有效,并作为疫苗佐剂。本文综述了迄今为止STING激动剂作为抗病毒药物对多种RNA和DNA病毒的应用。
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引用次数: 0
The power of five - inositol polyphosphate 5-phosphatase gene mutations at the intersection of development and disease. 5-肌醇多磷酸5-磷酸酶基因突变在发育和疾病交叉点的作用。
IF 3 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-12-17 DOI: 10.1002/1873-3468.70247
Meagan J McGrath, Elizabeth M Davies, Lisa M Ooms, Randini Nanayakkara, Rajendra Gurung, Emily I Jones, Christina A Mitchell

Phosphoinositides are transient signaling lipids, derived from the reversible phosphorylation of phosphatidylinositol on intracellular membranes, which serve as master regulators of many essential cellular functions. Seven distinct phosphoinositide species require precise spatiotemporal control, which is regulated by specific phosphatidylinositol kinases and phosphatases. Here, we review one such family, the inositol polyphosphate 5-phosphatases, which comprise 10 mammalian enzymes that dephosphorylate the 5-position phosphate group from the inositol head group of PtdIns(4,5)P2, PtdIns(3,5)P2, and/or PtdIns(3,4,5)P3. Despite overlapping substrate specificities, the 5-phosphatases play nonredundant roles, including in development, as demonstrated by murine and zebrafish knockout studies. Mutations in several 5-phosphatase family members are associated with multisystem developmental and congenital syndromes. Associations between 5-phosphatase gene variants and diabetes and metabolic syndrome, neurodegenerative disease, and in rare cases cancer, are also emerging. Here, we provide a comprehensive discussion of the latest advances in this field, including updates on disease modeling and mechanisms.

磷脂肌醇是一种瞬时信号脂质,源于细胞膜上磷脂酰肌醇的可逆磷酸化,是许多基本细胞功能的主要调节剂。七种不同的磷酸肌醇需要精确的时空控制,这是由特定的磷脂酰肌醇激酶和磷酸酶调节的。在这里,我们回顾了一个这样的家族,即肌醇多磷酸5-磷酸酶,它包括10种哺乳动物酶,它们将PtdIns(4,5)P2, PtdIns(3,5)P2和/或PtdIns(3,4,5)P3的肌醇头基团的5位磷酸基去磷酸化。尽管有重叠的底物特异性,5-磷酸酶发挥了非冗余的作用,包括在发育中,正如小鼠和斑马鱼敲除研究所证明的那样。一些5-磷酸酶家族成员的突变与多系统发育和先天性综合征有关。5-磷酸酶基因变异与糖尿病、代谢综合征、神经退行性疾病以及罕见的癌症之间的联系也在出现。在这里,我们将全面讨论该领域的最新进展,包括疾病建模和机制的最新进展。
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引用次数: 0
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