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Homologous recombination-DNA damage response defects increase TMB and neoantigen load, but not effector T cell density and clonal diversity in pancreatic cancer. 同源重组- dna损伤反应缺陷增加胰腺癌中TMB和新抗原负荷,但不增加效应T细胞密度和克隆多样性。
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-06-18 DOI: 10.1186/s40164-025-00673-0
Mengyue Lei, Jessica Gai, Thomas J McPhaul, Huijuan Luo, Penghui Lin, Dongbing Liu, Michael Pishvaian, Nicholas J Roberts, Kui Wu, Jin He, Lei Zheng

Pancreatic ductal adenocarcinoma (PDAC) is highly resistant to chemotherapy. However, PDAC with germline BRCA mutations, which lead to homologous recombination (HR) deficiency (HRD), demonstrated an increased sensitivity to platinum-based chemotherapy regimens. This increased chemosensitivity was also seen in PDACs with germline or somatic mutations in the DNA double-strand damage response (DDR) genes beyond canonical HR genes such as BRCA1, BRCA2, and PALB2. However, there are no consensus methods to determine HRD status; and neither is there a well-defined list of HR-DDR genes. In addition, how HRD and/or HR-DDR gene mutation status impacts the tumor immune microenvironment including tumor mutation burden (TMB), neoantigen load, T cell receptor (TCR) repertoire, and effector T cell infiltration is unknown. Thus, in this study, we developed a new method to categorize PDACs into HRD-positive and HRD-negative subgroups by using results from whole exome sequencing, whole genome sequencing, or both into consideration. We classified a cohort of 89 PDACs into HRD-positive (n = 18) and HRD-negative (n = 69) tumors. HR-DDR gene variants were identified more frequently in HRD-positive PDACs than HRD-negative PDACs, with RAD51B, BRCA2 and ATM alterations most frequently identified in HRD-positive PDACs. Notably, TMB and neoantigen load was significantly higher in HRD-positive PDACs compared to HRD-negative tumors. Interestingly, HRD-positive PDACs, PDACs with high tumor mutational burden, and PDAC with high neoantigen load were all associated with lower CD8 + T lymphocyte infiltration and T cell clonal diversity, suggesting a mechanism of resistance to immune checkpoint inhibitors (ICIs). Therefore, this study suggests that treatments to enhance effector T cell infiltration and T cell clonal diversity may overcome resistance to ICI-based immunotherapy in HRD-positive PDACs.

胰腺导管腺癌(PDAC)对化疗具有高度耐药性。然而,伴有种系BRCA突变的PDAC,会导致同源重组(HR)缺陷(HRD),对铂类化疗方案的敏感性增加。除了典型的HR基因如BRCA1、BRCA2和PALB2外,在DNA双链损伤反应(DDR)基因发生种系或体细胞突变的pdac中也发现了这种增加的化学敏感性。然而,没有一致的方法来确定人力资源开发状况;也没有一个明确的HR-DDR基因列表。此外,HRD和/或HR-DDR基因突变状态如何影响肿瘤免疫微环境,包括肿瘤突变负荷(TMB)、新抗原负荷、T细胞受体(TCR)库和效应T细胞浸润尚不清楚。因此,在本研究中,我们开发了一种新的方法,通过使用全外显子组测序、全基因组测序或两者同时考虑的结果,将pdac分为hrd阳性和hrd阴性亚组。我们将89例pdac患者分为hrd阳性肿瘤(n = 18)和hrd阴性肿瘤(n = 69)。HR-DDR基因变异在hrd阳性的pdac中比在hrd阴性的pdac中更常见,其中RAD51B、BRCA2和ATM的改变在hrd阳性的pdac中最常见。值得注意的是,与hrd阴性的肿瘤相比,hrd阳性的pdac中TMB和新抗原载量明显更高。有趣的是,hrd阳性的PDAC、高肿瘤突变负荷的PDAC和高新抗原负荷的PDAC都与CD8 + T淋巴细胞浸润和T细胞克隆多样性降低相关,这提示了对免疫检查点抑制剂(ICIs)的抵抗机制。因此,本研究提示,增强效应T细胞浸润和T细胞克隆多样性的治疗可能克服hrd阳性pdac对基于ci的免疫治疗的耐药性。
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引用次数: 0
Advances and challenges in the treatment of myelodysplastic syndromes. 骨髓增生异常综合征治疗的进展和挑战。
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-06-18 DOI: 10.1186/s40164-025-00678-9
Rohit Thalla, Ryan Mack, Jorgena Kosti-Schwartz, Peter Breslin, Jiwang Zhang

Myelodysplastic syndromes (MDS) is a heterogeneous group of pre-leukemic diseases characterized by peripheral blood cytopenia, morphologic dysplasia, and an increased risk of transformation to leukemia. MDS develop from genetically mutant clonal hematopoietic stem and progenitor cells (HSPCs) which have defects in generating mature functional blood cells due to impaired differentiation and/or survival activities. In addition, mutant HSPCs also inhibit the generation of new blood cells from remaining healthy HSPCs. Thus, the complete elimination of mutant HSPCs is the optimal goal for MDS treatment. However, most current therapies for MDS are little more than palliative, primarily addressing cytopenia-related symptoms and improving the quality of life. Only the hypomethylating agents (HMA) lenalidomide and imetelstat reduced the mutational burden, and then only in a small subset of cases. Many HMA-based combination therapies failed to show benefits superior to single-agent HMA treatment in clinical trials. At the present time, allogeneic hematopoietic stem cell transplantation (allo-HSCT) is still the only cure for the minority of qualified patients who have HLA-matched donors. Novel effective treatments are urgently needed. Here we summarize the current standard therapeutic approaches for MDS patients and discuss major advances in MDS research and treatments. We also discuss major challenges and potential solutions to overcome these challenges for future MDS research and drug development.

骨髓增生异常综合征(MDS)是一种异质性白血病前期疾病,其特征是外周血细胞减少、形态发育不良和转化为白血病的风险增加。MDS由基因突变的克隆造血干细胞和祖细胞(HSPCs)发展而来,由于分化和/或存活活性受损,HSPCs在产生成熟的功能性血细胞方面存在缺陷。此外,突变的HSPCs还会抑制剩余健康HSPCs产生新的血细胞。因此,完全消除突变HSPCs是MDS治疗的最佳目标。然而,目前大多数MDS的治疗仅仅是姑息性的,主要是针对细胞减少相关症状和改善生活质量。只有低甲基化药物(HMA)来那度胺和依美特司他减轻了突变负担,并且仅在一小部分病例中。许多基于HMA的联合疗法在临床试验中未能显示出优于单药HMA治疗的益处。目前,同种异体造血干细胞移植(allo-HSCT)仍然是少数具有hla匹配供体的合格患者的唯一治疗方法。迫切需要新的有效治疗方法。本文总结了目前MDS患者的标准治疗方法,并讨论了MDS研究和治疗的主要进展。我们还讨论了未来MDS研究和药物开发面临的主要挑战和克服这些挑战的潜在解决方案。
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引用次数: 0
Multi-omics analyses of the heterogenous immune microenvironment in triple-negative breast cancer implicate UQCRFS1 potentiates tumor progression. 三阴性乳腺癌异质免疫微环境的多组学分析暗示UQCRFS1促进肿瘤进展。
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-06-16 DOI: 10.1186/s40164-025-00672-1
Yuhui Tang, Aiqi Xu, Zhongbiao Xu, Jindong Xie, Wei Huang, Liulu Zhang, Yitian Chen, Lu Yang, Shasha Du, Kun Wang

Background: Triple-negative breast cancer (TNBC) is commonly characterized by high-grade and aggressive features, resulting in an augmented likelihood of distant metastasis and inferior prognosis for patients. Tumor immune microenvironment (TME) has been recently considered to be tightly correlated with tumor progression and immunotherapy response. However, the actual heterogenous TME within TNBC remains more explorations.

Methods: The thorough analyses of different cell types within TME were conducted on the self-tested single-cell RNA sequencing dataset which contained nine TNBC treatment-naïve patients, including subclusters classification, CellChat algorithm, transcription factors (TFs) expression, pseudotime analysis and functional enrichment assay. The malignant epithelial cluster was confirmed by copy number variations analysis, and subsequently LASSO-Cox regression was carried out to establish a Malignant Cell Index (MCI) model on the basis of five crucial genes (BGN, SDC1, IMPDH2, SPINT1, and UQCRFS1), which was validated in several TNBC cohorts through Kaplan-Meier survival and immunotherapy response analyses. The public spatial transcriptome, proteome data and qRT-PCR, western blotting experiments were exploited to corroborate UQCRFS1 expression in RNA and protein levels. Additionally, functional experiments were implemented to unravel the impacts of UQCRFS1 on TNBC cells.

Results: The diverse subclusters of TME cells within TNBC were clarified to display distinct characteristics in cell-cell interactions, TFs expression, differentiation trajectory and functional pathways. Particularly, IL32high Treg imparted an essential effect on tumor evasion and predicted a worsened prognosis of TNBC patients. Furthermore, MCI model enabled to notify the inferior prognosis and immunotherapy resistance in TNBC. Ultimately, UQCRFS1 knockdown dampened the proliferative and migratory competence in vitro as well as tumor growth in vivo of TNBC cells.

Conclusions: Our study offers innovative perspectives on comprehending the heterogeneity within TME of TNBC, thereby facilitating the elucidation of TNBC biology and providing clinical recommendations for TNBC patients' prognosis, such as IL32high Treg infiltration, MCI evaluation, and UQCRFS1 expression.

背景:三阴性乳腺癌(TNBC)通常以高级别和侵袭性特征为特征,导致远处转移的可能性增加,患者预后较差。肿瘤免疫微环境(Tumor immune microenvironment, TME)近年来被认为与肿瘤进展和免疫治疗反应密切相关。然而,TNBC内部实际的异质性TME还有待进一步探索。方法:对包含9例TNBC treatment-naïve患者的自测单细胞RNA测序数据集进行TME内不同细胞类型的深入分析,包括亚簇分类、CellChat算法、转录因子(tf)表达、伪时间分析和功能富集分析。通过拷贝数变异分析确认恶性上皮细胞簇,随后进行LASSO-Cox回归,建立基于5个关键基因(BGN、SDC1、IMPDH2、SPINT1和UQCRFS1)的恶性细胞指数(malignant Cell Index, MCI)模型,并通过Kaplan-Meier生存和免疫治疗反应分析在多个TNBC队列中得到验证。利用公开的空间转录组、蛋白质组数据和qRT-PCR、western blotting实验验证UQCRFS1在RNA和蛋白水平上的表达。此外,我们还通过功能实验来揭示UQCRFS1对TNBC细胞的影响。结果:明确了TNBC中TME细胞的不同亚群,在细胞间相互作用、TFs表达、分化轨迹和功能途径等方面表现出不同的特点。特别是,il32高Treg对肿瘤逃逸具有重要作用,预示着TNBC患者预后恶化。此外,MCI模型能够预测TNBC的不良预后和免疫治疗抵抗。最终,UQCRFS1敲低抑制了TNBC细胞的体外增殖和迁移能力以及体内肿瘤生长。结论:我们的研究为理解TNBC TME内的异质性提供了创新的视角,从而有助于阐明TNBC生物学,为TNBC患者的预后提供临床建议,如il32高Treg浸润、MCI评估、UQCRFS1表达等。
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引用次数: 0
Correction: Lysin (K)-specific demethylase 1 inhibition enhances proteasome inhibitor response and overcomes drug resistance in multiple myeloma. 修正:在多发性骨髓瘤中,溶酶(K)特异性去甲基酶1抑制增强蛋白酶体抑制剂反应并克服耐药性。
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-06-13 DOI: 10.1186/s40164-025-00675-y
Cecilia Bandini, Elisabetta Mereu, Tina Paradzik, Maria Labrador, Monica Maccagno, Michela Cumerlato, Federico Oreglia, Lorenzo Prever, Veronica Manicardi, Elisa Taiana, Domenica Ronchetti, Mattia D'Agostino, Francesca Gay, Alessandra Larocca, Lenka Besse, Giorgio Roberto Merlo, Emilio Hirsch, Alessia Ciarrocchi, Giorgio Inghirami, Antonino Neri, Roberto Piva
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引用次数: 0
Comprehensive molecular characterization of adult H3K27M mutated thalamic glioma long-term survivors. 成人H3K27M突变丘脑胶质瘤长期幸存者的综合分子特征
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-06-13 DOI: 10.1186/s40164-025-00677-w
Hao Xu, Xiaomu Hu, Biyun Wang, Ying Sun, Ye Wang, Qisheng Tang, Qiongji Zhu, Kun Song, Hong Chen, Lingchao Chen, Haixia Cheng, Zhiyong Qin
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引用次数: 0
Platelets in cancer and immunotherapy: functional dynamics and therapeutic opportunities. 血小板在癌症和免疫治疗:功能动力学和治疗机会。
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-06-13 DOI: 10.1186/s40164-025-00676-x
Changjing Cai, Yiting Liu, Ruohuang Lu, Xudong Fan, Shan Zeng, Pingping Gan

Platelets play a critical role in tumor immunity, particularly in promoting cancer progression. Numerous studies suggest that platelets could serve as a novel target for cancer immunotherapy, however, no comprehensive reviews have yet summarized and discussed this potential. Our review provides an in-depth discussion of the roles and mechanisms of platelets within both the immunosuppressive tumor microenvironment and the anti-tumor immune microenvironment. Additionally, we summarize the key therapeutic targets and approaches for clinical translation. This work offers essential insights for reprogramming platelets to shift their function from tumor promotion to tumor suppression, providing a foundation for the development of novel immunotherapeutic strategies and related research.

血小板在肿瘤免疫中起关键作用,特别是在促进癌症进展方面。许多研究表明血小板可以作为癌症免疫治疗的新靶点,然而,尚未有全面的综述总结和讨论这种潜力。我们的综述深入讨论了血小板在免疫抑制肿瘤微环境和抗肿瘤免疫微环境中的作用和机制。此外,我们还总结了临床转化的关键治疗靶点和途径。这项工作为重新编程血小板将其功能从促进肿瘤转变为抑制肿瘤提供了重要的见解,为开发新的免疫治疗策略和相关研究提供了基础。
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引用次数: 0
Correction: IL‑6‑mediated tumorigenicity and antioxidant state in squamous cell carcinoma cells are driven by CD109 via stabilization of IL‑6 receptor‑alpha and activation of STAT3/NRF2 pathway. 更正:鳞状细胞癌细胞中IL - 6介导的致瘤性和抗氧化状态是由CD109通过IL - 6受体α的稳定和STAT3/NRF2通路的激活来驱动的。
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-05-31 DOI: 10.1186/s40164-025-00671-2
Amani Hassan, Tenzin Kungyal, Shufeng Zhou, Meryem Blati, Kenneth Finnson, Nick Bertos, Nahid Golabi, Nader Sadeghi, Sampath Loganathan, Anie Philip
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引用次数: 0
Exploring neutrophil extracellular traps: mechanisms of immune regulation and future therapeutic potential. 探索中性粒细胞胞外陷阱:免疫调节机制和未来的治疗潜力。
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-05-29 DOI: 10.1186/s40164-025-00670-3
Fan Gao, Hongwei Peng, Ruixue Gou, Yulan Zhou, Simei Ren, Fei Li

Neutrophil extracellular traps (NETs) are complex, web-like structures consisting of DNA intertwined with antimicrobial proteins, which neutrophils release upon immune activation. These structures play a crucial role in pathogen elimination, particularly in infectious diseases. However, their involvement in various pathological conditions is multifaceted and context-dependent, while NETs contribute to host defense against infections, they can also exacerbate sterile inflammation, autoimmune disorders, and tumor progression. This review provides a comprehensive analysis of the molecular mechanisms governing NET formation and examines their interactions with immune cells, emphasizing how these interactions shape immune responses and drive disease dynamics. Furthermore, it explores ongoing clinical trials and emerging therapeutic strategies targeting NETs, offering critical insights into their potential translational applications in clinical practice.

中性粒细胞胞外陷阱(NETs)是一种复杂的网状结构,由DNA与抗菌蛋白交织在一起,中性粒细胞在免疫激活时释放。这些结构在消除病原体,特别是在传染病中发挥关键作用。然而,它们在各种病理条件中的参与是多方面的和依赖于环境的,虽然net有助于宿主防御感染,但它们也可以加剧无菌炎症、自身免疫性疾病和肿瘤进展。这篇综述提供了控制NET形成的分子机制的全面分析,并研究了它们与免疫细胞的相互作用,强调了这些相互作用如何形成免疫反应和驱动疾病动力学。此外,它还探讨了针对NETs的正在进行的临床试验和新兴治疗策略,为其在临床实践中的潜在转化应用提供了关键见解。
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引用次数: 0
Targeting DNA helicase CMG complex and NFκB2-driven drug-resistant transcriptional axis to effectively treat KRASG12D-mutated pancreatic cancer. 靶向DNA解旋酶CMG复合物和nf κ b2驱动的耐药转录轴有效治疗krasg12d突变的胰腺癌
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-05-26 DOI: 10.1186/s40164-025-00669-w
Jeffrey Xiao, Joshua Kim, Brandon Park, David J Baylink, Cedric Kwon, Victoria Tran, Scott Lee, Kevin Codorniz, Laren Tan, Pamela Lobo Moreno, Amy Schill-Depew, Saied Mirshahidi, David De Semir, Diana Hanna, Kiran Naqvi, Huynh Cao, Chien-Shing Chen, Joanne Xiu, Heinz-Josef Lenz, Hamid Mirshahidi, Mark E Reeves, Yi Xu

Pancreatic ductal adenocarcinoma (PDAC) is a devastating malignancy with a 5-year overall survival (OS) rate of approximately 12%. More than 90% of PDAC patients harbor oncogenic mutations in the Kirsten rat sarcoma viral homolog (KRAS) gene. MRTX1133 (MRTX), a novel inhibitor of KRASG12D (the most common KRAS mutation found in pancreatic and colon cancers) has shown promise as a therapeutic agent. To address reported resistance to MRTX, we adapted our anti-leukemia co-targeting strategy and evaluated a combination of MRTX and Bedaquiline (BED), an FDA-approved inhibitor of mitochondrial ATP production, in in vitro human PDAC models. The combination of MRTX and BED demonstrated enhanced cytotoxic effects by disrupting all 11 genes within the DNA helicase family (CMG complex: CDC45-MCM-GINS), which are essential for initiating DNA replication and regulating cell cycle progression. Notably, real-world data analysis from Caris Life Sciences and NCI-TCGA database revealed that low transcriptomic expression of the DNA helicase CMG complex was significantly associated with prolonged survival (e.g., low CDC45 expression and low GINS2 expression with greater than 8 months longer overall survival) in PDAC patients with KRASG12 mutations (N = 9,717; P < 0.00001). However, this combination therapy also triggered strong pro-survival nuclear reprogramming. This effect was mediated by significant genetic activation of an NFκB2-DDIT (DNA damage-induced transcript) axis, which supported tumor chromosomal integrity and DNA repair mechanisms. To overcome NFκB2-driven resistance mechanisms, we explored a triple-targeting strategy that addresses metabolic and genomic plasticity in addition to actively intercepting cell division. This approach combines MRTX1133, Bedaquiline, and the NFκB2 inhibitor SN52, offering a novel therapeutic avenue to treat aggressive pancreatic cancer and potentially improve patient outcomes.

胰腺导管腺癌(PDAC)是一种毁灭性的恶性肿瘤,5年总生存率(OS)约为12%。超过90%的PDAC患者携带Kirsten大鼠肉瘤病毒同源基因(KRAS)的致癌突变。MRTX1133 (MRTX)是KRASG12D(胰腺癌和结肠癌中发现的最常见的KRAS突变)的一种新型抑制剂,已显示出作为治疗药物的前景。为了解决MRTX的耐药性问题,我们调整了抗白血病的共同靶向策略,并在体外人类PDAC模型中评估了MRTX和Bedaquiline (BED)的联合治疗。Bedaquiline是一种经fda批准的线粒体ATP产生抑制剂。MRTX和BED的组合通过破坏DNA解旋酶家族(CMG复合物:CDC45-MCM-GINS)中的所有11个基因,显示出增强的细胞毒性作用,这些基因对于启动DNA复制和调节细胞周期进程至关重要。值得注意的是,来自Caris生命科学和NCI-TCGA数据库的真实世界数据分析显示,在KRASG12突变的PDAC患者中,DNA解螺旋酶CMG复合物的低转录组表达与延长生存期(例如,CDC45低表达和GINS2低表达,总生存期延长8个月以上)显著相关(N = 9,717;P
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引用次数: 0
MENIN inhibitor-based therapy in acute leukemia: latest updates from the 2024 ASH annual meeting. 基于MENIN抑制剂的急性白血病治疗:来自2024年ASH年会的最新消息。
IF 9.4 1区 医学 Q1 HEMATOLOGY Pub Date : 2025-05-22 DOI: 10.1186/s40164-025-00668-x
Jiewen Sun, Wenjuan Yu, Xiang Zhang

Menin inhibitors (MENINis) represent a novel and promising class of therapeutic agents for acute leukemia (AL). AL subtypes driven by overexpressed HOXA9/MEIS1, such as those characterized by KMT2A-rearranged (KMT2Ar) or NPM1-mutated (NPM1m) AL, display sensitivity to MENINi. Consequently, approximately 40-50% of acute myeloid leukemia (AML) and 5-15% of acute lymphoblastic leukemia (ALL) patients may potentially benefit from MENINi-based therapy. At the 2024 ASH annual meeting, updated clinical data regarding monotherapy with MENINis in AL, including revumenib, bleximenib, enzomenib and BN104, were presented. Moreover, combination therapies based on MENINis were also reported to be highly effective in refractory/relapsed, or newly diagnosed KMT2Ar- and NPM1m-AML patients. Evidently, MENINis have demonstrated a considerable efficacy in KMT2Ar- and NPM1m-AML patients with a well-tolerance. Furthermore, the therapeutic effects of venetoclax plus azacitidine or "3 + 7" regimens were further enhanced by the addition of MENINis in KMT2Ar- and NPM1m-AML patients. Therefore, MENINis offer new therapeutic prospects for AML patients, particularly for those with high-risky and poor-prognostic on-target subtypes.

menin抑制剂(MENINis)代表了一类新的和有前途的治疗急性白血病(AL)的药物。由过表达的HOXA9/MEIS1驱动的AL亚型,如以kmt2a重排(KMT2Ar)或npm1突变(NPM1m) AL为特征的AL亚型,对MENINi表现出敏感性。因此,大约40-50%的急性髓性白血病(AML)和5-15%的急性淋巴细胞白血病(ALL)患者可能从基于menni的治疗中获益。在2024年ASH年会上,介绍了关于AL中MENINis单药治疗的最新临床数据,包括revumenib、bleximenib、enzomenib和BN104。此外,基于MENINis的联合治疗也被报道在难治性/复发性或新诊断的KMT2Ar-和NPM1m-AML患者中非常有效。显然,MENINis在KMT2Ar-和NPM1m-AML患者中表现出相当大的疗效并具有良好的耐受性。此外,通过在KMT2Ar-和NPM1m-AML患者中添加MENINis, venetoclax +阿扎胞苷或“3 + 7”方案的治疗效果进一步增强。因此,MENINis为AML患者提供了新的治疗前景,特别是对于那些高风险和预后不良的靶向亚型患者。
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引用次数: 0
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Experimental Hematology & Oncology
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