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Rapid and visual detection of Listeria monocytogenes by combining one-pot LAMP–CRISPR/Cas12b with lateral flow assay LAMP-CRISPR /Cas12b单锅法与横向流动法联合检测单核增生李斯特菌
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-04 DOI: 10.1016/j.fm.2025.104977
Xuelan Liu , Yuting Zheng , Zhiwei Chen , Shiqi Wang , Hongyan Liao , Jianye Jia , Guijun Wang , Jialing Wang , Chunyan Yuan , Xiaoxi Guo , Yuelan Yin , Qinghai Hu
Listeria monocytogenes, the leading cause of fatalities worldwide among foodborne pathogens, poses serious risks to food safety and public health. Therefore, a rapid and accurate detection method is crucial for early interception and effective management. In this study, a one-pot LAMP–CRISPR/Cas12b detection system based on the lmo0753 gene was developed for rapid detection of L. monocytogenes by combining loop-mediated isothermal amplification (LAMP) with a CRISPR/Cas12b assay. Further integration of a lateral flow assay (LFA) to develop a LAMP–CRISPR/Cas12b–LFA assay enabled direct detection of the results on the strips with the naked eye. Nine L. monocytogenes strains belonging to eight serotypes tested positive with both the one-pot LAMP–CRISPR/Cas12b and LAMP–CRISPR/Cas12b–LFA assays. Two assays did not show cross-reactivity with L. innocua and eight other foodborne bacteria. The limits of detection were 10 CFU/mL for pure culture and 20 CFU/g for spiked pork samples. Moreover, the enrichment time was substantially shortened to 3 h for pork samples spiked with only L. monocytogenes F2365, and 4–5 h for pork samples spiked with mixed bacteria. In addition, with one-pot LAMP-CRISPR/Cas12b detection, 5 of 66 fresh pork samples, 1 of 20 ready-to-eat food samples, and 2 of 24 raw milk samples tested positive for L. monocytogenes, in agreement with the results obtained through a culture based standard method. Thus, this study established one-pot LAMP–CRISPR/Cas12b and LAMP–CRISPR/Cas12b–LFA assays for rapid, visual detection of L. monocytogenes in food samples.
单核细胞增生李斯特菌是全世界食源性病原体中导致死亡的主要原因,对食品安全和公共卫生构成严重风险。因此,快速准确的检测方法对于早期拦截和有效管理至关重要。本研究基于lmo0753基因,将环介导等温扩增(loop-mediated isothermal amplification, LAMP)技术与CRISPR/Cas12b技术相结合,建立了单锅LAMP - CRISPR/Cas12b检测系统,用于单核增生乳杆菌的快速检测。进一步整合横向流动试验(LFA)以开发LAMP-CRISPR / Cas12b-LFA试验,从而可以用肉眼直接检测试纸上的结果。LAMP-CRISPR /Cas12b和LAMP-CRISPR /Cas12b - lfa对8种血清型的9株单增乳杆菌均呈阳性。两项试验未显示与innocul和其他8种食源性细菌的交叉反应。纯培养的检出限为10 CFU/mL,加标猪肉样品的检出限为20 CFU/g。此外,仅添加单核增生乳杆菌F2365的猪肉样品的富集时间大幅缩短至3 h,混合细菌添加的猪肉样品的富集时间为4-5 h。此外,通过一锅LAMP-CRISPR/Cas12b检测,66份新鲜猪肉样品中有5份、20份即食食品样品中有1份、24份原料奶样品中有2份单核细胞增生乳杆菌阳性,与基于培养的标准方法检测结果一致。因此,本研究建立了单锅LAMP-CRISPR /Cas12b和LAMP-CRISPR /Cas12b - lfa检测食品样品中单核细胞增生乳杆菌的方法。
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引用次数: 0
A synthetic microbial community enhances flavor and safety in reduced-salt soy sauce fermentation: Multi-omics insights into microbial stabilization and metabolic regulation 合成微生物群落提高风味和安全性在低盐酱油发酵:多组学的见解微生物稳定和代谢调节
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-30 DOI: 10.1016/j.fm.2025.104974
Lin Zhang, Yi Zhang, Jun Huang, Rongqing Zhou, Chongde Wu
Reducing sodium in soy sauce fermentation while preserving flavor and safety presents significant technical challenges. To address this, we constructed a synthetic microbial community (SynMC) comprising Tetragenococcus halophilus T10, Zygosaccharomyces rouxii QH-25, and Wickerhamiella versatilis CGMCC 3790 for reduced-salt fermentation (13 %NaCl). Multi-omics analysis revealed three coordinated improvements: First, microbial community stabilization through suppression of spoilage taxa (e.g., Millerozyma) and enrichment of functional genera (e.g., Wickerhamiella), reducing negative ecological correlations from 5.3 % to 1.7 % compared to the low-salinity control group. Second, metabolic restructuring enhanced characteristic aromas while reducing biogenic amines (BAs) to 21.98 mg/L (76 % lower than L group). Third, metatranscriptomics identified upregulated amino acid metabolism (238 % more BA-degrading enzymes) and carbohydrate utilization pathways. These synergistic effects indicate that strategic microbial consortia design can overcome the salt reduction challenge through targeted ecological and metabolic regulation, enabling industrial-scale production of superior, safer low-salt soy sauce.
在酱油发酵过程中,降低酱油中的钠含量,同时保证酱油的风味和安全性,是一项重大的技术挑战。为了解决这个问题,我们构建了一个由嗜盐四芽球菌T10、Zygosaccharomyces rouxii QH-25和多面Wickerhamiella vecerhamiella 3790组成的合成微生物群落(SynMC),进行了13% NaCl的还原发酵。多组学分析显示了三个协同改善:首先,通过抑制腐败分类群(如千霉菌)和丰富功能属(如Wickerhamiella),微生物群落稳定,与低盐度对照组相比,负生态相关性从5.3%降低到1.7%。其次,代谢重组增强了特征香气,同时将生物胺(BAs)降低到21.98 mg/L(比L组低76%)。第三,超转录组学鉴定出氨基酸代谢上调(ba降解酶增加238%)和碳水化合物利用途径。这些协同效应表明,战略性微生物联合体设计可以通过有针对性的生态和代谢调节来克服减盐挑战,从而实现优质、更安全的低盐酱油的工业规模生产。
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引用次数: 0
Revealing the most contaminated stages and spots of foodborne pathogens and antibiotic resistance along the whole fish production chain in Greek aquaculture 揭示希腊水产养殖中整个鱼类生产链中受污染最严重的食源性病原体和抗生素耐药性阶段和点
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-29 DOI: 10.1016/j.fm.2025.104973
Evangelia A. Karamani, Dimitrios A. Anagnostopoulos, Athanasios Tsiartsafis, Stavroula Letsiou, Ioannis S. Boziaris, Foteini F. Parlapani
Aquaculture constitutes a significant reservoir for antibiotic-resistant bacteria (ARB) posing substantial risks to seafood consumers and public health. This study aimed to reveal the most contaminated stages and spots of foodborne pathogens, and ARB along the whole fish production chain in Greece. To reach this aim, samples (water, surfaces, fish feed, and fish) were collected from multiple spots (e.g. surfaces, equipment) of all stages of the entire chain, from farming to packaging, and analyzed for their microbiological and antibiotic resistance status through classical and molecular approaches. At population point of view, surfaces from broodstock, larvae and pre-fattening tanks were found to be the most burdened spots in farming stages, recording levels close to 5 log cfu/ml or g or cm2, while the most burdened spots were found to be on working surfaces before and after decontamination, the concrete floor, transport boxes for fish and fish samples in processing. Based on High-Resolution Melting analysis (HRM) followed by Sanger sequencing, the potential pathogenic microbiota, mainly consisting of Enterococcus spp., Serratia spp., Morganella morganii and Klebsiella pneumoniae. at both pre-fattening and processing stages, indicating the possible transfer of these microorganisms along the fish production chain. These potential pathogens, mainly isolated from surfaces and water of weaning and pre-fattening tanks, fish feeds, working surfaces, fish transport boxes, concrete floors and fish especially from transport boxes and harvesting, presented a noteworthy resistance to most antibiotics tested (e.g., Clindamycin, Nalidixic acid, Streptomycin, Sulphonamides, Ceftazidime, Erythromycin, Vancomycin, Penicillin G, and Cefoxitin). The findings underscore the importance of early detection and intervention strategies to mitigate ARB transmission, thereby enhancing the safety and quality of aquaculture products.
水产养殖是耐抗生素细菌(ARB)的重要蓄水池,对海产品消费者和公众健康构成重大风险。本研究旨在揭示希腊整个鱼类生产链中食源性病原体和ARB污染最严重的阶段和地点。为了实现这一目标,从整个链条的各个阶段(从养殖到包装)的多个地点(例如表面、设备)收集样本(水、表面、鱼饲料和鱼),并通过经典和分子方法分析其微生物和抗生素耐药性状况。从种群的角度来看,在养殖阶段,来自亲鱼、幼虫和育肥池的表面被发现是负担最重的点,记录的水平接近5 log cfu/ml或g或cm2,而负担最重的点被发现在去污前后的工作表面、混凝土地板、鱼的运输箱和加工中的鱼样品。基于高分辨率熔融分析(HRM)和Sanger测序,潜在致病菌群主要包括肠球菌、沙雷氏菌、摩根氏菌和肺炎克雷伯菌。在育肥前和加工阶段,表明这些微生物可能沿着鱼类生产链转移。这些潜在病原体主要分离于断奶池和育肥池的表面和水中、鱼饲料、工作表面、鱼运输箱、混凝土地板和鱼,特别是来自运输箱和收获的鱼,它们对大多数所测试的抗生素(如克林霉素、钠利地酸、链霉素、磺胺类药物、头孢他啶、红霉素、万古霉素、青霉素G和头孢西丁)表现出显著的耐药性。研究结果强调了早期发现和干预策略对减轻ARB传播的重要性,从而提高水产养殖产品的安全性和质量。
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引用次数: 0
Levan produced by probiotic Bacillus subtilis CU1 inhibits human norovirus GII.4 replication in zebrafish via high-avidity binding 由枯草芽孢杆菌CU1产生的Levan通过高亲和力结合抑制人类诺如病毒GII.4在斑马鱼体内的复制
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-25 DOI: 10.1016/j.fm.2025.104970
Siyu Chen , Malcolm Turk Hsern Tan , Jillinda Yi Ling Toh , Hong Bai , Qian Hua , Yu Keung Mok , Wenkang Wang , Shiguo Chen , Dan Li
This study investigated the antiviral potential of exopolysaccharides (EPSs) from probiotic bacteria against human noroviruses (hNoVs). EPSs from Bacillus subtilis CU1, B. subtilis R0179, and Lactiplantibacillus plantarum 299V were initially evaluated using Tulane virus (TV), a cultivable hNoV surrogate. Although EPSs reduced the cytopathic effects caused by TV infection, no clear dose-response relationship was observed. In contrast, the zebrafish model enabled testing of hNoV strains and revealed a distinct anti-hNoV GII.4 activity specific to EPS from B. subtilis CU1. This effect was virus genotype- and bacteria strain-specific: EPSs from B. subtilis R0179 and L. plantarum 299V showed no activity, nor did CU1 EPS affect hNoV GII.2 or GII.17. The major EPS fraction was identified as a levan composed of β-(2,6)-linked Fruf, which exhibited high binding affinity to hNoV GII.4 virus-like particles and P particles, confirmed by saliva-binding ELISA and bio-layer interferometry. Finally, B. subtilis CU1 was used to ferment carrot juice. The antiviral effect of EPS produced by B. subtilis CU1 in fermented carrot juice was validated, and the EPS yield was optimized accordingly. These findings highlight B. subtilis CU1 EPS as a promising anti-hNoVs agent and demonstrate carrot juice as a safe, cost-effective substrate for scalable production of functional probiotic EPSs.
本研究探讨了益生菌胞外多糖(eps)对人诺如病毒(hNoVs)的抗病毒作用。采用可培养的hNoV替代物杜兰病毒(Tulane virus, TV)对枯草芽孢杆菌CU1、枯草芽孢杆菌R0179和植物乳杆菌299V的EPSs进行初步鉴定。虽然EPSs降低了TV感染引起的细胞病变,但没有观察到明确的剂量-反应关系。相比之下,斑马鱼模型能够测试hNoV菌株,并显示出对枯草芽孢杆菌CU1的EPS具有明显的抗hNoV GII.4活性。这种影响是病毒基因型和细菌菌株特异性的:枯草芽孢杆菌R0179和植物芽孢杆菌299V的EPS没有活性,CU1 EPS也不影响hNoV GII.2或GII.17。经唾液结合ELISA和生物层干涉测定证实,EPS主要为β-(2,6)-linked Fruf组成的levan,对hNoV - GII.4病毒样颗粒和P颗粒具有较高的结合亲和力。最后,利用枯草芽孢杆菌CU1发酵胡萝卜汁。验证了枯草芽孢杆菌CU1对发酵胡萝卜汁中EPS的抗病毒作用,并对EPS产量进行了优化。这些发现强调枯草芽孢杆菌CU1 EPS是一种很有前途的抗hnovs剂,并证明胡萝卜汁是一种安全、经济的底物,可大规模生产功能性益生菌EPS。
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引用次数: 0
Survival of foodborne pathogens in Acanthamoeba castellanii cysts on fresh and pickled cucumber and cauliflower 食源性致病菌在鲜黄瓜和腌制黄瓜和花椰菜上的存活
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-25 DOI: 10.1016/j.fm.2025.104971
Shirin Safaeian, Mehdi Zarei, Somayeh Bahrami
Foodborne pathogens remain a significant public health concern, with fresh and minimally processed vegetables serving as potential transmission vectors. Acanthamoeba castellanii, a free-living protozoan, can harbor pathogenic bacteria within its cysts, potentially enhancing their survival under adverse conditions. While pickling is known to reduce microbial contamination through acidic and osmotic stress, its efficacy against pathogens protected within Acanthamoeba cysts remains unclear. This study investigated the survival of Salmonella Typhimurium, Escherichia coli O157:H7, Listeria monocytogenes, and Staphylococcus aureus within A. castellanii cysts on fresh and pickled cucumbers and cauliflowers over storage periods of 9 and 21 days, respectively. Coculture experiments revealed that E. coli O157:H7 was internalized by A. castellanii trophozoites at significantly higher rates than the other pathogens. Encystment rates increased over time but were unaffected by the bacterial species harbored within the amoebae. On fresh produce, although bacterial release into nutrient-rich medium during excystment varied by pathogen and produce type, Acanthamoeba cysts consistently served as a protective reservoir, maintaining viable intracellular populations throughout the storage period. In pickled samples, E. coli O157:H7 and L. monocytogenes exhibited prolonged survival, releasing into nutrient-rich medium during excystment for up to 16 days and persisting within trophozoites. S. aureus showed extended retention inside excysted trophozoites, while S. Typhimurium displayed lower but consistent survival. These findings highlight the protective role of A. castellanii cysts, which enable foodborne pathogens to withstand the acidic and osmotic stresses encountered during pickling. The study underscores the potential risk of protozoan-mediated pathogen persistence in both fresh and pickled produce, emphasizing the need for improved food safety interventions that account for amoeba-bacteria interactions.
食源性病原体仍然是一个重大的公共卫生问题,新鲜和最低限度加工的蔬菜是潜在的传播媒介。castellanii棘阿米巴是一种自由生活的原生动物,它可以在其囊内携带致病菌,从而潜在地提高致病菌在不利条件下的存活率。虽然已知酸洗可以通过酸性和渗透胁迫减少微生物污染,但其对棘阿米巴囊内保护的病原体的功效尚不清楚。本研究研究了在新鲜黄瓜和腌黄瓜和花椰菜上分别储存9天和21天的鼠伤寒沙门氏菌、大肠杆菌O157:H7、单核增生李斯特菌和金黄色葡萄球菌在castellanii囊内的存活情况。共培养实验表明,大肠杆菌O157:H7被castellani滋养体内化的率明显高于其他病原体。随着时间的推移,成囊率增加,但不受阿米巴体内细菌种类的影响。在新鲜农产品中,尽管细菌在提取过程中释放到富含营养的培养基中因病原体和产品类型而异,但棘阿米巴囊始终作为保护性储存库,在整个储存期间保持细胞内存活的种群。在腌制样品中,大肠杆菌O157:H7和单核增生乳杆菌表现出较长的存活时间,在排泄过程中释放到富含营养的培养基中长达16天,并在滋养体中持续存在。金黄色葡萄球菌在脱落的滋养体中表现出长时间的滞留,而鼠伤寒葡萄球菌表现出较低但一致的存活。这些发现强调了castellanii包囊的保护作用,它使食源性病原体能够承受酸洗过程中遇到的酸性和渗透胁迫。该研究强调了原生动物介导的病原体在新鲜和腌制农产品中持续存在的潜在风险,强调了改进食品安全干预措施的必要性,这些干预措施可以解释变形虫与细菌的相互作用。
{"title":"Survival of foodborne pathogens in Acanthamoeba castellanii cysts on fresh and pickled cucumber and cauliflower","authors":"Shirin Safaeian,&nbsp;Mehdi Zarei,&nbsp;Somayeh Bahrami","doi":"10.1016/j.fm.2025.104971","DOIUrl":"10.1016/j.fm.2025.104971","url":null,"abstract":"<div><div>Foodborne pathogens remain a significant public health concern, with fresh and minimally processed vegetables serving as potential transmission vectors. <em>Acanthamoeba castellanii</em>, a free-living protozoan, can harbor pathogenic bacteria within its cysts, potentially enhancing their survival under adverse conditions. While pickling is known to reduce microbial contamination through acidic and osmotic stress, its efficacy against pathogens protected within <em>Acanthamoeba</em> cysts remains unclear. This study investigated the survival of <em>Salmonella</em> Typhimurium, <em>Escherichia coli</em> O157:H7, <em>Listeria monocytogenes</em>, and <em>Staphylococcus aureus</em> within <em>A. castellanii</em> cysts on fresh and pickled cucumbers and cauliflowers over storage periods of 9 and 21 days, respectively. Coculture experiments revealed that <em>E. coli</em> O157:H7 was internalized by <em>A. castellanii</em> trophozoites at significantly higher rates than the other pathogens. Encystment rates increased over time but were unaffected by the bacterial species harbored within the amoebae. On fresh produce, although bacterial release into nutrient-rich medium during excystment varied by pathogen and produce type, <em>Acanthamoeba</em> cysts consistently served as a protective reservoir, maintaining viable intracellular populations throughout the storage period. In pickled samples, <em>E. coli</em> O157:H7 and <em>L. monocytogenes</em> exhibited prolonged survival, releasing into nutrient-rich medium during excystment for up to 16 days and persisting within trophozoites. <em>S. aureus</em> showed extended retention inside excysted trophozoites, while <em>S.</em> Typhimurium displayed lower but consistent survival. These findings highlight the protective role of <em>A. castellanii</em> cysts, which enable foodborne pathogens to withstand the acidic and osmotic stresses encountered during pickling. The study underscores the potential risk of protozoan-mediated pathogen persistence in both fresh and pickled produce, emphasizing the need for improved food safety interventions that account for amoeba-bacteria interactions.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"135 ","pages":"Article 104971"},"PeriodicalIF":4.6,"publicationDate":"2025-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145414008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of qPCR-PMAxx™ and ddPCR-PMAxx™ methods for quantitative detection of viable but not culturable Cronobacter sakazakii on stainless steel surfaces after desiccation and exposure to commercial disinfectant 开发qPCR-PMAxx™和ddPCR-PMAxx™方法,用于在干燥和暴露于商业消毒剂后的不锈钢表面上定量检测活的但不可培养的阪崎克罗诺杆菌
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-24 DOI: 10.1016/j.fm.2025.104969
Romain Delattre , Brice Bargoumane , Karine Le Barillec , Simon Le Hello , Aurélie Hanin
Cronobacter spp. is an opportunistic foodborne pathogen responsible for life-threatening infections such as meningitis and necrotizing enterocolitis in neonates, but also for various complications in elderly and immunocompromised people. Environmental monitoring in powdered milk manufacturing plants shows that Cronobacter can persist in production environments for long periods of time. The aim of this study is to develop a method to assess the viability of Cronobacter cells after implementation of stress encountered in industries to determine whether this bacterium can persist in processing environments in a dormant state known as Viable But Non-Cultivable (VBNC) state, making it undetectable by conventional enumeration methods. We developed two detection systems specific to the genus Cronobacter based on quantitative PCR (qPCR) and Droplet Digital PCR (ddPCR) in combination with a PMAxx™ (Propidium Monoazide) treatment and agar enumeration to assess the viability of detected cells. Despite a better sensitivity for ddPCR, qPCR-PMAxx™ was more suitable for VBNC detection, as it effectively differentiates viable from dead cells. Desiccation at 58 °C and 20 % relative humidity led to a significant reduction in culturable bacteria, with a drop from 6.82 to 2.58 log copies of genome per coupon over 48 h, while qPCR-PMAxx™ revealed that the proportion of VBNC cells represents approximately 1/100 of the total population of viable bacteria (V). Similarly, treatment of Cronobacter biofilms with a peracetic acid containing disinfectant induced the VBNC state in Cronobacter. The ability of this bacterium to enter the VBNC state may explain its long-term survival in processing plants and highlights the need for appropriate detection methods for effective environmental monitoring plans.
克罗诺杆菌是一种机会性食源性病原体,可导致危及生命的感染,如新生儿脑膜炎和坏死性小肠结肠炎,但也可导致老年人和免疫功能低下人群的各种并发症。奶粉生产厂的环境监测表明,克罗诺杆菌可在生产环境中长期存在。本研究的目的是开发一种方法来评估克罗诺杆菌细胞在工业中遇到的压力后的生存能力,以确定这种细菌是否能在加工环境中以休眠状态持续存在,这种状态被称为可存活但不可培养(VBNC)状态,使其无法通过传统的枚举方法检测到。我们开发了两种针对克罗诺杆菌属的检测系统,基于定量PCR (qPCR)和液滴数字PCR (ddPCR),结合PMAxx™(单叠氮丙啶)处理和琼脂计数来评估检测细胞的活力。尽管对ddPCR有更好的灵敏度,但qPCR-PMAxx™更适合于VBNC检测,因为它能有效地区分活细胞和死细胞。在58°C和20%相对湿度下的干燥导致可培养细菌的显著减少,在48小时内从6.82个基因组拷贝下降到2.58个对数拷贝,而qPCR-PMAxx™显示VBNC细胞的比例约占活菌总数的1/100 (V)。同样,用含过氧乙酸的消毒剂处理克罗诺杆菌生物膜可诱导克罗诺杆菌的VBNC状态。这种细菌进入VBNC状态的能力可能解释了它在加工厂中的长期生存,并强调了为有效的环境监测计划提供适当的检测方法的必要性。
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引用次数: 0
Prevalence and genomic characterization of pathogenic blaNDM-positive Escherichia coli from retail meats: The first large-scale study in 22 cities of China 零售肉类致病性blandm阳性大肠杆菌的流行率和基因组特征:中国22个城市的首次大规模研究
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-23 DOI: 10.1016/j.fm.2025.104948
Mei-Jun Chu , Ming Zou , Han Wang , Junjie Wang , Zhiyuan You , Yan Li , Bao-Tao Liu
Retail meat is a suspected reservoir of blaNDM-positive carbapenem-resistant Escherichia coli (CREC), resulting in foodborne illnesses in humans. Abuse of antibiotics in swine and chicken farming is common in China, however, large-scale studies about blaNDM-positive CREC from retail meats and their pathogenicity in China are rare. In the present study, we sampled 817 pork and chicken meats, from 152 markets in 22 cities of China, during the period of 2017–2020, and analyzed the prevalence of and genomic characteristics of pathogenic blaNDM-positive CREC. A total of 203 CREC carrying 7 blaNDM variants were obtained in the 185 CREC-positive meat samples. Notably, 37.2 % of the blaNDM-positive isolates co-harbored mcr-1, conferring resistance to nearly all currently available antibiotics. We firstly revealed high prevalence rates of blaNDM-positive ExPEC (extraintestinal pathogenic E. coli, 19.1 %), APEC (avian pathogenic E. coli, 29.0 %) and UPEC (uropathogenic E. coli, 32.2 %) in retail meats in China, and found that chicken meat had a higher detection rate of pathogenic CREC than pork. The most common blaNDM subtype in pathogenic strains was blaNDM-5, followed by blaNDM-9. The blaNDM-13 subtype was firstly found in isolates from meat. Whole-genome sequencing showed these pathogenic strains had high genetic diversity, with ST457, ST156 and ST6751 being the main sequence types. The genetic relationship among CREC of different origins based on phylogenomic analysis indicated the wide spread of these isolates, which was confirmed by the high similarities of the blaNDM/mcr-1-bearing plasmids from meats and from animals and humans in different geographical areas. The horizontal transmission of these multidrug-resistant pathogens was mainly mediated by transferable blaNDM-5-bearing IncFIB, IncFIC and IncX3 plasmids, blaNDM-9-bearing IncB/O plasmids and mcr-1-bearing IncI2 and IncX4 plasmids. This study highlighted retail meat could act as an important vehicle for spreading pathogenic blaNDM-positive CREC between animals and humans.
零售肉类被怀疑是blandm阳性碳青霉烯耐药大肠杆菌(CREC)的储存库,导致人类食源性疾病。在中国,养猪场和养鸡场滥用抗生素很常见,然而,关于零售肉类中blandm阳性的CREC及其致病性的大规模研究在中国很少。在本研究中,我们从2017-2020年中国22个城市的152个市场中取样了817种猪肉和鸡肉,分析了致病性blandm阳性CREC的患病率和基因组特征。在185份crecc阳性的肉类样本中,共获得203个携带7种blaNDM变体的CREC。值得注意的是,37.2%的blandm阳性分离株同时携带mcr-1,对几乎所有目前可用的抗生素都具有耐药性。我们首先发现blandm阳性的expc(肠外致病性大肠杆菌,19.1%)、APEC(禽源致病性大肠杆菌,29.0%)和UPEC(尿源致病性大肠杆菌,32.2%)在中国零售肉类中具有较高的流行率,并发现鸡肉致病性CREC的检出率高于猪肉。致病性菌株中最常见的blaNDM亚型为blaNDM-5,其次为blaNDM-9。blaNDM-13亚型首次在肉类分离株中发现。全基因组测序结果显示,这些致病菌株具有较高的遗传多样性,主要序列类型为ST457、ST156和ST6751。基于系统基因组分析的不同来源的CREC的遗传关系表明,这些分离株分布广泛,来自不同地理区域的肉类、动物和人类携带blaNDM/mcr-1的质粒高度相似,证实了这一点。这些多药耐药病原菌的水平传播主要由携带blandm -5的IncFIB、IncFIC和IncX3质粒、携带blandm -9的IncB/O质粒和携带mcr-1的inc2和IncX4质粒介导。这项研究强调,零售肉类可能是动物和人类之间传播致病性blandm阳性CREC的重要载体。
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引用次数: 0
Persistence of vegetative and sporulated forms of Clostridium perfringens exposed to air at different relative humidities 暴露于不同相对湿度空气中的产气荚膜梭菌的营养型和孢子型的持久性
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-21 DOI: 10.1016/j.fm.2025.104968
Léa Savard , Sylvie Moundanga , Stéphane Guyot , Narjes Mtimet , Olivier Firmesse , Sébastien Dupont , Laurent Beney
C. perfringens, an anaerobic bacterium, is a common cause of food poisoning that can persist on surfaces in slaughterhouses. However, the mechanisms governing its survival in such environments – characterised by variations in relative air humidity (RAH) – remain poorly understood. This study aimed to evaluate the effect of air exposure on C. perfringens survival and to identify the mechanisms responsible for its inactivation. Vegetative cells and spores of C. perfringens were deposited on inert surfaces and exposed to different RAH (11 %, 43 %, 75 %, 100 %) under both aerobic and anaerobic conditions, to assess the contributions of osmotic and oxidative effects induced by dehydration to cell death. At low RAH, more than 99 % of vegetative cells were inactivated within one day, regardless of oxygen presence. Epifluorescence microscopy and flow cytometry analyses revealed that dehydration and rehydration disrupted membrane integrity, contributing to inactivation through lethal mechanical damage. At 100 % RAH, vegetative cells survived over 3 days under aerobic conditions (>1 %) and over 30 days under anaerobic conditions (>0.003 %). The composition of the dehydration medium had little effect on cell survival. In contrast, spores were much more resistant, with around 10 % survival after two months of stress in presence of oxygen, without any significant effect of dehydration. These results highlight the potential of exploiting RAH fluctuations to develop control strategies targeting C. perfringens vegetative cells. However, the extreme resilience of spores confirms the need for specific and targeted decontamination methods to eliminate them effectively.
产气荚膜梭菌是一种厌氧细菌,是导致食物中毒的常见原因,它可以在屠宰场的表面持续存在。然而,控制其在这种环境中生存的机制——以相对空气湿度(RAH)的变化为特征——仍然知之甚少。本研究旨在评估空气暴露对产气荚膜梭菌存活的影响,并确定其失活的机制。将产气荚膜梭菌的营养细胞和孢子沉积在惰性表面,并在好氧和厌氧条件下暴露于不同的RAH(11%, 43%, 75%, 100%),以评估脱水诱导的渗透和氧化作用对细胞死亡的贡献。在低RAH条件下,超过99%的营养细胞在一天内失活,无论是否有氧气存在。荧光显微镜和流式细胞术分析显示,脱水和再水化破坏了膜的完整性,通过致命的机械损伤导致失活。在100% RAH条件下,营养细胞在好氧条件下存活超过3天(> 1%),在厌氧条件下存活超过30天(> 0.003%)。脱水培养基的组成对细胞存活影响不大。相比之下,孢子的抵抗力要强得多,在氧气存在的压力下存活了两个月,存活率约为10%,没有任何明显的脱水影响。这些结果突出了利用RAH波动来开发针对产气荚膜梭菌营养细胞的控制策略的潜力。然而,孢子的极端弹性证实了需要特定的和有针对性的净化方法来有效地消除它们。
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引用次数: 0
Antimicrobial mist pretreatment for enhancing superheated steam efficacy in inactivating Enterococcus faecium NRRL B-2354 on dry food processing surface 提高干燥食品加工表面粪肠球菌NRRL B-2354的过热蒸汽灭活效果的抑菌雾预处理
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-16 DOI: 10.1016/j.fm.2025.104956
Shruthy Seshadrinathan , V.M. Balasubramaniam , Abigail B. Snyder
Superheated steam (SHS) is an emerging sanitation technology for dry food processing environments. This study investigates the efficacy of antimicrobial pretreatments in conjunction with SHS to inactivate microorganisms on stainless steel surfaces. Stainless steel coupons were inoculated with Enterococcus faecium (11.1 ± 0.4 log CFU/cm2), equilibrated to a water activity of 0.2 (aw), and subjected to various antimicrobial pretreatments prior to SHS exposure. This includes soaking for 10 or 20 s in sterile water, 70 % ethanol, 0.05 % peracetic acid (mist applied for 5 s), or acidified oil emulsion (100 μL). SHS experiments were conducted using both bench-scale (100 % steam content) and pilot-scale equipment (5 % steam, 95 % hot air). The nozzle-to-surface distance was maintained at 3 cm. All experiments were performed in triplicate, and surviving microorganisms were enumerated using plate counts (detection limit: 0.2 log CFU/cm2). Antimicrobial pretreatments alone resulted in microbial reductions of <2.0 ± 0.5 log CFU/cm2. SHS treatment using the bench-scale system achieved >6.4 ± 0.3 log CFU/cm2 reduction regardless of pretreatment. Pilot-scale SHS treatment (with or without antimicrobials) achieved lower reductions (<2.8 ± 0.2 log CFU/cm2, p < 0.05) possibly due to lower steam content. Increasing the treatment intensity (195 °C for 30 s) resulted moderate improvement in microbial inactivation (3.3 ± 0.6 log CFU/cm2). This study demonstrates that antimicrobial pretreatments can enhance the efficacy of SHS sanitation and highlights the importance of steam content in the treatment environment.
过热蒸汽(SHS)是一种新兴的干燥食品加工环境卫生技术。本研究探讨了抗菌预处理联合SHS灭活不锈钢表面微生物的效果。不锈钢板接种粪肠球菌(11.1±0.4 log CFU/cm2),平衡水活度为0.2 (aw),并在暴露于SHS之前进行各种抗菌预处理。这包括在无菌水、70%乙醇、0.05%过氧乙酸(雾化5秒)或酸化油乳(100 μL)中浸泡10或20秒。SHS实验采用实验规模(100%蒸汽含量)和中试规模设备(5%蒸汽,95%热空气)进行。喷嘴到表面的距离保持在3cm。所有实验一式三次,用平板计数法对存活微生物进行计数(检出限:0.2 log CFU/cm2)。单独的抗菌预处理导致微生物减少了2.0±0.5 log CFU/cm2。无论进行何种预处理,使用实验规模系统的SHS处理均实现了>;6.4±0.3 log CFU/cm2的降低。中试规模的SHS处理(使用或不使用抗菌剂)实现了较低的降低(<2.8±0.2 log CFU/cm2, p < 0.05),可能是由于蒸汽含量较低。增加处理强度(195°C 30 s)可适度改善微生物失活(3.3±0.6 log CFU/cm2)。本研究表明,抗菌预处理可以提高SHS卫生效果,并突出了处理环境中蒸汽含量的重要性。
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引用次数: 0
Deciphering the different saccharide metabolism patterns of unconventional interspecies brewery isolates 破译非常规种间啤酒厂分离株的不同糖代谢模式
IF 4.6 1区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-14 DOI: 10.1016/j.fm.2025.104954
Yu Guan , Qianyao Hou , Chunfeng Liu , Jinjing Wang , Qi Li
The fermentation performance of yeasts is pivotal in very high gravity (VHG) lager beer brewing, particularly in terms of their ability to consume maltose and maltotriose. In this study, we collected two unconventional interspecies brewery isolates used in lager beer brewing, which exhibit different saccharide metabolism patterns. A hybrid of Saccharomyces cerevisiae and Saccharomyces kudriavzevii had a higher affinity for both glucose and maltotriose, while another hybrid of S. cerevisiae, Saccharomyces eubayanus, and Saccharomyces uvarum could rapidly consume more maltose. Transcriptome and comparative genomics were analyzed based on their fermentation performance during VHG brewing. We found that mutated Sk-IMAx could be helpful for maltotriose usage, while Sk-MIG2 could repress maltose consumption. Moreover, their different energy metabolism distribution also influenced the saccharide pattern greatly. The combination of heterosis from both Saccharomyces hybrids might shed light on innovation in VHG lager beer brewing and other diverse fermentation industries. Furthermore, a better understanding of cellular and genetic mechanisms could help us explore other possibilities in hybrids between Saccharomyces siblings.
酵母的发酵性能在非常高重力(VHG)啤酒酿造中是关键的,特别是在它们消耗麦芽糖和麦芽糖的能力方面。在这项研究中,我们收集了两个非传统的种间啤酒厂分离株,用于酿造拉格啤酒,它们表现出不同的糖代谢模式。酿酒酵母(Saccharomyces cerevisiae)和kudriavzevii的杂交菌株对葡萄糖和麦芽糖的亲和力更高,而酿酒酵母(Saccharomyces eubayanus)和酿酒酵母(Saccharomyces uvarum)的杂交菌株对麦芽糖的消耗更快。利用转录组学和比较基因组学分析了它们在VHG酿造过程中的发酵性能。我们发现突变的Sk-IMAx可能有助于麦芽糖的使用,而Sk-MIG2可能抑制麦芽糖的消耗。此外,它们不同的能量代谢分布也对糖类格局产生了很大的影响。两种酵母杂种优势的结合可能为VHG啤酒酿造和其他多种发酵行业的创新提供启示。此外,更好地了解细胞和遗传机制可以帮助我们探索酵母菌兄弟姐妹之间杂交的其他可能性。
{"title":"Deciphering the different saccharide metabolism patterns of unconventional interspecies brewery isolates","authors":"Yu Guan ,&nbsp;Qianyao Hou ,&nbsp;Chunfeng Liu ,&nbsp;Jinjing Wang ,&nbsp;Qi Li","doi":"10.1016/j.fm.2025.104954","DOIUrl":"10.1016/j.fm.2025.104954","url":null,"abstract":"<div><div>The fermentation performance of yeasts is pivotal in very high gravity (VHG) lager beer brewing, particularly in terms of their ability to consume maltose and maltotriose. In this study, we collected two unconventional interspecies brewery isolates used in lager beer brewing, which exhibit different saccharide metabolism patterns. A hybrid of <em>Saccharomyces cerevisiae</em> and <em>Saccharomyces kudriavzevii</em> had a higher affinity for both glucose and maltotriose, while another hybrid of <em>S. cerevisiae</em>, <em>Saccharomyces eubayanus,</em> and <em>Saccharomyces uvarum</em> could rapidly consume more maltose. Transcriptome and comparative genomics were analyzed based on their fermentation performance during VHG brewing. We found that mutated Sk-<em>IMAx</em> could be helpful for maltotriose usage, while Sk-<em>MIG2</em> could repress maltose consumption. Moreover, their different energy metabolism distribution also influenced the saccharide pattern greatly. The combination of heterosis from both <em>Saccharomyces</em> hybrids might shed light on innovation in VHG lager beer brewing and other diverse fermentation industries. Furthermore, a better understanding of cellular and genetic mechanisms could help us explore other possibilities in hybrids between <em>Saccharomyces</em> siblings.</div></div>","PeriodicalId":12399,"journal":{"name":"Food microbiology","volume":"135 ","pages":"Article 104954"},"PeriodicalIF":4.6,"publicationDate":"2025-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145323556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Food microbiology
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