Soil salinisation is an important abiotic stress faced in grape cultivating, leading to weakened plant vigour and reduced fruit quality. Melatonin as a novel hormone has shown positive exogenous application value. Therefore, this study used wine grape (Vitis vinifera ) 'Pinot Noir' as a test material to investigate the changes of foliar spraying with different concentrations of melatonin on the physiology and fruit quality of wine grapes in a field under simulated salt stress (200mmolL-1 NaCl). The results showed that foliar spraying of melatonin significantly increased the intercellular CO2 concentration, maximum photochemical quantum yield of PSII, relative chlorophyll and ascorbic acid content of the leaves, as well as the single spike weight, 100-grain weight, transverse and longitudinal diameters, malic acid, α-amino nitrogen and ammonia content of fruits, and decreased the initial fluorescence value of leaves, ascorbate peroxidase activity, glutathione content, fruit transverse to longitudinal ratio and tartaric acid content of plants under salt stress. Results of the comprehensive evaluation of the affiliation function indicated that 100μmolL-1 melatonin treatment had the best effect on reducing salt stress in grapes. In summary, melatonin application could enhance the salt tolerance of grapes by improving the photosynthetic capacity of grape plants under salt stress and promoting fruit development and quality formation, and these results provide new insights into the involvement of melatonin in the improvement of salt tolerance in crop, as well as some theoretical basis for the development and industrialisation of stress-resistant cultivation techniques for wine grapes.
土壤盐碱化是葡萄种植过程中面临的重要非生物胁迫,会导致植株活力减弱、果实质量下降。褪黑激素作为一种新型激素,已显示出积极的外源应用价值。因此,本研究以酿酒葡萄(Vitis vinifera)'Pinot Noir'为试验材料,研究在模拟盐胁迫(200mmolL-1 NaCl)条件下,叶面喷施不同浓度的褪黑激素对酿酒葡萄生理机能和果实品质的影响。结果表明,叶面喷施褪黑素能显著提高细胞间 CO2 浓度、PSII 最大光化学量子产率、叶片相对叶绿素和抗坏血酸含量,以及单穗重、百粒重、横径和纵径、果实的横径和纵径、苹果酸、α-氨基氮和氨含量,并降低盐胁迫下植株的叶片初始荧光值、抗坏血酸过氧化物酶活性、谷胱甘肽含量、果实横纵比和酒石酸含量。隶属功能的综合评价结果表明,100μmolL-1褪黑激素处理对减轻葡萄的盐胁迫效果最好。综上所述,褪黑激素的应用可通过提高盐胁迫下葡萄植株的光合能力、促进果实发育和品质形成来增强葡萄的耐盐性,这些结果为褪黑激素参与作物耐盐性的提高提供了新的认识,也为酿酒葡萄抗胁迫栽培技术的开发和产业化提供了一定的理论依据。
{"title":"Impact of exogenous melatonin foliar application on physiology and fruit quality of wine grapes (<i>Vitis vinifera</i>) under salt stress.","authors":"Yuanyuan Li, Congcong Zhang, Xu Lu, Haokai Yan, Guojie Nai, Meishuang Gong, Ying Lai, Zhihui Pu, Li Wei, Shaoying Ma, Sheng Li","doi":"10.1071/FP24019","DOIUrl":"10.1071/FP24019","url":null,"abstract":"<p><p>Soil salinisation is an important abiotic stress faced in grape cultivating, leading to weakened plant vigour and reduced fruit quality. Melatonin as a novel hormone has shown positive exogenous application value. Therefore, this study used wine grape (Vitis vinifera ) 'Pinot Noir' as a test material to investigate the changes of foliar spraying with different concentrations of melatonin on the physiology and fruit quality of wine grapes in a field under simulated salt stress (200mmolL-1 NaCl). The results showed that foliar spraying of melatonin significantly increased the intercellular CO2 concentration, maximum photochemical quantum yield of PSII, relative chlorophyll and ascorbic acid content of the leaves, as well as the single spike weight, 100-grain weight, transverse and longitudinal diameters, malic acid, α-amino nitrogen and ammonia content of fruits, and decreased the initial fluorescence value of leaves, ascorbate peroxidase activity, glutathione content, fruit transverse to longitudinal ratio and tartaric acid content of plants under salt stress. Results of the comprehensive evaluation of the affiliation function indicated that 100μmolL-1 melatonin treatment had the best effect on reducing salt stress in grapes. In summary, melatonin application could enhance the salt tolerance of grapes by improving the photosynthetic capacity of grape plants under salt stress and promoting fruit development and quality formation, and these results provide new insights into the involvement of melatonin in the improvement of salt tolerance in crop, as well as some theoretical basis for the development and industrialisation of stress-resistant cultivation techniques for wine grapes.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"51 ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140921464","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Valerio Cirillo, Marco Esposito, Matteo Lentini, Claudio Russo, Nausicaa Pollaro, Albino Maggio
The two stresses of weed competition and salt salinity lead to crop yield losses and decline in the productivity of agricultural land. These constraints threaten the future of food production because weeds are more salt stress tolerant than most crops. Climate change will lead to an increase of soil salinity worldwide, and possibly exacerbate the competition between weeds and crops. This aspect has been scarcely investigated in the context of weed-crop competition. Therefore, we conducted a field experiment on green beans (Phaseolus vulgaris ) to investigate the combined impact of weed competition and salt stress on key morpho-physiological traits, and crop yield. We demonstrated that soil salinity shifted weed composition toward salt tolerant weed species (Portulaca oleracea and Cynodon dactylon ), while it reduced the presence of lower tolerance species. Weed competition activated adaptation responses in green bean such as reduced leaf mass per area and biomass allocation to the stem, unchanged stomatal density and instantaneous water use efficiency, which diverge from those that are typically observed as a consequence of salt stress. The morpho-physiological modifications caused by weeds is attributed to the alterations of light intensity and/or quality, further confirming the pivotal role of the light in crop response to weeds. We concluded that higher yield loss caused by combined salt stress and weed competition is due to impaired morpho-physiological responses, which highlights the negative interaction between salt stress and weed competition. This phenomenon will likely be more frequent in the future, and potentially reduce the efficacy of current weed control methods.
{"title":"Morpho-physiological adaptations to weed competition impair green bean (<i>Phaseolus vulgaris</i>) ability to overcome moderate salt stress.","authors":"Valerio Cirillo, Marco Esposito, Matteo Lentini, Claudio Russo, Nausicaa Pollaro, Albino Maggio","doi":"10.1071/FP23202","DOIUrl":"https://doi.org/10.1071/FP23202","url":null,"abstract":"<p><p>The two stresses of weed competition and salt salinity lead to crop yield losses and decline in the productivity of agricultural land. These constraints threaten the future of food production because weeds are more salt stress tolerant than most crops. Climate change will lead to an increase of soil salinity worldwide, and possibly exacerbate the competition between weeds and crops. This aspect has been scarcely investigated in the context of weed-crop competition. Therefore, we conducted a field experiment on green beans (Phaseolus vulgaris ) to investigate the combined impact of weed competition and salt stress on key morpho-physiological traits, and crop yield. We demonstrated that soil salinity shifted weed composition toward salt tolerant weed species (Portulaca oleracea and Cynodon dactylon ), while it reduced the presence of lower tolerance species. Weed competition activated adaptation responses in green bean such as reduced leaf mass per area and biomass allocation to the stem, unchanged stomatal density and instantaneous water use efficiency, which diverge from those that are typically observed as a consequence of salt stress. The morpho-physiological modifications caused by weeds is attributed to the alterations of light intensity and/or quality, further confirming the pivotal role of the light in crop response to weeds. We concluded that higher yield loss caused by combined salt stress and weed competition is due to impaired morpho-physiological responses, which highlights the negative interaction between salt stress and weed competition. This phenomenon will likely be more frequent in the future, and potentially reduce the efficacy of current weed control methods.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"51 ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141070707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Roshan Zameer, Khairiah Mubarak Alwutayd, Dikhnah Alshehri, Muhammad Salman Mubarik, Cheng Li, Chengde Yu, Zhifang Li
The investigation into cysteine-rich receptor-like kinases (CRLKs) holds pivotal significance as these conserved, upstream signalling molecules intricately regulate fundamental biological processes such as plant growth, development and stress adaptation. This study undertakes a comprehensive characterisation of CRLKs in Solanum tuberosum (potato), a staple food crop of immense economic importance. Employing comparative genomics and evolutionary analyses, we identified 10 distinct CRLK genes in potato. Further categorisation into three major groups based on sequence similarity was performed. Each CRLK member in potato was systematically named according to its chromosomal position. Multiple sequence alignment and phylogenetic analyses unveiled conserved gene structures and motifs within the same groups. The genomic distribution of CRLKs was observed across Chromosomes 2-5, 8 and 12. Gene duplication analysis highlighted a noteworthy trend, with most gene pairs exhibiting a Ka/Ks ratio greater than one, indicating positive selection of StCRLKs in potato. Salt and drought stresses significantly impacted peroxidase and catalase activities in potato seedlings. The presence of diverse cis -regulatory elements, including hormone-responsive elements, underscored their involvement in myriad biotic and abiotic stress responses. Interestingly, interactions between the phytohormone auxin and CRLK proteins unveiled a potential auxin-mediated regulatory mechanism. A holistic approach combining transcriptomics and quantitative PCR validation identified StCRLK9 as a potential candidate involved in plant response to heat, salt and drought stresses. This study lays a robust foundation for future research on the functional roles of the CRLK gene family in potatoes, offering valuable insights into their diverse regulatory mechanisms and potential applications in stress management.
{"title":"Identification of cysteine-rich receptor-like kinase gene family in potato: revealed <i>StCRLK9</i> in response to heat, salt and drought stresses.","authors":"Roshan Zameer, Khairiah Mubarak Alwutayd, Dikhnah Alshehri, Muhammad Salman Mubarik, Cheng Li, Chengde Yu, Zhifang Li","doi":"10.1071/FP23320","DOIUrl":"10.1071/FP23320","url":null,"abstract":"<p><p>The investigation into cysteine-rich receptor-like kinases (CRLKs) holds pivotal significance as these conserved, upstream signalling molecules intricately regulate fundamental biological processes such as plant growth, development and stress adaptation. This study undertakes a comprehensive characterisation of CRLKs in Solanum tuberosum (potato), a staple food crop of immense economic importance. Employing comparative genomics and evolutionary analyses, we identified 10 distinct CRLK genes in potato. Further categorisation into three major groups based on sequence similarity was performed. Each CRLK member in potato was systematically named according to its chromosomal position. Multiple sequence alignment and phylogenetic analyses unveiled conserved gene structures and motifs within the same groups. The genomic distribution of CRLKs was observed across Chromosomes 2-5, 8 and 12. Gene duplication analysis highlighted a noteworthy trend, with most gene pairs exhibiting a Ka/Ks ratio greater than one, indicating positive selection of StCRLKs in potato. Salt and drought stresses significantly impacted peroxidase and catalase activities in potato seedlings. The presence of diverse cis -regulatory elements, including hormone-responsive elements, underscored their involvement in myriad biotic and abiotic stress responses. Interestingly, interactions between the phytohormone auxin and CRLK proteins unveiled a potential auxin-mediated regulatory mechanism. A holistic approach combining transcriptomics and quantitative PCR validation identified StCRLK9 as a potential candidate involved in plant response to heat, salt and drought stresses. This study lays a robust foundation for future research on the functional roles of the CRLK gene family in potatoes, offering valuable insights into their diverse regulatory mechanisms and potential applications in stress management.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"51 ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140897992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cassava (Manihot esculenta Crantz), an important tropical crop, is affected by extreme climatic events, including rising CO2 levels. We evaluated the short-term effect of elevated CO2 concentration (ECO2 ) (600, 800 and 1000ppm) on the photosynthetic efficiency of 14 cassava genotypes. ECO2 significantly altered gaseous exchange parameters (net photosynthetic rate (P n ), stomatal conductance (g s ), intercellular CO2 (C i ) and transpiration (E )) in cassava leaves. There were significant but varying interactive effects between ECO2 and varieties on these physiological characteristics. ECO2 at 600 and 800ppm increased the P n rate in the range of 13-24% in comparison to 400ppm (ambient CO2 ), followed by acclimation at the highest concentration of 1000ppm. A similar trend was observed in g s and E . Conversely, C i increased significantly and linearly across increasing CO2 concentration. Along with C i , a steady increase in water use efficiency [WUEintrinsic (P n /g s ) and WUEinstantaneous (P n /E )] across various CO2 concentrations corresponded with the central role of restricted stomatal activity, a common response under ECO2 . Furthermore, P n had a significant quadratic relationship with the ECO2 (R 2 =0.489) and a significant and linear relationship with C i (R 2 =0.227). Relative humidity and vapour pressure deficit during the time of measurements remained at 70-85% and ~0.9-1.31kPa, respectively, at 26±2°C leaf temperature. Notably, not a single variety exhibited constant performance for any of the parameters across CO2 concentrations. Our results indicate that the potential photosynthesis can be increased up to 800ppm cassava varieties with high sink capacity can be cultivated under protected cultivation to attain higher productivity.
木薯(Manihot esculenta Crantz)是一种重要的热带作物,受到极端气候事件的影响,包括二氧化碳水平的上升。我们评估了二氧化碳浓度升高(ECO2)(600、800 和 1000ppm)对 14 种木薯基因型光合效率的短期影响。ECO2 明显改变了木薯叶片的气体交换参数(净光合速率(P n )、气孔导度(g s )、细胞间 CO2(C i )和蒸腾(E ))。ECO2 与品种之间对这些生理特性的交互作用很明显,但存在差异。与 400ppm(环境 CO2)相比,600 和 800ppm 的 ECO2 使 P n 的速率增加了 13-24% ,随后在最高浓度 1000ppm 下出现了适应。在 g s 和 E 中也观察到类似的趋势。相反,C i 在二氧化碳浓度增加时呈线性大幅增加。随着 C i 的增加,水分利用效率[WUEintrinsic(P n /g s)和 WUEinstantaneous(P n /E )]在不同 CO2 浓度下稳步上升,这与限制气孔活动的核心作用相符,这也是 ECO2 条件下的常见反应。此外,P n 与 ECO2 存在显著的二次关系(R 2 =0.489),与 C i 存在显著的线性关系(R 2 =0.227)。叶温为 26±2°C 时,测量期间的相对湿度和蒸气压差分别保持在 70%-85% 和 ~0.9-1.31kPa 之间。值得注意的是,在不同二氧化碳浓度下,没有一个品种的任何参数表现出相同的性能。我们的研究结果表明,在保护性栽培条件下,具有高吸收能力的木薯品种的潜在光合作用可提高到 800ppm 以达到更高的生产率。
{"title":"Evaluation of potential increase in photosynthetic efficiency of cassava (<i>Manihot esculenta</i> Crantz) plants exposed to elevated carbon dioxide.","authors":"V Ravi, Saravanan Raju, Sanket J More","doi":"10.1071/FP23254","DOIUrl":"10.1071/FP23254","url":null,"abstract":"<p><p>Cassava (Manihot esculenta Crantz), an important tropical crop, is affected by extreme climatic events, including rising CO2 levels. We evaluated the short-term effect of elevated CO2 concentration (ECO2 ) (600, 800 and 1000ppm) on the photosynthetic efficiency of 14 cassava genotypes. ECO2 significantly altered gaseous exchange parameters (net photosynthetic rate (P n ), stomatal conductance (g s ), intercellular CO2 (C i ) and transpiration (E )) in cassava leaves. There were significant but varying interactive effects between ECO2 and varieties on these physiological characteristics. ECO2 at 600 and 800ppm increased the P n rate in the range of 13-24% in comparison to 400ppm (ambient CO2 ), followed by acclimation at the highest concentration of 1000ppm. A similar trend was observed in g s and E . Conversely, C i increased significantly and linearly across increasing CO2 concentration. Along with C i , a steady increase in water use efficiency [WUEintrinsic (P n /g s ) and WUEinstantaneous (P n /E )] across various CO2 concentrations corresponded with the central role of restricted stomatal activity, a common response under ECO2 . Furthermore, P n had a significant quadratic relationship with the ECO2 (R 2 =0.489) and a significant and linear relationship with C i (R 2 =0.227). Relative humidity and vapour pressure deficit during the time of measurements remained at 70-85% and ~0.9-1.31kPa, respectively, at 26±2°C leaf temperature. Notably, not a single variety exhibited constant performance for any of the parameters across CO2 concentrations. Our results indicate that the potential photosynthesis can be increased up to 800ppm cassava varieties with high sink capacity can be cultivated under protected cultivation to attain higher productivity.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"51 ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140921463","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jacques-Joseph Boucher, Hilary S. Ireland, Ruiling Wang, Karine M. David, Robert J. Schaffer
Herkogamy is the spatial separation of anthers and stigmas within complete flowers, and is a key floral trait that promotes outcrossing in many angiosperms. The degree of separation between pollen-producing anthers and receptive stigmas has been shown to influence rates of self-pollination amongst plants, with a reduction in herkogamy increasing rates of successful selfing in self-compatible species. Self-pollination is becoming a critical issue in horticultural crops grown in environments where biotic pollinators are limited, absent, or difficult to utilise. In these cases, poor pollination results in reduced yield and misshapen fruit. Whilst there is a growing body of work elucidating the genetic basis of floral organ development, the genetic and environmental control points regulating herkogamy are poorly understood. A better understanding of the developmental and regulatory pathways involved in establishing varying degrees of herkogamy is needed to provide insights into the production of flowers more adept at selfing to produce consistent, high-quality fruit. This review presents our current understanding of herkogamy from a genetics and hormonal perspective.
{"title":"The genetic control of herkogamy","authors":"Jacques-Joseph Boucher, Hilary S. Ireland, Ruiling Wang, Karine M. David, Robert J. Schaffer","doi":"10.1071/fp23315","DOIUrl":"https://doi.org/10.1071/fp23315","url":null,"abstract":"<p>Herkogamy is the spatial separation of anthers and stigmas within complete flowers, and is a key floral trait that promotes outcrossing in many angiosperms. The degree of separation between pollen-producing anthers and receptive stigmas has been shown to influence rates of self-pollination amongst plants, with a reduction in herkogamy increasing rates of successful selfing in self-compatible species. Self-pollination is becoming a critical issue in horticultural crops grown in environments where biotic pollinators are limited, absent, or difficult to utilise. In these cases, poor pollination results in reduced yield and misshapen fruit. Whilst there is a growing body of work elucidating the genetic basis of floral organ development, the genetic and environmental control points regulating herkogamy are poorly understood. A better understanding of the developmental and regulatory pathways involved in establishing varying degrees of herkogamy is needed to provide insights into the production of flowers more adept at selfing to produce consistent, high-quality fruit. This review presents our current understanding of herkogamy from a genetics and hormonal perspective.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"48 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140840563","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Fawad Ali, Mian A. R. Arif, Arif Ali, Muhammad A. Nadeem, Emre Aksoy, Allah Bakhsh, Shahid U. Khan, Cemal Kurt, Dilek Tekdal, Muhammad K. Ilyas, Amjad Hameed, Yong S. Chung, Faheem S. Baloch
Effective identification and usage of genetic variation are prerequisites for developing nutrient-efficient cultivars. A collection of 94 safflower (Carthamus tinctorius) genotypes (G) was investigated for important morphological and photosynthetic traits at four nitrogen (N) treatments. We found significant variation for all the studied traits except chlorophyll b (chl b) among safflower genotypes, nitrogen treatments and G × N interaction. The examined traits showed a 2.82–50.00% increase in response to N application. Biological yield (BY) reflected a significantly positive correlation with fresh shoot weight (FSW), root length (RL), fresh root weight (FRW) and number of leaves (NOL), while a significantly positive correlation was also observed among carotenoids (C), chlorophyll a (chl a), chl b and total chlorophyll content (CT) under all treatments. Superior genotypes with respect to plant height (PH), FSW, NOL, RL, FRW and BY were clustered into Group 3, while genotypes with better mean performance regarding chl a, chl b C and CT were clustered into Group 2 as observed in principal component analysis. The identified eight best-performing genotypes could be useful to develop improved nitrogen efficient cultivars. Genome-wide association analysis resulted in 32 marker-trait associations (MTAs) under four treatments. Markers namely DArT-45481731, DArT-17812864, DArT-15670279 and DArT-45482737 were found consistent. Protein–protein interaction networks of loci associated with MTAs were related to fatty acid and branched-chain amino acid metabolism and histone modifications.
有效识别和利用遗传变异是开发营养高效栽培品种的先决条件。我们研究了 94 个红花(Carthamus tinctorius)基因型(G)在四种氮(N)处理下的重要形态和光合性状。我们发现,除叶绿素 b(chl b)外,所研究的所有性状在红花基因型、氮处理和 G × N 交互作用之间都存在明显差异。所研究的性状对施氮的反应增加了 2.82-50.00%。生物产量(BY)与鲜枝重(FSW)、根长(RL)、鲜根重(FRW)和叶片数(NOL)呈显著正相关,而在所有处理下,类胡萝卜素(C)、叶绿素 a(chl a)、叶绿素 b 和总叶绿素含量(CT)也呈显著正相关。根据主成分分析,在株高(PH)、FSW、NOL、RL、FRW 和 BY 方面表现优异的基因型被归入第 3 组,而在叶绿素 a、叶绿素 b C 和 CT 方面平均表现较好的基因型被归入第 2 组。确定的 8 个表现最好的基因型可用于改良氮素效率高的栽培品种。全基因组关联分析在四个处理下产生了 32 个标记-性状关联(MTAs)。发现DArT-45481731、DArT-17812864、DArT-15670279和DArT-45482737等标记具有一致性。与 MTAs 相关的基因座的蛋白质-蛋白质相互作用网络与脂肪酸和支链氨基酸代谢以及组蛋白修饰有关。
{"title":"Genome-wide association studies identifies genetic loci related to fatty acid and branched-chain amino acid metabolism and histone modifications under varying nitrogen treatments in safflower (Carthamus tinctorius)","authors":"Fawad Ali, Mian A. R. Arif, Arif Ali, Muhammad A. Nadeem, Emre Aksoy, Allah Bakhsh, Shahid U. Khan, Cemal Kurt, Dilek Tekdal, Muhammad K. Ilyas, Amjad Hameed, Yong S. Chung, Faheem S. Baloch","doi":"10.1071/fp23310","DOIUrl":"https://doi.org/10.1071/fp23310","url":null,"abstract":"<p>Effective identification and usage of genetic variation are prerequisites for developing nutrient-efficient cultivars. A collection of 94 safflower (<i>Carthamus tinctorius</i>) genotypes (G) was investigated for important morphological and photosynthetic traits at four nitrogen (N) treatments. We found significant variation for all the studied traits except chlorophyll <i>b</i> (chl <i>b</i>) among safflower genotypes, nitrogen treatments and G × N interaction. The examined traits showed a 2.82–50.00% increase in response to N application. Biological yield (BY) reflected a significantly positive correlation with fresh shoot weight (FSW), root length (RL), fresh root weight (FRW) and number of leaves (NOL), while a significantly positive correlation was also observed among carotenoids (C), chlorophyll <i>a</i> (chl <i>a</i>), chl <i>b</i> and total chlorophyll content (CT) under all treatments. Superior genotypes with respect to plant height (PH), FSW, NOL, RL, FRW and BY were clustered into Group 3, while genotypes with better mean performance regarding chl <i>a</i>, chl <i>b</i> C and CT were clustered into Group 2 as observed in principal component analysis. The identified eight best-performing genotypes could be useful to develop improved nitrogen efficient cultivars. Genome-wide association analysis resulted in 32 marker-trait associations (MTAs) under four treatments. Markers namely <i>DArT-45481731</i>, <i>DArT-17812864</i>, <i>DArT-15670279</i> and <i>DArT-45482737</i> were found consistent. Protein–protein interaction networks of loci associated with MTAs were related to fatty acid and branched-chain amino acid metabolism and histone modifications.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"161 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140840652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aiman Hina, Muhammad Khuram Razzaq, Asim Abbasi, Muhamad Basit Shehzad, Muhammad Arshad, Tayyaba Sanaullah, Kamran Arshad, Ghulam Raza, Hayssam M. Ali, Faisal Hayat, Naeem Akhtar, Nader R. Abdelsalam
Soybean (Glycine max) is an important oilseed, protein and biodiesel crop. It faces significant threats from bacterial, fungal and viral pathogens, which cause economic losses and jeopardises global food security. In this article, we explore the relationship between soybeans and these pathogens, focusing on the molecular responses that are crucial for soybeans defence mechanisms. Molecular responses involve small RNAs and specific genes, including resistance (R) genes that are pivotal in triggering immune responses. Functional genomics, which makes use of cutting-edge technologies, such as CRISPR Cas9 gene editing, allows us to identify genes that provide insights into the defence mechanisms of soybeans with the focus on using genomics to understand the mechanisms involved in host pathogen interactions and ultimately improve the resilience of soybeans. Genes like GmKR3 and GmVQ58 have demonstrated resistance against soybean mosaic virus and common cutworm, respectively. Genetic studies have identified quantitative trait loci (QTLs) including those linked with soybean cyst nematode, root-knot nematode and Phytophthora root and stem rot resistance. Additionally, resistance against Asian soybean rust and soybean cyst nematode involves specific genes and their variations in terms of different copy numbers. To address the challenges posed by evolving pathogens and meet the demands of a growing population, accelerated soybean breeding efforts leveraging functional genomics are imperative. Targeted breeding strategies based on a deeper understanding of soybean gene function and regulation will enhance disease resistance, ensuring sustainable agriculture and global food security. Collaborative research and continued technological advancements are crucial for securing a resilient and productive agricultural future.
{"title":"Genomic blueprints of soybean (Glycine max) pathogen resistance: revealing the key genes for sustainable agriculture","authors":"Aiman Hina, Muhammad Khuram Razzaq, Asim Abbasi, Muhamad Basit Shehzad, Muhammad Arshad, Tayyaba Sanaullah, Kamran Arshad, Ghulam Raza, Hayssam M. Ali, Faisal Hayat, Naeem Akhtar, Nader R. Abdelsalam","doi":"10.1071/fp23295","DOIUrl":"https://doi.org/10.1071/fp23295","url":null,"abstract":"<p>Soybean (<i>Glycine max</i>) is an important oilseed, protein and biodiesel crop. It faces significant threats from bacterial, fungal and viral pathogens, which cause economic losses and jeopardises global food security. In this article, we explore the relationship between soybeans and these pathogens, focusing on the molecular responses that are crucial for soybeans defence mechanisms. Molecular responses involve small RNAs and specific genes, including resistance (R) genes that are pivotal in triggering immune responses. Functional genomics, which makes use of cutting-edge technologies, such as CRISPR Cas9 gene editing, allows us to identify genes that provide insights into the defence mechanisms of soybeans with the focus on using genomics to understand the mechanisms involved in host pathogen interactions and ultimately improve the resilience of soybeans. Genes like <i>GmKR3</i> and <i>GmVQ58</i> have demonstrated resistance against soybean mosaic virus and common cutworm, respectively. Genetic studies have identified quantitative trait loci (QTLs) including those linked with soybean cyst nematode, root-knot nematode and <i>Phytophthora</i> root and stem rot resistance. Additionally, resistance against Asian soybean rust and soybean cyst nematode involves specific genes and their variations in terms of different copy numbers. To address the challenges posed by evolving pathogens and meet the demands of a growing population, accelerated soybean breeding efforts leveraging functional genomics are imperative. Targeted breeding strategies based on a deeper understanding of soybean gene function and regulation will enhance disease resistance, ensuring sustainable agriculture and global food security. Collaborative research and continued technological advancements are crucial for securing a resilient and productive agricultural future.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"91 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140840568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chlorophyll a fluorescence parameters related to PSII photochemistry, photoprotection and photoinhibition were investigated in four C3 plant species growing in their natural habitat: Prosopis juliflora; Abutilon indicum; Salvadora persica; and Phragmites karka. This study compared the light reaction responses of P. juliflora, an invasive species, with three native co-existing species, which adapt to varying water deficit and high salt stress. Chlorophyll a fluorescence quenching analyses revealed that P. juliflora had the highest photochemical quantum efficiency and yield, regulated by higher fraction of open reaction centres and reduced photoprotective energy dissipation without compromising the integrity of photosynthetic apparatus due to photoinhibition. Moreover, the elevated values of parameters obtained through polyphasic chlorophyll a fluorescence induction kinetics, which characterise the photochemistry of PSII and electron transport, highlighted the superior performance index of energy conservation in the transition from excitation to the reduction of intersystem electron carriers for P. juliflora compared to other species. Enhanced pigment contents and their stoichiometry in P. juliflora apparently contributed to upregulating fluxes and yields of energy absorbance, trapping and transport. This enhanced photochemistry, along with reduced non-photochemical processes, could explain the proclivity for invasion advantage in P. juliflora across diverse stress conditions.
研究了在自然栖息地生长的四种 C3 植物中与 PSII 光化学、光保护和光抑制有关的叶绿素 a 荧光参数:这四种 C3 植物分别是:糙叶榕、苘麻、莎尔瓦多拉(Salvadora persica)和葭(Phragmites karka)。本研究比较了入侵物种 P. juliflora 和三个共存的本地物种的光反应,这三个物种都能适应不同的缺水和高盐胁迫。叶绿素 a 荧光淬灭分析表明,鹅掌楸具有最高的光化学量子效率和产量,其调节机制是开放反应中心的比例较高,光保护能量耗散减少,但不会因光抑制而损害光合装置的完整性。此外,通过多相叶绿素 a 荧光诱导动力学获得的参数值较高,这些参数是 PSII 光化学和电子传递的特征,突出表明与其他物种相比,茱莉花在系统间电子载体从激发到还原的过渡过程中,能量守恒性能指标更优。茱莉花色素含量及其化学计量的提高显然有助于提高能量吸收、捕获和传输的通量和产量。光化学作用的增强以及非光化学过程的减少,可以解释鹅掌楸在不同胁迫条件下的入侵优势。
{"title":"Enhanced photochemical efficiency of PSII in Prosopis juliflora suggests contribution to invasion advantage over native C 3 xero-halophytes under salt stress","authors":"Ahmad Zia, Salman Gulzar, Alexander V. Ruban","doi":"10.1071/fp23272","DOIUrl":"https://doi.org/10.1071/fp23272","url":null,"abstract":"<p>Chlorophyll <i>a</i> fluorescence parameters related to PSII photochemistry, photoprotection and photoinhibition were investigated in four C<sub>3</sub> plant species growing in their natural habitat: <i>Prosopis juliflora</i>; <i>Abutilon indicum</i>; <i>Salvadora persica</i>; and <i>Phragmites karka</i>. This study compared the light reaction responses of <i>P. juliflora</i>, an invasive species, with three native co-existing species, which adapt to varying water deficit and high salt stress. Chlorophyll <i>a</i> fluorescence quenching analyses revealed that <i>P. juliflora</i> had the highest photochemical quantum efficiency and yield, regulated by higher fraction of open reaction centres and reduced photoprotective energy dissipation without compromising the integrity of photosynthetic apparatus due to photoinhibition. Moreover, the elevated values of parameters obtained through polyphasic chlorophyll <i>a</i> fluorescence induction kinetics, which characterise the photochemistry of PSII and electron transport, highlighted the superior performance index of energy conservation in the transition from excitation to the reduction of intersystem electron carriers for <i>P. juliflora</i> compared to other species. Enhanced pigment contents and their stoichiometry in <i>P. juliflora</i> apparently contributed to upregulating fluxes and yields of energy absorbance, trapping and transport. This enhanced photochemistry, along with reduced non-photochemical processes, could explain the proclivity for invasion advantage in <i>P. juliflora</i> across diverse stress conditions.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"36 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140840402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lead (Pb) induces oxidative stress in plants, which results in different responses, including the production of antioxidants and changes in the profile of secondary metabolites. In this study, the responses of Scrophularia striata exposed to 250 mg L−1 Pb (NO3)2 in a hydroponic environment were determined. Growth parameters, oxidative and antioxidative responses, redox status, and the concentration of Pb were analysed in roots and shoots. Malondialdehyde and hydrogen peroxide (H2O2) levels in the roots were significantly increased and reached their highest value at 72 h after Pb treatment. Superoxide dismutase, catalase, and peroxidase, as an enzymatic antioxidant system, were responsible for reactive oxygen species scavenging, where their activities were increased in the shoot and root of Pb-treated plants. Enzymatic antioxidant activities were probably not enough to remove a significant H2O2 content in response to Pb treatment. Therefore, other defence responses were activated. The results stated that the flavonoid components of S. striata progressed towards the increase of isoflavone, flavanol, and stilbenoid contents under Pb treatment. In general, S. striata stimulates the enzymatic defence system and activates the non-enzymatic system by modulating the profile of flavonoids toward the production of flavonoids with high antioxidant activity, such as quercetin and myricetin in response to Pb stress.
{"title":"Responses to lead stress in Scrophularia striata: insights into antioxidative defence mechanisms and changes in flavonoids profile","authors":"Reyhaneh Danaeipour, Mohsen Sharifi, Azam Noori","doi":"10.1071/fp23236","DOIUrl":"https://doi.org/10.1071/fp23236","url":null,"abstract":"<p>Lead (Pb) induces oxidative stress in plants, which results in different responses, including the production of antioxidants and changes in the profile of secondary metabolites. In this study, the responses of <i>Scrophularia striata</i> exposed to 250 mg L<sup>−1</sup> Pb (NO<sub>3</sub>)<sub>2</sub> in a hydroponic environment were determined. Growth parameters, oxidative and antioxidative responses, redox status, and the concentration of Pb were analysed in roots and shoots. Malondialdehyde and hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) levels in the roots were significantly increased and reached their highest value at 72 h after Pb treatment. Superoxide dismutase, catalase, and peroxidase, as an enzymatic antioxidant system, were responsible for reactive oxygen species scavenging, where their activities were increased in the shoot and root of Pb-treated plants. Enzymatic antioxidant activities were probably not enough to remove a significant H<sub>2</sub>O<sub>2</sub> content in response to Pb treatment. Therefore, other defence responses were activated. The results stated that the flavonoid components of <i>S. striata</i> progressed towards the increase of isoflavone, flavanol, and stilbenoid contents under Pb treatment. In general, <i>S. striata</i> stimulates the enzymatic defence system and activates the non-enzymatic system by modulating the profile of flavonoids toward the production of flavonoids with high antioxidant activity, such as quercetin and myricetin in response to Pb stress.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"156 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140802268","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Fatima Gulzar, Raza Ahmad, Suk-Yoon Kwan, Zulqurnain Khan, Sulaiman Ali Alharbi, Mohmmad Maroof Shah, Shoaib ur Rehman, Maria Siddique, Mohammad Javed Ansari, Irum Shahzadi, Muhammad Abu Bakar Saddique, Muhmmad Zahid Ishaq, Ummara Waheed
Transgenic Arabidopsis thaliana (ecotype Columbia) was successfully transformed with the gene fructose-1,6-bisphosphatase (FBPase) and named as AtFBPase plants. Transgenic plants exhibited stable transformation, integration and significantly higher expressions for the transformed gene. Morphological evaluation of transgenic plants showed increased plant height (35 cm), number of leaves (25), chlorophyll contents (28%), water use efficiency (increased from 1.5 to 2.6 μmol CO2 μmol−1 H2O) and stomatal conductance (20%), which all resulted in an enhanced photosynthetic rate (2.7 μmol m−2 s−1) compared to wild type plants. This study suggests the vital role of FBPase gene in the modification of regulatory pathways to enhance the photosynthetic rate, which can also be utilised for economic crops in future.
{"title":"Understanding the role of the fructose-1,6-bisphosphatase gene for enhancing the photosynthetic rate in Arabidopsis thaliana","authors":"Fatima Gulzar, Raza Ahmad, Suk-Yoon Kwan, Zulqurnain Khan, Sulaiman Ali Alharbi, Mohmmad Maroof Shah, Shoaib ur Rehman, Maria Siddique, Mohammad Javed Ansari, Irum Shahzadi, Muhammad Abu Bakar Saddique, Muhmmad Zahid Ishaq, Ummara Waheed","doi":"10.1071/fp24034","DOIUrl":"https://doi.org/10.1071/fp24034","url":null,"abstract":"<p>Transgenic <i>Arabidopsis thaliana</i> (ecotype Columbia) was successfully transformed with the gene <i>fructose-1,6-bisphosphatase</i> (<i>FBPas</i>e) and named as <i>AtFBPase</i> plants. Transgenic plants exhibited stable transformation, integration and significantly higher expressions for the transformed gene. Morphological evaluation of transgenic plants showed increased plant height (35 cm), number of leaves (25), chlorophyll contents (28%), water use efficiency (increased from 1.5 to 2.6 μmol CO<sub>2</sub> μmol<sup>−1</sup> H<sub>2</sub>O) and stomatal conductance (20%), which all resulted in an enhanced photosynthetic rate (2.7 μmol m<sup>−2</sup> s<sup>−1</sup>) compared to wild type plants. This study suggests the vital role of <i>FBPase</i> gene in the modification of regulatory pathways to enhance the photosynthetic rate, which can also be utilised for economic crops in future.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"7 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140636301","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}