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Unlocking the potential of biochar in the remediation of soils contaminated with heavy metals for sustainable agriculture. 发掘生物炭在修复受重金属污染土壤方面的潜力,促进可持续农业。
IF 3 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23257
Zubaira Maqbool, Muhammad Shahbaz Farooq, Anum Rafiq, Muhammad Uzair, Muhammad Yousuf, Muhammad Ramzan Khan, Shuhao Huo

Agricultural soils contaminated with heavy metals (HMs) impose a threat to the environmental and to human health. Amendment with biochar could be an eco-friendly and cost-effective option to decrease HMs in contaminated soil. This paper reviews the application of biochar as a soil amendment to immobilise HMs in contaminated soil. We discuss the technologies of its preparation, their specific properties, and effect on the bioavailability of HMs. Biochar stabilises HMs in contaminated soil, enhance the overall quality of the contaminated soil, and significantly reduce HM uptake by plants, making it an option in soil remediation for HM contamination. Biochar enhances the physical (e.g. bulk density, soil structure, water holding capacity), chemical (e.g. cation exchange capacity, pH, nutrient availability, ion exchange, complexes), and biological properties (e.g. microbial abundance, enzymatic activities) of contaminated soil. Biochar also enhances soil fertility, improves plant growth, and reduces the plant availability of HMs. Various field studies have shown that biochar application reduces the bioavailability of HMs from contaminated soil while increasing crop yield. The review highlights the positive effects of biochar by reducing HM bioavailability in contaminated soils. Future work is recommended to ensure that biochars offer a safe and sustainable solution to remediate soils contaminated with HMs.

受重金属(HMs)污染的农业土壤对环境和人类健康都构成了威胁。使用生物炭进行土壤改良是减少受污染土壤中 HMs 的一种环保且具有成本效益的选择。本文回顾了生物炭作为土壤改良剂固定受污染土壤中 HMs 的应用。我们讨论了生物炭的制备技术、具体特性以及对 HMs 生物利用率的影响。生物炭能稳定受污染土壤中的 HMs,提高受污染土壤的整体质量,并显著减少植物对 HMs 的吸收,使其成为 HM 污染土壤修复的一种选择。生物炭可提高受污染土壤的物理(如容重、土壤结构、持水能力)、化学(如阳离子交换能力、pH 值、养分可用性、离子交换、络合物)和生物特性(如微生物数量、酶活性)。生物炭还能提高土壤肥力,改善植物生长,减少植物对 HMs 的吸收。各种实地研究表明,施用生物炭可降低受污染土壤中 HMs 的生物利用率,同时提高作物产量。本综述强调了生物炭通过降低受污染土壤中的 HM 生物利用率而产生的积极影响。建议今后开展工作,确保生物炭为补救受 HMs 污染的土壤提供安全、可持续的解决方案。
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引用次数: 0
Mutant crtRB1 gene negates the unfavourable effects of opaque2 gene on germination and seed vigour among shrunken2-based biofortified sweet corn genotypes. 在基于缩二基因的生物强化甜玉米基因型中,突变体 crtRB1 基因抵消了缩二基因对萌芽和种子活力的不利影响。
IF 3 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23179
Brijesh K Mehta, Hema S Chauhan, Sudipta Basu, Anjali Anand, Aanchal Baveja, Rajkumar U Zunjare, Vignesh Muthusamy, Ashok K Singh, Firoz Hossain

Sweet corn is one of the most popular vegetables worldwide. However, traditional shrunken2 (sh2 )-based sweet corn varieties are poor in nutritional quality. Here, we analysed the effect of (1) β-carotene hydroxylase1 (crtRB1 ), (2) opaque2 (o2 ) and (3) o2+crtRB1 genes on nutritional quality, germination, seed vigour and physico-biochemical traits in a set of 27 biofortified sh2 -based sweet corn inbreds. The biofortified sweet corn inbreds recorded significantly higher concentrations of proA (16.47μg g-1 ), lysine (0.36%) and tryptophan (0.09%) over original inbreds (proA: 3.14μg g-1 , lysine: 0.18%, tryptophan: 0.04%). The crtRB1 -based inbreds had the lowest electrical conductivity (EC), whereas o2 -based inbreds possessed the highest EC. The o2 +crtRB1 -based inbreds showed similar EC to the original inbreds. Interestingly, o2 -based inbreds also had the lowest germination and seed vigour compared to original inbreds, whereas crtRB1 and o2 +crtRB1 introgressed sweet corn inbreds showed similar germination and seed vigour traits to their original versions. This suggested that the negative effect of o2 on germination, seed vigour and EC is nullified by crtRB1 in the double mutant sweet corn. Overall, o2 +crtRB1 -based sweet corn inbreds were found the most desirable over crtRB1 - and o2 -based inbreds alone.

甜玉米是全球最受欢迎的蔬菜之一。然而,传统的基于缩二(sh2)的甜玉米品种营养质量较差。在此,我们分析了(1)β-胡萝卜素羟化酶1(crtRB1)、(2)不透明2(o2)和(3)o2+crtRB1基因对27个基于sh2的生物强化甜玉米近交系的营养品质、发芽率、种子活力和物理生化性状的影响。生物强化甜玉米杂交种的原A(16.47μg g-1)、赖氨酸(0.36%)和色氨酸(0.09%)含量明显高于原始杂交种(原A:3.14μg g-1,赖氨酸:0.18%,色氨酸:0.04%)。以 crtRB1 为基础的杂交种导电率(EC)最低,而以 o2 为基础的杂交种导电率最高。基于 o2+crtRB1 的近交系的导电率与原始近交系相似。有趣的是,与原始近交系相比,以 o2 为基础的近交系的发芽率和种子活力也最低,而以 crtRB1 和 o2+crtRB1 为基础导入的甜玉米近交系的发芽率和种子活力性状与原始近交系相似。这表明,在双突变体甜玉米中,crtRB1 抵消了 o2 对萌芽、种子活力和欧共体的负面影响。总体而言,以 o2+crtRB1 为基础的甜玉米近交系比以 crtRB1- 和 o2 为基础的近交系最理想。
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引用次数: 0
Melatonin modulates the tolerance of plants to water stress: morphological response of the molecular mechanism. 褪黑激素调节植物对水分胁迫的耐受性:分子机制的形态学反应
IF 3 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23199
Minmin He, Gui Geng, Shuyang Mei, Gang Wang, Lihua Yu, Yao Xu, Yuguang Wang

Water stress (drought and waterlogging) leads to an imbalance in plant water distribution, disrupts cell homeostasis, and severely inhibits plant growth. Melatonin is a growth hormone that plants synthesise and has been shown to resist adversity in many plants. This review discusses the biosynthesis and metabolism of melatonin, as well as the changes in plant morphology and physiological mechanisms caused by the molecular defence process. Melatonin induces the expression of related genes in the process of plant photosynthesis under stress and protects the structural integrity of chloroplasts. Exogenous melatonin can maintain the dynamic balance of root ion exchange under waterlogging stress. Melatonin can repair mitochondria and alleviate damage caused by reactive oxygen species and reactive nitrogen species; and has a wide range of uses in the regulation of stress-specific genes and the activation of antioxidant enzyme genes. Melatonin improves the stability of membrane lipids in plant cells and maintains osmotic balance by regulating water channels. There is crosstalk between melatonin and other hormones, which jointly improve the ability of the root system to absorb water and breathe and promote plant growth. Briefly, as a multifunctional molecule, melatonin improves the tolerance of plants under water stress and promotes plant growth and development.

水胁迫(干旱和水涝)会导致植物水分分布失衡,破坏细胞平衡,严重抑制植物生长。褪黑激素是植物合成的一种生长激素,在许多植物中已被证明能抵抗逆境。本综述讨论褪黑激素的生物合成和新陈代谢,以及分子防御过程引起的植物形态和生理机制的变化。褪黑激素能诱导胁迫下植物光合作用过程中相关基因的表达,保护叶绿体结构的完整性。外源褪黑激素能维持根系在水涝胁迫下离子交换的动态平衡。褪黑素能修复线粒体,减轻活性氧和活性氮的损伤;在调控胁迫特异性基因和激活抗氧化酶基因方面有广泛的用途。褪黑激素能提高植物细胞膜脂质的稳定性,并通过调节水通道维持渗透平衡。褪黑激素与其他激素之间存在串联作用,共同提高根系的吸水和呼吸能力,促进植物生长。简而言之,作为一种多功能分子,褪黑激素能提高植物对水胁迫的耐受性,促进植物生长发育。
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引用次数: 0
Genome-wide identification, phylogeny and expression analysis of the R2R3-MYB gene family in quinoa (Chenopodium quinoa) under abiotic stress. 非生物胁迫下藜麦 R2R3-MYB 基因家族的全基因组鉴定、系统发育和表达分析
IF 3 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23261
Pengcheng Ding, Peng Tang, Xiaofen Li, Adeela Haroon, Saima Nasreen, Hafeez Noor, Kotb A Attia, Asmaa M Abushady, Rongzhen Wang, Kaiyuan Cui, Xiangyun Wu, Min Sun, Zhiqiang Gao

The MYB transcription factor (TF) are among the largest gene families of plants being responsible for several biological processes. The R2R3-MYB gene family are integral player regulating plant primary and secondary metabolism, growth and development, and responses to hormones and stresses. The phylogenetic analysis combined with gene structure analysis and motif determination resulted in division of R2R3-MYB gene family into 27 subgroups. Evidence generated from synteny analyses indicated that CqR2R3-MYBs gene family is featured by tandem and segmental duplication events. On the basis of RNA-Seq data, the expression patterns of different tissues under salt treatment were investigated resulting CqR2R3-MYB genes high expression both in roots and stem of quinoa (Chenopodium quinoa ) plants. More than half of CqR2R3-MYB genes showed expression under salt stress. Based on this result, CqR2R3-MYB s may regulate quinoa plant growth development and resistance to abiotic stresses. These findings provided comprehensive insights on role of CqR2R3-MYBs gene family members in quinoa and candidate MYB gene family members can be further studies on their role for abiotic stress tolerance in crop plants.

MYB 转录因子(TF)是植物中最大的基因家族之一,负责多个生物过程。R2R3-MYB 基因家族是调节植物初级和次级代谢、生长和发育以及对激素和胁迫反应的重要角色。通过系统进化分析、基因结构分析和基因主题确定,R2R3-MYB 基因家族被分为 27 个亚群。通过同源染色体分析得出的证据表明,CqR2R3-MYBs基因家族具有串联和节段重复事件。以 RNA-Seq 数据为基础,研究了盐处理下不同组织的表达模式,结果发现 CqR2R3-MYB 基因在藜麦植株根部和茎部均有高表达。一半以上的 CqR2R3-MYB 基因在盐胁迫下有表达。基于这一结果,CqR2R3-MYB可能调控藜麦植物的生长发育和对非生物胁迫的抗性。这些发现全面揭示了CqR2R3-MYBs基因家族成员在藜麦中的作用,候选的MYB基因家族成员可进一步研究其在作物耐受非生物胁迫中的作用。
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引用次数: 0
The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum). 黑草(Alopecurus myosuroides)和小麦(Triticum aestivum)对涝害的不同反应背后的机制。
IF 3 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23193
Christian Harrison, Clarice Noleto-Dias, Gianluca Ruvo, David J Hughes, Daniel P Smith, Andrew Mead, Jane L Ward, Sigrid Heuer, Dana R MacGregor

Black-grass (Alopecurus myosuroides ) is one of the most problematic agricultural weeds of Western Europe, causing significant yield losses in winter wheat (Triticum aestivum ) and other crops through competition for space and resources. Previous studies link black-grass patches to water-retaining soils, yet its specific adaptations to these conditions remain unclear. We designed pot-based waterlogging experiments to compare 13 biotypes of black-grass and six cultivars of wheat. These showed that wheat roots induced aerenchyma when waterlogged whereas aerenchyma-like structures were constitutively present in black-grass. Aerial biomass of waterlogged wheat was smaller, whereas waterlogged black-grass was similar or larger. Variability in waterlogging responses within and between these species was correlated with transcriptomic and metabolomic changes in leaves of control or waterlogged plants. In wheat, transcripts associated with regulation and utilisation of phosphate compounds were upregulated and sugars and amino acids concentrations were increased. Black-grass biotypes showed limited molecular responses to waterlogging. Some black-grass amino acids were decreased and one transcript commonly upregulated was previously identified in screens for genes underpinning metabolism-based resistance to herbicides. Our findings provide insights into the different waterlogging tolerances of these species and may help to explain the previously observed patchiness of this weed's distribution in wheat fields.

黑草(Alopecurus myosuroides)是西欧最棘手的农业杂草之一,通过争夺空间和资源,给冬小麦(Triticum aestivum)和其他作物造成了巨大的产量损失。以前的研究将黑草斑块与保水土壤联系起来,但黑草对这些条件的具体适应性仍不清楚。我们设计了盆栽涝害实验,比较了 13 种黑草生物型和 6 种小麦栽培品种。实验结果表明,小麦根系在积水时会诱发气根肿,而黑草的气根肿样结构则是持续存在的。受涝小麦的气生生物量较小,而受涝黑草的气生生物量相似或更大。这些物种内部和之间对水涝反应的差异与对照或水涝植物叶片的转录组和代谢组变化相关。在小麦中,与磷酸盐化合物的调节和利用相关的转录本上调,糖和氨基酸的浓度增加。黑草生物型对水涝的分子反应有限。一些黑草氨基酸含量降低,一个普遍上调的转录本先前在筛选除草剂抗性代谢基因时被发现。我们的研究结果为了解这些物种对水涝的不同耐受性提供了见解,并可能有助于解释以前观察到的这种杂草在小麦田中的零星分布。
{"title":"The mechanisms behind the contrasting responses to waterlogging in black-grass (<i>Alopecurus myosuroides</i>) and wheat (<i>Triticum aestivum</i>).","authors":"Christian Harrison, Clarice Noleto-Dias, Gianluca Ruvo, David J Hughes, Daniel P Smith, Andrew Mead, Jane L Ward, Sigrid Heuer, Dana R MacGregor","doi":"10.1071/FP23193","DOIUrl":"10.1071/FP23193","url":null,"abstract":"<p><p>Black-grass (Alopecurus myosuroides ) is one of the most problematic agricultural weeds of Western Europe, causing significant yield losses in winter wheat (Triticum aestivum ) and other crops through competition for space and resources. Previous studies link black-grass patches to water-retaining soils, yet its specific adaptations to these conditions remain unclear. We designed pot-based waterlogging experiments to compare 13 biotypes of black-grass and six cultivars of wheat. These showed that wheat roots induced aerenchyma when waterlogged whereas aerenchyma-like structures were constitutively present in black-grass. Aerial biomass of waterlogged wheat was smaller, whereas waterlogged black-grass was similar or larger. Variability in waterlogging responses within and between these species was correlated with transcriptomic and metabolomic changes in leaves of control or waterlogged plants. In wheat, transcripts associated with regulation and utilisation of phosphate compounds were upregulated and sugars and amino acids concentrations were increased. Black-grass biotypes showed limited molecular responses to waterlogging. Some black-grass amino acids were decreased and one transcript commonly upregulated was previously identified in screens for genes underpinning metabolism-based resistance to herbicides. Our findings provide insights into the different waterlogging tolerances of these species and may help to explain the previously observed patchiness of this weed's distribution in wheat fields.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139989776","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Corrigendum to: Transcriptome-based analysis of candidate gene markers associated with resistance mechanism to Phytophthora melonis that causes root and crown rot in pumpkin. 更正:基于转录组的候选基因标记分析与南瓜根腐病和冠腐病的抗性机制有关。
IF 3 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23038_CO
Mohammadhadi Najafi, Mehdi Nasr-Esfahani, Jafar Vatandoost, Hamed Hassanzade-Khankahdani, Matin Jami Moeini
{"title":"<i>Corrigendum to</i>: Transcriptome-based analysis of candidate gene markers associated with resistance mechanism to <i>Phytophthora melonis</i> that causes root and crown rot in pumpkin.","authors":"Mohammadhadi Najafi, Mehdi Nasr-Esfahani, Jafar Vatandoost, Hamed Hassanzade-Khankahdani, Matin Jami Moeini","doi":"10.1071/FP23038_CO","DOIUrl":"https://doi.org/10.1071/FP23038_CO","url":null,"abstract":"","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":"51 ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140858151","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Growth, ultrastructural and physiological characteristics of Abelmoschus cytotypes under elevated ozone stress: a study on ploidy-specific responses. 高浓度臭氧胁迫下阿贝尔莫斯卡菌细胞型的生长、超微结构和生理特点:关于倍体特异性反应的研究。
IF 3 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23229
Priyanka Singh, Naushad Ansari, Amit Kumar Mishra, Madhoolika Agrawal, Shashi Bhushan Agrawal

Tropospheric ozone (O3 ) is a significant abiotic stressor whose rising concentration negatively influences plant growth. Studies related to the differential response of Abelmoschus cytotypes to elevated O3 treatment are scarce and need further exploration to recognise the role of polyploidisation in stress tolerance. In this study, we analysed the changes in growth pattern, ultrastructure, physiology and foliar protein profile occurring under O3 stress in Abelmoschus moschatus (monoploid), Abelmoschus esculentus (diploid) and Abelmoschus caillei (triploid). Our findings showed that higher stomatal conductance in A. moschatus triggered higher O3 intake, causing damage to stomatal cells and photosynthetic pigments. Additionally, it caused a reduction in photosynthetic rates, leading to reduced plant growth, total biomass and economic yield. This O3 -induced toxicity was less in diploid and triploid cytotypes of Abelmoschus . Protein profiling by sodium dodecyl sulpate-polyacrylamide gel electrophoresis showed a significant decrease in the commonly found RuBisCO larger and smaller subunits. The decrease was more prominent in monoploid compared to diploid and triploid. This study provides crucial data for research that aim to enhance plant ability to withstand O3 induced oxidative stress. Our findings may help in developing a tolerant variety through plant breeding techniques, which will be economically more advantageous in reaching the objective of sustainable production at the high O3 levels projected under a climate change scenario.

对流层臭氧(O3)是一种重要的非生物胁迫因子,其浓度升高会对植物生长产生负面影响。有关阿贝尔莫须有细胞型对高浓度 O3 处理的不同反应的研究很少,需要进一步探讨多倍体化在抗逆性中的作用。在本研究中,我们分析了在O3胁迫下Abelmoschus moschatus(单倍体)、Abelmoschus esculentus(二倍体)和Abelmoschus caillei(三倍体)的生长模式、超微结构、生理机能和叶片蛋白质谱的变化。我们的研究结果表明,毛果芸香科植物较高的气孔导度会导致较高的臭氧摄入量,从而对气孔细胞和光合色素造成损害。此外,它还会降低光合速率,导致植物生长、总生物量和经济产量下降。这种 O3 诱导的毒性在二倍体和三倍体阿贝尔莫希子细胞型中较小。通过十二烷基硫酸钠-聚丙烯酰胺凝胶电泳进行的蛋白质分析表明,常见的 RuBisCO 大亚基和小亚基显著减少。与二倍体和三倍体相比,单倍体的下降更为明显。这项研究为旨在提高植物抵御 O3 诱导的氧化胁迫能力的研究提供了重要数据。我们的研究结果可能有助于通过植物育种技术开发出耐受性强的品种,这将更有利于实现在气候变化情况下预计的高臭氧浓度条件下的可持续生产目标。
{"title":"Growth, ultrastructural and physiological characteristics of <i>Abelmoschus</i> cytotypes under elevated ozone stress: a study on ploidy-specific responses.","authors":"Priyanka Singh, Naushad Ansari, Amit Kumar Mishra, Madhoolika Agrawal, Shashi Bhushan Agrawal","doi":"10.1071/FP23229","DOIUrl":"10.1071/FP23229","url":null,"abstract":"<p><p>Tropospheric ozone (O3 ) is a significant abiotic stressor whose rising concentration negatively influences plant growth. Studies related to the differential response of Abelmoschus cytotypes to elevated O3 treatment are scarce and need further exploration to recognise the role of polyploidisation in stress tolerance. In this study, we analysed the changes in growth pattern, ultrastructure, physiology and foliar protein profile occurring under O3 stress in Abelmoschus moschatus (monoploid), Abelmoschus esculentus (diploid) and Abelmoschus caillei (triploid). Our findings showed that higher stomatal conductance in A. moschatus triggered higher O3 intake, causing damage to stomatal cells and photosynthetic pigments. Additionally, it caused a reduction in photosynthetic rates, leading to reduced plant growth, total biomass and economic yield. This O3 -induced toxicity was less in diploid and triploid cytotypes of Abelmoschus . Protein profiling by sodium dodecyl sulpate-polyacrylamide gel electrophoresis showed a significant decrease in the commonly found RuBisCO larger and smaller subunits. The decrease was more prominent in monoploid compared to diploid and triploid. This study provides crucial data for research that aim to enhance plant ability to withstand O3 induced oxidative stress. Our findings may help in developing a tolerant variety through plant breeding techniques, which will be economically more advantageous in reaching the objective of sustainable production at the high O3 levels projected under a climate change scenario.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139680978","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assembly and comparative analysis of the complete mitochondrial genome of Pinellia ternata. 三叶松完整线粒体基因组的组装和比较分析。
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23256
Xiao Liu, Qian You, Mengmeng Liu, Chen Bo, Yanfang Zhu, Yongbo Duan, Jianping Xue, Dexin Wang, Tao Xue

Pinellia ternata is an important natural medicinal herb in China. However, it is susceptible to withering when exposed to high temperatures during growth, which limits its tuber production. Mitochondria usually function in stress response. The P . ternata mitochondrial (mt) genome has yet to be explored. Therefore, we integrated PacBio and Illumina sequencing reads to assemble and annotate the mt genome of P . ternata . The circular mt genome of P . ternata is 876 608bp in length and contains 38 protein-coding genes (PCGs), 20 tRNA genes and three rRNA genes. Codon usage, sequence repeats, RNA editing and gene migration from chloroplast (cp) to mt were also examined. Phylogenetic analysis based on the mt genomes of P . ternata and 36 other taxa revealed the taxonomic and evolutionary status of P . ternata . Furthermore, we investigated the mt genome size and GC content by comparing P . ternata with the other 35 species. An evaluation of non-synonymous substitutions and synonymous substitutions indicated that most PCGs in the mt genome underwent negative selection. Our results provide comprehensive information on the P . ternata mt genome, which may facilitate future research on the high-temperature response of P . ternata and provide new molecular insights on the Araceae family.

半夏是中国重要的天然药材。然而,它在生长过程中暴露于高温时容易枯萎,从而限制了块茎的产量。线粒体通常具有应激反应功能。P. ternata线粒体(mt)基因组尚待探索。因此,我们整合了 PacBio 和 Illumina 测序读数来组装和注释 P. ternata 的线粒体基因组。P. ternata的环状mt基因组全长876 608bp,包含38个蛋白质编码基因(PCGs)、20个tRNA基因和3个rRNA基因。研究还考察了密码子使用、序列重复、RNA 编辑以及基因从叶绿体(cp)向 mt 的迁移。基于 P. ternata 和其他 36 个类群的 mt 基因组的系统发生分析揭示了 P. ternata 的分类和进化地位。此外,我们还通过比较 P. ternata 和其他 35 个物种,研究了 mt 基因组的大小和 GC 含量。对非同义替换和同义替换的评估表明,mt 基因组中的大多数 PCGs 都经历了负选择。我们的研究结果提供了关于 P. ternata mt 基因组的全面信息,有助于今后对 P. ternata 高温响应的研究,并为天南星科植物提供了新的分子见解。
{"title":"Assembly and comparative analysis of the complete mitochondrial genome of <i>Pinellia ternata</i>.","authors":"Xiao Liu, Qian You, Mengmeng Liu, Chen Bo, Yanfang Zhu, Yongbo Duan, Jianping Xue, Dexin Wang, Tao Xue","doi":"10.1071/FP23256","DOIUrl":"10.1071/FP23256","url":null,"abstract":"<p><p>Pinellia ternata is an important natural medicinal herb in China. However, it is susceptible to withering when exposed to high temperatures during growth, which limits its tuber production. Mitochondria usually function in stress response. The P . ternata mitochondrial (mt) genome has yet to be explored. Therefore, we integrated PacBio and Illumina sequencing reads to assemble and annotate the mt genome of P . ternata . The circular mt genome of P . ternata is 876 608bp in length and contains 38 protein-coding genes (PCGs), 20 tRNA genes and three rRNA genes. Codon usage, sequence repeats, RNA editing and gene migration from chloroplast (cp) to mt were also examined. Phylogenetic analysis based on the mt genomes of P . ternata and 36 other taxa revealed the taxonomic and evolutionary status of P . ternata . Furthermore, we investigated the mt genome size and GC content by comparing P . ternata with the other 35 species. An evaluation of non-synonymous substitutions and synonymous substitutions indicated that most PCGs in the mt genome underwent negative selection. Our results provide comprehensive information on the P . ternata mt genome, which may facilitate future research on the high-temperature response of P . ternata and provide new molecular insights on the Araceae family.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":" ","pages":""},"PeriodicalIF":2.6,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139691626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Perception of strigolactones and the coordinated phytohormonal regulation on rice (Oryza sativa) tillering is affected by endogenous ascorbic acid. 水稻(Oryza sativa)分蘖时对绞股蓝内酯的感知和植物激素的协调调节受内源抗坏血酸的影响。
IF 3 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23148
Le Yu, Jiankai Zhou, Junlong Lin, Mengwei Chen, Fang Liu, Xinlin Zheng, Liping Zhou, Ruozhong Wang, Langtao Xiao, Yonghai Liu

Phytohormones play a key role in regulating tiller number. Ascorbic acid (Asc)-phytohormone interaction plays a pivotal role in the regulation of senescence. We analysed the relationship between Asc and the enzyme concentrations and gene transcript abundances related to the signal perception of strigolactones (SLs), the contents of four phytohormones (abscisic acid, ABA; jasmonic acid, JA; indole acetic acid, IAA; cytokinin, CTK), the enzyme concentrations and gene transcript abundances related to the synthesis or transportation of these four phytohormones. Our results showed that Asc deficiency leads to the upregulation of enzyme concentrations, gene transcript abundances related to the SL signal perception, ABA synthesis and IAA transport. The altered level of Asc also leads to a change in the contents of ABA, JA, IAA and CTK. These findings support the conclusion that Asc or Asc/DHA play an important role in the signal perception and transduction of SLs, and Asc may affect the coordinated regulation of SL, IAA and CTK on rice (Oryza sativa ) tillering.

植物激素在调节分蘖数量方面起着关键作用。抗坏血酸(Asc)与植物激素的相互作用在衰老调控中起着关键作用。我们分析了抗坏血酸(Asc)与糙叶内酯(SLs)信号感知相关的酶浓度和基因转录本丰度、四种植物激素(脱落酸,ABA;茉莉酸,JA;吲哚乙酸,IAA;细胞分裂素,CTK)含量、合成或运输这四种植物激素相关的酶浓度和基因转录本丰度之间的关系。结果表明,Asc缺乏会导致与SL信号感知、ABA合成和IAA转运有关的酶浓度、基因转录本丰度上调。Asc水平的改变也会导致ABA、JA、IAA和CTK含量的变化。这些研究结果支持了以下结论:Asc或Asc/DHA在SL信号感知和传导中起着重要作用,Asc可能影响SL、IAA和CTK对水稻(Oryza sativa)分蘖的协调调控。
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引用次数: 0
Upregulation of TaHSP90A transcripts enhances heat tolerance and increases grain yield in wheat under changing climate conditions. TaHSP90A转录本的上调增强了小麦在气候变化条件下的耐热性并提高了谷物产量。
IF 3 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-02-01 DOI: 10.1071/FP23275
Ali Ammar, Zulfiqar Ali, Muhammad Abu Bakar Saddique, Muhammad Habib-Ur-Rahman, Imtiaz Ali

Plants have certain adaptation mechanisms to combat temperature extremes and fluctuations. The heat shock protein (HSP90A) plays a crucial role in plant defence mechanisms under heat stress. In silico analysis of the eight TaHSP90A transcripts showed diverse structural patterns in terms of intron/exons, domains, motifs and cis elements in the promoter region in wheat. These regions contained cis elements related to hormones, biotic and abiotic stress and development. To validate these findings, two contrasting wheat genotypes E-01 (thermo-tolerant) and SHP-52 (thermo-sensitive) were used to evaluate the expression pattern of three transcripts TraesCS2A02G033700.1, TraesCS5B02G258900.3 and TraesCS5D02G268000.2 in five different tissues at five different temperature regimes. Expression of TraesCS2A02G033700.1 was upregulated (2-fold) in flag leaf tissue after 1 and 4h of heat treatment in E-01. In contrast, SHP-52 showed downregulated expression after 1h of heat treatment. Additionally, it was shown that under heat stress, the increased expression of TaHSP90A led to an increase in grain production. As the molecular mechanism of genes involved in heat tolerance at the reproductive stage is mostly unknown, these results provide new insights into the role of TaHSP90A transcripts in developing phenotypic plasticity in wheat to develop heat-tolerant cultivars under the current changing climate scenario.

植物有一定的适应机制来对抗极端温度和温度波动。热休克蛋白(HSP90A)在热胁迫下的植物防御机制中起着至关重要的作用。对 8 个 TaHSP90A 转录本的硅学分析表明,小麦启动子区域的内含子/外显子、结构域、图案和顺式元件的结构模式多种多样。这些区域包含与激素、生物和非生物胁迫以及发育有关的顺式元件。为了验证这些发现,研究人员利用两种不同的小麦基因型 E-01(耐高温)和 SHP-52(对温度敏感)来评估 TraesCS2A02G033700.1、TraesCS5B02G258900.3 和 TraesCS5D02G268000.2 这三个转录本在五种不同温度条件下在五个不同组织中的表达模式。在 E-01 热处理 1 小时和 4 小时后,旗叶组织中 TraesCS2A02G033700.1 的表达上调(2 倍)。相比之下,SHP-52 的表达在热处理 1 小时后出现下调。此外,研究还表明,在热胁迫下,TaHSP90A 的表达增加会导致谷物产量增加。由于生殖期耐热基因的分子机理大多不清楚,这些研究结果为TaHSP90A转录本在开发小麦表型可塑性方面的作用提供了新的见解,从而在当前气候不断变化的情况下开发出耐热栽培品种。
{"title":"Upregulation of <i>TaHSP90A</i> transcripts enhances heat tolerance and increases grain yield in wheat under changing climate conditions.","authors":"Ali Ammar, Zulfiqar Ali, Muhammad Abu Bakar Saddique, Muhammad Habib-Ur-Rahman, Imtiaz Ali","doi":"10.1071/FP23275","DOIUrl":"10.1071/FP23275","url":null,"abstract":"<p><p>Plants have certain adaptation mechanisms to combat temperature extremes and fluctuations. The heat shock protein (HSP90A) plays a crucial role in plant defence mechanisms under heat stress. In silico analysis of the eight TaHSP90A transcripts showed diverse structural patterns in terms of intron/exons, domains, motifs and cis elements in the promoter region in wheat. These regions contained cis elements related to hormones, biotic and abiotic stress and development. To validate these findings, two contrasting wheat genotypes E-01 (thermo-tolerant) and SHP-52 (thermo-sensitive) were used to evaluate the expression pattern of three transcripts TraesCS2A02G033700.1, TraesCS5B02G258900.3 and TraesCS5D02G268000.2 in five different tissues at five different temperature regimes. Expression of TraesCS2A02G033700.1 was upregulated (2-fold) in flag leaf tissue after 1 and 4h of heat treatment in E-01. In contrast, SHP-52 showed downregulated expression after 1h of heat treatment. Additionally, it was shown that under heat stress, the increased expression of TaHSP90A led to an increase in grain production. As the molecular mechanism of genes involved in heat tolerance at the reproductive stage is mostly unknown, these results provide new insights into the role of TaHSP90A transcripts in developing phenotypic plasticity in wheat to develop heat-tolerant cultivars under the current changing climate scenario.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139702230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Functional Plant Biology
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