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2021 Computing in Cardiology (CinC)最新文献

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A Prediction Model of In-Patient Deteriorations Based on Passive Vital Signs Monitoring Technology 基于被动生命体征监测技术的住院患者病情恶化预测模型
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662864
Veronica Maidel, Maayan Lia Yizraeli Davidovich, Z. Shinar, Tal Klap
Lately, many health systems accelerated their initiatives of advanced remote monitoring systems. Moving to an unattended environment requires overcoming patients' compliance issues and demonstrating the effectiveness of remote monitoring technology. Current Early Warning Scores detection of deterioration, commonly based on spot check EMR data, demonstrates low translational impact from one facility to another. In this study we used vitals collected passively by a sensor, to build a Machine Learning model for timely prediction of deteriorating patients, within 24-hours of their transfer to ICU or death. Time series features, such as trends and vitals' variability were used in conjunction with age & comorbidity data. Evaluating the model yielded an AUROC of 0.81 on data from an inpatient setting, and an AUROC of 0.88 on an independent test set from a COVID-19 unit. The suggested model, based on passive measurement technology, performs equally well as models based on EMR that include nurse inputs. Applying the model on other acute settings (such as a COVID-19 unit) showed similar performance, increasing confidence of its robustness and transferability. The model performance combined with the fact that it does not require human compliance, makes it a good candidate for future testing on home settings.
最近,许多卫生系统加快了先进远程监测系统的行动。转移到无人值守的环境需要克服患者的依从性问题,并展示远程监测技术的有效性。目前的早期预警评分(Early Warning Scores)对恶化的检测,通常基于EMR数据的抽查,表明从一个设施到另一个设施的转化影响很小。在这项研究中,我们使用传感器被动收集的生命体征来建立一个机器学习模型,以便在患者转至ICU或死亡后24小时内及时预测病情恶化的患者。时间序列特征,如趋势和生命体征的可变性与年龄和合并症数据一起使用。对该模型进行评估后,住院患者数据的AUROC为0.81,来自COVID-19单位的独立测试集的AUROC为0.88。建议的基于被动测量技术的模型与基于包含护士输入的电子病历模型表现同样良好。将该模型应用于其他急性环境(如COVID-19单位)显示出类似的性能,增加了对其鲁棒性和可转移性的信心。该模型的性能加上它不需要人工遵守的事实,使其成为未来在家庭环境中进行测试的一个很好的候选者。
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引用次数: 0
N-BEATS for Heart Dysfunction Classification N-BEATS用于心功能障碍分类
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662740
B. Puszkarski, K. Hryniów, G. Sarwas
Introduction: Recurrent Neural Networks are useful tools for the prediction and classification of ECG problems. The most commonly used network for such a solution is Long Short-Term Memory (LSTM) architecture. This study aims to assess if another state-of-the-art solution, Neural Basis Expansion Analysis for Interpretable Time Series (N-BEATS), can be adopted to diagnose the same cardiac problems. In addition, a comparison is conducted for a different number of electrocardiogram leads. Methods: Two architectures were tested for performance and dimension reduction problems, both in variants consisting of blended branches, allowing retaining accuracy while reducing the computational capacity needed. Results: Our team's (WEAIT) entry was scored incorrectly due to unexpected formatting in outputs; hence only results from cross-validation are presented. LSTM outperforms N-BEATS in terms of multi-label classification, data set resilience, and obtained challenge metrics. Still, N-BEATS can obtain acceptable results and outperforms LSTM in terms of complexity and speed. Conclusions: This paper features a novel approach of using the N-BEATS, which was previously used only for forecasting, to classify ECG signals with success. While N-BEATS multi-label classification capacity is lower than LSTM, its speed allows it to be used on wearable devices.
介绍:递归神经网络是预测和分类心电图问题的有用工具。这种解决方案最常用的网络是长短期记忆(LSTM)架构。本研究旨在评估是否可以采用另一种最先进的解决方案,可解释时间序列的神经基础扩展分析(N-BEATS)来诊断相同的心脏问题。此外,还对不同数量的心电图导联进行了比较。方法:测试了两种架构的性能和降维问题,这两种架构都是由混合分支组成的变体,在保持准确性的同时减少了所需的计算能力。结果:由于输出格式意外,我们团队(WEAIT)的参赛作品被错误评分;因此,只有交叉验证的结果才会出现。LSTM在多标签分类、数据集弹性和获得的挑战指标方面优于N-BEATS。尽管如此,N-BEATS仍然可以获得可接受的结果,并且在复杂性和速度方面优于LSTM。结论:本文采用了一种使用N-BEATS的新方法,该方法以前仅用于预测,成功地对心电信号进行了分类。虽然N-BEATS的多标签分类能力低于LSTM,但其速度允许其在可穿戴设备上使用。
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引用次数: 5
Evolution of Epicardial Rotors into Breakthrough Waves During Atrial Fibrillation in 3D Canine Biatrial Model with Detailed Fibre Orientation 具有详细纤维定向的犬双房三维模型心房颤动时心外膜旋翼向突破波的演变
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662910
Ataollah Tajabadi, Aditi Roy, M. Varela, O. Aslanidi
Atrial fibrillation (AF) is the most common arrhythmia, but its mechanisms are still unclear. Commonly observed phenomena during AF are epicardial re-entrant drivers (rotors) and breakthrough waves. This study aims to elucidate AF mechanisms, including links between rotors and breakthroughs. We used 3D canine atrial models based on micro-CT reconstruction of biatrial geometry combined with region-specific electrophysiology models. Hence, the 3D model included ionic and structural heterogeneities in the entire atria, with special focus on the right atrium (RA) and pectinate muscles (PM). Results were visualized through 3D atrial membrane voltage maps (VM), 2D isochronal maps (IM), and wave maps (WM). AF episodes were initiated in the atria and were maintained by several epicardial rotors in the PV and RA. Transmural rotors were also seen to propagate through the PM and reemerge at the RA epicardium during these episodes. IM and WM revealed multiple breakthroughs at the region where the PM connect to the RA. The VM simulations, as well as electrogram-based IM and WM, showed that the complex AF patterns seen experimentally can be explained by the interactions of epicardial and transmural rotors.
心房颤动(AF)是最常见的心律失常,但其机制尚不清楚。房颤中常见的现象是心外膜再入驱动(旋翼)和突破波。本研究旨在阐明AF机制,包括转子与突破之间的联系。我们采用基于微ct双房几何重建结合区域特异性电生理模型的犬心房三维模型。因此,3D模型包括整个心房的离子和结构异质性,特别关注右心房(RA)和果胶肌(PM)。结果通过三维心房膜电压图(VM)、二维等时图(IM)和波图(WM)显示。房颤发作始于心房,由PV和RA的几个心外膜转盘维持。在这些发作期间,也可以看到跨壁转子通过PM传播并在RA心外膜上重新出现。IM和WM揭示了PM与RA连接的区域的多项突破。VM模拟以及基于电图的IM和WM显示,实验中看到的复杂AF模式可以通过心外膜和跨壁转子的相互作用来解释。
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引用次数: 0
A Novel Computational Model of Pacemaker Activity in the Mouse Atrioventricular Node Cell 一种新的小鼠房室结细胞起搏器活动计算模型
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662700
C. Bartolucci, P. Mesirca, Claire Belles, Eugenio Ricci, E. Torre, J. Louradour, M. Mangoni, S. Severi
Nowadays, mathematical modeling has been one of the improvements in technologically advanced science in supporting decision-making in different healthcare scenarios. In the field of numerical modelling of heart electrophysiology, several models of action potential (AP) have been developed for cardiac chambers of different species. The atrioventricular node (AVN) acts as a subsidiary pacemaker and controls impulse conduction between the atria and ventricles. Despite its physiological importance, limited data are available for computing AVN cellular electrophysiology. Further, the ionic mechanisms underlying the automaticity of AVN myocytes are incompletely understood. Only two computational models of AVN have been developed in the last decades (one for rabbit, the other for mouse but without calcium handling). We aimed to develop a new mouse AVN model. We thus build on the preliminary AP mouse AVN model published by Marger et al., which has been updated and improved, by implementing more realistic cellular compartments and calculation of dynamics and handling of intracellular $Ca^{2+}$. The new model reproduces almost all the AVN AP hallmarks and has been used to simulate the effects of blockade of ionic currents involved in AVN pacemaking.
如今,数学建模已经成为技术先进科学在支持不同医疗方案决策方面的改进之一。在心脏电生理数值模拟领域,针对不同种类的心腔建立了不同的动作电位模型。房室结(AVN)作为辅助起搏器,控制心房和心室之间的脉冲传导。尽管AVN在生理上具有重要意义,但用于计算AVN细胞电生理的数据有限。此外,AVN肌细胞自动性的离子机制尚不完全清楚。在过去的几十年里,只有两个AVN的计算模型被开发出来(一个用于兔子,另一个用于老鼠,但没有钙处理)。我们旨在建立一种新的小鼠AVN模型。因此,我们建立在Marger等人发表的初步AP小鼠AVN模型的基础上,该模型已经更新和改进,通过实现更真实的细胞区室和动态计算以及处理细胞内$Ca^{2+}$。新模型几乎再现了AVN所有的AP特征,并已被用于模拟AVN起搏过程中离子电流阻塞的影响。
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引用次数: 0
Segmentation of Atrial Electrical Activity in Intracardiac Electrograms (IECGs) Using Convolutional Neural Network (CNN) Trained on Small Imbalanced Dataset 基于小不平衡数据集训练的卷积神经网络分割心内电图(IECGs)心房电活动
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662729
Jakub Hejc, D. Pospisil, Petra Novotna, M. Pešl, O. Janousek, M. Ronzhina, Z. Stárek
Timing pattern of intracardiac atrial activity recorded by multipolar catheter in the coronary sinus (CS) provides insightful information about the type and approximate origin of common non-complex arrhythmias. Depending on the anatomy of the CS, the atrial activity can be substantially disturbed by ventricular far field complex preventing accurate segmentation by convential methods. In this paper, we present small clinically validated database of 326 surface 12-lead and intracardiac electrograms (ECG and IEGs) and a simple deep learning framework for semantic beat-to-beat segmentation of atrial activity in CS recordings. The model is based on a residual convolutional neural network (CNN) combined with pyramidal upsampling decoder. It is capable to recognize well between atrial and ventricular signals recorded by decapolar CS catheter in multiple arrhythmic scenarios reaching dice score of 0.875 on evaluation dataset. To address a dataset size and imbalance issues, we have adopted several preprocessing and learning techniques with adequate evaluation of its impact on the model performance.
冠状窦内多极导管记录的心内心房活动的时间模式为常见非复杂心律失常的类型和大致起源提供了有见地的信息。根据CS的解剖结构,心房活动可能受到心室远场复合体的严重干扰,传统方法无法准确分割。在本文中,我们提出了326个表面12导联和心内电图(ECG和IEGs)的小型临床验证数据库,以及一个简单的深度学习框架,用于CS记录中心房活动的语义节拍到节拍分割。该模型基于残差卷积神经网络(CNN)和金字塔上采样解码器相结合。在多种心律失常情况下,它能够很好地识别脱极CS导管记录的心房和心室信号,在评估数据集上的dice得分达到0.875。为了解决数据集大小和不平衡问题,我们采用了几种预处理和学习技术,并充分评估了其对模型性能的影响。
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引用次数: 0
Computing in Cardiology [Front cover] 心脏病学中的计算机[封面]
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662876
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引用次数: 0
Automated Diagnosis of Reduced-Lead Electrocardiograms Using a Shared Classifier 使用共享分类器的低铅心电图自动诊断
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662872
H. Jessen, R. V. D. Leur, P. Doevendans, R. V. Es
Portable ECG devices with a reduced number of leads are increasingly being used in clinical practice. As part of the PhysioNet/Computing in Cardiology Challenge 2021, this study aims to develop an algorithm for automated diagnosis of reduced-lead ECGs. We compared separate baseline classifiers for the different lead-subsets with our newly proposed shared classifier. The different models were pre-trained on a physician-annotated dataset of 269,72612-lead ECGs. Fine-tuning was done on the challenge dataset, consisting of 88,243 ECGs. Even though different models showed promising results on the internal pre-training dataset, optimal scores were achieved by the baseline model on the hidden test set. Our team, UMCU, received scores of 0.47, 0.40, 0.41, 0.41, and 0.41 (ranked 14th, 17th, 17th, 17th, and 16th out of 39 teams) for the 12-lead, 6-lead, 4-lead, 3-lead, and 2-lead versions of the hidden test set.
减少导联数量的便携式心电设备越来越多地用于临床实践。作为PhysioNet/Computing in Cardiology Challenge 2021的一部分,该研究旨在开发一种自动诊断低导联心电图的算法。我们将不同铅子集的单独基线分类器与我们新提出的共享分类器进行了比较。不同的模型在医生注释的269,72612导联心电图数据集上进行预训练。对挑战数据集进行了微调,该数据集由88,243个心电图组成。尽管不同的模型在内部预训练数据集上显示出很好的结果,但基线模型在隐藏测试集上获得了最优分数。我们的UMCU团队在12-lead, 6-lead, 4-lead, 3-lead和2-lead版本的隐藏测试集中获得了0.47,0.40,0.41,0.41和0.41的分数(在39个团队中排名第14,17,17,17和16)。
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引用次数: 1
Gender Differences in Short-Term Multiscale Complexity of the Heart Rate Variability 心率变异性短期多尺度复杂性的性别差异
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662906
B. D. Maria, F. Perego, G. Cassetti, V. Bari, B. Cairo, F. Gelpi, Monica Parati, L. Vecchia, A. Porta
Among the analytical methods estimating the complexity of the heart period (HP), the linear model-based multiscale complexity (MSC) approach allows the estimation of the complexity over time scales linked to the cardiac autonomic control, i.e. in the low frequency (LF, 0.04-0.15 Hz) and high frequency $(HF, 0.15-0.4 Hz)$ bands. In this study we exploited MSC to evaluate the differences in the HP variability complexity during daytime (DAY) and nighttime (NIGHT) in 23 healthy females (WOMEN, age $36pm 6yrs)$ ) and 21 males (MEN, age $35pm 5yrs)$ performing a 24-hour Holter electrocardiogram. Parametric power spectral analysis was applied as well for comparison. Complexity indexes were computed regardless of the temporal scale (CI) and in the LF and HF bands ( $CI_{LF}$ and $CI_{HF}$, respectively). We found that the power spectral indexes did not differentiate WOMEN and MEN, while CI and $CI_{LF}$ were higher in WOMEN during DAY. The higher HP complexity in females could be explained by a lower sympathetic drive and more complex hormonal regulation than males. We conclude that MSC was more powerful than power spectral analysis in detecting gender differences in HP variability. In addition, as cardiac control differs between females and males, preventive and therapeutic interventions should take gender differences into account.
在估计心脏周期(HP)复杂性的分析方法中,基于线性模型的多尺度复杂性(MSC)方法允许估计与心脏自主控制相关的时间尺度的复杂性,即在低频(LF, 0.04-0.15 Hz)和高频(HF, 0.15-0.4 Hz)$波段。在这项研究中,我们利用MSC评估了23名健康女性(女性,年龄36美元)和21名男性(男性,年龄35美元)进行24小时动态心电图时,白天(DAY)和夜间(NIGHT) HP变异性复杂性的差异。并采用参数功率谱分析进行比较。计算不同时间尺度(CI)下的LF和HF波段(分别为$CI_{LF}$和$CI_{HF}$)的复杂性指数。我们发现功率谱指数没有区分女性和男性,而CI和$CI_{LF}$在DAY期间在女性中更高。女性较高的HP复杂性可以解释为较低的交感驱动和比男性更复杂的激素调节。我们得出结论,在检测HP变异的性别差异方面,MSC比功率谱分析更有效。此外,由于女性和男性的心脏控制不同,预防和治疗干预应考虑到性别差异。
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引用次数: 0
Validation of the Ventricular Gradient Comparing Sinus Beats and Ectopic Beats 心室梯度对比窦性搏动和异位搏动的验证
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662747
M. Dik, Resi M. Schoonderwoerd, S. Man, A. Maan, C. A. Swenne
Introduction. Wilson assumed that the ventricular gradient (VG) is independent of the ventricular activation order. We sought to validate this tenet by intra-individual comparison of the VG of sinus and ectopic beats, thus assessing both the effects of altered ventricular conduction and of restitution (caused by varying ectopic prematurity). Methods. We studied standard diagnostic ECGs of 118 patients with accidental extrasystoles, who had either normally conducted supraventricular ectopic beats ($SN, N=6$), aberrantly conducted supraventricular ectopic beats ($SA, N=20$), or ventricular ectopic beats ($V, N=92$). We computed the ventricular gradient vectors of the predominant beat, VGp, of the ectopic beat, VGe, the VG difference vector, VGpe, and compared their sizes. Results. The VGe vectors of the SA and $V$ ectopic beats were significantly larger than the VGp vectors. The VGpe vectors were three times larger than the difference in size of the VGe and VGp vectors, demonstrating differences in the VGp and VGe spatial directions. Ectopic prematurity had no influence on these results. Discussion. Electrotonic interactions during repolarization form the likely explanation of our findings. Because of this electrophysiological mechanism, the concept of a conduction-independent ventricular gradient is untenable and cannot be used in ECG diagnostics.
介绍。Wilson假设心室梯度(VG)与心室激活顺序无关。我们试图通过个体内窦性搏动和异位搏动的VG比较来验证这一原则,从而评估心室传导改变和恢复的影响(由不同的异位早产引起)。方法。我们研究了118例意外性早搏患者的标准诊断心电图,这些患者要么正常进行室上异位搏($SN, N=6$),要么异常进行室上异位搏($SA, N=20$),要么心室异位搏($V, N=92$)。我们计算了优势搏动(VGp)、异位搏动(VGe)、心室差矢量(VGpe)的心室梯度矢量,并比较了它们的大小。结果。SA和$V$异位心跳的VGe向量明显大于VGp向量。VGpe矢量的大小是VGe和VGp矢量大小差异的3倍,表明VGp和VGe在空间方向上存在差异。异位早产对这些结果没有影响。讨论。复极化过程中的电紧张相互作用可能解释了我们的发现。由于这种电生理机制,不依赖传导的心室梯度的概念是站不住脚的,不能用于ECG诊断。
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引用次数: 0
Mavacamten Efficacy in Mutation-specific Hypertrophic Cardiomyopathy: an In Silico Approach to Inform Precision Medicine 马伐卡坦对突变特异性肥厚性心肌病的疗效:一种为精准医学提供信息的计算机方法
Pub Date : 2021-09-13 DOI: 10.23919/cinc53138.2021.9662736
F. Margara, B. Rodríguez, Christopher N Toepfer, A. Bueno-Orovio
Hypertrophic cardiomyopathy (HCM) is a common genetic heart disease characterised by hyperdynamic contraction and slowed relaxation. It has been proposed that cellular hypercontractility can derive from mutations that destabilise the energy-conserving myosin super relaxed state, SRX. A new drug, Mavacamten, has been shown to re-stabilise myosin SRX. Here we develop a human-based in-silico model to investigate how disease and drug-induced SRX changes alter cardiac contractility. We do this to mechanistically investigate how Mavacamten restores function in a HCM causing mutation. Our simulations show that hypercontractility is accounted for by an increased availability of crossbridges due to a reduced abundance of myosin SRX, but cellular diastolic dysfunction is only recapitulated if there is a direct crossbridge contribution to thin filament activation. Our model replicates reduced cellular contractility with Mavacamten treatment, which also rescues the hypercontractile phenotype in HCM Our model demonstrates that Mavacamten is effective in correcting HCM abnormalities caused by mutations that destabilise SRX. However, genotypes that cause HCM via other molecular pathways may be incompletely salvaged by Mavacamten.
肥厚性心肌病(HCM)是一种常见的遗传性心脏病,其特征是高动力收缩和松弛缓慢。有人提出,细胞的高收缩性可能源于破坏能量保存型肌球蛋白超松弛状态(SRX)的突变。一种新药Mavacamten已被证明可以重新稳定肌球蛋白SRX。在这里,我们开发了一个基于人类的硅模型来研究疾病和药物诱导的SRX变化如何改变心脏收缩力。我们这样做是为了机械地研究Mavacamten如何在HCM引起的突变中恢复功能。我们的模拟表明,由于肌球蛋白SRX丰度的降低,交叉桥的可用性增加,导致了过度收缩,但只有当交叉桥直接导致细丝激活时,细胞舒张功能障碍才会重现。我们的模型复制了Mavacamten治疗降低的细胞收缩性,这也挽救了HCM中的过度收缩表型。我们的模型表明,Mavacamten可以有效纠正由破坏SRX稳定的突变引起的HCM异常。然而,通过其他分子途径引起HCM的基因型可能无法完全被Mavacamten挽救。
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引用次数: 3
期刊
2021 Computing in Cardiology (CinC)
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