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Generation and characterization of Chd7-iCreERT2-tdTomato mice Chd7-iCreERT2-tdTomato小鼠的产生和表征。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-22 DOI: 10.1002/dvg.23575
Zi'ang Han, Ze Wang, Zhuxi Huang, Weijun Feng

Heterozygous mutation of CHD7 gene causes a severe developmental disorder called CHARGE syndrome. In order to further explore the expression and function of Chd7 in vivo, we generated a Chd7-P2A-iCreERT2-P2A-tdTomato (in short, Chd7-CT-tdT) knockin mouse line using the CRISPR/Cas9 technology. The specificity and efficiency of two knockin genetic elements were validated. The Chd7-CT-tdT reporter gene could accurately reflect both the dynamic expression pattern of endogenous Chd7 during neurodevelopment and cell-type specific expression in the brain and eye. The recombination efficiency of Chd7-CT-tdT in postnatal cerebellum is very high. Moreover, lineage tracing experiment showed that Chd7 is expressed in intestinal stem cells. In summary, the newly constructed Chd7-CT-tdT mouse line provide a useful tool to study the function of Chd7.

CHD7基因的杂合突变会导致严重的发育障碍,称为CHARGE综合征。为了进一步探索Chd7在体内的表达和功能,我们利用CRISPR/Cas9技术构建了Chd7- p2a - icreert2 - p2a - tdtomato(简称Chd7- ct - tdt)敲入小鼠细胞系。验证了两个敲入基因元件的特异性和效率。Chd7- ct - tdt报告基因既能准确反映内源性Chd7在神经发育过程中的动态表达模式,又能准确反映脑、眼细胞类型特异性表达。Chd7-CT-tdT在出生后小脑中的重组效率非常高。此外,谱系追踪实验表明Chd7在肠干细胞中表达。综上所述,新构建的Chd7- ct - tdt小鼠系为研究Chd7的功能提供了有益的工具。
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引用次数: 0
Unveiling the impact of DNA methylation machinery: Dnmt1 and Dnmt3a in orchestrating oocyte development and cellular homeostasis 揭示DNA甲基化机制的影响:Dnmt1和Dnmt3a在协调卵母细胞发育和细胞稳态中的作用。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-20 DOI: 10.1002/dvg.23579
Fatma Uysal, Gozde Sukur, Nazlican Bozdemir, Ozgur Cinar

DNA methylation can be considered the most prominent in controlling the gene expression responsible for the balance between cell proliferation and cell death. In this study, we aimed to analyze the distinct contributions of Dnmt1 and Dnmt3a enzymes in oocyte maturation, survival, autophagy, reactive oxygen species (ROS) production, and compensation capacity of Dnmt3b and Dnmt3l enzymes in mouse oocytes. Following confirming the suppression of Dnmt1or Dnmt3a through siRNA application, the assessment involved immunofluorescence staining for Dnmts, 5mC, p62, and ROS levels. Cell death rates showed a noticeable increase while oocyte maturation rates exhibited significant reduction. Global DNA methylation showed a decline, concomitant with elevated p62 and ROS levels upon Dnmt1 or Dnmt3a knockdown. Remarkably, silencing of Dnmt1 led to an upsurge in Dnmt3a expression, whereas Dnmt3a knockdown triggered an increase in Dnmt1 levels. Furthermore, Dnmt3l expression exhibited a notable decrease after silencing of either Dnmt1 or Dnmt3a, while Dnmt3b levels remained comparable between control and siRNA-treated groups. Collectively, this study underscores the pivotal roles of Dnmt1 and Dnmt3a in orchestrating various facets of oocyte development, encompassing maturation, survival, autophagy, and ROS production. These findings offer valuable insights into the intricate regulatory network governed by DNA methylation machinery within the context of oocyte physiology.

DNA甲基化可以被认为是控制负责细胞增殖和细胞死亡之间平衡的基因表达的最突出的因素。在本研究中,我们旨在分析Dnmt1和Dnmt3a酶在小鼠卵母细胞成熟、存活、自噬、活性氧(ROS)产生和Dnmt3b和dnmt31酶的补偿能力中的不同贡献。在通过siRNA应用确认dnmt1或Dnmt3a的抑制后,评估涉及Dnmts、5mC、p62和ROS水平的免疫荧光染色。细胞死亡率明显升高,而卵母细胞成熟率明显降低。Dnmt1或Dnmt3a敲低后,整体DNA甲基化水平下降,同时p62和ROS水平升高。值得注意的是,Dnmt1的沉默导致Dnmt3a表达的增加,而Dnmt3a敲低则引发Dnmt1水平的增加。此外,在Dnmt1或Dnmt3a沉默后,Dnmt3l的表达明显下降,而Dnmt3b的水平在对照组和sirna处理组之间保持相当。总的来说,这项研究强调了Dnmt1和Dnmt3a在协调卵母细胞发育的各个方面的关键作用,包括成熟、存活、自噬和ROS产生。这些发现为卵母细胞生理学背景下DNA甲基化机制所控制的复杂调控网络提供了有价值的见解。
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引用次数: 0
Bop1 is required to establish precursor domains of craniofacial tissues Bop1是颅面组织前体结构域建立所必需的。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-16 DOI: 10.1002/dvg.23580
Stephanie Keer, Karen M. Neilson, Helene Cousin, Himani D. Majumdar, Dominique Alfandari, Steven L. Klein, Sally A. Moody

Bop1 can promote cell proliferation and is a component of the Pes1-Bop1-WDR12 (PeBoW) complex that regulates ribosomal RNA processing and biogenesis. In embryos, however, bop1 mRNA is highly enriched in the neural plate, cranial neural crest and placodes, and potentially may interact with Six1, which also is expressed in these tissues. Recent work demonstrated that during development, Bop1 is required for establishing the size of the tadpole brain, retina and cranial cartilages, as well as controlling neural tissue gene expression levels. Herein, we extend this work by assessing the effects of Bop1 knockdown at neural plate and larval stages. Loss of Bop1 expanded neural plate gene expression domains (sox2, sox11, irx1) and reduced neural crest (foxd3, sox9), placode (six1, sox11, irx1, sox9) and epidermal (dlx5) expression domains. At larval stages, Bop1 knockdown reduced the expression of several otic vesicle genes (six1, pax2, irx1, sox9, dlx5, otx2, tbx1) and branchial arch genes that are required for chondrogenesis (sox9, tbx1, dlx5). The latter was not the result of impaired neural crest migration. Together these observations indicate that Bop1 is a multifunctional protein that in addition to its well-known role in ribosomal biogenesis functions during early development to establish the craniofacial precursor domains.

Bop1可以促进细胞增殖,并且是Pes1-Bop1-WDR12 (PeBoW)复合物的一个组成部分,该复合物调节核糖体RNA加工和生物发生。然而,在胚胎中,bop1 mRNA在神经板、颅神经嵴和基板中高度富集,并可能与Six1相互作用,Six1也在这些组织中表达。最近的研究表明,在蝌蚪的发育过程中,Bop1是决定蝌蚪大脑、视网膜和颅软骨大小以及控制神经组织基因表达水平所必需的。在这里,我们通过评估Bop1敲低在神经板和幼虫期的影响来扩展这项工作。Bop1的缺失扩大了神经板基因表达域(sox2, sox11, irx1),减少了神经嵴基因表达域(foxd3, sox9),基板基因表达域(six1, sox11, irx1, sox9)和表皮基因表达域(dlx5)。在幼虫期,Bop1敲低降低了几个耳泡基因(six1、pax2、irx1、sox9、dlx5、otx2、tbx1)和软骨形成所需的鳃弓基因(sox9、tbx1、dlx5)的表达。后者不是神经嵴迁移受损的结果。这些观察结果表明,Bop1是一种多功能蛋白,除了在核糖体生物发生中众所周知的作用外,它还在早期发育过程中起着建立颅面前体结构域的作用。
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引用次数: 0
EMT and primary ciliogenesis: For better or worse in sickness and in health EMT和原发性纤毛生成:无论疾病和健康状况如何。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-09 DOI: 10.1002/dvg.23568
Camille E. Tessier, Aurore M. M. Dupuy, Thomas Pelé, Philippe P. Juin, Jacqueline A. Lees, Vincent J. Guen

Epithelial-mesenchymal transition (EMT) and primary ciliogenesis are two cell-biological programs that are essential for development of multicellular organisms and whose abnormal regulation results in many diseases (i.e., developmental anomalies and cancers). Emerging studies suggest an intricate interplay between these two processes. Here, we discuss physiological and pathological contexts in which their interconnections promote normal development or disease progression. We describe underlying molecular mechanisms of the interplay and EMT/ciliary signaling axes that influence EMT-related processes (i.e., stemness, motility and invasion). Understanding the molecular and cellular mechanisms of the relationship between EMT and primary ciliogenesis may provide new insights in the etiology of diseases related to EMT and cilia dysfunction.

上皮-间充质转化(EMT)和初级纤毛生成是多细胞生物发育所必需的两个细胞生物学程序,其异常调节会导致许多疾病(即发育异常和癌症)。新出现的研究表明,这两个过程之间存在着复杂的相互作用。在这里,我们讨论了它们之间的相互联系促进正常发展或疾病进展的生理和病理背景。我们描述了相互作用的潜在分子机制和影响EMT相关过程(即干性、运动性和侵袭性)的EMT/纤毛信号轴。了解EMT与原发性纤毛形成之间关系的分子和细胞机制,可能为EMT和纤毛功能障碍相关疾病的病因提供新的见解。
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引用次数: 0
Signals, grids, and geometry: In pursuit of understanding cell fate switches. 信号、网格和几何:追求对细胞命运开关的理解。
IF 2.4 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-01 Epub Date: 2023-09-15 DOI: 10.1002/dvg.23546
Clare Hudson
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引用次数: 0
Tunicate Eco-Evo-Devo laboratory in IMS-METU. 位于 IMS-METU 的 Tunicate Eco-Evo-Devo 实验室。
IF 2.4 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-01 Epub Date: 2023-07-11 DOI: 10.1002/dvg.23536
Arzu Karahan

I completed my undergraduate education in Atatürk University, Education Faculty, Biology Department. Then pursued my graduate education at the Biology Department of Mersin University. Both my master's and PhD theses were on the biological and population genetics features of various fish species. My initial encounter with tunicates dates back to my Postdoc at Israel Oceanographic and Limnologic Research Institute (IOLR) in 2011, where I was working on a DNA barcoding project. During that time, the entire institute was actively engaged in research on tunicates, and discussions during lunchtime often revolved around this fascinating group of organisms. Prof. Rinkevich usually only spoke seriously about tunicate biology but 1 day he told me "You know Botryllus schlosseri is riding horse in Black Sea coasts of Turkiye." I was totally surprised and was trying to understand the meaning of this comment from a scientific perspective. He then showed me the picture of a B. schlosseri colony attached to a seahorse. Following several more Postdoc experiences, I began working as a Principal Investigator at Institute of Marine Sciences, Middle East Technical University (IMS-METU) in 2017. Since then, my team and I have been working on tunicate biodiversity, evolutionary biology, genomics, DNA barcoding, metabarcoding, metabolomics, whole-body regeneration (WBR) and aging related pathways.

我在阿塔图尔克大学教育学院生物系完成了本科教育。之后在梅尔辛大学生物系攻读研究生。我的硕士和博士论文都是关于各种鱼类的生物学和种群遗传学特征。2011 年,我在以色列海洋和湖泊研究所(IOLR)做博士后,从事 DNA 条形码项目。在那段时间里,整个研究所都在积极从事鳞栉水母的研究,午餐时间的讨论也经常围绕着这组迷人的生物展开。林克维奇教授通常只会严肃地谈论鳞甲生物学,但有一天他告诉我:"你知道Botryllus schlosseri正在土耳其黑海沿岸骑马吗?我非常惊讶,并试图从科学角度理解这句话的含义。然后,他给我看了一张 B. schlosseri 群落附着在海马身上的照片。又有了几次博士后经历之后,我于2017年开始在中东技术大学海洋科学研究所(IMS-METU)担任首席研究员。从那时起,我和我的团队一直致力于鳞栉水母生物多样性、进化生物学、基因组学、DNA 条形码、代谢组学、全身再生(WBR)和衰老相关途径的研究。
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引用次数: 0
Beryl Iris Brewin (1910-1999)-Accomplished New Zealand scientist and promoter of marine science. Beryl Iris Brewin(1910-1999 年)--杰出的新西兰科学家和海洋科学促进者。
IF 2.4 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-01 Epub Date: 2023-08-30 DOI: 10.1002/dvg.23533
Megan J Wilson
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引用次数: 0
Building hearts for undergraduate research with tunicates. 用石斑鱼为本科生的研究工作凝聚人心。
IF 2.4 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-01 Epub Date: 2023-08-16 DOI: 10.1002/dvg.23535
Heather J Evans Anderson
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引用次数: 0
Regulatory mechanisms for sperm chemotaxis and flagellar motility. 精子趋化和鞭毛运动的调控机制
IF 2.4 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-01 Epub Date: 2023-09-12 DOI: 10.1002/dvg.23549
Kogiku Shiba
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引用次数: 0
The molecular basis of ascidian whole body regeneration. 腹足类全身再生的分子基础。
IF 2.4 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-11-01 Epub Date: 2023-07-14 DOI: 10.1002/dvg.23537
Megan J Wilson
{"title":"The molecular basis of ascidian whole body regeneration.","authors":"Megan J Wilson","doi":"10.1002/dvg.23537","DOIUrl":"10.1002/dvg.23537","url":null,"abstract":"","PeriodicalId":12718,"journal":{"name":"genesis","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10029937","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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