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Impact of early blood purification on serum inflammatory mediators and hemorheology in severe acute pancreatitis. 早期血液净化对重症急性胰腺炎患者血清炎症介质和血液流变学的影响。
IF 2.5 3区 生物学 Pub Date : 2025-09-29 DOI: 10.1186/s41065-025-00538-w
Jing Xiao, Bo Li

Background: Patients with severe acute pancreatitis (SAP) often experience systemic inflammatory responses and microcirculatory disturbances, for which existing treatments have limited intervention effects.

Objectives: It aimed to investigate the impact of early blood purification on serum inflammatory mediators, hemorheological parameters, and clinical prognosis in patients with SAP.

Methods: 120 patients with SAP were randomly grouped: observation group (OG) (routine treatment + early continuous veno-venous hemodiafiltration) and control group (CG) (routine treatment). The time to clinical symptom improvement, hemorheological parameters [whole blood viscosity (WBV), plasma viscosity (PV), hematocrit, and platelet adhesion rate], and inflammatory mediators were compared. Multivariate logistic regression analysis (MLRA) was used to identify prognostic factors.

Results: The OG had markedly shorter times to symptom relief for fever, abdominal pain, and abdominal distension (all P < 0.001) and a higher cure rate (P = 0.012); The levels of C-reactive protein (CRP), tumor necrosis factor-α (TNF-α), interleukin-6 (IL-6), as well as WBV and PV, were more markedly improved (all P < 0.01). Multivariate analysis suggested that peak CRP (OR = 1.01, P < 0.001) and peak TNF-α (OR = 1.02, P = 0.003) maintained independent predictive value, and all hemorheological parameters were confirmed as independent prognostic factors.

Conclusion: Early blood purification can effectively improve the inflammatory response and hemodynamics in patients with SAP, with its efficacy influenced by multiple factors, including disease severity, intensity of inflammatory response, and hemorheological status.

Clinical trial number: Not applicable.

背景:重症急性胰腺炎(SAP)患者经常出现全身炎症反应和微循环紊乱,现有治疗方法的干预效果有限。目的:探讨早期血液净化对SAP患者血清炎症介质、血液流变学参数及临床预后的影响。方法:120例SAP患者随机分为观察组(OG)(常规治疗+早期持续静脉-静脉血液扩张滤过)和对照组(CG)(常规治疗)。比较两组临床症状改善时间、血液流变学参数[全血粘度(WBV)、血浆粘度(PV)、红细胞压积、血小板黏附率]和炎症介质。采用多因素logistic回归分析(MLRA)确定预后因素。结论:早期血液净化可有效改善SAP患者的炎症反应和血流动力学,其疗效受疾病严重程度、炎症反应强度、血液流变学状况等多种因素的影响。临床试验号:不适用。
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引用次数: 0
Shenling Baizhu San attenuates testicular spermatogenic dysfunction in hyperuricemic mice via dual modulation of MAPK/NF-κB and NLRP3 inflammasome pathways. 参苓白术散通过双重调节MAPK/NF-κB和NLRP3炎症小体通路减轻高尿酸血症小鼠睾丸生精功能障碍。
IF 2.5 3区 生物学 Pub Date : 2025-09-29 DOI: 10.1186/s41065-025-00553-x
Xiaocui Jiang, Zhongyi Zhu, Qi Liu, Xingyu Jiang, Zihao Liu, Shuang Li, Jigang Cao, Min Xiao

Context: Hyperuricemia (HUA) is a known factor contributing to testicular spermatogenic dysfunction. Shenling Baizhu San (SLBZS), a traditional Chinese medicine compound, has demonstrated efficacy in reducing uric acid levels. However, its specific impact on testicular spermatogenic function in mice with HUA remains unclear.

Objective: To investigate the impact and mechanism of SLBZS on testicular spermatogenic function in HUA mice.

Materials and methods: A hyperuricemia-induced spermatogenic dysfunction model was created by administering intraperitoneal injections of potassium oxonate (600 mg/kg/d) for seven days. Following model establishment, 48 Balb/c mice were randomly divided into six groups: control, model, low-dose SLBZS (5.04 g/kg/d), medium-dose SLBZS (10.07 g/kg/d), high-dose SLBZS (20.14 g/kg/d), and febuxostat (10 mg/kg/d). All groups, except the control, underwent model induction, followed by specific interventions. Subsequent analyses included serum uric acid levels, testicular and epididymal indices, histopathological assessments, sperm quality, oxidative stress and inflammation markers, and the expression of proteins related to apoptosis and inflammation signaling pathways.

Results: SLBZS markedly enhanced sperm quality, testicular and epididymal indices, and serum uric acid levels in mice, while ameliorating histopathological lesions in testicular tissue. Additionally, SLBZS significantly reduced oxidative stress, serum inflammation markers, and testicular cell apoptosis, with the high-dose group showing superior effects compared to the febuxostat group. Further investigation revealed that SLBZS inhibited the expression and phosphorylation of proteins in the MAPK/NF-κB pathway and suppressed the expression of proteins in the NLRP3 inflammasome pathway.

Discussion and conclusions: SLBZS potentially modulates the MAPK/NF-κB and NLRP3 inflammasome signaling pathways, thereby suppressing inflammatory responses and enhancing spermatogenesis in the testes of HUA mice.

背景:高尿酸血症(HUA)是导致睾丸生精功能障碍的已知因素。参龄白珠散(SLBZS)是一种中药复方,具有降低尿酸水平的功效。然而,其对HUA小鼠睾丸生精功能的具体影响尚不清楚。目的:探讨SLBZS对HUA小鼠睾丸生精功能的影响及其机制。材料与方法:通过腹腔注射氧酸钾(600 mg/kg/d) 7 d建立高尿酸血症致生精功能障碍大鼠模型。建立模型后,将48只Balb/c小鼠随机分为对照组、模型组、低剂量SLBZS (5.04 g/kg/d)、中剂量SLBZS (10.07 g/kg/d)、高剂量SLBZS (20.14 g/kg/d)、非布司他(10 mg/kg/d) 6组。除对照组外,所有组均进行模型诱导,然后进行特定干预。随后的分析包括血清尿酸水平、睾丸和附睾指数、组织病理学评估、精子质量、氧化应激和炎症标志物,以及与细胞凋亡和炎症信号通路相关的蛋白质表达。结果:SLBZS显著提高小鼠精子质量、睾丸和附睾指数、血清尿酸水平,改善睾丸组织病理损害。此外,SLBZS显著降低氧化应激、血清炎症标志物和睾丸细胞凋亡,且高剂量组效果优于非布司他组。进一步研究发现,SLBZS抑制MAPK/NF-κB通路蛋白的表达和磷酸化,抑制NLRP3炎症小体通路蛋白的表达。讨论与结论:SLBZS可能调节MAPK/NF-κB和NLRP3炎症小体信号通路,从而抑制HUA小鼠睾丸的炎症反应,促进精子发生。
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引用次数: 0
HOXB13 affects the cancer stem cell characteristics of nasopharyngeal carcinoma by regulating the Wnt/β-catenin/SOX2 pathway. HOXB13通过调控Wnt/β-catenin/SOX2通路影响鼻咽癌的肿瘤干细胞特性。
IF 2.5 3区 生物学 Pub Date : 2025-09-29 DOI: 10.1186/s41065-025-00549-7
Ying Xu, Xia Li

Purpose: HOXB13 has been shown to act as a tumor promoter in various malignancies; however, its role in nasopharyngeal carcinoma (NPC) remains unexplored. This study aimed to investigate the function of HOXB13 in NPC and elucidate its underlying mechanism to identify novel targets for NPC diagnosis and therapy.

Methods: HOXB13 expression in NPC was examined through bioinformatic analyses of the TCGA and GEO databases, and the findings were validated using molecular biology techniques. After the transfection of NPC cell lines with siRNA targeting HOXB13 (si-HOXB13), the effects of HOXB13 knockdown on cell proliferation, migration, invasion, and stemness were evaluated. Expression levels of Wnt/β-catenin/SOX2 pathway-related proteins were assessed. In vivo, NPC cells transfected with sh-HOXB13 were injected into nude mice, after which tumor volume and mass were measured, and lung metastases were analyzed using hematoxylin and eosin (H&E) staining.

Results: HOXB13 knockdown significantly reduced NPC cell viability, suppressed clonogenicity and invasiveness, increased scratch width in wound healing assays, and decreased sphere formation and the proportion of CD133+ cells. Additionally, si-HOXB13 significantly downregulated the protein expression of β-catenin, c-Myc, and SOX2. In vivo, the sh-HOXB13 group exhibited reduced tumor mass, volume and lung metastatic nodules compared to the sh-NC group.

Conclusion: This study demonstrates that HOXB13 facilitates the malignant progression of NPC by regulating the Wnt/β-catenin/SOX2 signaling pathway, suggesting HOXB13 as a potential therapeutic and diagnostic target for NPC, thereby offering a new strategy to improve patient prognosis.

目的:HOXB13已被证明在多种恶性肿瘤中起肿瘤启动子的作用;然而,其在鼻咽癌(NPC)中的作用尚不清楚。本研究旨在探讨HOXB13在鼻咽癌中的功能,阐明其潜在机制,为鼻咽癌的诊断和治疗寻找新的靶点。方法:通过TCGA和GEO数据库的生物信息学分析,检测HOXB13在鼻咽癌中的表达,并利用分子生物学技术对结果进行验证。将靶向HOXB13的siRNA (si-HOXB13)转染鼻咽癌细胞系后,评估敲低HOXB13对细胞增殖、迁移、侵袭和干性的影响。评估Wnt/β-catenin/SOX2通路相关蛋白的表达水平。在体内,将转染sh-HOXB13的鼻咽癌细胞注射到裸鼠体内,测量肿瘤体积和质量,并用苏木精和伊红(H&E)染色分析肺转移情况。结果:HOXB13基因敲低可显著降低鼻咽癌细胞活力,抑制克隆原性和侵袭性,增加创面愈合实验中的划痕宽度,减少球形形成和CD133+细胞比例。此外,si-HOXB13显著下调β-catenin、c-Myc和SOX2的蛋白表达。在体内,与sh-NC组相比,sh-HOXB13组的肿瘤质量、体积和肺转移结节均有所减少。结论:本研究表明HOXB13通过调控Wnt/β-catenin/SOX2信号通路促进鼻咽癌恶性进展,提示HOXB13可能是鼻咽癌治疗和诊断的潜在靶点,为改善患者预后提供了新的策略。
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引用次数: 0
Investigating the effect of tenuigenin on LPS-induced HPMEC dysfunction by inhibiting SRC activation based on network pharmacology and molecular docking. 基于网络药理学和分子对接研究黄芩苷通过抑制SRC激活对lps诱导的HPMEC功能障碍的影响。
IF 2.5 3区 生物学 Pub Date : 2025-09-29 DOI: 10.1186/s41065-025-00574-6
Jingchao Chen, Hao Pan, Jinchun Wang, Jing Han, Weihui Ma

Background: Adult pneumonia is an infectious lung disease caused by bacteria, viruses, or other microorganisms and exhibits some degree of contagion. Tenuigenin, a bioactive compound derived from Polygala tenuifolia, possesses broad pharmacological effects, but its role in adult pneumonia remains incompletely understood.

Methods: Bioinformatics and database analysis were employed to screen and analyze the Tenuigenin target genes relevant to adult pneumonia. Cell functions were assessed using cell counting kit-8 (CCK8), 5-ethynyl-2'-deoxyuridine (EdU) staining, transwell, tube formation, Fluo-4 calcium assay, and transepithelial electrical resistance (TER) assays. Protein levels were measured by western blot. Network pharmacology and molecular docking were employed to screen core target genes and verify binding interactions.

Results: Tenuigenin targets in adult pneumonia were enriched in the pathways related to vascular permeability and calcium signaling. Tenuigenin mitigated lipopolysaccharide (LPS)-induced impairment of human pulmonary microvascular endothelial cell (HPMEC) viability, proliferation, migration, and angiogenesis, while attenuating LPS-induced increases in apoptosis, calcium ion, and reactive oxygen species (ROS) levels. Besides, Tenuigenin also attenuated the TER decrease and permeability increase caused by LPS exposure in HPMECs. Network pharmacology and molecular docking identified steroid receptor coactivator (SRC) as a core target of Tenuigenin, demonstrating binding to specific SRC amino acid residues. Tenuigenin also reduced LPS-induced increase in phosphor-SRC (p-SRC) expression. Crucially, after inhibition of SRC kinase activity, Tenuigenin no longer exerted significant protective effects against LPS-induced HPMEC injury and dysfunction.

Conclusion: Tenuigenin alleviates LPS-induced injury and dysfunction of HPMECs by targeting the SRC pathway, providing a target for managing adult pneumonia.

背景:成人肺炎是一种由细菌、病毒或其他微生物引起的传染性肺部疾病,具有一定程度的传染性。Tenuigenin是一种从tenuifolia中提取的生物活性化合物,具有广泛的药理作用,但其在成人肺炎中的作用仍不完全清楚。方法:采用生物信息学和数据库分析的方法,筛选和分析与成人肺炎相关的Tenuigenin靶基因。使用细胞计数试剂盒-8 (CCK8)、5-乙基-2'-脱氧尿苷(EdU)染色、transwell、试管形成、Fluo-4钙测定和上皮电阻(TER)测定来评估细胞功能。western blot检测蛋白水平。利用网络药理学和分子对接技术筛选核心靶基因,验证结合相互作用。结果:Tenuigenin在成人肺炎中的靶点在血管通透性和钙信号通路中富集。Tenuigenin减轻了脂多糖(LPS)诱导的人肺微血管内皮细胞(HPMEC)活力、增殖、迁移和血管生成的损伤,同时减弱了LPS诱导的细胞凋亡、钙离子和活性氧(ROS)水平的增加。此外,Tenuigenin还能减轻LPS引起的hpmes的TER减少和通透性增加。网络药理学和分子对接发现类固醇受体共激活因子(SRC)是Tenuigenin的核心靶点,并与特定的SRC氨基酸残基结合。Tenuigenin还降低了lps诱导的磷酸化src (p-SRC)表达的增加。至关重要的是,在抑制SRC激酶活性后,Tenuigenin对lps诱导的HPMEC损伤和功能障碍不再具有显著的保护作用。结论:Tenuigenin通过靶向SRC通路减轻lps诱导的hpmec损伤和功能障碍,为治疗成人肺炎提供了靶点。
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引用次数: 0
Why Hereditas leads hereditary cancer awareness now more than ever. 为什么Hereditas现在比以往任何时候都更能引起人们对遗传性癌症的关注。
IF 2.5 3区 生物学 Pub Date : 2025-09-29 DOI: 10.1186/s41065-025-00556-8
Julhash U Kazi, Ramin Massoumi
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引用次数: 0
C-X-C chemokine receptor family genes in osteosarcoma: expression profiles, regulatory networks, and functional impact on tumor progression. 骨肉瘤中的C-X-C趋化因子受体家族基因:表达谱、调控网络和对肿瘤进展的功能影响
IF 2.5 3区 生物学 Pub Date : 2025-09-29 DOI: 10.1186/s41065-025-00569-3
Siqi Dong, Han Xu, Xianglei Kong, Yanchang Bai, Xijun Hou, Fei Liu, Yan Xu

In this comprehensive study, we explored the molecular landscape C-X-C chemokine receptor (CXCR) family genes (CXCR1, CXCR2, CXCR3, CXCR4, CXCR5, and CXCR7) in osteosarcoma (OS) by scrutinizing the expression profiles and functional implications using Bioinformatics analyses and molecular experiments. We found significant up-regulation of these genes in OS cell lines compared to control cell lines, as assessed by RT-qPCR, with high diagnostic potential demonstrated by receiver operating characteristic (ROC) curve analysis. Cross-validation using the GSE12865 dataset revealed consistent up-regulation of CXCR family genes in OS samples, alongside decreased promoter methylation in tumor samples compared to normal tissues, as confirmed by the UALCAN database. Mutational analysis, conducted using data from 237 OS samples from the cBioPortal database, revealed minimal mutations in CXCR1 and CXCR2, with no alterations in CXCR3, CXCR4, CXCR5, and CXCR7. Copy number variation (CNV) analysis showed some level of amplification in CXCR1 and CXCR2, but no significant alterations in the copy numbers of the other genes. Survival analysis using meta-analysis across multiple independent studies showed that the expression of some CXCR genes were significantly associated with poor patient survival. Further exploration of the transcriptional regulation of CXCR genes using the ENCORI database revealed an intricate miRNA-mRNA network involving miR-130a, miR-146a, miR-155, miR-21, and miR-7, which regulate the expression of these genes. Elevated expression of these miRNAs in OS samples was validated by RT-qPCR, with promising diagnostic potential highlighted by ROC analysis. Additionally, the immunological analysis revealed a positive correlation between the expressions of CXCR genes and immune cell types, including macrophages and T cells, and CXCR genes were found to enhance drug responsiveness in OS patients. Gene enrichment analysis identified critical biological processes and pathways, such as chemokine-mediated signaling and immune response, linked to the CXCR family. Knockdown of CXCR1 in HOS and MG-63 cells confirmed that CXCR1 plays a crucial role in cell proliferation, colony formation, and migration. CXCR1 knockdown significantly reduced cell proliferation and colony formation, while enhancing cell migration, underscoring its functional importance in OS progression. Overall, our findings suggest that the CXCR family genes are potential diagnostic and prognostic markers in OS, with implications for therapeutic targeting and further investigation into their role in OS pathogenesis.

在这项全面的研究中,我们通过生物信息学分析和分子实验,探讨了C-X-C趋化因子受体(CXCR)家族基因(CXCR1、CXCR2、CXCR3、CXCR4、CXCR5和CXCR7)在骨肉瘤(OS)中的表达谱和功能意义。我们发现,与对照细胞系相比,这些基因在OS细胞系中显著上调,经RT-qPCR评估,受试者工作特征(ROC)曲线分析显示具有很高的诊断潜力。使用GSE12865数据集进行交叉验证显示,与正常组织相比,肿瘤样本中CXCR家族基因在OS样本中一致上调,同时启动子甲基化降低,这一点得到了UALCAN数据库的证实。利用来自cbiopportal数据库的237个OS样本数据进行的突变分析显示,CXCR1和CXCR2的突变极小,而CXCR3、CXCR4、CXCR5和CXCR7的突变无变化。拷贝数变异(CNV)分析显示,CXCR1和CXCR2基因有一定程度的扩增,而其他基因的拷贝数无明显变化。通过对多个独立研究的荟萃分析,生存分析显示一些CXCR基因的表达与较差的患者生存显著相关。使用ENCORI数据库进一步探索CXCR基因的转录调控揭示了一个复杂的miRNA-mRNA网络,涉及miR-130a, miR-146a, miR-155, miR-21和miR-7,它们调节这些基因的表达。通过RT-qPCR验证了这些mirna在OS样本中的表达升高,ROC分析强调了它们具有良好的诊断潜力。此外,免疫学分析显示CXCR基因的表达与免疫细胞类型(包括巨噬细胞和T细胞)呈正相关,并且发现CXCR基因增强了OS患者的药物反应性。基因富集分析确定了与CXCR家族相关的关键生物学过程和途径,如趋化因子介导的信号传导和免疫反应。在HOS和MG-63细胞中表达CXCR1的下调证实了CXCR1在细胞增殖、集落形成和迁移中起着至关重要的作用。CXCR1敲低显著降低细胞增殖和集落形成,同时增强细胞迁移,强调其在OS进展中的功能重要性。总的来说,我们的研究结果表明,CXCR家族基因是OS的潜在诊断和预后标志物,对治疗靶向和进一步研究其在OS发病机制中的作用具有重要意义。
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引用次数: 0
Qushi huayu decoction dose-dependent inhibition of caspase-2/SREBP-1 in MASLD mice. 祛湿化瘀汤对MASLD小鼠caspase-2/SREBP-1的剂量依赖性抑制作用。
IF 2.5 3区 生物学 Pub Date : 2025-09-29 DOI: 10.1186/s41065-025-00561-x
Qian Liu, Zuxi Gu, Xin Xin, Xiaoping Shen, Xiaojun Gou, Lixin Hou, Shuang Li

Background: Metabolic Dysfunction-Associated Steatotic Liver Disease (MASLD) is characterized by hepatic lipid accumulation and metabolic disturbances. Caspase-2 cleaves site-1 protease (S1P), leading to the persistent activation of sterol regulatory element-binding proteins (SREBPs), which subsequently promote the progression of MASLD. Previous studies have demonstrated that the Qushi Huayu Decoction (QHD) significantly alleviates MASLD, particularly inhibiting the expression of SREBP-1 in hepatocytes of MASLD mouse models. However, its regulatory effect on the Caspase-2/SREBP-1 pathway and the dose-dependent nature of these effects remain unclear.

Objective: The regulatory effects of high, medium, and low doses of Qushi Huayu Decoction (QHD) on the Caspase-2/SREBP-1 pathway and their potential dose-dependent impacts was investigated.

Method: A MASLD model was induced in 28-week-old C57BL/6J mice using a high-fat diet (HFD). Mice were treated with QHD granules at high (3.466 g/kg), medium (1.733 g/kg), and low doses (0.867 g/kg), as well as a Caspase-2 inhibitor for a duration of 5 weeks. Pharmacodynamic indicators, including triglycerides (TG) and free fatty acids (FFA) in liver tissue, hepatic histopathology, and serum biochemical markers, were assessed. The expression of genes in the Caspase-2/SREBP-1 signaling pathway and its downstream targets was also analyzed.

Results: QHD at all doses effectively improved hepatic steatosis. The low-dose group significantly reduced hepatic TG levels (p < 0.01) and the insulin resistance index (p < 0.05). The high-dose group significantly inhibited the expression of Caspase-2 protein (p < 0.01) and nuclear SREBP-1 protein (p < 0.05), with a dose-dependent decrease in Caspase-2 activity.

Conclusion: QHD exhibits dose-dependent, complementary effects in MASLD, with low doses improving lipid metabolism and insulin sensitivity, and high doses more effectively suppressing Caspase-2/SREBP-1 and inflammatory signaling. This dual action underscores its broad regulation of ER stress and supports stage-specific, hierarchical dosing strategies aligned with traditional Chinese medicine principles.

背景:代谢功能障碍相关脂肪变性肝病(MASLD)以肝脏脂质积累和代谢紊乱为特征。Caspase-2切割site-1蛋白酶(S1P),导致甾醇调节元件结合蛋白(SREBPs)的持续激活,从而促进MASLD的进展。既往研究表明,祛湿化瘀汤(QHD)能显著缓解MASLD,尤其能抑制MASLD小鼠模型肝细胞中SREBP-1的表达。然而,其对Caspase-2/SREBP-1通路的调控作用以及这些作用的剂量依赖性尚不清楚。目的:研究祛湿化瘀汤高、中、低剂量对Caspase-2/SREBP-1通路的调节作用及其剂量依赖性。方法:采用高脂饲料(HFD)建立28周龄C57BL/6J小鼠MASLD模型。小鼠分别接受高剂量(3.466 g/kg)、中剂量(1.733 g/kg)和低剂量(0.867 g/kg) QHD颗粒以及Caspase-2抑制剂治疗,持续5周。评估药效学指标,包括肝组织中的甘油三酯(TG)和游离脂肪酸(FFA)、肝脏组织病理学和血清生化指标。分析了Caspase-2/SREBP-1信号通路及其下游靶点基因的表达情况。结果:各剂量QHD均能有效改善肝脂肪变性。结论:QHD在MASLD中表现出剂量依赖的互补作用,低剂量可改善脂质代谢和胰岛素敏感性,高剂量可更有效地抑制Caspase-2/SREBP-1和炎症信号。这一双重作用强调了其对内质网应激的广泛调节,并支持与传统中医原则相一致的阶段性分层给药策略。
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引用次数: 0
Metabolic heterogeneity and survival outcomes in papillary renal cell carcinoma: insights from multi-datasets and machine learning analyses. 乳头状肾细胞癌的代谢异质性和生存结果:来自多数据集和机器学习分析的见解。
IF 2.5 3区 生物学 Pub Date : 2025-09-26 DOI: 10.1186/s41065-025-00571-9
Jian Hu, Yi-Heng Liu, Gui-Lian Xu, Ke-Qin Zhang

Background: Renal cell carcinoma is characterized by immune and metabolic alterations. These metabolic reprogramming processes enhance tumor cell proliferation and infiltration. The purpose of this study was to investigate the characteristics of metabolism-related molecules and to identify potential prognostic biomarkers in kidney renal papillary renal cell carcinoma (KIRP).

Methods: We conducted a comprehensive analysis of metabolism-related genes using weighted gene co-expression network analysis and differential expression analysis. Subsequently, we constructed a metabolism-related signature (MRS) by integrating 90 machine learning algorithms. Based on Cox regression analyses, we developed a predictive nomogram. Functional enrichment analysis, genomic variant analysis, chemotherapy response evaluation, and immune cell infiltration profiling were then performed among the MRS subtypes. Finally, the MRS was further examined at the single-cell level, and quantitative PCR and immunohistochemical staining were conducted to validate the key genes.

Results: We identified 16 differentially expressed metabolic genes. The random survival forest (RSF) emerged as the optimal machine learning model in the TCGA-KIRP and GSE2748 cohorts. The MRS demonstrated robust predictive performance, with an AUC of 0.989 for 5-year survival predictions. The risk score was significantly correlated with T stage and pathological stage and was identified as an independent prognostic factor. Patients in the high-risk group exhibited higher tumor mutation burdens and derived greater benefits from sunitinib, pazopanib, lenvatinib, and temsirolimus. A four-genes nomogram was then constructed to predict overall survival. PYCR1, INMT, and KIF20A were highly expressed in KIRP according to scRNA-seq analysis and were validated in vitro.

Conclusion: This study revealed the heterogeneity of metabolic molecules in KIRP and established a prognostic machine learning model that enhances risk stratification and may optimize chemotherapy strategies in the management of KIRP.

背景:肾细胞癌以免疫和代谢改变为特征。这些代谢重编程过程增强了肿瘤细胞的增殖和浸润。本研究的目的是探讨肾乳头状肾细胞癌(KIRP)代谢相关分子的特征,并确定潜在的预后生物标志物。方法:采用加权基因共表达网络分析和差异表达分析对代谢相关基因进行综合分析。随后,我们通过整合90种机器学习算法构建了代谢相关签名(MRS)。在Cox回归分析的基础上,我们开发了一个预测模态图。然后对MRS亚型进行功能富集分析、基因组变异分析、化疗反应评估和免疫细胞浸润分析。最后,在单细胞水平进一步检测MRS,并进行定量PCR和免疫组织化学染色,验证关键基因。结果:鉴定出16个差异表达的代谢基因。随机生存森林(RSF)在TCGA-KIRP和GSE2748队列中成为最佳机器学习模型。MRS显示出稳健的预测性能,5年生存预测的AUC为0.989。风险评分与T分期和病理分期有显著相关性,可作为独立的预后因素。高危组患者表现出更高的肿瘤突变负担,并从舒尼替尼、帕唑帕尼、lenvatinib和替西莫司中获得更大的获益。然后构建一个四基因图来预测总生存率。根据scRNA-seq分析,PYCR1、INMT和KIF20A在KIRP中高表达,并在体外验证。结论:本研究揭示了KIRP中代谢分子的异质性,并建立了预后机器学习模型,该模型可以增强KIRP的风险分层,并可能优化KIRP治疗的化疗策略。
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引用次数: 0
Cancer cell plasticity and therapeutic resistance: mechanisms, crosstalk, and translational perspectives. 癌细胞的可塑性和治疗耐药性:机制、相声和翻译观点。
IF 2.5 3区 生物学 Pub Date : 2025-09-26 DOI: 10.1186/s41065-025-00564-8
Saeid Ghorbian

Resistance to targeted cancer therapies is a significant barrier to favorable treatment outcomes. Malignant cells can tolerate and resist drug treatments due to their biological flexibility. Specifically, slow-cycling drug-resistant cells may achieve permanent resistance to the treatment or restore sensitivity upon cessation of therapy. Enhancing cancer treatment methodologies necessitates a deeper understanding of the adaptability of tumor cells. Drug resistance and cellular heterogeneity are closely associated with cancer cell adaptability. Alterations in cellular signaling, interactions with the tumor microenvironment, and genetic and epigenetic alterations are all implicated. Analyzing these pathways will enhance our understanding of how cancer cells evolve and evade treatment. Two effective strategies to address cancer cell adaptability are to target specific biological pathways and to employ combination therapies. The progression of cancer therapy methodologies relies on comprehending and exploring the concept of cancer cell adaptability. Understanding tumor heterogeneity and drug resistance necessitates identifying the cellular, molecular, and genetic processes that govern cancer cell plasticity. This understanding enables the development of more personalized and effective cancer therapies, leading to improved treatment outcomes. CLINICAL TRIAL NUMBER: Not applicable.

对靶向癌症治疗的耐药性是良好治疗结果的重要障碍。恶性肿瘤细胞由于其生物柔韧性,能够耐受和抵抗药物治疗。具体来说,缓慢循环的耐药细胞可能对治疗产生永久耐药性,或在停止治疗后恢复敏感性。提高癌症治疗方法需要对肿瘤细胞的适应性有更深入的了解。耐药和细胞异质性与癌细胞的适应性密切相关。细胞信号的改变,与肿瘤微环境的相互作用,以及遗传和表观遗传的改变都有牵连。分析这些途径将增强我们对癌细胞如何进化和逃避治疗的理解。针对特定的生物学途径和采用联合治疗是解决癌细胞适应性的两种有效策略。癌症治疗方法的进步依赖于对癌细胞适应性概念的理解和探索。了解肿瘤的异质性和耐药性需要确定控制癌细胞可塑性的细胞、分子和遗传过程。这种认识有助于开发更加个性化和有效的癌症治疗方法,从而改善治疗效果。临床试验编号:不适用。
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引用次数: 0
Analysis of spermidine's effect on coronary heart disease risk using bidirectional Mendelian randomization and LC-MS/MS. 应用双向孟德尔随机化和LC-MS/MS分析亚精胺对冠心病风险的影响。
IF 2.5 3区 生物学 Pub Date : 2025-09-26 DOI: 10.1186/s41065-025-00568-4
Tianyi Wang, Li Lin, Yaodong Ding, Yang Zhang, Zehao Zhao, Ruixiang Feng, Yingxuan Bai, Zhennan Li, Yuncong Shi, Na Li, Yong Zeng

Background: This study examines the causal relationship between spermidine levels and coronary artery disease (CHD) risk using a bidirectional Mendelian Randomization (MR) approach.

Methods: We employed genetic variants as instrumental variables to assess the influence of genetically predicted spermidine levels on CHD risk and vice versa. Data for the MR analysis were sourced from the UK Biobank and genome-wide association study datasets, focusing on single nucleotide polymorphisms (SNPs) associated with spermidine levels and CHD. The study also utilized liquid chromatography-tandem mass spectrometry (LC-MS/MS) for accurate quantification of spermidine in plasma samples.

Results: Our analysis identified a significant association between lower genetically predicted spermidine levels and increased CHD risk. The LC-MS/MS results supported the accurate measurement of spermidine, highlighting its feasibility as a clinical biomarker.

Conclusions: The findings suggest that reduced spermidine levels may be a significant risk factor for CHD. This study supports the potential of spermidine as a biomarker for CHD risk assessment and its development as a therapeutic target. The integration of genetic and biochemical methodologies enhances our understanding of the role of spermidine in cardiovascular health and its utility in managing CHD risk.

背景:本研究采用双向孟德尔随机化(MR)方法研究亚精胺水平与冠心病(CHD)风险之间的因果关系。方法:我们采用遗传变异作为工具变量来评估遗传预测亚精胺水平对冠心病风险的影响,反之亦然。MR分析数据来自UK Biobank和全基因组关联研究数据集,重点关注与亚精胺水平和冠心病相关的单核苷酸多态性(snp)。本研究还利用液相色谱-串联质谱(LC-MS/MS)对血浆样品中的亚精胺进行了准确定量分析。结果:我们的分析确定了遗传预测亚精胺水平较低与冠心病风险增加之间的显著关联。LC-MS/MS结果支持亚精胺的准确测量,突出了其作为临床生物标志物的可行性。结论:研究结果提示亚精胺水平降低可能是冠心病的重要危险因素。该研究支持亚精胺作为冠心病风险评估的生物标志物及其作为治疗靶点的潜力。遗传和生化方法的整合增强了我们对亚精胺在心血管健康中的作用及其在控制冠心病风险中的应用的理解。
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Hereditas
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