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Integrated Difference Autocorrelation: A Novel Approach to Estimate Shear Wave Speed in the Presence of Compression Waves 综合差分自相关:在存在压缩波的情况下估算剪切波速度的新方法。
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-20 DOI: 10.1109/TBME.2024.3464104
Hamidreza Asemani;Jannick P. Rolland;Kevin J. Parker
Objective: In shear wave elastography (SWE), the aim is to measure the velocity of shear waves, however unwanted compression waves and bulk tissue motion pose challenges in evaluating tissue stiffness. Conventional approaches often struggle to discriminate between shear and compression waves, leading to inaccurate shear wave speed (SWS) estimation. In this study, we propose a novel approach known as the integrated difference autocorrelation (IDA) estimator to accurately estimate reverberant SWS in the presence of compression waves and noise. Methods: The IDA estimator, unlike conventional techniques, computes the subtraction of velocity between neighboring particles, effectively minimizing the impact of long wavelength compression waves and other wide-area movements such as those caused by respiration. We evaluated the effectiveness of IDA by: (1) using k-Wave simulations of a branching cylinder in a soft background, (2) using ultrasound elastography on a breast phantom, (3) using ultrasound elastography in the human liver-kidney region, and (4) using magnetic resonance elastography (MRE) on a brain phantom. Results: By applying IDA to unfiltered contaminated wave fields of simulation and elastography experiments, the estimated SWSs are in good agreement with the ground truth values (i.e., less than 2% error for the simulation, 9% error for ultrasound elastography of the breast phantom and 19% error for MRE). Conclusion: Our results demonstrate that IDA accurately estimates SWS, revealing the existence of a lesion, even in the presence of strong compression waves. Significance: IDA exhibits consistency in SWS estimation across different modalities and excitation scenarios, highlighting its robustness and potential clinical utility.
目的:在共振波弹性成像(SWE)中,目的是测量剪切波的速度,然而不需要的压缩波和组织块运动给评估组织硬度带来了挑战。传统方法往往难以区分剪切波和压缩波,导致剪切波速度(SWS)估计不准确。在这项研究中,我们提出了一种称为集成差分自相关(IDA)估计器的新方法,用于在存在压缩波和噪声的情况下准确估计混响的 SWS:与传统技术不同,IDA 估计器计算相邻颗粒之间的速度减法,从而有效地减少了长波长压缩波和其他大范围运动(如呼吸引起的运动)的影响。我们通过以下方法评估了 IDA 的有效性:(1) 使用 k 波模拟软背景中的分支圆柱体,(2) 在乳房模型上使用超声弹性成像,(3) 在人体肝肾区域使用超声弹性成像,以及 (4) 在大脑模型上使用磁共振弹性成像 (MRE):将 IDA 应用于模拟和弹性成像实验的未过滤污染波场,估算出的 SWS 与地面真实值非常吻合(即模拟误差小于 2%,乳腺模型超声弹性成像误差为 9%,MRE 误差为 19%):我们的研究结果表明,即使存在强压缩波,IDA 也能准确估计 SWS,揭示病变的存在:意义:IDA 在不同模式和激发情况下对 SWS 的估算具有一致性,突出了其稳健性和潜在的临床实用性。
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引用次数: 0
Estimating Ground Reaction Forces From Inertial Sensors 通过惯性传感器估算地面反作用力
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-20 DOI: 10.1109/TBME.2024.3465373
B. Song;M. Paolieri;H. E. Stewart;L. Golubchik;J. L. McNitt-Gray;V. Misra;D. Shah
Objective: Our aim is to determine if data collected with inertial measurement units (IMUs) during steady-state running could be used to estimate ground reaction forces (GRFs) and to derive biomechanical variables (e.g., contact time, impulse, change in velocity) using lightweight machine-learning approaches. In contrast, state-of-the-art estimation using LSTMs suffers from prohibitive inference times on edge devices, requires expensive training and hyperparameter optimization, and results in black box models. Methods: We proposed a novel lightweight solution, SVD Embedding Regression (SER), using linear regression between SVD embeddings of IMU data and GRF data. We also compared lightweight solutions including SER and k-Nearest-Neighbors (KNN) regression with state-of-the-art LSTMs. Results: We performed extensive experiments to evaluate these techniques under multiple scenarios and combinations of IMU signals and quantified estimation errors for predicting GRFs and biomechanical variables. We did this using training data from different athletes, from the same athlete, or both, and we explored the use of acceleration and angular velocity data from sensors at different locations (sacrum and shanks). Conclusion: Our results illustrated that lightweight solutions such as SER and KNN can be similarly accurate or more accurate than LSTMs. The use of personal data reduced estimation errors of all methods, particularly for most biomechanical variables (as compared to GRFs); moreover, this gain was more pronounced in the lightweight methods. Significance: The study of GRFs is used to characterize the mechanical loading experienced by individuals in movements such as running, which is clinically applicable to identify athletes at risk for stress-related injuries.
目的:我们的目的是确定在稳态跑步过程中使用惯性测量单元(IMUs)收集的数据是否可用于估算地面反作用力(GRFs),并利用轻量级机器学习方法得出生物力学变量(如接触时间、冲量、速度变化)。相比之下,最先进的 LSTM 估算方法在边缘设备上的推理时间过长,需要进行昂贵的训练和超参数优化,而且会产生黑盒模型:我们提出了一种新颖的轻量级解决方案--SVD 嵌入回归(SER),使用 IMU 数据的 SVD 嵌入与 GRF 数据之间的线性回归。我们还将包括 SER 和 k-Nearest-Neighbors (KNN) 回归在内的轻量级解决方案与最先进的 LSTM 进行了比较:我们进行了大量实验,在多种场景和 IMU 信号组合下对这些技术进行了评估,并量化了预测 GRF 和生物力学变量的估计误差。我们使用了来自不同运动员、同一运动员或两者的训练数据,并探索了如何使用来自不同位置(骶骨和小腿)传感器的加速度和角速度数据:我们的研究结果表明,SER 和 KNN 等轻量级解决方案的准确度与 LSTM 类似,甚至更高。个人数据的使用减少了所有方法的估计误差,尤其是大多数生物力学变量的估计误差(与 GRFs 相比);此外,这种增益在轻量级方法中更为明显:意义:GRFs 研究用于描述个人在跑步等运动中所承受的机械负荷,在临床上可用于识别有应力相关损伤风险的运动员。
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引用次数: 0
S2P-Matching: Self-Supervised Patch-Based Matching Using Transformer for Capsule Endoscopic Images Stitching S2P-匹配:使用变换器进行基于补丁的自我监督匹配,用于胶囊内窥镜图像缝合。
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-20 DOI: 10.1109/TBME.2024.3462502
Feng Lu;Dao Zhou;Haoyang Chen;Shuai Liu;Xianliang Ling;Lei Zhu;Tingting Gong;Bin Sheng;Xiaofei Liao;Hai Jin;Ping Li;David Dagan Feng
The Magnetically Controlled Capsule Endoscopy (MCCE) has a limited shooting range, resulting in capturing numerous fragmented images and an inability to precisely locate and examine the region of interest (ROI) as traditional endoscopy can. Addressing this issue, image stitching around the ROI can be employed to aid in the diagnosis of gastrointestinal (GI) tract conditions. However, MCCE images possess unique characteristics, such as weak texture, close-up shooting, and large angle rotation, presenting challenges to current image-matching methods. In this context, a method named S2P-Matching is proposed for self-supervised patch-based matching in MCCE image stitching. The method involves augmenting the raw data by simulating the capsule endoscopic camera's behavior around the GI tract's ROI. Subsequently, an improved contrast learning encoder is utilized to extract local features, represented as deep feature descriptors. This encoder comprises two branches that extract distinct scale features, which are combined over the channel without manual labeling. The data-driven descriptors are then input into a Transformer model to obtain patch-level matches by learning the globally consented matching priors in the pseudo-ground-truth match pairs. Finally, the patch-level matching is refined and filtered to the pixel-level. The experimental results on real-world MCCE images demonstrate that S2P-Matching provides enhanced accuracy in addressing challenging issues in the GI tract environment with image parallax. The performance improvement can reach up to 203 and 55.8% in terms of NCM (Number of Correct Matches) and SR (Success Rate), respectively. This approach is expected to facilitate the wide adoption of MCCE-based gastrointestinal screening.
磁控胶囊内窥镜(MCCE)的拍摄范围有限,导致捕捉到的图像支离破碎,无法像传统内窥镜那样精确定位和检查感兴趣区(ROI)。为解决这一问题,可采用围绕感兴趣区(ROI)的图像拼接来帮助诊断胃肠道(GI)疾病。然而,MCCE 图像具有独特的特征,如纹理弱、特写拍摄和大角度旋转,这给当前的图像匹配方法带来了挑战。在这种情况下,我们提出了一种名为 S2P-Matching 的方法,用于 MCCE 图像拼接中基于补丁的自监督匹配。该方法通过模拟胶囊内窥镜相机在消化道 ROI 周围的行为来增强原始数据。随后,利用改进的对比度学习编码器提取局部特征,并将其表示为深度特征描述符。该编码器由两个分支组成,分别提取不同的尺度特征,并在通道上进行组合,无需手动标记。然后,将数据驱动的描述符输入变换器模型,通过学习伪地面-真相匹配对中的全局一致匹配先验,获得补丁级匹配。最后,补丁级匹配被细化并过滤到像素级。在真实世界 MCCE 图像上的实验结果表明,S2P-匹配在解决具有图像视差的消化道环境中的挑战性问题方面提供了更高的准确性。在 NCM(正确匹配数)和 SR(成功率)方面,性能分别提高了 203% 和 55.8%。这种方法有望促进基于 MCCE 的胃肠道筛查的广泛采用。
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引用次数: 0
Wearable Magnetoencephalography in a Lightly Shielded Environment 轻屏蔽环境下的可穿戴式脑磁图。
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-20 DOI: 10.1109/TBME.2024.3465654
Niall Holmes;James Leggett;Ryan M. Hill;Lukas Rier;Elena Boto;Holly Schofield;Tyler Hayward;Eliot Dawson;David Woolger;Vishal Shah;Samu Taulu;Matthew J. Brookes;Richard Bowtell
Wearable magnetoencephalography based on optically pumped magnetometers (OPM-MEG) offers non-invasive and high-fidelity measurement of human brain electrophysiology. The flexibility of OPM-MEG also means it can be deployed in participants of all ages and permits scanning during movement. However, the magnetic fields generated by neuronal currents – which form the basis of the OPM-MEG signal – are much smaller than environmental fields, and this means measurements are highly sensitive to interference. Further, OPMs have a low dynamic range, and should be operated in near-zero background field. Scanners must therefore be housed in specialised magnetically shielded rooms (MSRs), formed from multiple layers of shielding material. The MSR is a critical component, and current OPM-optimised shields are large (>3 m in height), heavy (>10,000 kg) and expensive (with up to 5 layers of material). This restricts the uptake of OPM-MEG technology. Here, we show that the application of the Maxwell filtering techniques signal space separation (SSS) and its spatiotemporal extension (tSSS) to OPM-MEG data can isolate small signals of interest measured in the presence of large interference. We compare phantom recordings and MEG data from a participant performing a motor task in a state-of-the-art 5-layer MSR, to similar data collected in a lightly shielded room: application of tSSS to data recorded in the lightly shielded room allowed accurate localisation of a dipole source in the phantom and neuronal sources in the brain. Our results point to future deployment of OPM-MEG in lighter, cheaper and easier-to-site MSRs which could catalyse widespread adoption of the technology.
基于光学泵浦磁力计(OPM-MEG)的可穿戴式脑磁图(Wearable magnetoencephalography)可对人脑电生理学进行无创、高保真测量。OPM-MEG 的灵活性还意味着它可用于所有年龄段的参与者,并允许在运动过程中进行扫描。然而,构成 OPM-MEG 信号基础的神经元电流所产生的磁场比环境磁场小得多,这意味着测量对干扰非常敏感。此外,OPM 的动态范围较低,应在接近零的背景场中运行。因此,扫描仪必须安装在由多层屏蔽材料组成的专用磁屏蔽室(MSR)中。MSR 是一个关键部件,而目前的 OPM 优化屏蔽体积大(>3 米高)、重量大(>10,000 千克)且价格昂贵(多达 5 层材料)。这限制了 OPM-MEG 技术的应用。在这里,我们展示了麦克斯韦滤波技术信号空间分离(SSS)及其时空扩展(tSSS)在 OPM-MEG 数据中的应用,可以分离出在大干扰下测量到的小信号。我们比较了在最先进的 5 层 MSR 中执行运动任务的参与者的幻影记录和 MEG 数据,以及在轻度屏蔽房间中收集的类似数据:对轻度屏蔽房间中记录的数据应用 tSSS 可以准确定位幻影中的偶极子源和大脑中的神经元源。我们的研究结果表明,未来将在更轻、更便宜、更容易定位的 MSR 中部署 OPM-MEG,这将促进该技术的广泛应用。
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引用次数: 0
IEEE Engineering in Medicine and Biology Society Information IEEE 医学与生物学工程学会信息
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-19 DOI: 10.1109/TBME.2024.3443762
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引用次数: 0
IEEE Transactions on Biomedical Engineering Information for Authors IEEE 生物医学工程论文集 作者须知
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-19 DOI: 10.1109/TBME.2024.3443764
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引用次数: 0
IEEE Transactions on Biomedical Engineering Handling Editors Information 电气和电子工程师学会《生物医学工程论文集》处理编辑信息
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-19 DOI: 10.1109/TBME.2024.3443766
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引用次数: 0
Deep Learning-Based Tract Classification of Preoperative DWI Tractography Advances the Prediction of Short-Term Postoperative Language Improvement in Children With Drug-Resistant Epilepsy 基于深度学习的术前 DWI 节段成像分类有助于预测耐药癫痫患儿术后短期语言改善情况
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-18 DOI: 10.1109/TBME.2024.3463481
Min-Hee Lee;Soumyanil Banerjee;Hiroshi Uda;Alanna Carlson;Ming Dong;Robert Rothermel;Csaba Juhász;Eishi Asano;Jeong-Won Jeong
Objective: To develop an innovative deep convolutional neural network (DCNN)-based tract classification to enhance the prediction of short-term postoperative language improvement using axonal connectivity markers derived from specific language modular networks (LMNs) within the preoperative whole-brain diffusion-weighted imaging connectome (wDWIC). Methods: We employed a three-step approach. First, our previous DCNN-based tract classification to detect true-positive eloquent tracts was extended using an open-source database of high-quality wDWIC to facilitate the accurate classification of true-positive tracts within the preoperative backbone wDWIC of individual patients. Next, we applied psychometry-driven DWIC analysis to the resulting DCNN-based backbone wDWIC in order to create core, expressive, and receptive LMNs. Finally, graph and circuit theory-based connectivity markers were assessed within the three LMNs and compared using a series of machine learning algorithms to predict the presence of postoperative language improvement from a given LMN. Results: The results showed that the extended DCNN tract classification significantly improved the reproducibility of connectivity markers by up to 35.5$%$ of F-statistics across different LMNs. The prediction accuracy increased by up to 40$%$ across different machine learning algorithms. Notably, the best algorithm achieved the accuracy of 96$%$/94$%$/96$%$ to predict the presence of language improvement about two months after surgery in core/expressive/receptive domain of an independent validation cohort. Conclusion: These domains hold great potential to assist physicians in identifying candidates whose language skills stand to benefit from early surgery. Significance: DCNN tract classification may be an effective tool to improve predicting short-term postoperative language improvement in pediatric epilepsy surgery.
目的:开发一种创新的基于深度卷积神经网络(DCNN)的神经束分类方法,利用来自术前全脑弥散加权成像连接组(wDWIC)内特定语言模块网络(lns)的轴突连通性标记物,增强对术后短期语言改善的预测。方法:采用三步法。首先,我们使用开源的高质量wDWIC数据库扩展了之前基于dcnn的真阳性泪道分类方法,以促进个体患者术前骨干wDWIC中真阳性泪道的准确分类。接下来,我们将心理测量驱动的wwic分析应用于所得到的基于dcnn的主干wwwic,以创建核心、表达性和接受性lnn。最后,在三个LMN中评估基于图和电路理论的连接标记,并使用一系列机器学习算法进行比较,以预测给定LMN术后语言改善的存在。结果:结果表明,扩展DCNN通道分类显著提高了连接标记在不同lmn之间的f统计量的可重复性,最高可达35.5%。在不同的机器学习算法中,预测精度提高了40 %。值得注意的是,在独立验证队列中,最佳算法在预测术后两个月左右核心/表达/接受域的语言改善方面达到了96$% /94$% /96$%的准确率。结论:这些领域具有很大的潜力,可以帮助医生识别那些语言技能从早期手术中受益的候选人。意义:DCNN束分类可能是预测小儿癫痫术后短期语言改善的有效工具。
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引用次数: 0
Modeling the Mechanisms of Non-Neurogenic Dynamic Cerebral Autoregulation 非神经源性动态脑自动调节机制建模
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-18 DOI: 10.1109/TBME.2024.3463873
Natali van Zijl;Abhirup Banerjee;Stephen John Payne
Objective: Dynamic cerebral autoregulation (dCA) refers to a collection of mechanisms that act to maintain steady state cerebral blood flow (CBF) near constant despite changes in arterial blood pressure (ABP), but which is known to become impaired in various cerebrovascular diseases. Currently, the mechanisms of dCA and how they are affected in different physiological conditions are poorly understood. The objective of this study was to disentangle the magnitudes and time scales of the myogenic and metabolic responses of dCA, in order to investigate how each mechanism is affected in impaired dCA. Methods: A physiological model of dCA was developed, where both the myogenic and metabolic responses were represented by a gain and time constant. Model parameters were optimized with pressure-flow impulse responses under normocapnic, thigh cuff, and hypercapnic conditions. The impulse responses were derived by applying transfer function analysis (TFA) to experimental recordings of ABP (Finapres), end-tidal CO2 (capnograph), and CBF velocity (transcranial doppler ultrasound in bilateral middle cerebral arteries). Results: The myogenic gain to time constant ratio was significantly smaller (p-values < 0.001 using both univariate and multivariate TFA), and the metabolic time constant was significantly larger (p-values < 0.001 using both univariate and multivariate TFA) in hypercapnia compared to normocapnia. Conclusion: Both the myogenic and metabolic responses were shown to be affected in impaired dCA, and the metabolic response was shown to be slowed down. Significance: This study contributes to the understanding of the complexities of dCA and how it is affected in different physiological conditions.
目的:动态脑自动调节(Dynamic cerebral autoregulation, dCA)是指在动脉血压(ABP)变化的情况下维持脑血流量(CBF)接近恒定的稳态,但在各种脑血管疾病中会受到损害的一系列机制。目前,dCA的作用机制及其在不同生理条件下的影响尚不清楚。本研究的目的是解开dCA的肌源性和代谢反应的大小和时间尺度,以研究dCA受损时每种机制是如何受到影响的。方法:建立dCA的生理模型,其中肌源性和代谢反应均由增益和时间常数表示。模型参数在正碳酸、大腿袖带和高碳酸条件下进行优化。通过传递函数分析(TFA)对实验记录的ABP (Finapres)、末潮CO2 (capnograph)和CBF速度(双侧大脑中动脉经颅多普勒超声)的脉冲响应进行推导。结果:与正常碳酸血症相比,高碳酸血症的肌原性增益与时间常数之比明显更小(单因素和多因素TFA的p值< 0.001),代谢时间常数明显更大(单因素和多因素TFA的p值< 0.001)。结论:dCA损伤后,肌源性和代谢反应均受到影响,代谢反应减慢。意义:本研究有助于了解dCA的复杂性及其在不同生理条件下的影响。
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引用次数: 0
Enhanced Technique for Accurate Localization and Life-Sign Detection of Human Subjects Using Beam-Steering Radar Architectures 利用波束转向雷达架构对人体进行精确定位和生命迹象探测的增强型技术
IF 4.4 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-18 DOI: 10.1109/TBME.2024.3463199
Marco Mercuri;Giulia Sacco;Rainer Hornung;Huib Visser;Ilde Lorato;Stefano Pisa;Pierangelo Veltri;Guido Dolmans
In this work, we propose a signal processing technique for beam-steering radar architectures allowing concurrent two-dimensional (2-D) localization and vital signs monitoring of human subjects. We demonstrated it by using a single-input single-output (SISO) frequency-modulated continuous wave (FMCW) radar which integrates two frequency-scanning antennas (FSAs). This method is capable of isolating the Doppler signal generated by each single subject from the contributions of all the reflections in the monitored environment. This allows determining the number of individuals in the room and accurately measuring their vital signs parameters (respiration and heart rates) and 2-D positions (range and azimuth information). The spectral analysis, the data matrix generation and the signal processing technique are detailed and discussed. Experimental results demonstrated the feasibility of the proposed approach, showing the ability in determining the number of subjects present in the room, in accurately measuring and tracking over time their vital signs parameters, and in 2-D localization with errors within the limits of the radar range and angular resolutions. Practical applications arise for healthcare, Hospital 4.0, Internet of Medical Things (IoMT), ambient assisted living, smart buildings and through-wall sensing.
在这项工作中,我们提出了一种波束导向雷达架构的信号处理技术,允许并发二维(2-D)定位和人类受试者的生命体征监测。我们通过使用集成了两个频率扫描天线(FSAs)的单输入单输出(SISO)调频连续波(FMCW)雷达来证明它。该方法能够从被监测环境中所有反射的贡献中分离出每个单独主体产生的多普勒信号。这可以确定房间里的人数,并准确测量他们的生命体征参数(呼吸和心率)和二维位置(范围和方位信息)。详细讨论了频谱分析、数据矩阵生成和信号处理技术。实验结果证明了该方法的可行性,能够确定房间内受试者的数量,准确测量和跟踪他们的生命体征参数,并在雷达距离和角度分辨率范围内的误差范围内进行二维定位。实际应用出现在医疗保健、医院4.0、医疗物联网(IoMT)、环境辅助生活、智能建筑和穿墙传感等领域。
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引用次数: 0
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IEEE Transactions on Biomedical Engineering
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