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Scanning the Horizon of Replicability in Neuroscience: A Recipe of Developing Replicable Deep Models for Functional Neuroimages 扫描神经科学可复制性的地平线:开发可复制的功能神经图像深度模型的配方
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-29 DOI: 10.1109/TBME.2025.3581167
Jiaqi Ding;Tingting Dan;Ziquan Wei;Paul J. Laurienti;Guorong Wu
Neuroimaging techniques have revolutionized our capacity to understand the neurobiological underpinnings of behavior in-vivo. Leveraging an unprecedented wealth of public neuroimaging data, there is a surging interest to answer novel neuroscience questions using machine learning techniques. Despite the remarkable successes in existing deep models, current state-of-arts have not yet recognized the potential issues of experimental replicability arising from ubiquitous cognitive state changes, which might lead to spurious conclusions and impede generalizability across neuroscience studies. In this work, we first dissect the critical (but often missed) challenge of ensuring prediction replicability in spite of task-irrelevant functional fluctuations. Then, we formulate the solution as a domain adaptation where we devise a cross-attention mechanism with discrepancy loss in a Transformer backbone. We have evaluated the cognitive task recognition accuracy and consistency on multi-run functional neuroimages (successive imaging measurements of the same cognitive task in a short period of time) from Human Connectome Project, where the significantly enhanced replicability and accuracy by our proposed deep model indicate the great potential of addressing real-world neuroscience questions through the lens of reliable deep models.
神经成像技术已经彻底改变了我们理解体内行为的神经生物学基础的能力。利用空前丰富的公共神经成像数据,人们对使用机器学习技术回答新的神经科学问题的兴趣激增。尽管现有的深度模型取得了显著的成功,但目前的技术水平尚未认识到普遍存在的认知状态变化引起的实验可重复性的潜在问题,这可能导致虚假的结论并阻碍神经科学研究的推广。在这项工作中,我们首先剖析了在任务无关的功能波动下确保预测可复制性的关键(但经常被忽略)挑战。然后,我们将该解决方案表述为域适应,其中我们在Transformer主干中设计了具有差异损失的交叉注意机制。我们对来自人类连接组项目的多运行功能神经图像(短时间内同一认知任务的连续成像测量)的认知任务识别准确性和一致性进行了评估,其中我们提出的深度模型显著增强了可重复性和准确性,表明通过可靠的深度模型解决现实世界神经科学问题的巨大潜力。
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引用次数: 0
Detection of Bilateral Tonic-Clonic Seizures Using Miniaturized Wearable Electromyography-Accelerometry Sensors. 微型可穿戴式肌电-加速度传感器检测双侧强直-阵挛性癫痫。
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-29 DOI: 10.1109/TBME.2025.3648668
Isabel Sarzo Wabi, Daniel Alejandro Galindo Lazo, Amirhossein Jahani, Sarra Chebaane, Raphaelle Hartwig, Carole Ruppli, Oumayma Gharbi, Manon Robert, Annie Perreault, Claudia Rodriguez, Juan Pablo Millan Sandoval, Gianluca D'Onofrio, Alexis Robin, Dang Khoa Nguyen, Elie Bou Assi

Objective: This study aimed to develop a seizure detection algorithm using surface electromyography (sEMG) and accelerometry (ACC) signals recorded with miniaturized wearable sensors.

Methods: Continuous sEMG-ACC signals were acquired from patients wearing eight sensors positioned bilaterally on the upper trapezius, anterior deltoid, biceps brachii, and tibialis anterior muscles. We trained an extreme gradient boosting classifier to identify seizure epochs using setups with eight, two, and one sensor(s). Performance was evaluated via patient-wise nested cross-validation, and specificity was further assessed on an independent patient cohort without seizures.

Results: Eleven generalized tonic-clonic seizures (GTCS) and focal-to-bilateral tonic-clonic seizures (FBTCS) were recorded from nine patients over 1359.6 h. The best results were obtained with a dual-sensor setup combining data from the right biceps brachii and the left tibialis anterior, achieving 100% sensitivity, 0.12 FAR/24h, and median detection latency of 22 s. On 1744.18 h of data from 19 patients without seizures, FAR/24h was 0.06.

Conclusion: The developed algorithm effectively detected GTCS and FBTCS in an epilepsy monitoring unit, even with a reduced number of sensors.

Significance: This approach could enable timely interventions in outpatient settings, potentially improving safety and independence for people with epilepsy.

目的:本研究旨在开发一种利用小型化可穿戴传感器记录的表面肌电图(sEMG)和加速度测量(ACC)信号的癫痫检测算法。方法:患者在双侧斜方肌上、三角肌前、肱二头肌和胫骨前肌上佩戴8个传感器,获得连续的肌电信号。我们训练了一个极端梯度增强分类器,使用8个、2个和1个传感器的设置来识别癫痫发作时间。通过患者嵌套交叉验证来评估性能,并在无癫痫发作的独立患者队列中进一步评估特异性。结果:9例患者在1359.6 h内记录了11例全身性强直-阵挛性发作(GTCS)和局灶-双侧强直-阵挛性发作(FBTCS)。双传感器装置结合右侧肱二头肌和左侧胫骨前肌的数据获得了最好的结果,达到100%的灵敏度,0.12 FAR/24h,中位检测潜伏期为22 s。在19例无癫痫发作患者的1744.18 h数据中,FAR/24h为0.06。结论:该算法在减少传感器数量的情况下,可以有效地检测出癫痫监测单元的GTCS和FBTCS。意义:这种方法可以在门诊进行及时干预,潜在地提高癫痫患者的安全性和独立性。
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引用次数: 0
A Novel Rat Robot: Multi Degree of Freedom Motion Control. 一种新型老鼠机器人:多自由度运动控制。
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-26 DOI: 10.1109/TBME.2025.3648651
Le Zhang, Xiangyu Luo, Peili Cao, Ke Cheng, Hu Liu, Ruifang Zhao, Xiang Zan, Jiuhong Ma, Rui Cheng, Ruiying Wang, Xiaojuan Hou, Xiujian Chou, Jian He

Objective: The development of brain-computer interface (BCI) technology has enabled animals to execute movements in accordance with human intent. The rat robot represents a novel robotic system based on BCI technology. However, due to limitations in electrode fabrication techniques and the use of simplistic control strategies, current rat robots are restricted to limited movement patterns, which hinder their applicability in real-world scenarios. To address these challenges, we have developed a portable wireless neural stimulator and a novel 3D integrated stimulating electrode. By refining the locomotion control strategy, we aim to achieve complex, high-degree-of-freedom movement in rat robot systems.

Methods: 3D integrated electrodes were implanted into the rats' head, with no reward-based training required. By utilizing a wearable wireless stimulation backpack to connect the electrodes and deliver electrical stimulation to multiple brain regions, thereby enabling the rat to perform forward movement, turning, and stopping behaviors.

Results: The experimental results demonstrate that under optimized stimulation parameters, the forward speed of the rat robot can be controlled to achieve 31.06 ± 1.21 m/min, the turning angle can reach up to 150 ± 1.22°, and the stopping duration can be flexibly adjusted. Furthermore, we presented a practical scenario in which the rat robot successfully executed a predefined navigation task in a real-world environment, thereby validating its high degree of movement flexibility and control precision.

Conclusion: This study achieved high-degree-of-freedom motion control of rat robots without the need for reward-based training, which was previously unattainable.

Significance: This research establishes a crucial foundation and provides valuable technical references for the application of animal robots in fields such as information reconnaissance and wreckage search and rescue operations.

目的:脑机接口(BCI)技术的发展使动物能够按照人类的意图执行动作。大鼠机器人是一种基于脑机接口技术的新型机器人系统。然而,由于电极制造技术的限制和简单控制策略的使用,目前的老鼠机器人仅限于有限的运动模式,这阻碍了它们在现实世界中的适用性。为了应对这些挑战,我们开发了一种便携式无线神经刺激器和一种新型的3D集成刺激电极。通过改进运动控制策略,我们的目标是在大鼠机器人系统中实现复杂的、高自由度的运动。方法:将3D集成电极植入大鼠头部,无需奖励训练。通过使用可穿戴式无线刺激背包连接电极,并将电刺激传递到多个大脑区域,从而使大鼠能够执行向前运动,转弯和停止行为。结果:实验结果表明,在优化的激励参数下,大鼠机器人的前进速度可控制为31.06±1.21 m/min,转弯角度可达150±1.22°,停车时间可灵活调整。此外,我们还提供了一个实际场景,在该场景中,大鼠机器人在现实环境中成功执行了预定义的导航任务,从而验证了其高度的运动灵活性和控制精度。结论:本研究在不需要奖励训练的情况下实现了大鼠机器人的高自由度运动控制,这是以前无法实现的。意义:本研究为动物机器人在信息侦察、残骸搜救等领域的应用奠定了重要的基础,提供了有价值的技术参考。
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引用次数: 0
3D Printing-Enabled Near-Field Probe for Millimeter-Wave Skin Cancer Tumor Imaging. 用于毫米波皮肤癌肿瘤成像的3D打印近场探针。
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-26 DOI: 10.1109/TBME.2025.3648778
Meisam Esfandiari, Majid Amiri, Jiexin Lai, Xiaojing Lv, Yang Yang

A novel 3D-printed microwave probe operating in the 25-45 GHz frequency range is designed and fabricated for early skin tumor detection using signal processing. Due to the highly lossy nature of the skin, electromagnetic wave penetration is difficult. To overcome this limitation, a multi-section probe design was developed to enhance wave penetration into the skin layer. This design effectively mitigates the effects of high-loss tangents in tissues and compensates for the small size of tumors, aiding in early detection. The probe's performance is validated through simulations and experimental measurements, showing excellent agreement. For imaging evaluation, a phantom model composed of pork skin, measuring 30 mm × 30 mm with a skin thickness of 4 mm, is utilized. A total of 215 scanning points were analyzed, and time-domain reflection waves were extracted, demonstrating the probe's ability to detect variations in tissue properties accurately. These signals were then processed using an entropy-based method. The reconstructed images across various scenarios highlight the effectiveness of the proposed probe in achieving high-resolution microwave imaging, indicating its strong potential for non-invasive, early-stage tumor detection.

设计和制作了一种新型的3d打印微波探针,工作频率在25-45 GHz范围内,用于信号处理的早期皮肤肿瘤检测。由于皮肤的高损耗特性,电磁波很难穿透。为了克服这一限制,开发了一种多段探头设计来增强波对皮肤层的穿透。这种设计有效地减轻了组织中高损耗切线的影响,并补偿了肿瘤的小尺寸,有助于早期发现。通过仿真和实验测量验证了探头的性能,显示出良好的一致性。成像评价采用猪皮模型,尺寸为30 mm × 30 mm,皮厚为4 mm。共分析了215个扫描点,并提取了时域反射波,证明了探针准确检测组织特性变化的能力。然后使用基于熵的方法处理这些信号。不同场景下的重建图像突出了该探针在实现高分辨率微波成像方面的有效性,表明其在非侵入性早期肿瘤检测方面具有强大的潜力。
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引用次数: 0
Vibrotactile Stimulation for Object Stiffness Feedback Using Spatiotemporal Encoding. 基于时空编码的物体刚度反馈振动触觉刺激。
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-26 DOI: 10.1109/TBME.2025.3649115
Abhijit Dey, Shyamanta M Hazarika

Restoring stiffness perception in prosthetic users through non-invasive methods remains a major challenge in haptic feedback research. This study evaluates a wearable vibrotactile stimulation system that conveys object stiffness information through two encoding strategies: Proposed Spatiotemporal Encoding and Circular Encoding, applied to two anatomical locations: upper-arm and forearm. Ten healthy participants completed structured trials of stiffness-discrimination involving vibrotactile cues corresponding to four stiffness categories. The results showed significantly higher classification accuracy (CA) and information transfer (IT) with the Proposed encoding strategy at both sites. The upper-arm-proposed configuration achieved peak performance (CA: 97.75%, IT: 1.84 bit/s), whereas the forearm-circular strategy yielded the lowest (CA: 73.62%, IT: 0.86 bit/s). NASA-TLX scores indicated a significantly lower mental workload for the proposed strategy, with the upper-arm feedback location providing superior perceptual clarity. A supplementary evaluation with a transradial amputee further demonstrated that the proposed encoding strategy remained interpretable, achieving classification accuracies above 85%. The classification accuracies over different conditions followed the same pattern as observed in healthy participants. These findings validate the importance of encoding geometry and stimulation site in designing effective haptic interfaces and support the feasibility of spatially distributed, non-invasive vibrotactile feedback for enhancing tactile perception in prosthetic applications.

通过非侵入性方法恢复义肢使用者的刚度感知仍然是触觉反馈研究的主要挑战。本研究评估了一种可穿戴的振动触觉刺激系统,该系统通过两种编码策略传递物体刚度信息:提出的时空编码和循环编码,应用于两个解剖位置:上臂和前臂。10名健康的参与者完成了刚度辨别的结构化试验,涉及四种刚度类别对应的振动触觉提示。结果表明,该编码策略在两个位点上的分类准确率和信息传递率均有显著提高。上臂建议的配置实现了峰值性能(CA: 97.75%, IT: 1.84 bit/s),而前臂圆形策略产生了最低的性能(CA: 73.62%, IT: 0.86 bit/s)。NASA-TLX分数表明,采用该策略的心理负荷显著降低,上臂反馈位置提供了更高的感知清晰度。一个经桡骨截肢者的补充评估进一步证明了所提出的编码策略仍然是可解释的,实现了85%以上的分类准确率。在不同条件下的分类准确度与在健康参与者中观察到的模式相同。这些发现验证了编码几何和刺激点在设计有效触觉界面中的重要性,并支持了空间分布、非侵入性振动触觉反馈在假肢应用中增强触觉感知的可行性。
{"title":"Vibrotactile Stimulation for Object Stiffness Feedback Using Spatiotemporal Encoding.","authors":"Abhijit Dey, Shyamanta M Hazarika","doi":"10.1109/TBME.2025.3649115","DOIUrl":"https://doi.org/10.1109/TBME.2025.3649115","url":null,"abstract":"<p><p>Restoring stiffness perception in prosthetic users through non-invasive methods remains a major challenge in haptic feedback research. This study evaluates a wearable vibrotactile stimulation system that conveys object stiffness information through two encoding strategies: Proposed Spatiotemporal Encoding and Circular Encoding, applied to two anatomical locations: upper-arm and forearm. Ten healthy participants completed structured trials of stiffness-discrimination involving vibrotactile cues corresponding to four stiffness categories. The results showed significantly higher classification accuracy (CA) and information transfer (IT) with the Proposed encoding strategy at both sites. The upper-arm-proposed configuration achieved peak performance (CA: 97.75%, IT: 1.84 bit/s), whereas the forearm-circular strategy yielded the lowest (CA: 73.62%, IT: 0.86 bit/s). NASA-TLX scores indicated a significantly lower mental workload for the proposed strategy, with the upper-arm feedback location providing superior perceptual clarity. A supplementary evaluation with a transradial amputee further demonstrated that the proposed encoding strategy remained interpretable, achieving classification accuracies above 85%. The classification accuracies over different conditions followed the same pattern as observed in healthy participants. These findings validate the importance of encoding geometry and stimulation site in designing effective haptic interfaces and support the feasibility of spatially distributed, non-invasive vibrotactile feedback for enhancing tactile perception in prosthetic applications.</p>","PeriodicalId":13245,"journal":{"name":"IEEE Transactions on Biomedical Engineering","volume":"PP ","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-12-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145843822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of Insulin Bolus Calculators in Type 1 Diabetes using A Framework Based on Real-world Data, Digital Twins and Machine Learning. 使用基于真实世界数据、数字双胞胎和机器学习的框架开发1型糖尿病胰岛素丸计算器。
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-25 DOI: 10.1109/TBME.2025.3648515
Elisa Pellizzari, Giacomo Cappon, Giulia Nicolis, Giovanni Sparacino, Andrea Facchinetti

Objective: Precise mealtime insulin bolus (MIB) dosing is essential in type 1 diabetes (T1D) to minimize glucose excursions from carbohydrate intake. Traditional MIB formulas, based on glucose concentration at mealtime, are suboptimal and do not exploit real-time data from continuous glucose monitoring (CGM). Existing methods that incorporate CGM data often rely on empirical rules or are developed in-silico, limiting their applicability to real-world conditions. This work investigates a framework combining machine learning (ML) algorithms, digital twins (DTs) and real-world data, to improve the assessment, tuning, and development of MIB dosing algorithms.

Methods: We utilized ReplayBG, a DT for T1D, to: i) evaluate a published linear ML model (Noaro et al.), originally developed in-silico, on real-world data from 30 free-living subjects; ii) recalibrate this model to fit the real-world dataset; and iii) train and test nonlinear gradient-boosting models (XGBoost, LightGBM) developed entirely on real data through DT simulations.

Results: Progressing to DT-enhanced models, we observed improvements in glucose control. The recalibrated linear and nonlinear models increased time-in-range (up to 80.6% with LightGBM vs. 75.6% for Noaro et al.) and reduced time-above-range. Risk metrics reflecting hypo/hyperglycemia also improved.

Conclusions: These findings demonstrate that a DT-based framework grounded in real-world data supports both the refinement and development of bolus calculators, achieving performance gains beyond the original in-silico model.

Significance: DTs allow the use real-world data to develop, validate and extend the domain of validity of new MIB formulas, paving the way to practical applications of ML tailored solutions for T1D.

目的:精确的餐时胰岛素剂量(MIB)对于1型糖尿病(T1D)至关重要,可以减少碳水化合物摄入引起的葡萄糖漂移。传统的基于用餐时葡萄糖浓度的MIB公式不是最优的,并且不能利用连续血糖监测(CGM)的实时数据。纳入CGM数据的现有方法通常依赖于经验规则或在计算机中开发,限制了它们对现实世界条件的适用性。这项工作研究了一个结合机器学习(ML)算法、数字双胞胎(dt)和现实世界数据的框架,以改进MIB剂量算法的评估、调优和开发。方法:我们利用ReplayBG (T1D的DT)来:i)评估已发表的线性ML模型(Noaro等人),该模型最初是在计算机上开发的,基于来自30名自由生活受试者的真实数据;Ii)重新校准该模型以适应真实数据集;iii)训练和测试非线性梯度增压模型(XGBoost, LightGBM),这些模型完全是通过DT模拟在真实数据上开发的。结果:发展到dt增强模型,我们观察到血糖控制的改善。重新校准的线性和非线性模型增加了范围内时间(LightGBM为80.6%,Noaro等为75.6%),并减少了范围以上时间。反映低血糖/高血糖的风险指标也有所改善。结论:这些发现表明,基于现实世界数据的基于dt的框架支持丸计算器的改进和开发,实现了超越原始硅模型的性能提升。意义:DTs允许使用真实世界的数据来开发、验证和扩展新的MIB公式的有效性领域,为T1D的ML定制解决方案的实际应用铺平了道路。
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引用次数: 0
Leveraging Clinical Text and Class Conditioning for 3D Prostate MRI Generation. 利用临床文本和类条件的三维前列腺MRI生成。
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-25 DOI: 10.1109/TBME.2025.3648426
Emerson P Grabke, Babak Taati, Masoom A Haider

Objective: Latent diffusion models (LDM) could alleviate data scarcity challenges affecting machine learning development for medical imaging. However, medical LDM strategies typically rely on short-prompt text encoders, nonmedical LDMs, or large data volumes. These strategies can limit performance and scientific accessibility. We propose a novel LDM conditioning approach to address these limitations.

Methods: We propose Class-Conditioned Efficient Large Language model Adapter (CCELLA), a novel dual-head conditioning approach that simultaneously conditions the LDM U-Net with free-text clinical reports and radiology classification. We also propose a data-efficient LDM pipeline centered around CCELLA and a proposed joint loss function. We first evaluate our method on 3D prostate MRI against state-of-the-art. We then augment a downstream classifier model training dataset with synthetic images from our method.

Results: Our method achieves a 3D FID score of 0.025 on a size-limited 3D prostate MRI dataset, significantly outperforming a recent foundation model with FID 0.070. When training a classifier for prostate cancer prediction, adding synthetic images generated by our method during training improves classifier accuracy from 69% to 74% and outperforms classifiers trained on images generated by prior state-of-the-art. Classifier training solely on our method's synthetic images achieved comparable performance to real image training.

Conclusion: We show that our method improved both synthetic image quality and downstream classifier performance using limited data and minimal human annotation.

Significance: The proposed CCELLA-centric pipeline enables radiology report and class-conditioned LDM training for high-quality medical image synthesis given limited data volume and human data annotation, improving LDM performance and scientific accessibility.

目的:潜在扩散模型(LDM)可以缓解影响医学成像机器学习发展的数据稀缺性挑战。然而,医疗LDM策略通常依赖于短提示文本编码器、非医疗LDM或大数据量。这些策略可能会限制性能和科学可访问性。我们提出了一种新的LDM调节方法来解决这些限制。方法:我们提出了类条件有效大语言模型适配器(CCELLA),这是一种新颖的双头部条件反射方法,它同时条件反射LDM U-Net与自由文本临床报告和放射学分类。我们还提出了一个以CCELLA为中心的数据高效LDM管道和一个联合损失函数。我们首先评估我们的方法在三维前列腺MRI与最先进的。然后,我们用我们的方法合成的图像增强下游分类器模型训练数据集。结果:我们的方法在尺寸有限的3D前列腺MRI数据集上实现了0.025的3D FID评分,显着优于最近的FID 0.070的基础模型。在训练用于前列腺癌预测的分类器时,在训练过程中添加由我们的方法生成的合成图像将分类器的准确率从69%提高到74%,并且优于使用现有技术生成的图像训练的分类器。仅在我们方法的合成图像上进行分类器训练,取得了与真实图像训练相当的性能。结论:我们的方法使用有限的数据和最少的人工注释提高了合成图像质量和下游分类器的性能。意义:所提出的以ccella为中心的管道使放射学报告和类别条件的LDM训练能够在有限的数据量和人工数据注释的情况下进行高质量的医学图像合成,提高LDM性能和科学可及性。
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引用次数: 0
PDWearML: Leveraging Daily Activities for Fast Parkinson's Disease Severity Assessment with Wearable Machine Learning. PDWearML:利用可穿戴机器学习,利用日常活动快速评估帕金森病的严重程度。
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-25 DOI: 10.1109/TBME.2025.3648564
Xulong Wang, Xiyang Peng, Zheyuan Xu, Mingchang Xu, Yun Yang, Menghui Zhou, Zhong Zhao, Peng Yue, Po Yang

Objective: Achieving effective and robust free-living PD severity assessment with wearable intelligence technologies requires a deep understanding of clinically relevant features, representative activities, and machine learning algorithms.

Methods: We designed a unified analytic framework (PDWearML) to optimise wearable ML approaches with simple daily activities for fast assessment of PD severity. It comprises annotation criteria, feature importance analysis, representative activity combination, and PD severity assessment. We conducted a 12-month study, developing a supervised PD wearable dataset containing 100 PD patients and 35 age-matched healthy controls using Huawei smartwatches and Shimmer. PD severity, assessed by trained physicians using the Hoehn and Yahr (H&Y) scale.

Results: The results reveal that through optimising multi-level feature extraction and combining three representative daily activities (WALK, ARISING-FROM-CHAIR, and DRINK), our smartwatch-based machine learning approach can assess PD severity in supervised settings within 2 minutes with an accuracy of up to 84.7%.

Significance: This work holds significant clinical value, offering a potential auxiliary tool for faster, more tailored interventions in PD healthcare. Code is availableat code ocean platform and https://github.com/wang-xulong/PDWearML.

目的:利用可穿戴智能技术实现有效、稳健的自由生活PD严重程度评估,需要深入了解临床相关特征、代表性活动和机器学习算法。方法:我们设计了一个统一的分析框架(PDWearML)来优化简单日常活动的可穿戴ML方法,以快速评估PD的严重程度。它包括标注标准、特征重要性分析、代表性活动组合和PD严重程度评估。我们进行了一项为期12个月的研究,开发了一个有监督的PD可穿戴数据集,其中包含100名PD患者和35名年龄匹配的健康对照,使用华为智能手表和Shimmer。PD严重程度,由训练有素的医生使用Hoehn and Yahr (H&Y)量表评估。结果表明,通过优化多层次特征提取并结合三种典型的日常活动(步行、从椅子上站起来和喝酒),我们基于智能手表的机器学习方法可以在2分钟内评估PD的严重程度,准确率高达84.7%。意义:这项工作具有重要的临床价值,为PD医疗保健中更快、更有针对性的干预提供了潜在的辅助工具。代码可在代码海洋平台和https://github.com/wang-xulong/PDWearML。
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引用次数: 0
Stochastic Sparse Sampling: A Variable-Length Time Series Classification Framework for Seizure Onset Zone Localization. 随机稀疏抽样:一种用于癫痫发作区域定位的变长时间序列分类框架。
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-25 DOI: 10.1109/TBME.2025.3648250
Xavier Mootoo, Alan A Diaz-Montiel, Milad Lankarany, Hina Tabassum

Variable-length time series classification (VTSC) problems are prevalent in healthcare applications, such as heart rate monitoring and electrophysiological recordings, where sequence length varies among patients and events. VTSC is challenging as finite-context models such as Transformers require padding, truncation, or interpolation, leading to distortion in the input data, higher computational costs, and overfitting, while infinite-context models including recurrent neural networks struggle with overcompression and unstable gradients over long sequences. In this paper, we develop a novel VTSC framework based on Stochastic Sparse Sampling (SSS) for seizure onset zone (SOZ) localization, a critical VTSC problem requiring identification of seizure-inducing brain regions from variable-length electrophysiological time series. The proposed framework sparsely samples time series windows to compute local predictions, which are then aggregated and calibrated to form a global prediction. SSS provides post-hoc insights into local signal characteristics related to the SOZ, by visualizing temporally averaged local predictions throughout the signal. We evaluate our method on the Epilepsy intracranial electroencephalography (iEEG) Multicenter Dataset, a heterogeneous collection of iEEG recordings obtained from four independent medical centers. The proposed solution outperforms state-of-the-art (SOTA) baselines across most medical centers, and superior performance on all out-of-distribution (OOD) unseen medical centers.

变长时间序列分类(VTSC)问题在医疗保健应用中很普遍,例如心率监测和电生理记录,其中序列长度因患者和事件而异。VTSC具有挑战性,因为有限上下文模型(如Transformers)需要填充、截断或插值,这会导致输入数据失真、更高的计算成本和过拟合,而无限上下文模型(包括循环神经网络)则在长序列的过度压缩和不稳定梯度中挣扎。在本文中,我们开发了一种基于随机稀疏采样(SSS)的新的VTSC框架,用于癫痫发作区(SOZ)定位,这是一个关键的VTSC问题,需要从变长电生理时间序列中识别诱发癫痫的大脑区域。提出的框架稀疏采样时间序列窗口来计算局部预测,然后汇总和校准以形成全局预测。SSS通过可视化整个信号的时间平均局部预测,提供了与SOZ相关的局部信号特征的事后洞察。我们在癫痫颅内脑电图(iEEG)多中心数据集上评估了我们的方法,该数据集是来自四个独立医疗中心的iEEG记录的异质收集。所提出的解决方案在大多数医疗中心中优于最先进的(SOTA)基线,并且在所有未见过的(OOD)医疗中心中具有优越的性能。
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引用次数: 0
Multiplex Community Detection for Subgroup Identification within Functional Connectivity Networks. 功能连通性网络中子组识别的复用社团检测。
IF 4.5 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-12-24 DOI: 10.1109/TBME.2025.3647427
H Yang, M Ortiz-Bouza, T Vu, V D Calhoun, S Aviyente, T Adali

Identifying homogeneous subgroups with similar symptoms or neuropsychological patterns is essential for understanding the heterogeneity of psychotic disorders and advancing precision medicine, which enables tailored treatments based on patients' unique profiles. Existing data-driven methods, such as independent component analysis or independent vector analysis (ICA/IVA) applied to multi-subject functional magnetic resonance imaging (fMRI) data, have successfully revealed meaningful subgroups. However, these methods often rely on single-dimensional information, such as isolated functional networks, or assume uniform subgroup structures across all networks. Given the complexity of psychiatric disorders, exploring relationships across multiple functional networks can provide deeper insights into diagnostic heterogeneity. To address this, we propose a novel method that integrates cross-functional network information for subgroup identification by constructing multiplex networks from functional connectivity networks extracted from multi-subject resting-state fMRI data. Multiplex network-based community detection is then applied to identify both common communities spanning multiple networks and private communities specific to individual networks. Results from simulations and real-world fMRI data demonstrate the effectiveness of the proposed method. In a study of 464 psychotic patients, the identified subgroups exhibit significant differences in key functional areas, such as the default mode network (DMN) and anterior prefrontal cortex (antPFC), as well as corresponding clinical scores. These findings align with prior clinical studies, demonstrating the ability of the proposed approach to uncover clinically relevant subgroups and enhance understanding of psychotic disorder heterogeneity. By considering multi-dimensional information across functional networks, this approach provides a framework for understanding individual variability in psychotic disorders and paves the way for precision medicine.

识别具有相似症状或神经心理模式的同质亚群对于理解精神障碍的异质性和推进精准医学至关重要,精准医学可以根据患者的独特情况定制治疗。现有的数据驱动方法,如应用于多主体功能磁共振成像(fMRI)数据的独立分量分析或独立矢量分析(ICA/IVA),已经成功地揭示了有意义的亚群。然而,这些方法通常依赖于单维信息,例如孤立的功能网络,或者在所有网络中假设统一的子群结构。鉴于精神疾病的复杂性,探索跨多个功能网络的关系可以为诊断异质性提供更深入的见解。为了解决这个问题,我们提出了一种新的方法,通过从多受试者静息状态fMRI数据中提取的功能连接网络构建多路网络,将跨功能网络信息集成到亚群识别中。然后应用基于多路网络的社区检测来识别跨多个网络的公共社区和特定于单个网络的私有社区。仿真结果和实际fMRI数据验证了该方法的有效性。在一项对464名精神病患者的研究中,确定的亚组在关键功能区域(如默认模式网络(DMN)和前前额叶皮层(antPFC))以及相应的临床评分上表现出显著差异。这些发现与先前的临床研究相一致,证明了所提出的方法能够揭示临床相关的亚组,并增强对精神障碍异质性的理解。通过考虑跨功能网络的多维信息,这种方法为理解精神疾病的个体差异提供了一个框架,并为精准医学铺平了道路。
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IEEE Transactions on Biomedical Engineering
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