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Detection of Low Resilience Using Data-Driven Effective Connectivity Measures 利用数据驱动的有效连接措施检测低复原力。
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-20 DOI: 10.1109/TNSRE.2024.3465269
Ayman Siddiqui;Rumaisa Abu Hasan;Syed Saad Azhar Ali;Irraivan Elamvazuthi;Cheng-Kai Lu;Tong Boon Tang
Conventional thresholding techniques for graph theory analysis, such as absolute, proportional and mean degree, have often been used in characterizing human brain networks under different mental disorders, such as mental stress. However, these approaches may not always be reliable as conventional thresholding approaches are subjected to human biases. Using a mental resilience study, we investigate if data-driven thresholding techniques such as Global Cost Efficiency (GCE-abs) and Orthogonal Minimum Spanning Trees (OMSTs) could provide equivalent results, whilst eliminating human biases. We implemented Phase Slope Index (PSI) to compute effective brain connectivity, and applied data-driven thresholding approaches to filter the brain networks in order to identify key features of low resilience within a cohort of healthy individuals. Our dataset encompassed resting-state EEG recordings gathered from a total of 36 participants (31 females and 5 males). Relevant features were extracted to train and validate a classifier model (Support Vector Machine, SVM). The detection of low stress resilience among healthy individuals using the SVM model scores an accuracy of 80.6% with GCE-abs, and 75% with OMSTs, respectively.
用于图论分析的传统阈值技术,如绝对阈值、比例阈值和平均阈值,经常被用于描述不同精神障碍(如精神压力)下的人脑网络特征。然而,这些方法并不总是可靠的,因为传统的阈值方法会受到人为偏差的影响。我们利用一项心理复原力研究,探讨了全局成本效率(GCE-abs)和正交最小生成树(OMSTs)等数据驱动的阈值技术能否在消除人为偏差的同时提供同等的结果。我们采用相位斜率指数(PSI)计算有效的大脑连通性,并应用数据驱动的阈值方法过滤大脑网络,以识别健康人群中低复原力的关键特征。我们的数据集包括从 36 名参与者(31 名女性和 5 名男性)收集的静息状态脑电图记录。提取的相关特征用于训练和验证分类器模型(支持向量机,SVM)。使用 SVM 检测健康人的低应激恢复能力,GCE-abs 的准确率为 80.6%,OMSTs 的准确率为 75%。
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引用次数: 0
From Simulation to Reality: Predicting Torque With Fatigue Onset via Transfer Learning 从模拟到现实:通过迁移学习预测疲劳开始时的扭矩。
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-20 DOI: 10.1109/TNSRE.2024.3465016
Kalyn M. Kearney;Tamara Ordonez Diaz;Joel B. Harley;Jennifer A. Nichols
Muscle fatigue impacts upper extremity function but is often overlooked in biomechanical models. The present work leveraged a transfer learning approach to improve torque predictions during fatiguing upper extremity movements. We developed two artificial neural networks to model sustained elbow flexion: one trained solely on recorded data (i.e., direct learning) and one pre-trained on simulated data and fine-tuned on recorded data (i.e., transfer learning). We simulated muscle activations and joint torques using a musculoskeletal model and a muscle fatigue model (n = 1,701 simulations). We also recorded static subject-specific features (e.g., anthropometric measurements) and dynamic muscle activations and torques during sustained elbow flexion in healthy young adults (n = 25 subjects). Using the simulated dataset, we pre-trained a long short-term memory neural network (LSTM) to regress fatiguing elbow flexion torque from muscle activations. We concatenated this pre-trained LSTM with a feedforward architecture, and fine-tuned the model on recorded muscle activations and static features to predict elbow flexion torques. We trained a similar architecture solely on the recorded data and compared each neural network’s predictions on 5 leave-out subjects’ data. The transfer learning model outperformed the direct learning model, as indicated by a decrease of 24.9% in their root-mean-square-errors (6.22 Nm and 8.28 Nm, respectively). The transfer learning model and direct learning model outperformed analogous musculoskeletal simulations, which consistently underpredicted elbow flexion torque. Our results suggest that transfer learning from simulated to recorded datasets can decrease reliance on assumptions inherent to biomechanical models and yield predictions robust to real-world conditions.
肌肉疲劳会影响上肢功能,但在生物力学模型中却经常被忽视。本研究利用迁移学习方法来改进上肢疲劳运动时的扭矩预测。我们开发了两个人工神经网络来模拟肘关节的持续屈伸:一个仅根据记录数据进行训练(即直接学习),另一个根据模拟数据进行预训练,并根据记录数据进行微调(即迁移学习)。我们使用肌肉骨骼模型和肌肉疲劳模型模拟了肌肉激活和关节扭矩(n = 1,701 次模拟)。我们还记录了健康青壮年(n = 25 名受试者)在持续屈肘时的静态受试者特定特征(如人体测量)以及动态肌肉激活和扭矩。利用模拟数据集,我们预先训练了一个长短期记忆神经网络(LSTM),以便从肌肉激活中回归疲劳性肘屈扭矩。我们将这一预先训练好的 LSTM 与前馈结构结合起来,并根据记录的肌肉激活和静态特征对模型进行微调,以预测肘关节屈曲力矩。我们仅根据记录的数据训练了一个类似的架构,并比较了每个神经网络对 5 个遗漏受试者数据的预测结果。迁移学习模型的均方根误差(分别为 6.22 牛米和 8.28 牛米)降低了 24.9%,这表明迁移学习模型优于直接学习模型。迁移学习模型和直接学习模型的表现优于类似的肌肉骨骼模拟模型,后者对肘关节屈曲力矩的预测一直偏低。我们的研究结果表明,从模拟数据集到记录数据集的迁移学习可以减少对生物力学模型固有假设的依赖,并得出对真实世界条件更可靠的预测结果。
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引用次数: 0
Early Detection of Parkinson’s Disease Using Deep NeuroEnhanceNet With Smartphone Walking Recordings 利用智能手机步行记录的深度神经增强网络早期检测帕金森病
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-17 DOI: 10.1109/TNSRE.2024.3462392
Tongyue He;Junxin Chen;Xu Xu;Giancarlo Fortino;Wei Wang
With the development of digital medical technology, ubiquitous smartphones are emerging as valuable tools for the detection of complex and elusive diseases. This paper exploits smartphone walking recording for early detection of Parkinson’s disease (PD) and finds that walking recording empowered by deep learning is a valid digital biomarker for early-recognizing PD patients. Specifically, the inertial sensor data is preprocessed, including normalization, scaling, and rotation, and then the processed data is fed into the proposed deep NeuroEnhanceNet. Finally, determine the individual prediction score using the PD-prone strategy and generate the detection results. The proposed deep NeuroEnhanceNet, specifically designed for inertial sensor data, can focus on both the long-term data characteristics within a single channel and the inter-channel correlations. Our method obtains a low false negative rate of 0.053 for the early detection of PD. We further analyze and compare the effectiveness of digital biomarkers captured from the walking and resting processes for early detection of PD. All the code for this work is available at: https://github.com/heyiyia/NeuroEnhanceNet.
随着数字医疗技术的发展,无处不在的智能手机正成为检测复杂而难以捉摸的疾病的重要工具。本文利用智能手机的步行记录对帕金森病(PD)进行早期检测,发现深度学习增强的步行记录是早期识别帕金森病患者的有效数字生物标记。具体来说,先对惯性传感器数据进行预处理,包括归一化、缩放和旋转,然后将处理后的数据输入所提出的深度神经增强网络(NeuroEnhanceNet)。最后,使用 PD-prone 策略确定个人预测得分,并生成检测结果。所提出的深度神经增强网是专为惯性传感器数据设计的,既能关注单通道内的长期数据特征,也能关注通道间的相关性。我们的方法在早期 PD 检测中获得了 0.053 的低假阴性率。我们还进一步分析和比较了从行走和静息过程中捕获的数字生物标记物对早期检测帕金森病的有效性。这项工作的所有代码可在以下网址获取:https://github.com/heyiyia/NeuroEnhanceNet。
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引用次数: 0
Continuous Short-Term Pain Assessment in Temporomandibular Joint Therapy Using LSTM Models Supported by Heat-Induced Pain Data Patterns 利用热诱导疼痛数据模式支持的 LSTM 模型对颞下颌关节治疗中的短期疼痛进行连续评估
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-16 DOI: 10.1109/TNSRE.2024.3461589
Aleksandra Badura;Maria Bienkowska;Andrzej Mysliwiec;Ewa Pietka
This study aims to design a time-continuous pain level assessment system for temporomandibular joint therapy. Our objectives cover verifying literature suggestions on pain stimulus, protocols for collecting reference data, and continuous pain recognition models. We use two types of pain data acquired during 1) heat stimulation and 2) temporomandibular joint therapy. Thirty-six electrodermal activity (EDA) features are determined to build a binary classification model. The experimental dataset is used to train the initial model that produces pseudo-labels for weakly-labeled clinical data. In training the final long short-term memory (LSTM) model, we propose a novel multivariate loss involving, i.a., dynamometer data. Significant differences are found between EDA features extracted from experimental and clinical datasets in pain and no pain events. The classification model is validated at different stages of the model development. The final model classifies each four-second frame with a mean accuracy of 0.89 and an F1 score of 0.85. Our study introduces the dynamometer as a novel source of pain-feeling indications that meets the challenges given in the literature: data can be acquired in various procedures and from patients with limited abilities. The main contribution of the study is to design the first time-continuous and short-term pain assessment system for a clinical setting.
本研究旨在设计一种用于颞下颌关节治疗的时间连续性疼痛程度评估系统。我们的目标包括验证文献中关于疼痛刺激、参考数据收集协议和连续疼痛识别模型的建议。我们使用了在 1)热刺激和 2)颞下颌关节治疗过程中获取的两种疼痛数据。确定了三十六个皮电活动(EDA)特征,以建立二元分类模型。实验数据集用于训练初始模型,该模型可为弱标签临床数据生成伪标签。在训练最终的长短期记忆(LSTM)模型时,我们提出了一种涉及测力计数据的新型多变量损失。在疼痛和无痛事件中,从实验数据集和临床数据集提取的 EDA 特征之间存在显著差异。分类模型在模型开发的不同阶段进行了验证。最终模型对每个四秒帧进行分类的平均准确率为 0.89,F1 得分为 0.85。我们的研究将测力计作为一种新的痛感指标来源,以应对文献中提出的挑战:数据可以通过各种程序和能力有限的患者获得。这项研究的主要贡献在于为临床环境设计了首个时间连续的短期疼痛评估系统。
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引用次数: 0
Cortical ROI Importance Improves MI Decoding From EEG Using Fused Light Neural Network 利用融合光神经网络,大脑皮层 ROI 的重要性提高了从脑电图解码 MI 的能力。
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-16 DOI: 10.1109/TNSRE.2024.3461339
Linlin Wang;Mingai Li;Dongqin Xu;Yufei Yang
Decoding motor imagery (MI) using deep learning in cortical level has potential in brain computer interface based intelligent rehabilitation. However, a mass of dipoles is inconvenient to extract the personalized features and requires a more complex neural network. In consideration of the structural and functional similarity of the neurons in a neuroanatomical region, i.e., a region of interest (ROI), we propose that the comprehensive performance of each ROI may be reflected by a specific representative dipole (RD), and the time-frequency spectrums of all RDs are applied simultaneously to Random Forest algorithm to give a quantitative metric of each ROI importance (RI). Then, the more divided sub-band spectral powers are reinforced by RI, and they are interpolated to a 2-dimensional (2D) plane transformed from 3D space of all RDs, yielding an ensemble representation of RD feature image sequences (ERDFIS). Furthermore, a lightweight network, including 2D separable convolution and gated recurrent unit (2DSCG), is developed to extract and classify the frequency-spatial and temporal features from ERDFIS, forming a novel MI decoding method in cortical level (called ERDFIS-2DSCG). Based on two public datasets, the decoding accuracies of ten-fold cross-validation are 89.89% and 94.35%, respectively. The results suggest that RD can embody the overall property of ROI in time-frequency-space domains, and ROI importance is helpful to highlight the subject-based characteristics of MI-EEG. Meanwhile, 2DSCG is matched well with ERDFIS, jointly improving the decoding performance.
利用皮层深度学习对运动图像(MI)进行解码,在基于脑计算机接口的智能康复领域大有可为。然而,大量偶极子不便提取个性化特征,需要更复杂的神经网络。考虑到神经解剖区域(即感兴趣区(ROI))内神经元在结构和功能上的相似性,我们提出每个感兴趣区的综合表现可以通过一个特定的代表性偶极子(RD)来反映,并将所有 RD 的时频谱同时应用于随机森林算法,以给出每个感兴趣区重要性(RI)的量化指标。然后,通过 RI 强化较分散的子带频谱功率,并将其插值到从所有 RD 的三维空间转换而来的二维(2D)平面,从而得到 RD 特征图像序列的集合表示(ERDFIS)。此外,还开发了一种轻量级网络,包括二维可分离卷积和门控递归单元(2DSCG),用于从 ERDFIS 中提取频率-空间和时间特征并对其进行分类,从而形成一种新颖的皮层 MI 解码方法(称为 ERDFIS-2DSCG)。基于两个公开数据集,十倍交叉验证的解码准确率分别为 89.89% 和 94.35%。结果表明,RD能体现ROI在时频域的整体特性,ROI的重要性有助于突出MI-EEG的主体特征。同时,2DSCG与ERDFIS匹配良好,共同提高了解码性能。
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引用次数: 0
A Compact Graph Convolutional Network With Adaptive Functional Connectivity for Seizure Prediction 用于癫痫发作预测的具有自适应功能连接性的紧凑图卷积网络
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-13 DOI: 10.1109/TNSRE.2024.3460348
Boxuan Wei;Lu Xu;Jicong Zhang
Seizure prediction using EEG has significant implications for the daily monitoring and treatment of epilepsy patients. However, the task is challenging due to the underlying spatiotemporal correlations and patient heterogeneity. Traditional methods often use large-scale models with independent components to capture the spatial and temporal features of EEG separately or explore shared patterns among patients with the help of pre-defined functional connectivity. In this paper, we propose a compact model, called the graph convolutional network based on adaptive functional connectivity (AFC-GCN), for seizure prediction. The model can adaptively infer evolution of functional connectivity in epilepsy patients during seizures through data-driven methods and synchronously analyze spatiotemporal response of functional connectivity in multiple topologies. On CHB-MIT datasets, the experimental results demonstrate that AFC-GCN achieves accurate and robust performance with low complexity. (AUC: 0.9820, accuracy: 0.9815, sensitivity: 0.9802, FPR: 0.0172). The proposed method has the potential to predict seizure during daily monitoring.
利用脑电图预测癫痫发作对癫痫患者的日常监测和治疗具有重要意义。然而,由于潜在的时空相关性和患者的异质性,这项任务极具挑战性。传统方法通常使用具有独立成分的大规模模型来分别捕捉脑电图的空间和时间特征,或借助预定义的功能连接来探索患者之间的共享模式。在本文中,我们提出了一种用于癫痫发作预测的紧凑型模型,称为基于自适应功能连接的图卷积网络(AFC-GCN)。该模型能通过数据驱动方法自适应地推断癫痫患者发作时的功能连通性演变,并同步分析多种拓扑结构中功能连通性的时空响应。在 CHB-MIT 数据集上的实验结果表明,AFC-GCN 能够以较低的复杂度实现准确、稳健的性能。(AUC:0.9820;准确度:0.9815;灵敏度:0.9802;FPR:0.0172)。所提出的方法具有在日常监测中预测癫痫发作的潜力。
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引用次数: 0
Recurrent Neural Network Enabled Continuous Motion Estimation of Lower Limb Joints From Incomplete sEMG Signals 利用递归神经网络,从不完整的 sEMG 信号估算下肢关节的连续运动情况
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-13 DOI: 10.1109/TNSRE.2024.3459924
Gang Wang;Long Jin;Jiliang Zhang;Xiaoqin Duan;Jiang Yi;Mingming Zhang;Zhongbo Sun
Decoding continuous human motion from surface electromyography (sEMG) in advance is crucial for improving the intelligence of exoskeleton robots. However, incomplete sEMG signals are prevalent on account of unstable data transmission, sensor malfunction, and electrode sheet detachment. These non-ideal factors severely compromise the accuracy of continuous motion recognition and the reliability of clinical applications. To tackle this challenge, this paper develops a multi-task parallel learning framework for continuous motion estimation with incomplete sEMG signals. Concretely, a residual network is incorporated into a recurrent neural network to integrate the information flow of hidden states and reconstruct random and consecutive missing sEMG signals. The attention mechanism is applied for redistributing the distribution of weights. A jointly optimized loss function is devised to enable training the model for simultaneously dealing with signal anomalies/absences and multi-joint continuous motion estimation. The proposed model is implemented for estimating hip, knee, and ankle joint angles of physically competent individuals and patients during diverse exercises. Experimental results indicate that the estimation root-mean-square errors with 60% missing sEMG signals steadily converges to below 5 degrees. Even with multi-channel electrode sheet shedding, our model still demonstrates cutting-edge estimation performance, errors only marginally increase 1 degree.
提前从表面肌电图(sEMG)中解码连续的人体运动对于提高外骨骼机器人的智能至关重要。然而,由于数据传输不稳定、传感器故障和电极片脱落等原因,不完整的 sEMG 信号十分普遍。这些非理想因素严重影响了连续运动识别的准确性和临床应用的可靠性。为了应对这一挑战,本文开发了一种多任务并行学习框架,用于不完整 sEMG 信号下的连续运动估计。具体来说,在递归神经网络中加入残差网络,以整合隐藏状态的信息流,重建随机和连续缺失的 sEMG 信号。注意力机制用于重新分配权重。设计了一个联合优化的损失函数,以训练模型同时处理信号异常/缺失和多关节连续运动估计。所提出的模型可用于估计体能良好的个人和病人在各种运动中的髋关节、膝关节和踝关节角度。实验结果表明,在 sEMG 信号缺失率为 60% 的情况下,估算的均方根误差稳定收敛到 5 度以下。即使在多通道电极片脱落的情况下,我们的模型仍然表现出最先进的估计性能,误差仅略微增加 1 度。
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引用次数: 0
Restoring of Interhemispheric Symmetry in Patients With Stroke Following Bilateral or Unilateral Robot-Assisted Upper-Limb Rehabilitation: A Pilot Randomized Controlled Trial 恢复中风患者双侧或单侧机器人辅助上肢康复后大脑半球间的对称性:试点随机对照试验
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-13 DOI: 10.1109/TNSRE.2024.3460485
M. C. Mauro;A. Fasano;M. Germanotta;L. Cortellini;S. Insalaco;A. Pavan;A. Comanducci;E. Guglielmelli;I. G. Aprile
Bilateral robotic rehabilitation has proven helpful in the recovery of upper limb motor function in patients with stroke, but its effects on the cortical reorganization mechanisms underlying recovery are still unclear. This pilot Randomized Controlled Trial (RCT) aimed to evaluate the effects on the interhemispheric balance of unilateral or bilateral robotic treatments in patients with subacute stroke, using Quantitative Electroencephalography (qEEG). 19 patients with ischemic stroke underwent a 30-session upper limb neurorehabilitation intervention using a bilateral upper limb exoskeleton. Each patient was randomly assigned to the bilateral (BG, n=10) or unilateral treatment group (UG, n=9). EEG evaluations were performed before (T0) and right after (T $0+text {)}$ the first treatment session, after 30 treatment sessions (T1), and at 1-week follow-up (T2), in both eyes open and eyes closed conditions. From the acquired EEG data, the pairwise-derived Brain Symmetry Index (pdBSI) was computed. In addition, clinical evaluation was performed at T0 and T1 with validated clinical scales. After the treatment, a significant improvement in clinical and EEG evaluations was observed for both groups, but only the BG showed reduced pdBSI in delta and theta bands. In the cluster of sensorimotor channels, there was no significant difference between groups. The observed changes were not maintained at follow-up. No significant changes were observed in the pdBSI after a single rehabilitation session. Results suggest that balancing of interhemispheric symmetry comes along with a clinical improvement in the upper extremity and that the pdBSI can be used to investigate the mechanisms of neuronal plasticity involved in robotic rehabilitation after stroke.
事实证明,双侧机器人康复有助于中风患者上肢运动功能的恢复,但其对恢复所依赖的皮质重组机制的影响仍不清楚。这项试验性随机对照试验(RCT)旨在利用定量脑电图(qEEG)评估单侧或双侧机器人治疗对亚急性中风患者大脑半球间平衡的影响。19 名缺血性中风患者使用双侧上肢外骨骼接受了为期 30 个疗程的上肢神经康复干预。每位患者被随机分配到双侧治疗组(BG,n=10)或单侧治疗组(UG,n=9)。在第一次治疗前(T0)和治疗后(T $0+text {)}$、30 次治疗后(T1)以及随访 1 周时(T2),分别在睁眼和闭眼状态下进行脑电图评估。根据所获得的脑电图数据,计算出对源脑对称性指数(pdBSI)。此外,在 T0 和 T1 期 间,还使用经过验证的临床量表进行了临床评估。治疗后,两组患者的临床和脑电图评估结果均有明显改善,但只有 BG 在 delta 和 theta 波段的 pdBSI 有所下降。在感觉运动通道群方面,两组之间没有明显差异。观察到的变化在后续治疗中没有得到维持。在单次康复训练后,pdBSI 也未观察到明显变化。结果表明,大脑半球间对称性的平衡伴随着上肢临床症状的改善,pdBSI 可用于研究中风后机器人康复所涉及的神经元可塑性机制。
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引用次数: 0
Development and Evaluation of a Real-Time Phase-Triggered Stimulation Algorithm for the CorTec Brain Interchange 开发和评估用于 CorTec Brain Interchange 的实时相位触发刺激算法
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-12 DOI: 10.1109/TNSRE.2024.3459801
Hanbin Cho;Moaad Benjaber;C. Alexis Gkogkidis;Marina Buchheit;Juan F. Ruiz-Rodríguez;Benjamin L. Grannan;Kurt E. Weaver;Andrew L. Ko;Steven C. Cramer;Jeffrey G. Ojemann;Timothy Denison;Jeffrey A. Herron
With the development and characterization of biomarkers that may reflect neural network state as well as a patient’s clinical deficits, there is growing interest in more complex stimulation designs. While current implantable neuromodulation systems offer pathways to expand the design and application of adaptive stimulation paradigms, technological drawbacks of these systems limit adaptive neuromodulation exploration. In this paper, we discuss the implementation of a phase-triggered stimulation paradigm using a research platform composed of an investigational system known as the CorTec Brain Interchange (CorTec GmbH, Freiburg, Germany), and an open-source software tool known as OMNI-BIC. We then evaluate the stimulation paradigm’s performance in both benchtop and in vivo human demonstrations. Our findings indicate that the Brain Interchange and OMNI-BIC platform is capable of reliable administration of phase-triggered stimulation and has the potential to help expand investigation within the adaptive neuromodulation design space.
随着可反映神经网络状态和患者临床缺陷的生物标志物的开发和鉴定,人们对更复杂的刺激设计越来越感兴趣。虽然目前的植入式神经调控系统为扩大自适应刺激范例的设计和应用提供了途径,但这些系统的技术缺陷限制了自适应神经调控的探索。在本文中,我们讨论了利用一个研究平台实施相位触发刺激范式,该平台由一个名为 CorTec Brain Interchange(CorTec GmbH,德国弗莱堡)的研究系统和一个名为 OMNI-BIC 的开源软件工具组成。然后,我们评估了刺激范式在台式和活体人体演示中的性能。我们的研究结果表明,Brain Interchange 和 OMNI-BIC 平台能够可靠地实施相位触发刺激,并有可能帮助扩大自适应神经调制设计领域的研究范围。
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引用次数: 0
Effects of Individual Research Practices on fNIRS Signal Quality and Latent Characteristics 个人研究实践对 fNIRS 信号质量和潜在特征的影响
IF 4.8 2区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-09-11 DOI: 10.1109/TNSRE.2024.3458396
Andrea Bizzego;Alessandro Carollo;Mengyu Lim;Gianluca Esposito
Functional near-infrared spectroscopy (fNIRS) is an increasingly popular tool for cross-cultural neuroimaging studies. However, the reproducibility and comparability of fNIRS studies is still an open issue in the scientific community. The paucity of experimental practices and the lack of clear guidelines regarding fNIRS use contribute to undermining the reproducibility of results. For this reason, much effort is now directed at assessing the impact of heterogeneous experimental practices in creating divergent fNIRS results. The current work aims to assess differences in fNIRS signal quality in data collected by two different labs in two different cohorts: Singapore (N=74) and Italy (N=84). Random segments of 20s were extracted from each channel in each participant’s NIRScap and 1280 deep features were obtained using a deep learning model trained to classify the quality of fNIRS data. Two datasets were generated: ALL dataset (segments with bad and good data quality) and GOOD dataset (segments with good quality). Each dataset was divided into train and test partitions, which were used to train and evaluate the performance of a Support Vector Machine (SVM) model in classifying the cohorts from signal quality features. Results showed that the SG cohort had significantly higher occurrences of bad signal quality in the majority of the fNIRS channels. Moreover, the SVM correctly classified the cohorts when using the ALL dataset. However, the performance dropped almost completely (except for five channels) when the SVM had to classify the cohorts using data from the GOOD dataset. These results suggest that fNIRS raw data obtained by different labs might possess different levels of quality as well as different latent characteristics beyond quality per se. The current study highlights the importance of defining clear guidelines in the conduction of fNIRS experiments in the reporting of data quality in fNIRS manuscripts.
功能性近红外光谱(fNIRS)是一种越来越受欢迎的跨文化神经成像研究工具。然而,在科学界,fNIRS 研究的可重复性和可比性仍是一个悬而未决的问题。实验实践的匮乏以及缺乏有关 fNIRS 使用的明确指南,都是影响研究结果可重复性的原因。因此,目前人们正努力评估不同实验方法对产生不同 fNIRS 结果的影响。目前的工作旨在评估两个不同实验室在两个不同队列中收集的数据中 fNIRS 信号质量的差异:新加坡(N=74)和意大利(N=84)。从每位参与者的 NIRScap 的每个通道中提取 20 秒的随机片段,并使用训练有素的深度学习模型获得 1280 个深度特征,以对 fNIRS 数据的质量进行分类。生成了两个数据集:ALL数据集(数据质量差和数据质量好的片段)和GOOD数据集(数据质量好的片段)。每个数据集被分为训练分区和测试分区,用于训练和评估支持向量机(SVM)模型根据信号质量特征对组群进行分类的性能。结果显示,在大多数 fNIRS 信道中,SG 队列的不良信号质量发生率明显较高。此外,在使用 ALL 数据集时,SVM 能正确地对队列进行分类。然而,当 SVM 必须使用 GOOD 数据集的数据对队列进行分类时,其性能几乎完全下降(五个通道除外)。这些结果表明,不同实验室获得的 fNIRS 原始数据可能具有不同的质量水平,以及超出质量本身的不同潜在特征。本研究强调,在进行 fNIRS 实验时,必须制定明确的指导原则,以便在 fNIRS 手稿中报告数据质量。
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引用次数: 0
期刊
IEEE Transactions on Neural Systems and Rehabilitation Engineering
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