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Investigation of a Family Cluster of Human Infections With Highly Pathogenic Avian Influenza A(H5N1) Virus, Clade 2.3.2.1e, in Cambodia, February 2023 2023年2月柬埔寨一起人感染高致病性禽流感a (H5N1)病毒分支2.3.2.1e家庭聚集性病例调查
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-05 DOI: 10.1111/irv.70231
Savuth Chin, Chansovannara Soputhy, Heng Seng, Sokly Mom, Borann Sar, Alyssa Finlay, Kathrine R. Tan, Philip L. Gould, Jurre Y. Siegers, Erik A. Karlsson, Sonja J. Olsen, Timothy M. Uyeki, William W. Davis, Darapheak Chau, Sovann Ly

In February 2023, an 11-year-old girl in Cambodia developed severe respiratory symptoms and died of pneumonia and respiratory failure after testing positive for influenza A(H5). Contract tracing and testing identified her father as positive for influenza A(H5). Investigations revealed both were likely exposed to the same sick and dead poultry. Control measures included culling sick poultry and providing health education in the community on handling infected birds. Highly pathogenic avian influenza A(H5N1) viruses continue to pose public health risks in Cambodia.

2023年2月,柬埔寨一名11岁女孩出现严重呼吸道症状,并在甲型流感(H5)检测呈阳性后死于肺炎和呼吸衰竭。合同追踪和检测确定她的父亲对甲型H5流感呈阳性反应。调查显示,两人可能接触过相同的病禽和死禽。控制措施包括扑杀病禽和在社区提供处理受感染禽鸟的健康教育。高致病性甲型H5N1禽流感病毒继续在柬埔寨构成公共卫生风险。
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引用次数: 0
The Burden of Respiratory Syncytial Virus in Children With Acute Otitis Media: A Systematic Review and Meta-Analysis 急性中耳炎患儿呼吸道合胞病毒负担:系统回顾和荟萃分析
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-04 DOI: 10.1111/irv.70223
Sebastien Kenmoe, Marshall Dozier, Jingyi Liang, Ruth Jenkins, Harish Nair

Background

Acute otitis media (AOM) affects over 709 million individuals globally each year, more than half of whom are children < 5 years. Respiratory syncytial virus (RSV) is a leading viral cause of pediatric respiratory illness. We aimed to estimate the burden of RSV in children < 5 years with AOM

Methods

We performed a systematic review of studies reporting RSV identified through laboratory testing in children < 5 years with AOM. We searched eight databases from January 1, 1996, to May 9, 2025. We extracted data on RSV proportion in AOM and on co-detection of bacterial pathogens. We reported pooled proportions using random-effects meta-analysis.

Results

We included 27 studies encompassing 8342 children with AOM. The pooled proportion of RSV in children with AOM was 16.9% (95% CI 11.0–23.8, I2 = 94.9%). RSV proportion was higher in inpatient-based studies, in studies conducted during peak RSV seasons, and in children aged < 12 months. Among RSV-positive AOM cases, an estimated 67.4% (95% CI 15.4–100) had at least one bacterial co-detection. The most frequent bacteria co-detected were Streptococcus pneumoniae, followed by Haemophilus influenzae and Moraxella catarrhalis.

Conclusion

RSV is a common contributor to AOM in children < 5 years. Our findings indicate that RSV-associated AOM often involves concurrent bacterial detection. These results highlight the potential impact of recently introduced passive RSV immunization, such as maternal immunization and long-acting monoclonal antibody, in reducing AOM incidence and its complications. Preventing RSV in early childhood could lower the overall burden of AOM and decrease the need for antibiotics.

背景:急性中耳炎(AOM)每年影响全球超过7.09亿人,其中一半以上是儿童。结果:我们纳入了27项研究,包括8342名患有AOM的儿童。AOM患儿RSV合并比例为16.9% (95% CI 11.0 ~ 23.8, I2 = 94.9%)。基于住院患者的研究、RSV高发季节进行的研究以及年龄较大的儿童RSV比例较高。结论:RSV是儿童AOM的常见诱因
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引用次数: 0
Individual and Environmental Factors Influencing Influenza Transmission: A Multilevel Analysis 影响流感传播的个体和环境因素:一个多水平分析。
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-04 DOI: 10.1111/irv.70232
Nushrat Nazia, Eleanor Pullenayegum, Mark Loeb

Background

Influenza transmission is influenced by both individual characteristics and community-level drivers. Understanding how these drivers jointly influence transmission is important to predicting outbreaks and guiding influenza prevention strategies. Our study aimed to assess individual and colony-level influences, including vaccination and environmental factors, on influenza transmission in the Hutterite communities.

Methods

We analyzed data from 3271 individuals in 46 Canadian Hutterite colonies during the 2008 influenza season. Weekly PCR-confirmed Influenza A and B outcomes were examined in relation to demographic, vaccination, geographic, and weather variables using multilevel Bayesian hierarchical models in Integrated Nested Laplace Approximations (INLA), which accounted for colony clustering and temporal autocorrelation.

Results

Of the 3271 participants, 239 (7.3%) had PCR-confirmed influenza (128 Influenza A and 111 Influenza B cases). Older age was found to be protective, especially for Influenza B, while males had slightly lower odds than females. Individual vaccination showed little effect, while colony assignment to influenza vaccination was associated with a lower risk of Influenza A and overall Influenza (A/B). Higher weekly mean temperatures were associated with lower odds of Influenza A but with higher odds of Influenza B. Precipitation showed weak associations, and geographic factors such as elevation and distance to the nearest city suggested possible protective effects, but results were imprecise.

Conclusions

Our findings suggest that influenza risk in Hutterite colonies is associated with local environmental and geographic characteristics in addition to the individual drivers. Incorporating the community-level environmental setting in influenza surveillance may improve preparedness for future outbreaks.

背景:流感传播受到个体特征和社区驱动因素的双重影响。了解这些驱动因素如何共同影响传播对于预测疫情和指导流感预防战略非常重要。我们的研究旨在评估个体和群体水平的影响,包括疫苗接种和环境因素,对huterite社区流感传播的影响。方法:我们分析了2008年流感季节来自46个加拿大胡特人聚居区的3271人的数据。利用集成嵌套拉普拉斯近似(INLA)中的多层次贝叶斯层次模型,研究了每周pcr确诊的甲型和乙型流感结果与人口统计学、疫苗接种、地理和天气变量的关系,该模型考虑了群体聚类和时间自相关。结果:在3271名参与者中,239人(7.3%)患有pcr确诊的流感(128例甲型流感和111例乙型流感)。年龄较大被发现具有保护作用,尤其是对乙型流感,而男性的患病几率略低于女性。个体疫苗接种效果不大,而流感疫苗的群体分配与甲型流感和整体流感(a /B)的风险较低有关。较高的周平均气温与较低的甲型流感发病率相关,但与较高的乙型流感发病率相关。降水表现出较弱的相关性,地理因素,如海拔和距离最近的城市,表明可能有保护作用,但结果并不精确。结论:我们的研究结果表明,除了个体驱动因素外,Hutterite群体的流感风险还与当地环境和地理特征有关。将社区层面的环境环境纳入流感监测可改善对未来疫情的防范。
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引用次数: 0
Impact of the COVID-19 Pandemic on Mortality Patterns in Bushehr Port of Iran: A Comparative Analysis of the Prepandemic Period (2014-2019) and the Pandemic Era (2020-2023). 2019冠状病毒病大流行对伊朗布什尔港死亡模式的影响:大流行前期(2014-2019年)和大流行时期(2020-2023年)的比较分析
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-01 DOI: 10.1111/irv.70220
Ali Soleimaninejad, Mouhebat Vali, Mohammad Al Qadire, Abdolrahim Asadollahi

Background: Industrial and coastal regions may experience unique pandemic-related mortality patterns, yet data from Middle Eastern occupational cohorts are extremely limited.

Methods: In this retrospective cohort study, we analyzed 58,976 deaths in Bushehr Province, Iran (2014-2023). Autoregressive integrated moving average (ARIMA) models were used to estimate excess mortality, and Poisson regression calculated standardized mortality ratios (SMRs) by occupation and sex.

Results: During the pandemic period (2020-2022), excess mortality reached 15.1%, peaking at 75% during the Delta wave. Males had 2.2 times higher mortality than females. The highest occupational mortality was among fishermen (SMR = 1.89, 95% CI: 1.75-2.04). Despite 78% vaccination coverage, acute myocardial infarction deaths increased by 27.3% (p < 0.001), comprising 41% of deaths during the BA.5 wave.

Conclusion: Significant disparities in COVID-19 mortality were observed by sex and occupation. Industrial workers, particularly males, require targeted public health strategies, including workplace-based vaccination and cardiovascular screening.

背景:工业和沿海地区可能经历独特的大流行相关死亡模式,但来自中东职业队列的数据极为有限。方法:在这项回顾性队列研究中,我们分析了2014-2023年伊朗布什尔省58,976例死亡病例。采用自回归综合移动平均(ARIMA)模型估计超额死亡率,泊松回归计算按职业和性别划分的标准化死亡率(SMRs)。结果:在大流行期间(2020-2022年),超额死亡率达到15.1%,在三角洲波期间达到75%的峰值。男性的死亡率是女性的2.2倍。职业死亡率最高的是渔民(SMR = 1.89, 95% CI: 1.75-2.04)。尽管疫苗接种率为78%,但急性心肌梗死死亡人数增加了27.3% (p)。结论:COVID-19死亡率在性别和职业方面存在显著差异。产业工人,特别是男性,需要有针对性的公共卫生战略,包括工作场所疫苗接种和心血管筛查。
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引用次数: 0
Comparison of Hospitalization Rates and Clinical Features Between Boys and Girls With Respiratory Syncytial Virus Infection 呼吸道合胞病毒感染男童与女童住院率及临床特征比较
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-31 DOI: 10.1111/irv.70235
Erika Uusitupa, Matti Waris, Tytti Vuorinen, Terho Heikkinen

Background

Male sex is a well-known risk factor for respiratory syncytial virus (RSV) hospitalization in children, but there are no data on potential differences in clinical features between boys and girls hospitalized with RSV infection.

Methods

We compared the average population-based rates of hospitalization and the clinical features of the illness between boys and girls hospitalized with virologically confirmed RSV infection during 2006–2020 at Turku University Hospital, Finland. During this period, testing for RSV was routine in all children admitted with respiratory infections. The comparisons were performed in different age groups of children up to 5 years of age.

Results

Among all 1204 children < 5 years of age hospitalized with RSV, the average annual RSV hospitalization rates were 4.0/1000 in boys and 3.3/1000 in girls (incidence rate ratio [IRR] 1.21; 95% CI, 1.07–1.35; p = 0.001). The difference was greatest in children aged 3–23 months, among whom the corresponding rates were 5.4/1000 in boys and 3.6/1000 in girls (IRR, 1.50; 95% CI, 1.25–1.80; p < 0.001). The occurrence of respiratory distress was consistently higher in boys than in girls among children aged 6–17 months. In this group of 233 children, 128 of 141 (90.8%) boys had documented respiratory distress, compared with 70 of 92 (76.1%) girls (p = 0.002).

Conclusions

Except for the first 3 months after birth, boys have a 50% higher risk of RSV hospitalization than girls during the first 2 years of life. In that same age group, boys hospitalized with RSV have also significantly more respiratory distress than girls.

背景:男性是儿童呼吸道合胞病毒(RSV)住院的一个众所周知的危险因素,但没有数据表明男孩和女孩因RSV感染住院的临床特征存在潜在差异。方法:我们比较了2006-2020年在芬兰图尔库大学医院病毒学确诊的RSV感染住院的男孩和女孩的平均基于人群的住院率和疾病的临床特征。在此期间,对所有呼吸道感染入院的儿童进行了RSV常规检测。比较是在不同年龄组的儿童中进行的,直到5岁。结果:1204例患儿中,除出生后3个月外,男孩在出生后2年内发生RSV住院的风险比女孩高50%。在同一年龄组中,因呼吸道合胞病毒住院的男孩也明显比女孩有更多的呼吸窘迫。
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引用次数: 0
Early COVID-19 and Severity of Subsequent Omicron Infection in Ontario Canada 加拿大安大略省早期COVID-19和随后组粒感染的严重程度
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-12 DOI: 10.1111/irv.70197
Caroline Kassee, Altynay Shigayeva, Christopher Kandel, Lubna Farooqi, Zoe Zhong, Anne-Claude Gingras, Brenda L. Coleman, Lois Gilbert, Wayne L. Gold, Maria Major, Tony Mazzulli, Samira Mubareka, Srinivas Rao Valluri, Catherine Martin, Moe H. Kyaw, John M. McLaughlin, Allison McGeer

We evaluated whether having early COVID-19 reduced the severity of subsequent Omicron infection, assessing activities of daily living (ADL), healthcare utilization and illness duration. Comparisons were made between persons with (1) early COVID-19-compatible illness with a negative test, (2) early lab-confirmed SARS-CoV-2 14–26 months and (3) early lab-confirmed SAR-CoV-2 > 26 months before Omicron infection. Among 261 patients with laboratory-confirmed Omicron, 177 (68%) had COVID-19 in 2020, a median of 793 days (IQR, 659–902) prior to Omicron infection. Compared to no early COVID-19, COVID-19 14–26 months, but not > 26 months, before was associated with reduced impact on ADL during first Omicron infection (OR 0.52, 95% CI 0.29–0.93).

我们评估了早期感染COVID-19是否降低了随后欧米克隆感染的严重程度,评估了日常生活活动(ADL)、医疗保健利用和疾病持续时间。比较:(1)早期covid -19相容疾病检测阴性的人,(2)早期实验室确诊的SARS-CoV-2 14-26个月和(3)早期实验室确诊的SARS-CoV-2 26个月感染欧米克隆。在261名实验室确诊的Omicron患者中,有177人(68%)在2020年感染了COVID-19,在感染Omicron之前的中位时间为793天(IQR, 659-902)。与未感染早期COVID-19相比,感染前14-26个月的COVID-19与首次感染Omicron期间ADL的影响降低相关(OR 0.52, 95% CI 0.29-0.93)。
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引用次数: 0
Changes in the Epidemiology of Influenza and Respiratory Syncytial Virus During 2020–2022 Relative to the Pre-COVID-19 Pandemic Period (2017–2020) From Systematic Sentinel Syndromic Surveillance in South Africa 来自南非系统哨点综合征监测的2020-2022年流感和呼吸道合胞病毒流行病学与covid -19大流行前(2017-2020年)的变化
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-11 DOI: 10.1111/irv.70207
Sibongile Walaza, Jocelyn Moyes, Anne von Gottberg, Nicole Wolter, Amelia Buys, Fahima Moosa, Mignon du Plessis, Gary Reubenson, Jeremy Nel, Heather J. Zar, Halima Dawood, Ebrahim Variava, Mvuyo Makhasi, Omphile Mekgoe, Fathima Nabby, Neydis Baute, Jackie Kleynhans, Susan Meiring, Vanessa Quan, Cheryl Cohen

Background

Nonpharmaceutical interventions, implemented during the COVID-19 pandemic, affected the transmission of other respiratory pathogens.

Methods

Systematically collected respiratory illness surveillance data and consistent case definitions were used to describe changes in influenza and respiratory syncytial virus (RSV)–associated outpatient visits and hospitalisations in South Africa during the first 3 years of the COVID-19 pandemic relative to a pre-COVID-19 pandemic period (2017–2019).

Results

In 2020, influenza circulation almost ceased. In 2021 an out-of-season circulation was observed with a return to prepandemic timing, albeit with a higher peak in 2022. During the pandemic period, influenza-associated influenza-like illness (ILI) was more common in those aged ≥ 5 years compared to < 6 months. Patients with influenza-associated severe respiratory illness (SRI) were less likely to be ≥ 45 years versus < 6 months and less likely to be admitted to ICU (aOR 0.2, 95% CI 0.04–0.8).

RSV circulation declined at the start of the pandemic, with an out-of-season spring resurgence in 2020 followed by a return to prepandemic timing in 2021 and a higher peak in 2022. During the pandemic, compared to the prepandemic period, patients with RSV-associated SRI were more likely to be aged 1–4 years (aOR 1.5, 95% CI 1.2–1.8) versus < 6 months and less likely to be admitted to ICU (aOR 0.5, 95% CI 0.3–0.8).

Conclusion

We report low levels of influenza circulation and out-of-season RSV circulation in 2020 with changes in the age distribution of cases and risk of ICU admission. Return to prepandemic timing was earlier for RSV, with higher seasonal peaks for influenza-associated ILI and RSV-associated SRI in 2022.

背景:在COVID-19大流行期间实施的非药物干预措施影响了其他呼吸道病原体的传播。方法:采用系统收集的呼吸道疾病监测数据和一致的病例定义来描述2019冠状病毒大流行前3年(2017-2019年)南非流感和呼吸道合胞病毒(RSV)相关门诊就诊和住院情况的变化。结果:2020年流感流行基本停止。2021年观察到非季节性传播,并回到大流行前的时间,尽管在2022年出现了更高的峰值。在流感大流行期间,流感相关的流感样疾病(ILI)在年龄≥5岁的人群中更为常见。结论:我们报告2020年流感流行和淡季RSV流行水平较低,病例年龄分布和ICU入院风险发生变化。呼吸道合胞病毒回归大流行前的时间较早,与流感相关的ILI和与呼吸道合胞病毒相关的SRI的季节性高峰在2022年较高。
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引用次数: 0
Influenza Surveillance in the Central African Republic From 2015 to 2018 to Inform Vaccination and Treatment Strategies 2015年至2018年中非共和国流感监测为疫苗接种和治疗战略提供信息。
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-09 DOI: 10.1111/irv.70221
Giscard Francis Komoyo, Chantal J. Snoeck, Rod S. Daniels, Marie R. Belizaire, Judith M. Hübschen, Claude P. Muller, Pierre Somse, Yap Boum II, Emmanuel Nakoune, John W. McCauley

Background

Surveillance of influenza infections and virus characterisation are essential to guide prevention strategies. In the Central African Republic (CAR), data on influenza viruses are patchy and poorly documented.

Objective

To study the clinical, seasonal, genetic and phenotypic characteristics of influenza viruses circulating in the CAR population.

Materials and Methods

From January 2015 to December 2018, the presence of influenza A and B viruses in patients presenting with influenza-like illness (ILI) symptoms or severe acute respiratory infections (SARI) was investigated by RT-qPCR. Influenza genetic diversity was evaluated by phylogenetic analyses, and antigenic properties were investigated by haemagglutination inhibition assays, whereas reduced susceptibility to neuraminidase inhibitors was assessed through the presence of known genetic markers and neuraminidase assay. The relationship between patients' clinical characteristics and infection status was investigated using statistical analyses.

Results

Over the surveillance period influenza viruses were detected in 9.7% of samples (n = 6134), with the highest intensity of circulation occurring in 2016 (15.8%), attributed mainly to A(H3N2). Periods of increased influenza transmission (June to October) generally coincided with rainy seasons; however, variations in terms of monthly distribution of cases between years were evident. Hospitalisation rates (SARI) were most frequent in infants (0–11 months, 37.9%) and young children (1–4 years, 24.8%), whereas influenza prevalences were highest in the 15–49 (12.0%) and ≥ 50 (15.2%) years old categories. A new A(H1N1)pdm09 6B.1 hemagglutinin subgroup characterised by amino acid substitutions S84N, S162N and I216T was detected in 2015, with associated antigenic drift, and subsequently, two of these viruses showed highly reduced inhibition by oseltamivir.

Conclusion

This study showcases the value of local influenza sentinel networks to specifically inform vaccination strategies and highlights the need for improved strain characterisation in tropical regions.

背景:流感感染监测和病毒特征对指导预防策略至关重要。在中非共和国(CAR),关于流感病毒的数据参差不齐且记录不完整。目的:研究CAR - CAR人群流行的流感病毒的临床、季节、遗传和表型特征。材料与方法:采用RT-qPCR方法对2015年1月至2018年12月出现流感样疾病(ILI)或严重急性呼吸道感染(SARI)的患者进行甲型和乙型流感病毒的检测。通过系统发育分析评估流感遗传多样性,通过血凝抑制试验研究抗原性,而通过已知遗传标记和神经氨酸酶试验评估对神经氨酸酶抑制剂的易感性降低。采用统计学方法分析患者临床特征与感染状况的关系。结果:监测期间,9.7%的样本(6134份)检出流感病毒,其中2016年流行强度最高(15.8%),主要由甲型H3N2病毒传播。流感传播增加的时期(6月至10月)通常与雨季同时发生;但是,不同年份间病例的月分布情况明显不同。住院率(SARI)在婴儿(0-11个月,37.9%)和幼儿(1-4岁,24.8%)中最为常见,而流感患病率在15-49岁(12.0%)和≥50岁(15.2%)年龄组中最高。一种新的A(H1N1)pdm09 6B。2015年检测到以氨基酸取代S84N、S162N和I216T为特征的1个血凝素亚群,并伴有抗原漂移,随后,其中两种病毒对奥司他韦的抑制作用高度降低。结论:本研究显示了当地流感哨点网络在为疫苗接种策略提供具体信息方面的价值,并强调了改善热带地区菌株特征的必要性。
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引用次数: 0
Novel Astrovirus Detected in Nasal Swabs of Sick Cattle, Mexico 墨西哥病牛鼻拭子中检出新型星状病毒。
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-08 DOI: 10.1111/irv.70226
Judith U. Oguzie, Gustavo Hernandez-Vidal, Gustavo Moreno-Degollado, Lyudmyla V. Marushchak, Jessica Rodriguez, Gregory C. Gray
<p>The <i>Astroviridae</i> family, historically associated with mild enteric and neurological symptoms, is now divided into two genera: <i>Mamastrovirus</i> (MAstV), which infects mammals, and <i>Avastrovirus</i> (AAstV), which infects avian species [<span>1</span>]. Three avastrovirus species are currently recognized to infect chickens, ducks, and turkeys. Nineteen mamastrovirus species (MAstV1–19) are currently recognized to infect diverse animal hosts, including cattle [<span>1</span>]. Four mamastroviruses (MAstV1, MAstV6, MAstV8, and MAstV9) have been found to also infect humans, further underscoring their zoonotic potential.</p><p>Bovine astrovirus (BoAstV) is an emerging group of unclassified mamastrovirus, namely, MAstV13, MAstV28–30, and MAstV33–35, of growing concern for cattle health and, within a One Health framework, may also have implications for human health [<span>2</span>]. Despite its apparent widespread distribution, the burden of BoAstV in cattle remains poorly defined. Limited surveillance and underdiagnosis likely obscure its contribution to enteric and respiratory disease, particularly in young calves where infection may drive morbidity, impair growth, and lead to economic losses. In addition, the epidemiology and genetic diversity of BoAstV in Latin America, and specifically in Mexico, remain largely uncharacterized.</p><p>Here we report, to our knowledge, the first detection and genomic characterization of BoAstV in cattle nasal swab specimens collected on Mexican farms. From February 2024 to May 2025, we conducted surveillance for novel coronavirus on Mexican cattle farms, where we collected nasal swabs from 40 cattle with respiratory signs. RNA was extracted from each nasal swab using the QIAamp Viral RNA Mini Kit on the QIAcube Connect automated system (QIAGEN Inc., Valencia, CA), and afterwards, we studied them with molecular assays for respiratory viruses. Among these samples, we selected 14 specimens for further study with metagenomic next-generation sequencing based on molecular detection of influenza D virus or coronavirus via our pan-coronavirus assay. Metagenomic sequencing libraries were prepared following a previously described workflow [<span>3</span>] and sequenced on either the Illumina NovaSeq X or Aviti platform. Sequencing data were analyzed on the CZ ID platform, and contigs with similarity to bovine astrovirus were identified and further characterized by BLAST analysis, phylogenetic reconstruction, and genotype assignment. Of the 14 specimens sequenced, we identified BoAstV contigs in three nasal swabs collected from cattle showing signs of respiratory disease, including fever and nasal discharge. Two of these specimens were also positive for influenza D virus, and one was positive for bovine coronavirus.</p><p>We aligned the three genomes (GenBank accession numbers PX692891–PX692893) with representative BoAstV genomes from NCBI using MAFFT v7.526 [<span>4</span>]. A maximum-likelihood phylogenetic tre
星形病毒科历史上与轻度肠道和神经系统症状相关,现在分为两个属:感染哺乳动物的乳突病毒(MAstV)和感染鸟类[1]的乳突病毒(AAstV)。目前已知有三种阿瓦斯特病毒可感染鸡、鸭和火鸡。目前已确认19种乳突病毒(MAstV1-19)可感染多种动物宿主,包括牛乳突病毒。已发现四种乳腺病毒(MAstV1、MAstV6、MAstV8和MAstV9)也可感染人类,进一步强调了它们的人畜共患潜力。牛星形病毒(BoAstV)是一种新兴的未分类乳突病毒,即MAstV13、MAstV28-30和MAstV33-35,对牛的健康日益引起关注,并且在“同一个健康”框架内,也可能对人类健康产生影响。尽管BoAstV明显分布广泛,但其对牛的影响仍不明确。有限的监测和诊断不足可能掩盖了其对肠道和呼吸道疾病的影响,特别是在年幼的小牛中,感染可能导致发病率,损害生长并导致经济损失。此外,在拉丁美洲,特别是在墨西哥,BoAstV的流行病学和遗传多样性在很大程度上仍然是未知的。据我们所知,在墨西哥农场收集的牛鼻拭子标本中首次检测到BoAstV并进行了基因组鉴定。从2024年2月到2025年5月,我们对墨西哥养牛场进行了新型冠状病毒监测,收集了40头有呼吸道体征的牛的鼻拭子。使用QIAcube Connect自动系统(QIAGEN Inc., Valencia, CA)上的QIAamp病毒RNA迷你试剂盒从每个鼻拭子中提取RNA,然后用呼吸道病毒分子检测对其进行研究。在这些样本中,我们选择了14份样本进行基于泛冠状病毒检测的D型流感病毒或冠状病毒的新一代宏基因组测序进一步研究。根据先前描述的工作流程[3]准备宏基因组测序文库,并在Illumina NovaSeq X或Aviti平台上进行测序。测序数据在CZ ID平台上进行分析,通过BLAST分析、系统发育重建和基因型分配,鉴定出与牛星状病毒相似的contigs。在测序的14个标本中,我们在从有呼吸道疾病迹象(包括发烧和鼻分泌物)的牛身上采集的3个鼻拭子中发现了BoAstV病毒。其中两个标本也呈D型流感病毒阳性,一个标本呈牛冠状病毒阳性。我们使用MAFFT v7.526[4]将三个基因组(GenBank登录号PX692891-PX692893)与NCBI的代表性BoAstV基因组进行比对。采用GTR + F + G4替代模型,在IQ-TREE中重构了最大似然系统发育树,并进行了1000次bootstrap重复,以评估节点支持度[5]。结果树在FigTree v1.4.4 (https://tree.bio.ed.ac.uk/software/figtree/)中进行了注释和可视化。BLASTn分析显示,两个基因组与先前在南达科他州牛肺组织中检测到的新型星状病毒ON552247具有最高的核苷酸同源性(98.24%和98.54%)。第三个基因组与先前从患有呼吸道疾病的小牛中鉴定出的KP264970核苷酸同源性为95.74%,与ON552247核苷酸同源性为92.19%。这些序列与之前在19种乳突病毒中发现的其他星形病毒都不匹配。据我们所知,这些标本是墨西哥牛中报道的首个BoAstV基因组序列,也是迄今为止该地区唯一的呼吸BoAstV基因组数据。与呼吸道BoAstV毒株ON552247(21-24401)和KP264970 (BSRI-1)的高核苷酸同源性一致,我们的三个基因组聚集在呼吸道相关牛星状病毒谱系中(图1),对应于Zhu等人定义的第2组(G2)。虽然星状病毒通常被认为是肠道病原体,但它们在牛呼吸道和神经系统疾病中的作用越来越被认识到。在墨西哥患有呼吸道疾病的牛的鼻拭子中检测到密切相关的BoAstV基因组,表明这一谱系可能与牛呼吸道疾病复合体有关。此外,目前全球只有少数呼吸道BoAstV基因组可用,这些呼吸道毒株似乎与经典的肠道星状病毒存在遗传差异。我们的研究结果强调了扩大基因组监测的必要性,以了解BoAstV的致病潜力和传播动态,以及它对牛健康和One health的更广泛影响。Judith U. Oguzie:概念化、调查、方法论、软件、形式分析、数据管理、验证、写作——原稿。
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引用次数: 0
Longitudinal SARS-CoV-2 Antibody Response in Healthcare Workers: Benefit of Prior Infection and Heterologous Boosting on Anti-Spike IgG Immunity 医护人员对SARS-CoV-2抗体的纵向反应:既往感染和异体增强对抗刺突IgG免疫的益处
IF 4.2 4区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-05 DOI: 10.1111/irv.70202
Els Van Nedervelde, Ellen Vancutsem, Deborah De Geyter, Diederik De Cock, Rhea Buttiens, Thessa Laeremans, Joeri L. Aerts, Sabine D. Allard

Background and Objectives

Different COVID-19 vaccine platforms elicit variable immune responses, influenced by prior infection and booster vaccination. We aimed to compare the humoral immune responses elicited by mRNA and adenoviral vector (Ad-vector) COVID-19 vaccines in hospital employees and to assess the possible impact of prior SARS-CoV-2 infection on these responses.

Methods

We performed a prospective observational cohort study by recruiting employees of the Universitair Ziekenhuis Brussel who were vaccinated with an mRNA or Ad-vector vaccine. We assessed anti-spike (S) IgG and neutralising capacity at 1, 6 and 12 months (post-mRNA booster). Anti-S and anti-NCP IgG were measured by chemiluminescent microparticle immunoassay, and neutralising capacity was assessed using Genscript's cPASS. Non-parametric group comparisons used the Mann–Whitney U test, complemented by multiple linear regression.

Results

Following RVR, mRNA-vaccinated individuals (n = 380) exhibited higher anti-S IgG titres and neutralising capacity compared to those who received Ad-vector vaccines (n = 200). After the booster, anti-spike IgG remained higher in mRNA-vaccinated individuals than in Ad-vector recipients (q < 0.001); Ad-vector vaccinated individuals showed superior neutralising capacity. Natural SARS-CoV-2 infection prior to vaccination had varying impact on anti-S IgG and neutralising capacity, depending on vaccination type and time points.

Conclusion

Our findings underscore that both vaccine platforms and prior infections shape the magnitude and quality of the humoral immune response, highlighting the importance of considering priming strategy, booster design and hybrid immunity when optimising COVID-19 vaccination schedules for durable protection.

背景与目的:不同的COVID-19疫苗平台引起不同的免疫反应,受既往感染和加强疫苗接种的影响。我们的目的是比较mRNA和腺病毒载体(Ad-vector) COVID-19疫苗在医院员工中引发的体液免疫反应,并评估先前感染SARS-CoV-2对这些反应的可能影响。方法:我们招募了布鲁塞尔Ziekenhuis大学接种mRNA或Ad-vector疫苗的员工,进行了一项前瞻性观察队列研究。我们在1、6和12个月时(mrna增强后)评估抗spike (S) IgG和中和能力。采用化学发光微粒免疫法检测抗s和抗新型冠状病毒IgG,采用Genscript的cPASS检测中和能力。非参数组比较采用Mann-Whitney U检验,辅以多元线性回归。结果:RVR后,与接受Ad-vector疫苗的个体(n = 200)相比,mrna疫苗接种个体(n = 380)表现出更高的抗s - IgG滴度和中和能力。结论:我们的研究结果强调,疫苗平台和既往感染都影响了体液免疫反应的大小和质量,强调了在优化COVID-19疫苗接种计划以获得持久保护时,考虑启动策略、增强剂设计和混合免疫的重要性。
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引用次数: 0
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Influenza and Other Respiratory Viruses
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