Pub Date : 2020-11-21DOI: 10.15212/ijafr-2020-0103
J. Finn, P. Moran
The inclusion of farm maps of habitat features is becoming an urgent requirement for assessments of farm-scale sustainability and for compliance or benchmarking with national and international sustainability certification and accreditation schemes. Traditional methods of habitat assessment rely strongly on field-based surveys, which are logistically demanding and relatively costly. We describe and investigate a process that relies on information technology to develop a scalable method that can be applied across multiple farms to reduce the significant logistical challenges and financial costs of traditional habitat surveys. A key impediment to the routine development of farm habitat maps is the lack of information on the type of habitats that occur on a land parcel. Within a pilot project comprising 187 farms, we developed and implemented a process for creating farm habitat reports and investigate the accuracy of visual interpretation of satellite imagery by an ecologist aiming to identify habitat types. We generated customised farm reports that included a colour-coded farm habitat map and habitat information (type, area, relative wildlife importance). Visual assessment of satellite imagery achieved an overall accuracy of 96% in its ability to discriminate between land parcels with habitats categorised by this study as being of either high or low nature conservation value. Assessment of satellite imagery achieved an overall accuracy of 90% in its ability to discriminate among Fossitt level II habitat classes, and an overall accuracy of 81% when using individual habitat classes (Fossitt level III). There was, however, considerable variation in the accuracy associated with individual habitat classes. We conclude that this methodology based on satellite imagery is sufficiently accurate to be used for the incorporation of farmland habitats into farm-scale sustainability assurance, but should, at most, use Fossitt level II habitat classes. We discuss future challenges and opportunities for the development of farm habitat maps and plans for their use in sustainability certification schemes.
{"title":"A pilot study of methodology for the development of farmland habitat reports for sustainability assessments","authors":"J. Finn, P. Moran","doi":"10.15212/ijafr-2020-0103","DOIUrl":"https://doi.org/10.15212/ijafr-2020-0103","url":null,"abstract":"\u0000The inclusion of farm maps of habitat features is becoming an urgent requirement for assessments of farm-scale sustainability and for compliance or benchmarking with national and international sustainability certification and accreditation schemes. Traditional methods of habitat assessment rely strongly on field-based surveys, which are logistically demanding and relatively costly. We describe and investigate a process that relies on information technology to develop a scalable method that can be applied across multiple farms to reduce the significant logistical challenges and financial costs of traditional habitat surveys. A key impediment to the routine development of farm habitat maps is the lack of information on the type of habitats that occur on a land parcel. Within a pilot project comprising 187 farms, we developed and implemented a process for creating farm habitat reports and investigate the accuracy of visual interpretation of satellite imagery by an ecologist aiming to identify habitat types. We generated customised farm reports that included a colour-coded farm habitat map and habitat information (type, area, relative wildlife importance). Visual assessment of satellite imagery achieved an overall accuracy of 96% in its ability to discriminate between land parcels with habitats categorised by this study as being of either high or low nature conservation value. Assessment of satellite imagery achieved an overall accuracy of 90% in its ability to discriminate among Fossitt level II habitat classes, and an overall accuracy of 81% when using individual habitat classes (Fossitt level III). There was, however, considerable variation in the accuracy associated with individual habitat classes. We conclude that this methodology based on satellite imagery is sufficiently accurate to be used for the incorporation of farmland habitats into farm-scale sustainability assurance, but should, at most, use Fossitt level II habitat classes. We discuss future challenges and opportunities for the development of farm habitat maps and plans for their use in sustainability certification schemes.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":"45 1","pages":""},"PeriodicalIF":1.5,"publicationDate":"2020-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67307366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-11-21DOI: 10.15212/ijafr-2020-0108
S. Vero, N. McDonald, G. McGrath, P. Mellander
A historic lack of continuous stream nutrient monitoring at the catchment scale limits understanding of the effects of snowstorms. The most significant snowstorm since 1985, nicknamed “the Beast from the East”, occurred in February–March 2018. High-frequency stream outlet monitoring in two close but hydrologically and agriculturally contrasting catchments (<1,200 ha) captured phosphorus (total and reactive), total oxygenated nitrogen (TON), temperature and discharge dynamics during and after the event. The grassland catchment consists of poorly drained gley soils and exhibits overland flow pathways, while the arable catchment consists of well-drained brown earths and is dominated by subsurface pathways. Nitrate (NO3-N) concentrations were initially elevated (3.50 and 7.89 mg/L for poorly drained grassland and well-drained arable catchments, respectively) before becoming diluted by meltwater. Total reactive phosphorus (TRP) displayed a distal (anti-clockwise) concentration-discharge hysteresis in the poorly drained grassland catchment suggesting low mobilisation from the soil. Conversely, the well-drained arable catchment displayed proximal (clockwise) hysteresis, indicative of the mobilisation from stream and bank sediment. These relatively infrequent snow events behave similarly to heavy rainfall as regards nutrient losses, albeit subject to a time-lag induced by the speed of snowmelt and the soil moisture deficit (SMD) prior to snowfall. Antecedent land management is crucial to mitigate risk. The current absence of records and analyses of catchment response, particularly nutrient dynamics, to atypical cold weather events in Ireland limits understanding of their effects on water quality. The present study provides the first such baseline information from which land management strategies and the implications for attaining environmental targets can be explored.
{"title":"The Beast from the East: impact of an atypical cold weather event on hydrology and nutrient dynamics in two Irish catchments","authors":"S. Vero, N. McDonald, G. McGrath, P. Mellander","doi":"10.15212/ijafr-2020-0108","DOIUrl":"https://doi.org/10.15212/ijafr-2020-0108","url":null,"abstract":"\u0000A historic lack of continuous stream nutrient monitoring at the catchment scale limits understanding of the effects of snowstorms. The most significant snowstorm since 1985, nicknamed “the Beast from the East”, occurred in February–March 2018. High-frequency stream outlet monitoring in two close but hydrologically and agriculturally contrasting catchments (<1,200 ha) captured phosphorus (total and reactive), total oxygenated nitrogen (TON), temperature and discharge dynamics during and after the event. The grassland catchment consists of poorly drained gley soils and exhibits overland flow pathways, while the arable catchment consists of well-drained brown earths and is dominated by subsurface pathways. Nitrate (NO3-N) concentrations were initially elevated (3.50 and 7.89 mg/L for poorly drained grassland and well-drained arable catchments, respectively) before becoming diluted by meltwater. Total reactive phosphorus (TRP) displayed a distal (anti-clockwise) concentration-discharge hysteresis in the poorly drained grassland catchment suggesting low mobilisation from the soil. Conversely, the well-drained arable catchment displayed proximal (clockwise) hysteresis, indicative of the mobilisation from stream and bank sediment. These relatively infrequent snow events behave similarly to heavy rainfall as regards nutrient losses, albeit subject to a time-lag induced by the speed of snowmelt and the soil moisture deficit (SMD) prior to snowfall. Antecedent land management is crucial to mitigate risk. The current absence of records and analyses of catchment response, particularly nutrient dynamics, to atypical cold weather events in Ireland limits understanding of their effects on water quality. The present study provides the first such baseline information from which land management strategies and the implications for attaining environmental targets can be explored.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":" ","pages":""},"PeriodicalIF":1.5,"publicationDate":"2020-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44211438","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-11-21DOI: 10.15212/ijafr-2020-0105
M. Wronkowska, A. Jarmułowicz, G. Lamparski, T. Jeliński, C. Haros
The technological and sensory properties and the staling of breads made from oat flour (OF) and buckwheat flour (BF) were analysed. Significant differences in protein and ash content were found in the experimental breads due to significant differences in the composition of the BF and OF used. As the proportion of BF in the recipe increased, a deterioration in the technological properties of the dough and bread as well as an increase in the crumb hardness were observed. The presence of OF in the recipe increased the bread volume, significantly enhanced the lightness of the crust and crumb and improved the overall sensory quality. The OF used in the recipe decreased the starch retrogradation enthalpy value, which is strongly related to a delay in bread staling. The proposed bakery products can be attractive to consumers who are looking for new food products.
{"title":"Oat–buckwheat breads – technological quality, staling and sensory properties","authors":"M. Wronkowska, A. Jarmułowicz, G. Lamparski, T. Jeliński, C. Haros","doi":"10.15212/ijafr-2020-0105","DOIUrl":"https://doi.org/10.15212/ijafr-2020-0105","url":null,"abstract":"\u0000The technological and sensory properties and the staling of breads made from oat flour (OF) and buckwheat flour (BF) were analysed. Significant differences in protein and ash content were found in the experimental breads due to significant differences in the composition of the BF and OF used. As the proportion of BF in the recipe increased, a deterioration in the technological properties of the dough and bread as well as an increase in the crumb hardness were observed. The presence of OF in the recipe increased the bread volume, significantly enhanced the lightness of the crust and crumb and improved the overall sensory quality. The OF used in the recipe decreased the starch retrogradation enthalpy value, which is strongly related to a delay in bread staling. The proposed bakery products can be attractive to consumers who are looking for new food products.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":" ","pages":""},"PeriodicalIF":1.5,"publicationDate":"2020-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43967099","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Kodinova, M. Dushkova, M. Miteva-Petrova, V. Yanakieva, S. Petrov, Z. Denkova
Abstract Ultrafiltration of skim cow’s milk with a UF10-PAN membrane at volume reduction ratios (VRRs) of 2 and 3 was performed. The ultrafiltration retentates obtained were used for production of probiotic yoghurts with three different starters. A control sample was prepared using skim cow’s milk. All yoghurts were analysed according to the following parameters: titratable acidity, dry matter, organoleptic characteristics, number of specific microorganisms (Lactobacillus bulgaricus and Streptococcus thermophilus) and the total count of viable lactic acid bacteria for 28 d of storage. The results showed that the increase in the VRR during ultrafiltration increased the titratable acidity, as well as the dry matter of all yoghurts. Ultrafiltration concentration led to an increase in the count of viable lactic acid bacteria in all yoghurts which improved their functional properties. The highest values of the total number of viable lactic acid bacteria were determined in yoghurts obtained with starter 1CM, followed by starters MZ2 and ZD for both VRRs. Probiotic yoghurts with the highest organoleptic evaluation were obtained from ultrafiltration retentates at VRR = 2 and starters 1CM and MZ2.
{"title":"Production of probiotic Bulgarian yoghurts obtained from an ultrafiltered cow’s milk","authors":"S. Kodinova, M. Dushkova, M. Miteva-Petrova, V. Yanakieva, S. Petrov, Z. Denkova","doi":"10.2478/ijafr-2020-0001","DOIUrl":"https://doi.org/10.2478/ijafr-2020-0001","url":null,"abstract":"Abstract Ultrafiltration of skim cow’s milk with a UF10-PAN membrane at volume reduction ratios (VRRs) of 2 and 3 was performed. The ultrafiltration retentates obtained were used for production of probiotic yoghurts with three different starters. A control sample was prepared using skim cow’s milk. All yoghurts were analysed according to the following parameters: titratable acidity, dry matter, organoleptic characteristics, number of specific microorganisms (Lactobacillus bulgaricus and Streptococcus thermophilus) and the total count of viable lactic acid bacteria for 28 d of storage. The results showed that the increase in the VRR during ultrafiltration increased the titratable acidity, as well as the dry matter of all yoghurts. Ultrafiltration concentration led to an increase in the count of viable lactic acid bacteria in all yoghurts which improved their functional properties. The highest values of the total number of viable lactic acid bacteria were determined in yoghurts obtained with starter 1CM, followed by starters MZ2 and ZD for both VRRs. Probiotic yoghurts with the highest organoleptic evaluation were obtained from ultrafiltration retentates at VRR = 2 and starters 1CM and MZ2.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":"59 1","pages":"1 - 11"},"PeriodicalIF":1.5,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46385526","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
T. Moloney, H. Sheridan, J. Grant, E. O'riordan, P. O'kiely
Abstract Binary- and multi-species sown mixtures may increase herbage yield and/or reduce inorganic nitrogen (N) requirement compared to perennial ryegrass (PRG) (Lolium perenne L.) swards. A split-plot design was used to compare yields of binary- and multi-species mixtures to single-species swards of three grasses and red clover managed for intensive silage production under varying N application rates. Perennial and Italian (Lolium multiflorum Lam.) ryegrasses had greater annual yields when grown as single species receiving 360 kg N/ha per year than in binary mixtures with red clover (Trifolium pratense L.) receiving 0 kg N/ha per year, whereas timothy (Phleum pratense L.) produced equally high yields in both situations. When no inorganic N was applied, the annual dry matter yield of Mix 1 (10,738 kg/ha; PRG, timothy, red clover and white clover (Trifolium repens L.) and Mix 2 (11,679 kg/ha; PRG, timothy, red clover, ribwort plantain (Plantago lanceolata L.) and chicory (Cichorium intybus L.)) was greater than that of a PRG sward (PRG/0N; 5,885 kg/ha) and derived more from the contribution of legumes than herbs. This yield advantage of mixtures declined as inorganic N input increased, as did the legume and herb proportions in the multi-species swards. When averaged across rates of inorganic N input, Mix 2 had a greater annual yield than Mix 1 (12,464 vs. 11,893 kg/ha). Mix 2 receiving no inorganic fertiliser N and both Mix 1 and Mix 2 receiving 120 kg N/ha per year matched the annual yield achieved by PRG receiving 360 kg N/ha per year. Our results indicate that the yield performance of binary- and multi-species grassland swards should be measured in situ rather than predicted from single-species swards of constituent species.
摘要与多年生黑麦草（Lolium perenne L.）相比，二元和多物种混合播种可以提高牧草产量和/或降低无机氮需求。采用裂区设计，将二元和多物种混合物与三种草和红三叶草的单一物种草地在不同施氮率下进行集约青贮生产的产量进行比较。多年生和意大利（Lolium multiflorum Lam.）黑麦草作为单一品种种植时，年产量为360 kg N/ha，高于红三叶草（Trifolium pratense L.）年产量为0 kg N/ha的二元混合物，而噻莫西（Phleum pratense L..）在这两种情况下产量同样高。当不施用无机氮时，混合物1（10738公斤/公顷；PRG、timothy、红三叶草和白三叶草（Trifolium repens L.））和混合物2（11679公斤/公顷，PRG、timothy、红三叶草、车前草（Plantago lanceolata L.）和菊苣（Cichorium intybus L.））的年干物质产量大于PRG草地（PRG/0N；5885公斤/公顷），并且更多地来自豆类而非草本植物的贡献。混合物的这种产量优势随着无机氮输入的增加而下降，多物种草地中豆类和草本植物的比例也在增加。当无机氮输入速率平均时，混合2的年产量高于混合1（12464对11893公斤/公顷）。混合料2不施用无机肥料N，混合料1和混合料2每年施用120 kg N/ha，与PRG每年施用360 kg N/ha的年产量相匹配。我们的结果表明，二元和多物种草地的产量表现应该在原位测量，而不是从组成物种的单一物种草地预测。
{"title":"Yield of binary- and multi-species swards relative to single-species swards in intensive silage systems","authors":"T. Moloney, H. Sheridan, J. Grant, E. O'riordan, P. O'kiely","doi":"10.2478/ijafr-2020-0002","DOIUrl":"https://doi.org/10.2478/ijafr-2020-0002","url":null,"abstract":"Abstract Binary- and multi-species sown mixtures may increase herbage yield and/or reduce inorganic nitrogen (N) requirement compared to perennial ryegrass (PRG) (Lolium perenne L.) swards. A split-plot design was used to compare yields of binary- and multi-species mixtures to single-species swards of three grasses and red clover managed for intensive silage production under varying N application rates. Perennial and Italian (Lolium multiflorum Lam.) ryegrasses had greater annual yields when grown as single species receiving 360 kg N/ha per year than in binary mixtures with red clover (Trifolium pratense L.) receiving 0 kg N/ha per year, whereas timothy (Phleum pratense L.) produced equally high yields in both situations. When no inorganic N was applied, the annual dry matter yield of Mix 1 (10,738 kg/ha; PRG, timothy, red clover and white clover (Trifolium repens L.) and Mix 2 (11,679 kg/ha; PRG, timothy, red clover, ribwort plantain (Plantago lanceolata L.) and chicory (Cichorium intybus L.)) was greater than that of a PRG sward (PRG/0N; 5,885 kg/ha) and derived more from the contribution of legumes than herbs. This yield advantage of mixtures declined as inorganic N input increased, as did the legume and herb proportions in the multi-species swards. When averaged across rates of inorganic N input, Mix 2 had a greater annual yield than Mix 1 (12,464 vs. 11,893 kg/ha). Mix 2 receiving no inorganic fertiliser N and both Mix 1 and Mix 2 receiving 120 kg N/ha per year matched the annual yield achieved by PRG receiving 360 kg N/ha per year. Our results indicate that the yield performance of binary- and multi-species grassland swards should be measured in situ rather than predicted from single-species swards of constituent species.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":"59 1","pages":"12 - 26"},"PeriodicalIF":1.5,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48627270","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. McGee, M. Keane, R. Neilan, P. Caffrey, A. Moloney
Abstract The increased use of Holstein genetic material in the Irish dairy herd has consequences for beef production. In all, 42 spring-born steers [14 Holsteins (HO), 14 Friesian (FR) and 14 Charolais × Holstein-Friesian (CH)] were reared to slaughter at between 26 and 37 mo of age. Carcass weight was higher and the lipid concentration of m. longissimus thoracis et lumborum was lower (P < 0.05) for CH than the dairy breeds. Overall acceptability tended to be lower (P = 0.055) while tenderness, texture and chewiness were lower (P < 0.05) for CH compared with the dairy breeds. The proportion of C16:1 in the total lipid tended to be lower (P = 0.055) for CH than the dairy breeds. Replacing male offspring of traditional “Irish” Friesian bulls with offspring from a genetically superior (from a dairy perspective) strain of Holstein bull had no commercially important impact on beef nutritional or eating quality.
{"title":"Meat quality characteristics of high dairy genetic-merit Holstein, standard dairy genetic-merit Friesian and Charolais x Holstein-Friesian steers","authors":"M. McGee, M. Keane, R. Neilan, P. Caffrey, A. Moloney","doi":"10.2478/ijafr-2020-0003","DOIUrl":"https://doi.org/10.2478/ijafr-2020-0003","url":null,"abstract":"Abstract The increased use of Holstein genetic material in the Irish dairy herd has consequences for beef production. In all, 42 spring-born steers [14 Holsteins (HO), 14 Friesian (FR) and 14 Charolais × Holstein-Friesian (CH)] were reared to slaughter at between 26 and 37 mo of age. Carcass weight was higher and the lipid concentration of m. longissimus thoracis et lumborum was lower (P < 0.05) for CH than the dairy breeds. Overall acceptability tended to be lower (P = 0.055) while tenderness, texture and chewiness were lower (P < 0.05) for CH compared with the dairy breeds. The proportion of C16:1 in the total lipid tended to be lower (P = 0.055) for CH than the dairy breeds. Replacing male offspring of traditional “Irish” Friesian bulls with offspring from a genetically superior (from a dairy perspective) strain of Holstein bull had no commercially important impact on beef nutritional or eating quality.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":"59 1","pages":"27 - 32"},"PeriodicalIF":1.5,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47667414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
L. Walsh, M. Gaffney, G. Malloch, S. Foster, M. Williamson, R. Mangan, G. Purvis
Abstract The grain aphid Sitobion avenae is a prolific pest of cereal crops worldwide, controlled effectively with pyrethroid insecticides. However, the classic knock down resistance (kdr) mutation, L1014F on the S. avenae sodium channel gene, has been identified as the cause of the recently observed heterozygous (kdr-SR) resistance in the SA3 grain aphid super-clone. Results indicate that the kdr-SR SA3 clone can survive pyrethroid exposure above twice the normal field rate, continuing to reproduce thereafter. Additionally, the SA3 clone was found to be capable of producing sexual oviparous morphs, able to lay eggs following pyrethroid exposure. This demonstrates that possession of the L1014F mutation does not preclude the capacity to produce sexual morphs. This makes the adoption of an effective resistance management strategy imperative, within a wider integrated pest management (IPM) approach to control grain aphid.
{"title":"First evidence of retained sexual capacity and survival in the pyrethroid resistant Sitobion avenae (F.) (Hemiptera: Aphididae) SA3 super-clone following exposure to a pyrethroid at current field-rate","authors":"L. Walsh, M. Gaffney, G. Malloch, S. Foster, M. Williamson, R. Mangan, G. Purvis","doi":"10.2478/ijafr-2019-0003","DOIUrl":"https://doi.org/10.2478/ijafr-2019-0003","url":null,"abstract":"Abstract The grain aphid Sitobion avenae is a prolific pest of cereal crops worldwide, controlled effectively with pyrethroid insecticides. However, the classic knock down resistance (kdr) mutation, L1014F on the S. avenae sodium channel gene, has been identified as the cause of the recently observed heterozygous (kdr-SR) resistance in the SA3 grain aphid super-clone. Results indicate that the kdr-SR SA3 clone can survive pyrethroid exposure above twice the normal field rate, continuing to reproduce thereafter. Additionally, the SA3 clone was found to be capable of producing sexual oviparous morphs, able to lay eggs following pyrethroid exposure. This demonstrates that possession of the L1014F mutation does not preclude the capacity to produce sexual morphs. This makes the adoption of an effective resistance management strategy imperative, within a wider integrated pest management (IPM) approach to control grain aphid.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":"58 1","pages":"21 - 26"},"PeriodicalIF":1.5,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"69212085","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
D. Berry, N. McHugh, E. Wall, K. McDermott, A. O'Brien
Abstract The generally low usage of artificial insemination and single-sire mating in sheep, compounded by mob lambing (and lambing outdoors), implies that parentage assignment in sheep is challenging. The objective here was to develop a low-density panel of single nucleotide polymorphisms (SNPs) for accurate parentage verification and discovery in sheep. Of particular interest was where SNP selection was limited to only a subset of chromosomes, thereby eliminating the ability to accurately impute genome-wide denser marker panels. Data used consisted of 10,933 candidate SNPs on 9,390 purebred sheep. These data consisted of 1,876 validated genotyped sire–offspring pairs and 2,784 validated genotyped dam–offspring pairs. The SNP panels developed consisted of 87 SNPs to 500 SNPs. Parentage verification and discovery were undertaken using 1) exclusion, based on the sharing of at least one allele between candidate parent–offspring pairs, and 2) a likelihood-based approach. Based on exclusion, allowing for one discordant offspring–parent genotype, a minimum of 350 SNPs was required when the goal was to unambiguously identify the true sire or dam from all possible candidates. Results suggest that, if selecting SNPs across the entire genome, a minimum of 250 carefully selected SNPs are required to ensure that the most likely selected parent (based on the likelihood approach) was, in fact, the true parent. If restricting the SNPs to just a subset of chromosomes, the recommendation is to use at least a 300-SNP panel from at least six chromosomes, with approximately an equal number of SNPs per chromosome.
{"title":"Low-density genotype panel for both parentage verification and discovery in a multi-breed sheep population","authors":"D. Berry, N. McHugh, E. Wall, K. McDermott, A. O'Brien","doi":"10.2478/ijafr-2019-0001","DOIUrl":"https://doi.org/10.2478/ijafr-2019-0001","url":null,"abstract":"Abstract The generally low usage of artificial insemination and single-sire mating in sheep, compounded by mob lambing (and lambing outdoors), implies that parentage assignment in sheep is challenging. The objective here was to develop a low-density panel of single nucleotide polymorphisms (SNPs) for accurate parentage verification and discovery in sheep. Of particular interest was where SNP selection was limited to only a subset of chromosomes, thereby eliminating the ability to accurately impute genome-wide denser marker panels. Data used consisted of 10,933 candidate SNPs on 9,390 purebred sheep. These data consisted of 1,876 validated genotyped sire–offspring pairs and 2,784 validated genotyped dam–offspring pairs. The SNP panels developed consisted of 87 SNPs to 500 SNPs. Parentage verification and discovery were undertaken using 1) exclusion, based on the sharing of at least one allele between candidate parent–offspring pairs, and 2) a likelihood-based approach. Based on exclusion, allowing for one discordant offspring–parent genotype, a minimum of 350 SNPs was required when the goal was to unambiguously identify the true sire or dam from all possible candidates. Results suggest that, if selecting SNPs across the entire genome, a minimum of 250 carefully selected SNPs are required to ensure that the most likely selected parent (based on the likelihood approach) was, in fact, the true parent. If restricting the SNPs to just a subset of chromosomes, the recommendation is to use at least a 300-SNP panel from at least six chromosomes, with approximately an equal number of SNPs per chromosome.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":"58 1","pages":"1 - 12"},"PeriodicalIF":1.5,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2478/ijafr-2019-0001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41529208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
C. Fogarty, Conor Smyth, P. Whyte, N. Brunton, D. Bolton
Abstract To estimate the shelf life of fresh fish, the processor must know the period of time between catch/harvest and arrival at the processing plant. This information is not always available, necessitating the provision of methods to estimate the time since catch or harvest. The objectives of this study were therefore to develop and/or validate sensory and ATP derivative-based methods for rapidly assessing the freshness of fish. A quality index method (QIM; raw fish) and a quantitative descriptive analysis (QDA; cooked fish) were developed and validated (against bacterial count [total viable count (TVC)] and time) for salmon (Salmo salar) and cod (Gadus morhua). The production of inosine monophosphate (IMP), inosine and hypoxanthine (Hx) and associated ratios (IMP/Hx, K1-value or H-value) were also investigated for use as freshness markers. There was a linear relationship between QIM and TVC (R2 = 0.93 for salmon and R2 = 0.89 for cod), QIM and time (R2 = 0.96 for salmon and R2 = 0.98 for cod), QDA and TVC (R2 = 0.93 for salmon and R2 = 0.77 for cod) and QDA and time (R2 = 0.94 for salmon and R2 = 0.87 for cod), suggesting that the QIM and QDA schemes developed could be used to monitor/assess freshness. The H-value also increased linearly with TVC (R2 = 0.88 for salmon and R2 = 0.89 for cod) and time (R2 = 0.93 for salmon and R2 = 0.84 for cod). It was therefore concluded that both the QIM/QDA approach and monitoring ATP degradation, specifically expressed as the H-value, could be used as rapid methods to assess the freshness of salmon and cod arriving at the processing plant.
{"title":"Sensory and ATP derivative-based indicators for assessing the freshness of Atlantic salmon (Salmo salar) and cod (Gadus morhua)","authors":"C. Fogarty, Conor Smyth, P. Whyte, N. Brunton, D. Bolton","doi":"10.2478/ijafr-2019-0008","DOIUrl":"https://doi.org/10.2478/ijafr-2019-0008","url":null,"abstract":"Abstract To estimate the shelf life of fresh fish, the processor must know the period of time between catch/harvest and arrival at the processing plant. This information is not always available, necessitating the provision of methods to estimate the time since catch or harvest. The objectives of this study were therefore to develop and/or validate sensory and ATP derivative-based methods for rapidly assessing the freshness of fish. A quality index method (QIM; raw fish) and a quantitative descriptive analysis (QDA; cooked fish) were developed and validated (against bacterial count [total viable count (TVC)] and time) for salmon (Salmo salar) and cod (Gadus morhua). The production of inosine monophosphate (IMP), inosine and hypoxanthine (Hx) and associated ratios (IMP/Hx, K1-value or H-value) were also investigated for use as freshness markers. There was a linear relationship between QIM and TVC (R2 = 0.93 for salmon and R2 = 0.89 for cod), QIM and time (R2 = 0.96 for salmon and R2 = 0.98 for cod), QDA and TVC (R2 = 0.93 for salmon and R2 = 0.77 for cod) and QDA and time (R2 = 0.94 for salmon and R2 = 0.87 for cod), suggesting that the QIM and QDA schemes developed could be used to monitor/assess freshness. The H-value also increased linearly with TVC (R2 = 0.88 for salmon and R2 = 0.89 for cod) and time (R2 = 0.93 for salmon and R2 = 0.84 for cod). It was therefore concluded that both the QIM/QDA approach and monitoring ATP degradation, specifically expressed as the H-value, could be used as rapid methods to assess the freshness of salmon and cod arriving at the processing plant.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":"58 1","pages":"71 - 80"},"PeriodicalIF":1.5,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43386868","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
D. Madden, D. Madden, Simon Harrison, John A. Finn, D. Huallacháin
Abstract Measures that prevent cattle access to watercourses are commonly implemented through agri-environment schemes, in an effort to address the objectives of the Water Framework Directive. Despite the widespread implementation, few studies have assessed the impact of cattle access to streams on aquatic macroinvertebrates. This study assessed the local-scale impact of cattle drinking points on water quality parameters (i.e. macroinvertebrate and water chemistry metrics) on 39 intensively-managed grassland farms in the south-east of Ireland. The results indicate that sites that were more than or equal to good quality upstream of cattle drinking points, were more susceptible to cattle access impacts than sites where upstream water quality was less than good. The European Court of Auditors (2011) recommended that there should be a higher rate of EU contribution for measures with higher environmental potential, in this instance, for cattle exclusion measures targeted to sites where background quality is more than or equal to good. Appropriate efforts should thus be made to incentivise farmers in good to high status sites to adopt cattle exclusion measures.
{"title":"The impact of cattle drinking points on aquatic macroinvertebrates in streams in south-east Ireland","authors":"D. Madden, D. Madden, Simon Harrison, John A. Finn, D. Huallacháin","doi":"10.2478/ijafr-2019-0002","DOIUrl":"https://doi.org/10.2478/ijafr-2019-0002","url":null,"abstract":"Abstract Measures that prevent cattle access to watercourses are commonly implemented through agri-environment schemes, in an effort to address the objectives of the Water Framework Directive. Despite the widespread implementation, few studies have assessed the impact of cattle access to streams on aquatic macroinvertebrates. This study assessed the local-scale impact of cattle drinking points on water quality parameters (i.e. macroinvertebrate and water chemistry metrics) on 39 intensively-managed grassland farms in the south-east of Ireland. The results indicate that sites that were more than or equal to good quality upstream of cattle drinking points, were more susceptible to cattle access impacts than sites where upstream water quality was less than good. The European Court of Auditors (2011) recommended that there should be a higher rate of EU contribution for measures with higher environmental potential, in this instance, for cattle exclusion measures targeted to sites where background quality is more than or equal to good. Appropriate efforts should thus be made to incentivise farmers in good to high status sites to adopt cattle exclusion measures.","PeriodicalId":14659,"journal":{"name":"Irish Journal of Agricultural and Food Research","volume":"58 1","pages":"13 - 20"},"PeriodicalIF":1.5,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46615884","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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