首页 > 最新文献

Journal of Applied Crystallography最新文献

英文 中文
Efficient detection of deformation-induced microstructural modifications in polycrystalline micropillars using scanning X-ray nanodiffraction. 利用扫描x射线纳米衍射有效检测多晶微柱中变形引起的微观结构变化。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2026-02-01 DOI: 10.1107/S160057672500946X
Anton Davydok, Kritika Singh, Surya Snata Rout, Christina Krywka

Microstructural characterization of polycrystalline micropillars remains a significant challenge, particularly under time constraints such as those encountered during in situ or other time-sensitive experimental conditions, where appropriate data checks might assist in taking the right decision and have influence on the outcome of the experiment. In this study, we present a fast and efficient method for estimating local structural properties using scanning X-ray nanodiffraction-a technique widely employed in various dynamic and static micro- and nanoscale material investigations. The analysis targets the strongest diffraction peaks within the scattering pattern to extract essential information on grain orientation, size and lattice strain, while excluding weaker signals to streamline processing. As a case study, a γ-TiAl-based micropillar (Ti-46.5Al-5Nb), fabricated via Xe+ plasma focused-ion-beam milling, was analyzed before and after 10% uniaxial compression. The micropillar's grain size significantly exceeded the X-ray beam size (∼300 nm2), and its known crystallographic orientation enabled accurate tracking of structural evolution. A direct point-to-point comparison between the undeformed and compressed states revealed localized microstructural changes associated with plastic deformation. This approach provides a rapid and reliable means of assessing microstructural evolution and demonstrates high potential for in situ and operando investigations of small-scale materials.

多晶微柱的微观结构表征仍然是一个重大挑战,特别是在时间限制的情况下,例如在现场或其他时间敏感的实验条件下遇到的情况,适当的数据检查可能有助于做出正确的决定,并对实验结果产生影响。在这项研究中,我们提出了一种快速有效的方法来估计局部结构性质的扫描x射线纳米衍射-一种广泛应用于各种动态和静态微纳米尺度材料研究的技术。分析以散射图中最强的衍射峰为目标,提取晶粒取向、尺寸和晶格应变的基本信息,同时排除较弱的信号,简化处理。以Xe+等离子体聚焦离子束铣削制备的γ- tial基微柱(Ti-46.5Al-5Nb)为例,分析了10%单轴压缩前后的影响。微柱的晶粒尺寸明显超过x射线束尺寸(~ 300 nm2),其已知的晶体取向可以精确跟踪结构演变。未变形和压缩状态之间的直接点对点比较揭示了与塑性变形相关的局部微观结构变化。这种方法提供了一种快速而可靠的方法来评估微观结构的演变,并证明了小尺寸材料的原位和操作研究的巨大潜力。
{"title":"Efficient detection of deformation-induced microstructural modifications in polycrystalline micropillars using scanning X-ray nanodiffraction.","authors":"Anton Davydok, Kritika Singh, Surya Snata Rout, Christina Krywka","doi":"10.1107/S160057672500946X","DOIUrl":"10.1107/S160057672500946X","url":null,"abstract":"<p><p>Microstructural characterization of polycrystalline micropillars remains a significant challenge, particularly under time constraints such as those encountered during <i>in situ</i> or other time-sensitive experimental conditions, where appropriate data checks might assist in taking the right decision and have influence on the outcome of the experiment. In this study, we present a fast and efficient method for estimating local structural properties using scanning X-ray nanodiffraction-a technique widely employed in various dynamic and static micro- and nanoscale material investigations. The analysis targets the strongest diffraction peaks within the scattering pattern to extract essential information on grain orientation, size and lattice strain, while excluding weaker signals to streamline processing. As a case study, a γ-TiAl-based micropillar (Ti-46.5Al-5Nb), fabricated via Xe<sup>+</sup> plasma focused-ion-beam milling, was analyzed before and after 10% uniaxial compression. The micropillar's grain size significantly exceeded the X-ray beam size (∼300 nm<sup>2</sup>), and its known crystallographic orientation enabled accurate tracking of structural evolution. A direct point-to-point comparison between the undeformed and compressed states revealed localized microstructural changes associated with plastic deformation. This approach provides a rapid and reliable means of assessing microstructural evolution and demonstrates high potential for <i>in situ</i> and <i>operando</i> investigations of small-scale materials.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"59 Pt 1","pages":"85-92"},"PeriodicalIF":2.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12871479/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146125101","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Describing neutron spin echo data from undulating lipid vesicles: recent advances. 描述波动脂质囊泡的中子自旋回波数据:最新进展。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2026-02-01 DOI: 10.1107/S1600576725011343
Ingo Hoffmann, Elizabeth G Kelley, Michihiro Nagao, Petia Vlahovska, Rony Granek

For almost 30 years, the Zilman-Granek stretched exponential [Zilman & Granek (1996). Phys. Rev. Lett. 77, 4788-4791] has been used to obtain bending rigidities of membranes in lipid and surfactant vesicles from neutron spin echo data. However, with the advent of improved spectrometers that can easily measure Fourier times up to some 100 ns and even 1 µs, more subtle effects become visible in the data, which requires a refined theory. Recently, we published a framework for analysing such neutron spin echo data [Granek et al. (2024). Eur. Phys. J. E 47, 12]. Here, we apply this framework to different model membranes. The purpose of this paper is twofold. We intend to elucidate some often overlooked parameters, such as vesicle diffusion, size, lamellarity and membrane tension, that limit the quantitative interpretation of bending modulus values from NSE data. We also present some future opportunities to better understand the membrane dynamics and major sources of dissipation at the nanoscale uniquely probed with NSE.

近30年来,Zilman-Granek拉伸指数[Zilman & Granek(1996)]。理论物理。利用中子自旋回波数据获得脂质和表面活性剂囊泡中膜的弯曲刚度。然而,随着改进的光谱仪的出现,可以很容易地测量到大约100 ns甚至1µs的傅里叶时间,在数据中可以看到更微妙的影响,这需要一个完善的理论。最近,我们发表了一个分析这种中子自旋回波数据的框架[Granek et al.(2024)]。欧元。理论物理。[j]。在这里,我们将这个框架应用于不同的模型膜。本文的目的是双重的。我们打算阐明一些经常被忽视的参数,如囊泡扩散、大小、层状和膜张力,这些参数限制了从NSE数据中定量解释弯曲模量值。我们还提出了一些未来的机会,以更好地了解膜动力学和主要耗散源在纳米尺度上独特的NSE探测。
{"title":"Describing neutron spin echo data from undulating lipid vesicles: recent advances.","authors":"Ingo Hoffmann, Elizabeth G Kelley, Michihiro Nagao, Petia Vlahovska, Rony Granek","doi":"10.1107/S1600576725011343","DOIUrl":"10.1107/S1600576725011343","url":null,"abstract":"<p><p>For almost 30 years, the Zilman-Granek stretched exponential [Zilman & Granek (1996). <i>Phys. Rev. Lett.</i> <b>77</b>, 4788-4791] has been used to obtain bending rigidities of membranes in lipid and surfactant vesicles from neutron spin echo data. However, with the advent of improved spectrometers that can easily measure Fourier times up to some 100 ns and even 1 µs, more subtle effects become visible in the data, which requires a refined theory. Recently, we published a framework for analysing such neutron spin echo data [Granek <i>et al.</i> (2024). <i>Eur. Phys. J. E</i> <b>47</b>, 12]. Here, we apply this framework to different model membranes. The purpose of this paper is twofold. We intend to elucidate some often overlooked parameters, such as vesicle diffusion, size, lamellarity and membrane tension, that limit the quantitative interpretation of bending modulus values from NSE data. We also present some future opportunities to better understand the membrane dynamics and major sources of dissipation at the nanoscale uniquely probed with NSE.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"59 Pt 1","pages":"152-162"},"PeriodicalIF":2.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12871483/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146125081","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Common misconceptions in crystallography and crystal optics. 晶体学和晶体光学中的常见误解。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2026-02-01 DOI: 10.1107/S1600576725010635
Lluís Casas

Did you know that an X-ray diffraction pattern is not a spectrum? However, one in five scientific papers showing X-ray diffraction patterns refers to them as 'X-ray spectra'. Further, and in contrast to what is stated in many reference books, a triclinic substance could have a cubic-shaped cell. In crystal optics the terminology 'parallel Nicols' is almost always misused, and in the frame of polarizing microscope observations zoning is sometimes mistaken for twinning. In this paper, six recurring misconceptions in crystallography, including several related to mineral and crystal optics, are analyzed. Their prevalence is assessed through statistical data on their persistent appearances in peer-reviewed scientific literature. The objective of this study is to promote the correction of these misconceptions in academic communication and teaching. Furthermore, and according to some learning theories, the explanation of well established misconceptions could be used by teachers as an educational resource, offering powerful learning opportunities and contributing to talent development.

你知道x射线衍射图不是光谱吗?然而,五分之一显示x射线衍射图样的科学论文将其称为“x射线光谱”。此外,与许多参考书中所述的相反,三斜物质可能具有立方形状的细胞。在晶体光学中,“平行尼科尔斯”这个术语几乎总是被误用,在偏光显微镜观察的框架中,分带有时被误认为是孪生。本文分析了晶体学中常见的六个误解,包括与矿物光学和晶体光学有关的误解。通过统计数据来评估它们在同行评审的科学文献中持续出现的情况。本研究的目的是促进这些误解在学术交流和教学中的纠正。此外,根据一些学习理论,对既定误解的解释可以被教师用作一种教育资源,提供强大的学习机会,有助于人才发展。
{"title":"Common misconceptions in crystallography and crystal optics.","authors":"Lluís Casas","doi":"10.1107/S1600576725010635","DOIUrl":"10.1107/S1600576725010635","url":null,"abstract":"<p><p>Did you know that an X-ray diffraction pattern is not a spectrum? However, one in five scientific papers showing X-ray diffraction patterns refers to them as 'X-ray spectra'. Further, and in contrast to what is stated in many reference books, a triclinic substance could have a cubic-shaped cell. In crystal optics the terminology 'parallel Nicols' is almost always misused, and in the frame of polarizing microscope observations zoning is sometimes mistaken for twinning. In this paper, six recurring misconceptions in crystallography, including several related to mineral and crystal optics, are analyzed. Their prevalence is assessed through statistical data on their persistent appearances in peer-reviewed scientific literature. The objective of this study is to promote the correction of these misconceptions in academic communication and teaching. Furthermore, and according to some learning theories, the explanation of well established misconceptions could be used by teachers as an educational resource, offering powerful learning opportunities and contributing to talent development.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"59 Pt 1","pages":"239-247"},"PeriodicalIF":2.8,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12871485/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146125141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Anomalous X-ray diffraction on hybrid perovskite thin films: results and challenges. 杂化钙钛矿薄膜的异常x射线衍射:结果和挑战。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-11-28 eCollection Date: 2025-12-01 DOI: 10.1107/S1600576725009951
Lena Merten, Paul Zimmermann, Niels Scheffczyk, Ekaterina Kneschaurek, Valentin Munteanu, Alina Weiss, Azat Khadiev, Alexander Hinderhofer, Frank Schreiber

Anomalous X-ray diffraction has been applied for structure determination in both biological and inorganic systems. The ability to create elemental contrast by varying the X-ray energy around the absorption edge of a specific element makes it a viable tool to probe and locate specific elements within a crystal structure, providing valuable complementary information to standard X-ray diffraction. Considering the large amount of research on hybrid organic-inorganic perovskites for photovoltaic applications, it is surprising that anomalous diffraction experiments on these materials are rather under-explored. In recent years, hybrid lead halide perovskite materials have evolved as a promising material class for next-generation photovoltaic devices, as well as further applications. X-ray diffraction methods, including grazing-incidence and in situ techniques, are routinely implemented for structural investigations. This work presents anomalous diffraction studies on each component of hybrid metal halide perovskites, i.e. metal cation, halide anion and central cation, providing an overview of the opportunities and challenges associated with applying anomalous X-ray diffraction to hybrid metal halide perovskites. The results are consistent with model calculations on (pseudo-)cubic perovskite structures.

异常x射线衍射已被应用于生物和无机体系的结构测定。通过改变特定元素的吸收边缘周围的x射线能量来创建元素对比的能力使其成为探测和定位晶体结构内特定元素的可行工具,为标准x射线衍射提供有价值的补充信息。考虑到光伏应用中杂化有机-无机钙钛矿的大量研究,令人惊讶的是对这些材料的异常衍射实验的探索相当不足。近年来,混合卤化铅钙钛矿材料已经发展成为下一代光伏器件的有前途的材料类别,以及进一步的应用。x射线衍射方法,包括掠入射和原位技术,通常用于结构研究。本文介绍了杂化金属卤化物钙钛矿各组分的异常衍射研究,即金属阳离子、卤化物阴离子和中心阳离子,概述了将异常x射线衍射应用于杂化金属卤化物钙钛矿的机遇和挑战。结果与(拟)立方钙钛矿结构的模型计算一致。
{"title":"Anomalous X-ray diffraction on hybrid perovskite thin films: results and challenges.","authors":"Lena Merten, Paul Zimmermann, Niels Scheffczyk, Ekaterina Kneschaurek, Valentin Munteanu, Alina Weiss, Azat Khadiev, Alexander Hinderhofer, Frank Schreiber","doi":"10.1107/S1600576725009951","DOIUrl":"10.1107/S1600576725009951","url":null,"abstract":"<p><p>Anomalous X-ray diffraction has been applied for structure determination in both biological and inorganic systems. The ability to create elemental contrast by varying the X-ray energy around the absorption edge of a specific element makes it a viable tool to probe and locate specific elements within a crystal structure, providing valuable complementary information to standard X-ray diffraction. Considering the large amount of research on hybrid organic-inorganic perovskites for photovoltaic applications, it is surprising that anomalous diffraction experiments on these materials are rather under-explored. In recent years, hybrid lead halide perovskite materials have evolved as a promising material class for next-generation photovoltaic devices, as well as further applications. X-ray diffraction methods, including grazing-incidence and <i>in situ</i> techniques, are routinely implemented for structural investigations. This work presents anomalous diffraction studies on each component of hybrid metal halide perovskites, <i>i.e.</i> metal cation, halide anion and central cation, providing an overview of the opportunities and challenges associated with applying anomalous X-ray diffraction to hybrid metal halide perovskites. The results are consistent with model calculations on (pseudo-)cubic perovskite structures.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"58 Pt 6","pages":"2125-2133"},"PeriodicalIF":2.8,"publicationDate":"2025-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12810543/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998099","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A bond valence sum method to identify potential new fluoride ion conductors. 用键价和法鉴定潜在的新型氟离子导体。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-11-28 eCollection Date: 2025-12-01 DOI: 10.1107/S1600576725009574
Robbie Shaw, Gabriel E Pérez, Helen Playford, Stephen Hull

The bond valence sum (BVS) method has been extensively used to probe the ionic diffusion pathways within solids possessing high ionic conductivities, both anionic and cationic. For the former, the presence of lone-pair cations such as Tl+, Sn2+, Pb2+, Sb3+ and Bi3+ is known to enhance the anionic conductivity of solids by promoting disorder within the anion substructure and lowering the energy barriers between lattice sites. However, the BVS formalism assumes spherical ions and does not include the possibility of the more irregular co-ordination environments associated with electron lone pairs. We present here a simple modification of the BVS approach, which has been implemented in the form of a Python program that permits the preferred F- diffusion pathways to be determined in fluoride ion conductors containing lone-pair cations. The method has been benchmarked by calculating energy barriers that broadly correlate with the F- ionic conductivities of known compounds, and successfully reproduces the F- distribution within the highly conducting compound β-PbSnF4 determined by neutron powder diffraction and molecular dynamics (MD) methods. Using this new approach, fluoride compounds within the Inorganic Crystal Structure Database that contain at least one lone-pair cation have been screened and several new potential F- ion conductors have been identified.

键价和(BVS)方法已被广泛用于探测具有高离子电导率的固体(阴离子和阳离子)内的离子扩散途径。对于前者,已知孤对阳离子如Tl+, Sn2+, Pb2+, Sb3+和Bi3+的存在通过促进阴离子亚结构内的无序和降低晶格位之间的能垒来增强固体的阴离子导电性。然而,BVS的形式假设是球形离子,不包括与电子孤对相关的不规则配位环境的可能性。我们在这里提出了对BVS方法的一个简单修改,该方法已以Python程序的形式实现,该程序允许在包含孤对阳离子的氟离子导体中确定首选F-扩散路径。该方法通过计算与已知化合物的F离子电导率广泛相关的能垒作为基准,并成功地再现了高导电性化合物β-PbSnF4内的F-分布,这是由中子粉末衍射和分子动力学(MD)方法确定的。使用这种新方法,无机晶体结构数据库中含有至少一个孤对阳离子的氟化物化合物已经被筛选出来,并且已经确定了几个新的潜在的F离子导体。
{"title":"A bond valence sum method to identify potential new fluoride ion conductors.","authors":"Robbie Shaw, Gabriel E Pérez, Helen Playford, Stephen Hull","doi":"10.1107/S1600576725009574","DOIUrl":"10.1107/S1600576725009574","url":null,"abstract":"<p><p>The bond valence sum (BVS) method has been extensively used to probe the ionic diffusion pathways within solids possessing high ionic conductivities, both anionic and cationic. For the former, the presence of lone-pair cations such as Tl<sup>+</sup>, Sn<sup>2+</sup>, Pb<sup>2+</sup>, Sb<sup>3+</sup> and Bi<sup>3+</sup> is known to enhance the anionic conductivity of solids by promoting disorder within the anion substructure and lowering the energy barriers between lattice sites. However, the BVS formalism assumes spherical ions and does not include the possibility of the more irregular co-ordination environments associated with electron lone pairs. We present here a simple modification of the BVS approach, which has been implemented in the form of a Python program that permits the preferred F<sup>-</sup> diffusion pathways to be determined in fluoride ion conductors containing lone-pair cations. The method has been benchmarked by calculating energy barriers that broadly correlate with the F<sup>-</sup> ionic conductivities of known compounds, and successfully reproduces the F<sup>-</sup> distribution within the highly conducting compound β-PbSnF<sub>4</sub> determined by neutron powder diffraction and molecular dynamics (MD) methods. Using this new approach, fluoride compounds within the Inorganic Crystal Structure Database that contain at least one lone-pair cation have been screened and several new potential F<sup>-</sup> ion conductors have been identified.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"58 Pt 6","pages":"2134-2143"},"PeriodicalIF":2.8,"publicationDate":"2025-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12810542/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Direct calculation of variable-resolution maps by fully analytic approximations to atomic images. 通过原子图像的完全解析近似直接计算可变分辨率图。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-11-26 eCollection Date: 2025-12-01 DOI: 10.1107/S1600576725010167
Alexandre G Urzhumtsev, Vladimir Y Lunin

Crystallographic maps are typically computed as Fourier series using complex-valued structure factors, with a single set of coefficients applied across the entire region and associating a single resolution value with the whole map. In cryo-electron microscopy, however, experimental maps often have variable local resolution. As a consequence, applying the same procedure to compute model maps for comparison with the respective experimental ones becomes complicated. An alternative strategy involves representing model maps as sums of atomic images. They are oscillatory functions of the distance from the atomic center and depend on atomic displacement parameters and local resolution. To calculate such maps, we propose a stand-alone program which uses the shell-function approximation of atomic images, making them analytic functions of all their parameters including the local resolution associated with each atom.

晶体图通常使用复值结构因子作为傅立叶级数计算,在整个区域应用一组系数,并将单个分辨率值与整个地图相关联。然而,在低温电子显微镜中,实验图通常具有可变的局部分辨率。因此,应用相同的程序来计算模型图以与各自的实验图进行比较变得复杂。另一种策略是将模型映射表示为原子图像的总和。它们是离原子中心距离的振荡函数,依赖于原子位移参数和局部分辨率。为了计算这样的映射,我们提出了一个独立的程序,它使用原子图像的壳函数近似,使它们成为所有参数的解析函数,包括与每个原子相关的局部分辨率。
{"title":"Direct calculation of variable-resolution maps by fully analytic approximations to atomic images.","authors":"Alexandre G Urzhumtsev, Vladimir Y Lunin","doi":"10.1107/S1600576725010167","DOIUrl":"10.1107/S1600576725010167","url":null,"abstract":"<p><p>Crystallographic maps are typically computed as Fourier series using complex-valued structure factors, with a single set of coefficients applied across the entire region and associating a single resolution value with the whole map. In cryo-electron microscopy, however, experimental maps often have variable local resolution. As a consequence, applying the same procedure to compute model maps for comparison with the respective experimental ones becomes complicated. An alternative strategy involves representing model maps as sums of atomic images. They are oscillatory functions of the distance from the atomic center and depend on atomic displacement parameters and local resolution. To calculate such maps, we propose a stand-alone program which uses the shell-function approximation of atomic images, making them analytic functions of all their parameters including the local resolution associated with each atom.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"58 Pt 6","pages":"2144-2148"},"PeriodicalIF":2.8,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12810541/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998112","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Quantifying interflake ordering in graphene oxide films via wide-angle X-ray scattering analysis. 利用广角x射线散射分析定量氧化石墨烯薄膜的片间有序。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-11-26 eCollection Date: 2025-12-01 DOI: 10.1107/S1600576725008714
Roque Sanchez Salas, Aaron Morelos Gomez, David Angel Sanchez Hernandez, Sandra Loera Serna

We report a methodology based on wide-angle X-ray scattering (WAXS) to quantify the ordering between graphene oxide (GO) flakes in self-assembled films. By comparing WAXS signals of GO and graphite, we extract orientation distribution coefficients (S) from the GO 001 and (100) scattering features. To characterize the anisotropy in flake alignment, we define a ratio parameter (R) as the quotient of orientation distribution coefficients obtained under orthogonal orientations from the normal direction of the GO film with respect to the X-ray beam. This dimensionless ratio allows us to assess the degree of meso-structural anisotropy and condenses comparative orientation information into a single dimensionless metric, providing a new structural parameter for GO and related layered materials. In our measurements, R reached values of 0.11 for the GO 001 signal. These results demonstrate a metric for characterizing anisotropy in disordered 2D materials.

我们报告了一种基于广角x射线散射(WAXS)的方法来量化自组装膜中氧化石墨烯(GO)薄片之间的顺序。通过对比氧化石墨烯和石墨烯的WAXS信号,我们从氧化石墨烯001和(100)散射特征中提取了取向分布系数(S)。为了表征薄片排列中的各向异性,我们将比值参数(R)定义为正交取向下从氧化石墨烯薄膜法向相对于x射线束的取向分布系数的商。这种无量纲比使我们能够评估细观结构各向异性的程度,并将比较取向信息浓缩为单一的无量纲度量,为氧化石墨烯和相关层状材料提供了新的结构参数。在我们的测量中,GO 001信号的R值达到0.11。这些结果证明了一种表征无序二维材料各向异性的度量。
{"title":"Quantifying interflake ordering in graphene oxide films via wide-angle X-ray scattering analysis.","authors":"Roque Sanchez Salas, Aaron Morelos Gomez, David Angel Sanchez Hernandez, Sandra Loera Serna","doi":"10.1107/S1600576725008714","DOIUrl":"10.1107/S1600576725008714","url":null,"abstract":"<p><p>We report a methodology based on wide-angle X-ray scattering (WAXS) to quantify the ordering between graphene oxide (GO) flakes in self-assembled films. By comparing WAXS signals of GO and graphite, we extract orientation distribution coefficients (<i>S</i>) from the GO 001 and (100) scattering features. To characterize the anisotropy in flake alignment, we define a ratio parameter (<i>R</i>) as the quotient of orientation distribution coefficients obtained under orthogonal orientations from the normal direction of the GO film with respect to the X-ray beam. This dimensionless ratio allows us to assess the degree of meso-structural anisotropy and condenses comparative orientation information into a single dimensionless metric, providing a new structural parameter for GO and related layered materials. In our measurements, <i>R</i> reached values of 0.11 for the GO 001 signal. These results demonstrate a metric for characterizing anisotropy in disordered 2D materials.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"58 Pt 6","pages":"2105-2111"},"PeriodicalIF":2.8,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12810526/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998226","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
X-ray data reconstruction from incomplete data sampling. 从不完全数据采样中重建x射线数据。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-11-26 eCollection Date: 2025-12-01 DOI: 10.1107/S1600576725010003
Kárel García Medina, Ernesto Estevez Rams, Reinhard B Neder

For specific setups, a diffraction pattern can contain gaps or missing information. For example, that is the case when several detectors are used simultaneously, but a particular angular range is not covered between each detector. In this article, a procedure for the reconstruction of the missing signal is proposed. It is based on a modified Papoulis-Gerchberg algorithm that considers features of the diffraction pattern without loss of generality. The mathematical basis of the algorithm is presented, and several cases, simulated and experimental, are used to test the performance and robustness of the proposed solution.

对于特定的设置,衍射图案可能包含间隙或缺少信息。例如,当同时使用几个检测器,但每个检测器之间没有覆盖特定的角度范围时,就会出现这种情况。本文提出了一种重建缺失信号的方法。它是基于一种改进的Papoulis-Gerchberg算法,该算法考虑了衍射图案的特征而又不失一般性。给出了该算法的数学基础,并通过仿真和实验验证了该算法的性能和鲁棒性。
{"title":"X-ray data reconstruction from incomplete data sampling.","authors":"Kárel García Medina, Ernesto Estevez Rams, Reinhard B Neder","doi":"10.1107/S1600576725010003","DOIUrl":"10.1107/S1600576725010003","url":null,"abstract":"<p><p>For specific setups, a diffraction pattern can contain gaps or missing information. For example, that is the case when several detectors are used simultaneously, but a particular angular range is not covered between each detector. In this article, a procedure for the reconstruction of the missing signal is proposed. It is based on a modified Papoulis-Gerchberg algorithm that considers features of the diffraction pattern without loss of generality. The mathematical basis of the algorithm is presented, and several cases, simulated and experimental, are used to test the performance and robustness of the proposed solution.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"58 Pt 6","pages":"2090-2104"},"PeriodicalIF":2.8,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12810517/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998215","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Room-temperature structure determination of vacuum-sensitive organic compounds by formvar encapsulation and serial electron diffraction. 真空敏感有机化合物的甲醛包封和连续电子衍射室温结构测定。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-11-26 eCollection Date: 2025-12-01 DOI: 10.1107/S1600576725009823
Sreelaja Pulleri Vadhyar, Ehsan Nikbin, Hazem Daoud, Jane Y Howe, R J Dwayne Miller

Samples used in electron microscopy are traditionally required to be stable under vacuum. However, many organic compounds with high vapor pressures readily sublime at room temperature, a process that is further accelerated under the high-vacuum conditions of an electron microscope. Here, we demonstrate for the first time the structure determination of vacuum-sensitive organic compounds in their solid state at room temperature using electron crystallography. Serial electron diffraction was employed to obtain sub-Å-resolution structures of anthracene and pyrene, two representative organic molecules which sublimate under the high-vacuum conditions of a transmission electron microscope. This was made possible by a simple sample preparation technique in which ultrathin crystals are encapsulated with a formvar layer to prevent sublimation under vacuum. By combining serial electron diffraction with formvar encapsulation, we demonstrate high-resolution structure determination of vacuum-sensitive samples at room temperature rather than cryogenic conditions. Moreover, by avoiding low-temperature phase transitions that can alter material properties, this method expands the accessible temperature range for studying the structural characteristics of vacuum-sensitive materials.

电子显微镜中使用的样品传统上要求在真空下稳定。然而,许多具有高蒸汽压的有机化合物在室温下很容易升华,这一过程在电子显微镜下的高真空条件下进一步加速。在这里,我们首次展示了在室温下真空敏感有机化合物固态结构的电子晶体学测定。利用连续电子衍射获得了在透射电镜高真空条件下升华的两种代表性有机分子蒽和芘的亚-Å-resolution结构。这是通过一种简单的样品制备技术实现的,在这种技术中,超薄晶体被封装在一个formvar层中,以防止在真空下升华。通过将序列电子衍射与formvar封装相结合,我们证明了在室温而不是低温条件下真空敏感样品的高分辨率结构测定。此外,通过避免可能改变材料性能的低温相变,该方法扩大了研究真空敏感材料结构特性的可及温度范围。
{"title":"Room-temperature structure determination of vacuum-sensitive organic compounds by formvar encapsulation and serial electron diffraction.","authors":"Sreelaja Pulleri Vadhyar, Ehsan Nikbin, Hazem Daoud, Jane Y Howe, R J Dwayne Miller","doi":"10.1107/S1600576725009823","DOIUrl":"10.1107/S1600576725009823","url":null,"abstract":"<p><p>Samples used in electron microscopy are traditionally required to be stable under vacuum. However, many organic compounds with high vapor pressures readily sublime at room temperature, a process that is further accelerated under the high-vacuum conditions of an electron microscope. Here, we demonstrate for the first time the structure determination of vacuum-sensitive organic compounds in their solid state at room temperature using electron crystallography. Serial electron diffraction was employed to obtain sub-Å-resolution structures of anthracene and pyrene, two representative organic molecules which sublimate under the high-vacuum conditions of a transmission electron microscope. This was made possible by a simple sample preparation technique in which ultrathin crystals are encapsulated with a formvar layer to prevent sublimation under vacuum. By combining serial electron diffraction with formvar encapsulation, we demonstrate high-resolution structure determination of vacuum-sensitive samples at room temperature rather than cryogenic conditions. Moreover, by avoiding low-temperature phase transitions that can alter material properties, this method expands the accessible temperature range for studying the structural characteristics of vacuum-sensitive materials.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"58 Pt 6","pages":"2119-2124"},"PeriodicalIF":2.8,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12810524/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Revisiting the structures and phase transitions of PrNiO3 nickelate using symmetry-mode analysis. 用对称模式分析重温镍酸PrNiO3的结构和相变。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-11-26 eCollection Date: 2025-12-01 DOI: 10.1107/S1600576725009380
Wajdi Cherif, José Antonio Alonso, João Elias F S Rodrigues

We have investigated the complete sequence of temperature-induced structural phase transitions in PrNiO3 using high-angular-resolution synchrotron X-ray diffraction and symmetry-adapted distortion-mode analysis. By employing a high-purity sample synthesized under high pressure (3.5 GPa at 1073 K), we resolve the monoclinic (P21/n) → orthorhombic (Pbnm) → rhombohedral (R3c) evolution over an extended temperature range (10-900 K). Beyond confirming the role of oxygen stretching modes in the insulator-metal transition at ∼130 K, we show that these phonon modes also govern the high-temperature metallic-metallic transition at ∼750 K. This work provides a comprehensive mode-resolved picture of both insulator and metallic regimes in PrNiO3 and highlights the central role of phonon-mediated processes in driving charge disproportionation and lattice symmetry breaking across all the crystalline phases.

我们利用高角分辨率同步x射线衍射和对称适应畸变模式分析研究了PrNiO3中温度诱导结构相变的完整序列。通过在高压下(3.5 GPa, 1073 K)合成的高纯度样品,我们分析了单斜晶(P21/n)→正交晶(Pbnm)→菱形晶(R3c)在扩展温度范围(10-900 K)下的演化过程。除了确认氧拉伸模式在~ 130 K绝缘体-金属转变中的作用外,我们还表明这些声子模式也控制着~ 750 K的高温金属-金属转变。这项工作提供了PrNiO3中绝缘体和金属状态的全面模式分辨图像,并强调了声子介导的过程在驱动所有晶体相的电荷歧化和晶格对称破缺中的核心作用。
{"title":"Revisiting the structures and phase transitions of PrNiO<sub>3</sub> nickelate using symmetry-mode analysis.","authors":"Wajdi Cherif, José Antonio Alonso, João Elias F S Rodrigues","doi":"10.1107/S1600576725009380","DOIUrl":"10.1107/S1600576725009380","url":null,"abstract":"<p><p>We have investigated the complete sequence of temperature-induced structural phase transitions in PrNiO<sub>3</sub> using high-angular-resolution synchrotron X-ray diffraction and symmetry-adapted distortion-mode analysis. By employing a high-purity sample synthesized under high pressure (3.5 GPa at 1073 K), we resolve the monoclinic (<i>P</i>2<sub>1</sub>/<i>n</i>) → orthorhombic (<i>Pbnm</i>) → rhombohedral (<i>R</i>3<i>c</i>) evolution over an extended temperature range (10-900 K). Beyond confirming the role of oxygen stretching modes in the insulator-metal transition at ∼130 K, we show that these phonon modes also govern the high-temperature metallic-metallic transition at ∼750 K. This work provides a comprehensive mode-resolved picture of both insulator and metallic regimes in PrNiO<sub>3</sub> and highlights the central role of phonon-mediated processes in driving charge disproportionation and lattice symmetry breaking across all the crystalline phases.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"58 Pt 6","pages":"2112-2118"},"PeriodicalIF":2.8,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12810527/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998199","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Applied Crystallography
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1