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Fundamental motifs and parity within the crystallographic point groups. 晶体学点群中的基本母基和宇称。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-29 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725005631
Maureen M Julian, Matthew Macauley

This paper analyzes the Hasse diagram, or family tree, of the 3D crystal classes, also called geometric crystal classes. The 32 point-group classes are partitioned into seven crystal systems. In this paper, the structures of these systems are analyzed, leading to a new understanding of the relationships among and within them. The point groups, including their subgroups up to conjugacy, appear in six structural motifs in the Hasse diagram or family tree. Each motif has a parity - even or odd - that determines its structure. In three dimensions, the odd motifs are called monads, trigonals and cubics, and the even motifs are called dyads, tetragonals and hexagonals. Of the 32 classes of 3D point groups, 29 have a well defined parity, in that they appear in either an even or an odd motif. In contrast, the three monoclinic point groups are 'ambidextrous', in that they appear in two motifs, one of each parity. An analysis of the ten 2D point groups reveals an analogous structure, except for the presence of an ambidextrous crystal system. The striking structural uniformity of the motifs across the Hasse diagram confirms that they are essential building blocks of the crystallographic point groups.

本文分析了三维晶体类(也称为几何晶体类)的Hasse图或家族树。32个点群类被划分为7个晶体系统。本文对这些系统的结构进行了分析,从而对它们之间和内部的关系有了新的认识。点群,包括它们的子群直到共轭,出现在Hasse图或家族树的六个结构基元中。每个母题都有奇偶奇偶,这决定了它的结构。在三维空间中,奇数图案被称为单面、三角形和立方体,偶数图案被称为双体、四边形和六边形。在32类三维点群中,有29类具有定义良好的奇偶性,即它们出现在偶数或奇数基元中。相反,三个单斜点群是“双灵巧的”,因为它们出现在两个母题中,每个母题各有一个宇称。对十个二维点群的分析揭示了一个类似的结构,除了一个双灵巧晶体系统的存在。哈塞图上惊人的结构均匀性证实了它们是晶体学点群的基本组成部分。
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引用次数: 0
Oblique diffraction geometry for the observation of several non-coplanar Bragg reflections under identical illumination. 在相同光照下观察若干非共面布拉格反射的斜衍射几何。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-29 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725005862
Carsten Detlefs, Axel Henningsson, Brinthan Kanesalingam, Adam A W Cretton, Cedric Corley-Wiciak, Felix T Frankus, Dayeeta Pal, Sara Irvine, Sina Borgi, Henning F Poulsen, Can Yildirim, Leora E Dresselhaus-Marais

A method to determine the strain tensor and local lattice rotation with dark-field X-ray microscopy is presented. Using a set of at least three non-coplanar symmetry-equivalent Bragg reflections, the illuminated volume of the sample can be kept constant for all reflections, facilitating easy registration of the measured lattice variations. This requires an oblique diffraction geometry, i.e. the diffraction plane is neither horizontal nor vertical. We derive a closed analytical expression that allows determination of the strain and lattice rotation from the deviation of experimental observables (e.g. goniometer angles) from their nominal values for an unstrained lattice.

提出了一种用暗场x射线显微镜测定应变张量和局部晶格旋转的方法。使用一组至少三个非共面对称等效布拉格反射,样品的照射体积可以在所有反射中保持恒定,便于测量晶格变化的配准。这需要一个斜衍射几何,即衍射面既不是水平的也不是垂直的。我们推导出一个封闭的解析表达式,允许从实验观测值(例如测角)与其标称值的偏差来确定应变和晶格旋转。
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引用次数: 0
High-energy diffuse X-ray scattering at ultra-small-angle grazing incidence for local structure study of single-crystalline thin films. 超小角掠入射高能漫射x射线散射在单晶薄膜局部结构研究中的应用。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-29 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725005837
Joohee Bang, Nives Strkalj, Martin F Sarott, Yevheniia Kholina, Morgan Trassin, Thomas Weber

We present a novel experimental approach employing high-energy X-ray scattering in ultra-small-angle grazing-incidence geometry to investigate local atomic structures in single-crystalline thin films. This non-destructive and non-invasive method overcomes the limitations of conventional moderate-energy grazing-incidence diffraction, achieving both high reciprocal-space resolution and coverage and high surface sensitivity. By leveraging high-energy X-ray diffraction, we enable quantitative analysis of local structures in the model system of ferroelectric PbTiO3 and dielectric SrTiO3 superlattices through three-dimensional difference pair distribution function analysis. The approach provides detailed insights into atomic structures in single-crystalline thin films with local order, capturing information on spatial correlations within and across unit cells.

我们提出了一种新的实验方法,利用超小角掠入射几何的高能x射线散射来研究单晶薄膜中的局部原子结构。这种非破坏性和非侵入性的方法克服了传统的中能量掠入射衍射的局限性,实现了高的互向空间分辨率和覆盖范围以及高的表面灵敏度。利用高能x射线衍射技术,通过三维差分对分布函数分析,对铁电PbTiO3和介电SrTiO3超晶格模型系统中的局部结构进行了定量分析。该方法提供了对单晶薄膜中具有局部顺序的原子结构的详细见解,捕获了单元胞内和单元胞间空间相关性的信息。
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引用次数: 0
On the use of beam precession for serial electron crystallography. 束流进动在连续电子晶体学中的应用。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-25 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725005606
Sergi Plana-Ruiz, Penghan Lu, Govind Ummethala, Rafal E Dunin-Borkowski

During the past few years, serial electron crystallography (serial electron diffraction) has been gaining attention for the structure determination of crystalline compounds that are sensitive to irradiation by an electron beam. By recording a single electron diffraction pattern per crystal, indexing thousands to tens of thousands of such patterns and merging the reflection intensities of the successfully indexed patterns, one can retrieve crystal structure models with strongly mitigated beam damage contributions. However, one of the technique's bottlenecks is the need to obtain so many well indexed diffraction patterns, which leads to the collection of raw diffraction data in an automated way that usually yields low indexing rates. This work demonstrates how to overcome this limitation by performing the serial crystallography experiment following a semi-automated routine with a precessed electron beam (serial precession electron diffraction). The precession movement increases the number of reflections present in the diffraction patterns, and dynamical effects related to specific orientations of the crystals with respect to the electron beam are greatly minimized. This leads to more uniform reflection intensities across the serial data set, and a smaller number of patterns are required to merge the reflection intensities for good statistics. Furthermore, structure refinements based on the dynamical diffraction theory become possible due to the diffraction volume integration of beam precession, providing a novel approach for more accurate structure models. In this context, the use of beam precession is presented as an advantageous tool for serial electron crystallography, as it enables reliable crystal structure analysis with a lower amount of diffraction data.

在过去的几年里,连续电子晶体学(连续电子衍射)在确定对电子束辐照敏感的晶体化合物的结构方面受到了广泛的关注。通过记录每个晶体的单个电子衍射模式,索引数千到数万个这样的模式,并合并成功索引模式的反射强度,可以检索具有强烈减轻光束损伤贡献的晶体结构模型。然而,该技术的瓶颈之一是需要获得如此多的索引良好的衍射图案,这导致以自动化的方式收集原始衍射数据,通常产生低索引率。这项工作演示了如何克服这一限制,通过执行连续晶体学实验,遵循半自动化常规与进动电子束(连续进动电子衍射)。旋进运动增加了衍射图样中反射的数量,并且与电子束晶体的特定取向有关的动力学效应被大大降低。这导致整个串行数据集的反射强度更加均匀,并且需要更少的模式来合并反射强度以获得良好的统计数据。此外,由于光束进动的衍射体积积分,基于动态衍射理论的结构细化成为可能,为更精确的结构模型提供了新的途径。在这种情况下,使用光束进动被认为是一种有利的连续电子晶体学工具,因为它可以用较少的衍射数据进行可靠的晶体结构分析。
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引用次数: 0
Inversion of the X-ray restrained wavefunction equations: a first step towards the development of exchange-correlation functionals based on X-ray data. x射线约束波函数方程的反演:基于x射线数据的交换相关函数发展的第一步。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-25 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725004765
Alessandro Genoni, Maurizio Sironi

The X-ray restrained wavefunction (XRW) method is a quantum crystallographic technique that enables the determination of wavefunctions compatible with experimental X-ray diffraction data. Extensive research has demonstrated that this strategy inherently captures electron correlation and polarization effects on the electron density, while also providing consistent electron distributions. These findings suggest that the approach could be valuable in the development of new exchange-correlation (xc) functionals for density functional theory (DFT) calculations. This is particularly relevant in light of recent observations and recommendations by Medvedev et al. [Science (2017), 355, 49-52], who stressed the importance that xc functionals give both accurate energy values and exact electron densities, in line with the original spirit of DFT. Motivated by this perspective, this paper presents a preliminary investigation that aims at extracting and visualizing for the first time the perturbation potentials arising from the use of X-ray diffraction data as restraints in XRW calculations. In the present work, these potentials are simply obtained as orbital-averaged potentials through straightforward inversions of the XRW equations, where theoretical or high-quality experimental X-ray structure factors are employed in XRW computations at the restricted Hartree-Fock level for atoms (neon, argon and krypton) and simple molecules (dilithium and urea). Features and limitations of the resulting preliminary potentials are illustrated, while future perspectives on the use of the XRW method for the development of xc functionals are also discussed.

x射线约束波函数(XRW)方法是一种量子晶体学技术,可以确定与实验x射线衍射数据兼容的波函数。广泛的研究表明,这种策略固有地捕获了电子密度的电子相关和极化效应,同时也提供了一致的电子分布。这些发现表明,该方法在开发用于密度泛函理论(DFT)计算的新的交换相关(xc)泛函中可能是有价值的。鉴于梅德韦杰夫等人最近的观察和建议,这一点尤为重要。[Science(2017), 355, 49-52],他们强调xc官能团给出准确的能量值和精确的电子密度的重要性,符合DFT的原始精神。基于这一观点,本文提出了一项初步研究,旨在首次提取和可视化利用x射线衍射数据作为XRW计算约束所产生的微扰势。在目前的工作中,这些势通过XRW方程的直接反转简单地作为轨道平均势获得,其中理论或高质量的实验x射线结构因子用于限制Hartree-Fock水平下原子(氖、氩和氪)和简单分子(镝和尿素)的XRW计算。说明了所产生的初步潜力的特征和局限性,同时还讨论了使用XRW方法开发xc函数的未来前景。
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引用次数: 0
Opportunities for near-surface small-angle neutron scattering to probe magnetic nanostructures within thin-film volumes. 近表面小角中子散射探测薄膜内磁性纳米结构的机会。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-22 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725005503
Grace L Causer

Near-surface small-angle neutron scattering (NS-SANS) is a highly versatile, yet under-utilized, technique in condensed matter research. It addresses the shortcomings of transmission SANS to enable the characterization of nano-structures within extremely small sample volumes in the thin-film limit. NS-SANS stands out in its capacity to resolve 1D, 2D or 3D structural, chemical and magnetic correlations beneath the surfaces of thin films with nanometre resolution. By varying the incident angle above the critical angle of reflection, NS-SANS delivers tuneable depth sensitivity across nano-confined volumes, effectively minimizing noise contributions from substrates while surpassing the surface-sensitive capabilities of grazing-incidence SANS. This perspective highlights the future potential of NS-SANS to study condensed matter thin films and heterostructures, with a special focus on nanoscale magnetic phenomena, such as topological skyrmion lattices, superconducting vortex lattices and chiral domain walls, which are of timely interest to the magnetism and quantum materials communities.

近表面小角中子散射(NS-SANS)是凝聚态物质研究中一种用途广泛但尚未得到充分利用的技术。它解决了传输SANS的缺点,以便在薄膜限制的极小样品体积内表征纳米结构。NS-SANS在其以纳米分辨率解决薄膜表面下的1D, 2D或3D结构,化学和磁性相关性的能力方面脱颖而出。通过在临界反射角以上改变入射角,NS-SANS在纳米限制体积内提供可调谐的深度灵敏度,有效地减少了衬底的噪声贡献,同时超越了掠入射SANS的表面敏感能力。这一观点强调了NS-SANS在研究凝聚态薄膜和异质结构方面的未来潜力,特别关注纳米尺度的磁性现象,如拓扑斯基米子晶格、超导涡旋晶格和手性畴壁,这些都是磁性和量子材料界的兴趣所在。
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引用次数: 0
Optimization of magnetic reference layer for neutron reflectometry. 中子反射计磁参比层的优化。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-22 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725004674
Anton Zubayer, Fredrik Eriksson, Naureen Ghafoor, Jochen Stahn, Jens Birch, Artur Glavic

Neutron reflectivity is a powerful technique for probing density profiles in films, with applications across physics, chemistry and biology. However, challenges arise when dealing with samples characterized by high roughness, unknown scattering length density (SLD) with low contrast, very thin layers or complex multi-layered structures that cannot be uniquely resolved due to the phase problem. Incorporating a magnetic reference layer (MRL) and using polarized neutron reflectivity improves the sensitivity and modelling accuracy by providing complementary information. In this study, we introduce a quantitative means of comparing MRL systems in a model-free way. We apply this approach to demonstrate that CoTi alloys offer a superior solution as MRLs compared with the commonly used Fe or Ni MRLs. The low nuclear and magnetic scattering length densities of CoTi significantly enhance sensitivity, making it particularly advantageous for soft-matter research. Furthermore, the tunable Co versus Ti ratio allows for optimization of the SLD to achieve maximum sensitivity, establishing CoTi as a highly effective choice for MRL applications. The applied simulation framework for optimizing MRL sensitivity to a specific materials system and research question is a generic approach that can be used prior to growing the MRL for a given experiment.

中子反射率是探测薄膜密度分布的一种强大技术,在物理、化学和生物学领域都有应用。然而,当处理具有高粗糙度、低对比度的未知散射长度密度(SLD)、非常薄的层或复杂的多层结构的样品时,由于相位问题无法唯一地解决,就会出现挑战。结合磁参考层(MRL)和极化中子反射率,通过提供互补信息,提高了灵敏度和建模精度。在本研究中,我们引入了一种以无模型方式比较MRL系统的定量方法。我们采用这种方法来证明,与常用的Fe或Ni MRLs相比,CoTi合金提供了更好的MRLs解决方案。CoTi的低核和磁散射长度密度显著提高了灵敏度,特别有利于软物质研究。此外,可调的Co / Ti比率允许优化SLD以实现最大灵敏度,使CoTi成为MRL应用的高效选择。优化MRL对特定材料系统和研究问题的敏感性的应用模拟框架是一种通用方法,可以在为给定实验培养MRL之前使用。
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引用次数: 0
Powder diffraction data beyond the pattern: a practical review. 粉末衍射数据超越模式:实用回顾。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-22 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725004728
Nicola Casati, Elena Boldyreva

We share personal experience in the fields of materials science and high-pressure research, discussing which parameters, in addition to positions of peak maxima and intensities, may be important to control and to document in order to make deposited powder diffraction data reusable, reproducible and replicable. We discuss, in particular, which data can be considered as 'raw' and some challenges of revisiting deposited powder diffraction data. We consider procedures such as identifying ('fingerprinting') a known phase in a sample, solving a bulk crystal structure from powder data, and analyzing the size of coherently scattering domains, lattice strain, the type of defects or preferred orientation of crystallites. The specific case of characterizing a multi-phase multi-grain sample following in situ structural changes during mechanical treatment in a mill or on hydrostatic compression is also examined. We give examples of when revisiting old data adds a new knowledge and comment on the challenges of using deposited data for machine learning.

我们分享了在材料科学和高压研究领域的个人经验,讨论了除了峰值和强度的位置之外,哪些参数可能是重要的控制和记录,以使沉积的粉末衍射数据可重复使用,可再现和可复制。我们特别讨论了哪些数据可以被认为是“原始的”,以及重新访问沉积的粉末衍射数据的一些挑战。我们考虑的程序包括识别(“指纹”)样品中的已知相,从粉末数据中求解大块晶体结构,以及分析相干散射域的大小,晶格应变,缺陷类型或晶体的首选取向。还研究了在磨机机械处理或静压过程中,多相多粒样品在原位结构变化后的表征的具体情况。我们给出了一些例子,说明重新访问旧数据可以增加新的知识,并评论了使用沉积数据进行机器学习的挑战。
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引用次数: 0
A systematic approach for quantitative orientation and phase fraction analysis of thin films through grazing-incidence X-ray diffraction. 用掠入射x射线衍射分析薄膜定量取向和相分数的系统方法。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-22 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725004935
Fabian Gasser, Sanjay John, Jorid Smets, Josef Simbrunner, Mario Fratschko, Víctor Rubio-Giménez, Rob Ameloot, Hans-Georg Steinrück, Roland Resel

Grazing-incidence X-ray diffraction (GIXD) is widely used for the structural characterization of thin films, particularly for analyzing phase composition and the orientation distribution of crystallites. While various tools exist for qualitative evaluation, a widely applicable systematic procedure to obtain quantitative information has not yet been developed. This work presents a first step in that direction, allowing accurate quantitative information to be obtained through the evaluation of radial line profiles from GIXD data. An algorithm is introduced for computing radial line profiles based on the crystal structure of known compounds. By fitting experimental data with calculated line profiles, accurate quantitative information about orientation distribution and phase composition is obtained, along with additional parameters such as mosaicity and total crystal volume. The approach is demonstrated using three distinct thin film systems, highlighting the broad applicability of the algorithm. This method provides a systematic and general approach to obtaining quantitative information from GIXD data.

掠入射x射线衍射(GIXD)广泛用于薄膜的结构表征,特别是分析晶体的相组成和取向分布。虽然存在各种定性评价工具,但尚未制定一种广泛适用的系统程序来获得定量信息。这项工作是朝这一方向迈出的第一步,可以通过评估GIXD数据的径向线轮廓来获得准确的定量信息。介绍了一种基于已知化合物晶体结构计算径向线轮廓的算法。通过将实验数据与计算的线轮廓拟合,获得了取向分布和相组成的准确定量信息,以及诸如嵌合性和总晶体体积等附加参数。该方法使用三种不同的薄膜系统进行演示,突出了该算法的广泛适用性。这种方法提供了一种系统的、通用的方法来从GIXD数据中获得定量信息。
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引用次数: 0
Accounting for instrument resolution in the pair distribution functions obtained from total scattering data using Hermite functions. 利用埃尔米特函数计算从总散射数据得到的对分布函数中的仪器分辨率。
IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-22 eCollection Date: 2025-08-01 DOI: 10.1107/S1600576725004340
Shaojie Wang, Min Gao, Yinze Qin, Sijie Zhang, Lei Tan, Martin T Dove

The use of Hermite functions to describe pair distribution functions (PDFs) from total scattering data was previously proposed by Krylov & Vvedenskii [J. Non-Cryst. Solids (1995), 192-193, 683-687]. Hermite functions have a suitable form for describing both the total scattering data and the PDF, and have the useful feature that they are eigenfunctions of the Fourier transform operation. We demonstrate that, by fitting Hermite functions to total scattering data, it is possible to take into account the effects of experimental resolution when deriving the PDF from the scattering data. This is particularly advantageous for neutron time-of-flight data, where different banks of detectors have different resolution functions and the resolution widths vary with the size of the scattering vector. A number of technical points are discussed and illustrated using examples of synthetic data, including both amorphous and crystalline materials. These include a solution to the problem of handling the sharp Bragg peaks, and how to scale the scattering function and PDF to match the scale of the Hermite functions. A number of examples using real scattering data, both synchrotron X-ray and spallation neutron data, are also shown. To account for uncertainties in the levels of the scattering functions, we have modified a method of Billinge & Farrow [J. Phys. Condens. Matter (2013), 25, 454202] to remove backgrounds by fitting with low-order orthogonal (Chebyshev) functions.

Krylov & Vvedenskii [J]先前提出使用Hermite函数来描述来自总散射数据的对分布函数(pdf)。Non-Cryst。固体(1995),192-193,683-687]。埃尔米特函数具有描述总散射数据和PDF的合适形式,并具有傅里叶变换操作的特征函数的有用特征。我们证明,通过对总散射数据拟合Hermite函数,可以在从散射数据导出PDF时考虑实验分辨率的影响。这对于中子飞行时间数据尤其有利,因为不同的探测器组具有不同的分辨率功能,并且分辨率宽度随散射矢量的大小而变化。许多技术要点进行了讨论,并举例说明了合成数据,包括非晶和晶体材料。其中包括处理尖锐布拉格峰问题的解决方案,以及如何缩放散射函数和PDF以匹配Hermite函数的缩放。本文还给出了一些使用实际散射数据的例子,包括同步加速器x射线和散裂中子数据。为了考虑散射函数水平的不确定性,我们修改了Billinge & Farrow [J]的方法。理论物理。提供者。物质(2013),25,454202]用低阶正交(切比雪夫)函数拟合去除背景。
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引用次数: 0
期刊
Journal of Applied Crystallography
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