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Determining pair distribution functions of thin films using laboratory-based X-ray sources. 利用实验室 X 射线源确定薄膜的对分布函数。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-08-30 eCollection Date: 2024-10-01 DOI: 10.1107/S1600576724006368
Johan Bylin, Vassilios Kapaklis, Gunnar K Pálsson

This article demonstrates the feasibility of obtaining accurate pair distribution functions of thin amorphous films down to 80 nm, using modern laboratory-based X-ray sources. The pair distribution functions are obtained using a single diffraction scan without the requirement of additional scans of the substrate or of the air. By using a crystalline substrate combined with an oblique scattering geometry, most of the Bragg scattering of the substrate is avoided, rendering the substrate Compton scattering the primary contribution. By utilizing a discriminating energy filter, available in the latest generation of modern detectors, it is demonstrated that the Compton intensity can further be reduced to negligible levels at higher wavevector values. Scattering from the sample holder and the air is minimized by the systematic selection of pixels in the detector image based on the projected detection footprint of the sample and the use of a 3D-printed sample holder. Finally, X-ray optical effects in the absorption factors and the ratios between the Compton intensity of the substrate and film are taken into account by using a theoretical tool that simulates the electric field inside the film and the substrate, which aids in planning both the sample design and the measurement protocol.

这篇文章展示了利用现代实验室 X 射线源获取小至 80 纳米非晶薄膜的精确线对分布函数的可行性。利用单次衍射扫描即可获得线对分布函数,无需对基底或空气进行额外扫描。通过使用晶体基底和斜向散射几何形状,避免了基底的大部分布拉格散射,从而使基底康普顿散射成为主要贡献。通过利用最新一代现代探测器中的辨别能量滤波器,可以证明在较高的波矢值下,康普顿强度可以进一步降低到可以忽略不计的水平。根据样品的预测探测足迹系统地选择探测器图像中的像素,并使用三维打印样品支架,可以最大限度地减少来自样品支架和空气的散射。最后,通过使用模拟薄膜和基片内部电场的理论工具,考虑了基片和薄膜的吸收因子和康普顿强度比中的 X 射线光学效应,这有助于规划样品设计和测量方案。
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引用次数: 0
Pushing the limits of accessible length scales via a modified Porod analysis in small-angle neutron scattering on ordered systems. 在有序系统的小角中子散射中,通过修正的 Porod 分析法突破可获得长度尺度的极限。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-08-27 eCollection Date: 2024-10-01 DOI: 10.1107/S1600576724007295
Xaver Simon Brems, Sebastian Mühlbauer, Robert Cubitt

Small-angle neutron scattering is a widely used technique to study large-scale structures in bulk samples. The largest accessible length scale in conventional Bragg scattering is determined by the combination of the longest available neutron wavelength and smallest resolvable scattering angle. A method is presented that circumvents this limitation and is able to extract larger length scales from the low-q power-law scattering using a modification of the well known Porod law connecting the scattered intensity of randomly distributed objects to their specific surface area. It is shown that in the special case of a highly aligned domain structure the specific surface area extracted from the modified Porod law can be used to determine specific length scales of the domain structure. The analysis method is applied to study the micrometre-sized domain structure found in the intermediate mixed state of the superconductor niobium. The analysis approach allows the range of accessible length scales to be extended from 1 µm to up to 40 µm using a conventional small-angle neutron scattering setup.

小角中子散射是一种广泛用于研究块状样品中大尺度结构的技术。传统布拉格散射中可获得的最大长度尺度是由最长的可用中子波长和最小的可分辨散射角共同决定的。本文介绍了一种规避这一限制的方法,该方法通过修改将随机分布物体的散射强度与其比表面积联系起来的众所周知的波洛德定律,能够从低q幂律散射中提取更大的长度尺度。研究表明,在高度排列的畴结构的特殊情况下,从修正的 Porod 定律中提取的比表面积可用于确定畴结构的具体长度尺度。该分析方法被用于研究超导体铌的中间混合态中发现的微米大小的畴结构。使用传统的小角中子散射装置,该分析方法可将可获得的长度尺度范围从 1 微米扩展到 40 微米。
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引用次数: 0
The promise of GaAs 200 in small-angle neutron scattering for higher resolution. GaAs 200 在小角中子散射中有望实现更高分辨率。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-08-27 eCollection Date: 2024-10-01 DOI: 10.1107/S1600576724007246
A Magerl, H Lemmel, M Appel, M Weisser, U Kretzer, M Zobel

The Q resolution in Bonse-Hart double-crystal diffractometers is determined for a given Bragg angle by the value of the crystallographic structure factor. To date, the reflections Si 220 or Si 111 have been used exclusively in neutron scattering, which provide resolutions for triple-bounce crystals of about 2 × 10-5 Å-1 (FWHM). The Darwin width of the GaAs 200 reflection is about a factor of 10 smaller, offering the possibility of a Q resolution of 2 × 10-6 Å-1 provided crystals of sufficient quality are available. This article reports a feasibility study with single-bounce GaAs 200, yielding a Q resolution of 4.6 × 10-6 Å-1, six times superior in comparison with a Si 220 setup.

对于给定的布拉格角,Bonse-Hart 双晶衍射仪的 Q 分辨率由晶体结构因子值决定。迄今为止,Si 220 或 Si 111 反射只用于中子散射,它们提供的三弹晶体分辨率约为 2 × 10-5 Å-1(FWHM)。GaAs 200 反射的达尔文宽度要小 10 倍左右,如果有足够质量的晶体,Q 分辨率有可能达到 2 × 10-6 Å-1。本文报告了使用单跳砷化镓 200 进行的可行性研究,得出的 Q 值分辨率为 4.6 × 10-6 Å-1,是硅 220 设置的六倍。
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引用次数: 0
Flow-Xl: a new facility for the analysis of crystallization in flow systems. Flow-Xl:用于分析流动系统结晶的新设备。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-08-19 eCollection Date: 2024-10-01 DOI: 10.1107/S1600576724006113
T D Turner, C O'Shaughnessy, X He, M A Levenstein, L Hunter, J Wojciechowski, H Bristowe, R Stone, C C Wilson, A Florence, K Robertson, N Kapur, F C Meldrum

Characterization of crystallization processes in situ is of great importance to furthering knowledge of how nucleation and growth processes direct the assembly of organic and inorganic materials in solution and, critically, understanding the influence that these processes have on the final physico-chemical properties of the resulting solid form. With careful specification and design, as demonstrated here, it is now possible to bring combined X-ray diffraction and Raman spectroscopy, coupled to a range of fully integrated segmented and continuous flow platforms, to the laboratory environment for in situ data acquisition for timescales of the order of seconds. The facility used here (Flow-Xl) houses a diffractometer with a micro-focus Cu Kα rotating anode X-ray source and a 2D hybrid photon-counting detector, together with a Raman spectrometer with 532 and 785 nm lasers. An overview of the diffractometer and spectrometer setup is given, and current sample environments for flow crystallization are described. Commissioning experiments highlight the sensitivity of the two instruments for time-resolved in situ data collection of samples in flow. Finally, an example case study to monitor the batch crystallization of sodium sulfate from aqueous solution, by tracking both the solute and solution phase species as a function of time, highlights the applicability of such measurements in determining the kinetics associated with crystallization processes. This work illustrates that the Flow-Xl facility provides high-resolution time-resolved in situ structural phase information through diffraction data together with molecular-scale solution data through spectroscopy, which allows crystallization mechanisms and their associated kinetics to be analysed in a laboratory setting.

原位结晶过程的表征对于进一步了解成核和生长过程如何指导溶液中有机和无机材料的组装,以及对于了解这些过程对所形成的固体形式的最终物理化学性质的影响至关重要。正如本文所展示的,通过精心的规范和设计,现在可以将 X 射线衍射和拉曼光谱结合到一系列完全集成的分段和连续流动平台上,在实验室环境中以秒为单位进行现场数据采集。这里使用的设备(Flow-Xl)包括一台配有微焦点 Cu Kα 旋转阳极 X 射线源和二维混合光子计数探测器的衍射仪,以及一台配有 532 和 785 纳米激光器的拉曼光谱仪。报告概述了衍射仪和光谱仪的设置,并介绍了当前用于流动结晶的样品环境。调试实验强调了两台仪器在流动样品的时间分辨原位数据收集方面的灵敏度。最后,通过对溶质和溶液相物种随时间变化的跟踪,介绍了监测水溶液中硫酸钠批量结晶的案例研究,强调了此类测量在确定结晶过程相关动力学方面的适用性。这项工作表明,Flow-Xl 设备可通过衍射数据提供高分辨率的时间分辨原位结构相信息,并通过光谱学提供分子尺度的溶液数据,从而可在实验室环境中分析结晶机制及其相关动力学。
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引用次数: 0
Laboratory-based 3D X-ray standing-wave analysis of nanometre-scale gratings. 基于实验室的纳米级光栅三维 X 射线驻波分析。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-08-19 eCollection Date: 2024-10-01 DOI: 10.1107/S1600576724007179
Ksenia Matveevskii, Konstantin V Nikolaev, Roberto Fallica, Detlef Beckers, Milen Gateshki, Alexander Kharchenko, Bart Spanjer, Alexander Rogachev, Sergey Yakunin, Marcelo Ackermann, Igor A Makhotkin

The increasing structural complexity and downscaling of modern nanodevices require continuous development of structural characterization techniques that support R&D and manufacturing processes. This work explores the capability of laboratory characterization of periodic planar nanostructures using 3D X-ray standing waves as a promising method for reconstructing atomic profiles of planar nanostructures. The non-destructive nature of this metrology technique makes it highly versatile and particularly suitable for studying various types of samples. Moreover, it eliminates the need for additional sample preparation before use and can achieve sub-nanometre reconstruction resolution using widely available laboratory setups, as demonstrated on a diffractometer equipped with a microfocus X-ray tube with a copper anode.

现代纳米器件的结构日益复杂,规模不断缩小,因此需要不断开发结构表征技术,以支持研发和制造过程。这项研究探索了利用三维 X 射线驻波对周期性平面纳米结构进行实验室表征的能力,将其作为重建平面纳米结构原子轮廓的一种有前途的方法。这种计量技术的非破坏性使其用途非常广泛,尤其适合研究各种类型的样品。此外,它无需在使用前进行额外的样品制备,并能利用广泛可用的实验室设备实现亚纳米级的重建分辨率,这一点已在配备了铜阳极微焦 X 射线管的衍射仪上进行了演示。
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引用次数: 0
Revealing nanoscale sorption mechanisms of gases in a highly porous silica aerogel. 揭示高多孔二氧化硅气凝胶中气体的纳米级吸附机制。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-08-19 eCollection Date: 2024-10-01 DOI: 10.1107/S1600576724006794
Phung Nhu Hao Vu, Andrzej P Radlinski, Tomasz Blach, Ralf Schweins, Hartmut Lemmel, John Daniels, Klaus Regenauer-Lieb

Geological formations provide a promising environment for the long-term and short-term storage of gases, including carbon dioxide, hydrogen and hydro-carbons, controlled by the rock-specific small-scale pore structure. This study investigates the nanoscale structure and gas uptake in a highly porous silica aerogel (a synthetic proxy for natural rocks) using transmission electron microscopy, X-ray diffraction, and small-angle and ultra-small-angle neutron scattering with a tracer of deuterated methane (CD4) at pressures up to 1000 bar. The results show that the adsorption of CD4 in the porous silica matrix is scale dependent. The pore space of the silica aerogel is fully accessible to the invading gas, which quickly equilibrates with the external pressure and shows no condensation on the sub-nanometre scale. In the 2.5-50 nm pore size region a classical two-phase adsorption behaviour is observed. The structure of the aerogel returns to its original state after the CD4 pressure has been released.

地质构造为气体(包括二氧化碳、氢气和碳氢化合物)的长期和短期储存提供了良好的环境,这种环境由岩石特有的小尺度孔隙结构控制。本研究利用透射电子显微镜、X 射线衍射以及小角和超小角中子散射,在压力高达 1000 巴的条件下,以氚代甲烷(CD4)为示踪剂,研究了高孔隙二氧化硅气凝胶(天然岩石的合成替代物)的纳米级结构和气体吸收情况。结果表明,CD4 在多孔二氧化硅基质中的吸附与尺度有关。侵入的气体可以完全进入二氧化硅气凝胶的孔隙空间,并迅速与外部压力达到平衡,在亚纳米尺度上不会出现冷凝现象。在孔径为 2.5-50 纳米的区域,可以观察到典型的两相吸附行为。CD4 压力释放后,气凝胶的结构又恢复到原来的状态。
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引用次数: 0
Ptychographic phase retrieval via a deep-learning-assisted iterative algorithm. 通过深度学习辅助迭代算法进行分层相位检索。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-08-19 eCollection Date: 2024-10-01 DOI: 10.1107/S1600576724006897
Koki Yamada, Natsuki Akaishi, Kohei Yatabe, Yuki Takayama

Ptychography is a powerful computational imaging technique with microscopic imaging capability and adaptability to various specimens. To obtain an imaging result, it requires a phase-retrieval algorithm whose performance directly determines the imaging quality. Recently, deep neural network (DNN)-based phase retrieval has been proposed to improve the imaging quality from the ordinary model-based iterative algorithms. However, the DNN-based methods have some limitations because of the sensitivity to changes in experimental conditions and the difficulty of collecting enough measured specimen images for training the DNN. To overcome these limitations, a ptychographic phase-retrieval algorithm that combines model-based and DNN-based approaches is proposed. This method exploits a DNN-based denoiser to assist an iterative algorithm like ePIE in finding better reconstruction images. This combination of DNN and iterative algorithms allows the measurement model to be explicitly incorporated into the DNN-based approach, improving its robustness to changes in experimental conditions. Furthermore, to circumvent the difficulty of collecting the training data, it is proposed that the DNN-based denoiser be trained without using actual measured specimen images but using a formula-driven supervised approach that systemically generates synthetic images. In experiments using simulation based on a hard X-ray ptychographic measurement system, the imaging capability of the proposed method was evaluated by comparing it with ePIE and rPIE. These results demonstrated that the proposed method was able to reconstruct higher-spatial-resolution images with half the number of iterations required by ePIE and rPIE, even for data with low illumination intensity. Also, the proposed method was shown to be robust to its hyperparameters. In addition, the proposed method was applied to ptychographic datasets of a Simens star chart and ink toner particles measured at SPring-8 BL24XU, which confirmed that it can successfully reconstruct images from measurement scans with a lower overlap ratio of the illumination regions than is required by ePIE and rPIE.

层析成像技术是一种功能强大的计算成像技术,具有显微成像能力和对各种标本的适应性。要获得成像结果,需要一种相位检索算法,其性能直接决定了成像质量。最近,有人提出了基于深度神经网络(DNN)的相位检索,以改善基于普通模型的迭代算法的成像质量。然而,基于 DNN 的方法有一些局限性,因为它对实验条件的变化很敏感,而且很难收集到足够的测量标本图像来训练 DNN。为了克服这些局限性,我们提出了一种将基于模型和基于 DNN 的方法相结合的分层相位检索算法。该方法利用基于 DNN 的去噪器来帮助 ePIE 等迭代算法找到更好的重建图像。这种 DNN 与迭代算法的结合使测量模型可以明确地纳入基于 DNN 的方法中,从而提高其对实验条件变化的鲁棒性。此外,为了避免收集训练数据的困难,建议不使用实际测量的标本图像,而是使用公式驱动的监督方法来系统地生成合成图像,从而训练基于 DNN 的去噪器。在基于硬 X 射线层析成像测量系统的模拟实验中,通过与 ePIE 和 rPIE 比较,评估了所提方法的成像能力。这些结果表明,所提出的方法能够重建更高的空间分辨率图像,而所需的迭代次数仅为 ePIE 和 rPIE 的一半,即使是低照度数据也是如此。而且,所提出的方法对其超参数具有鲁棒性。此外,该方法还被应用于在 SPring-8 BL24XU 上测量的 Simens 星图和墨粉颗粒的双色图像数据集,结果表明,该方法可以成功地从测量扫描中重建图像,且照明区域的重叠率低于 ePIE 和 rPIE 的要求。
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引用次数: 0
RMCProfile7: reverse Monte Carlo for multiphase systems. RMCProfile7:多相系统的反向蒙特卡罗。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-07-31 eCollection Date: 2024-08-01 DOI: 10.1107/S1600576724004175
Wojciech A Sławiński, Christopher J Kerr, Yuanpeng Zhang, Helen Y Playford, Martin T Dove, Anthony E Phillips, Matthew G Tucker

This work introduces a completely rewritten version of the program RMCProfile (version 7), big-box, reverse Monte Carlo modelling software for analysis of total scattering data. The major new feature of RMCProfile7 is the ability to refine multiple phases simultaneously, which is relevant for many current research areas such as energy materials, catalysis and engineering. Other new features include improved support for molecular potentials and rigid-body refinements, as well as multiple different data sets. An empirical resolution correction and calculation of the pair distribution function as a back-Fourier transform are now also available. RMCProfile7 is freely available for download at https://rmcprofile.ornl.gov/.

这项工作介绍了一个完全重写版本的程序 RMCProfile(第 7 版),这是一个用于分析全散射数据的大型反向蒙特卡罗建模软件。RMCProfile7 的主要新功能是能够同时细化多个相,这与当前的许多研究领域(如能源材料、催化和工程)息息相关。其他新功能包括改进了对分子势和刚体细化以及多个不同数据集的支持。现在还提供了经验分辨率校正和计算对分布函数的反傅里叶变换。RMCProfile7 可在 https://rmcprofile.ornl.gov/ 免费下载。
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引用次数: 0
On the feasibility of time-resolved X-ray powder diffraction of macromolecules using laser-driven ultrafast X-ray sources. 利用激光驱动超快 X 射线源对大分子进行时间分辨 X 射线粉末衍射的可行性。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-07-29 eCollection Date: 2024-08-01 DOI: 10.1107/S1600576724005028
Krishna Prasad Khakurel, Gabriel Žoldák, Borislav Angelov, Jakob Andreasson

With the emergence of ultrafast X-ray sources, interest in following fast processes in small molecules and macromolecules has increased. Most of the current research into ultrafast structural dynamics of macromolecules uses X-ray free-electron lasers. In parallel, small-scale laboratory-based laser-driven ultrafast X-ray sources are emerging. Continuous development of these sources is underway, and as a result many exciting applications are being reported. However, because of their low flux, such sources are not commonly used to study the structural dynamics of macromolecules. This article examines the feasibility of time-resolved powder diffraction of macromolecular microcrystals using a laboratory-scale laser-driven ultrafast X-ray source.

随着超快 X 射线源的出现,人们对跟踪小分子和大分子中快速过程的兴趣与日俱增。目前对大分子超快结构动力学的研究大多使用 X 射线自由电子激光器。与此同时,基于实验室的小型激光驱动超快 X 射线源也在不断涌现。这些光源正在不断开发中,因此许多令人兴奋的应用也被报道出来。然而,由于其通量较低,这类光源并不常用于研究大分子结构动力学。本文探讨了使用实验室规模的激光驱动超快 X 射线源对大分子微晶体进行时间分辨粉末衍射的可行性。
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引用次数: 0
Operando pair distribution function analysis of nanocrystalline functional materials: the case of TiO2-bronze nanocrystals in Li-ion battery electrodes. 纳米晶体功能材料的操作数对分布函数分析:锂离子电池电极中的 TiO2-青铜纳米晶体。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-07-29 eCollection Date: 2024-08-01 DOI: 10.1107/S1600576724005624
Martin A Karlsen, Jonas Billet, Songsheng Tao, Isabel Van Driessche, Simon J L Billinge, Dorthe B Ravnsbæk

Structural modelling of operando pair distribution function (PDF) data of complex functional materials can be highly challenging. To aid the understanding of complex operando PDF data, this article demonstrates a toolbox for PDF analysis. The tools include denoising using principal component analysis together with the structureMining, similarityMapping and nmfMapping apps available through the online service 'PDF in the cloud' (PDFitc, https://pdfitc.org/). The toolbox is used for both ex situ and operando PDF data for 3 nm TiO2-bronze nanocrystals, which function as the active electrode material in a Li-ion battery. The tools enable structural modelling of the ex situ and operando PDF data, revealing two pristine TiO2 phases (bronze and anatase) and two lithiated Li x TiO2 phases (lithiated versions of bronze and anatase), and the phase evolution during galvanostatic cycling is characterized.

对复杂功能材料的操作数对分布函数(PDF)数据进行结构建模极具挑战性。为了帮助理解复杂的操作数对分布函数数据,本文展示了一个 PDF 分析工具箱。工具包括利用主成分分析法进行去噪,以及通过在线服务 "云中的 PDF"(PDFitc,https://pdfitc.org/)提供的 structureMining、similarityMapping 和 nmfMapping 应用程序。该工具箱适用于 3 nm TiO2-青铜纳米晶体的原位和操作 PDF 数据,该晶体是锂离子电池的活性电极材料。该工具可对原位和运行状态下的 PDF 数据进行结构建模,揭示出两种原始 TiO2 相(青铜相和锐钛矿相)和两种锂化 Li x TiO2 相(青铜相和锐钛矿相的锂化版本),并对电静力循环过程中的相演化进行表征。
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引用次数: 0
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Journal of Applied Crystallography
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