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On the dependence of creep-induced dislocation configurations on crystallographic orientation in pure Al and Al-Mg. 纯Al和Al- mg中蠕变诱发位错构型与晶体取向的关系。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1107/S1600576723003771
Ricardo Fernández, Gizo Bokuchava, Giovanni Bruno, Itziar Serrano-Muñoz, Gaspar González-Doncel

The peak broadening in neutron diffraction experiments on tensile specimens of pure Al (99.8%) and an Al-Mg alloy pre-deformed at different creep strains is analysed. These results are combined with the kernel angular misorientation of electron backscatter diffraction data from the creep-deformed microstructures. It is found that differently oriented grains possess different microstrains. These microstrains vary with creep strain in pure Al, but not in the Al-Mg alloy. It is proposed that this behaviour can explain the power-law breakdown in pure Al and the large creep strain observed in Al-Mg. The present findings further corroborate a description of the creep-induced dislocation structure as a fractal, predicated on previous work.

分析了纯铝(99.8%)和预变形铝镁合金在不同蠕变应变下的拉伸试样的中子衍射峰展宽现象。这些结果与蠕变微结构的电子背散射衍射数据的核角取向错误相结合。发现不同取向的晶粒具有不同的微应变。在纯Al中,这些微应变随蠕变应变而变化,而在Al- mg合金中则没有。提出这种行为可以解释纯Al中的幂律击穿和Al- mg中观察到的大蠕变应变。目前的研究结果进一步证实了蠕变引起的位错结构作为分形的描述,基于以前的工作。
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引用次数: 0
Three-phase material mapping with incomplete X-ray diffraction spectral information. 不完全x射线衍射光谱信息的三相材料映射。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1107/S160057672300331X
Xuyang Chang, Karine Lavernhe-Taillard, Stéphane Roux, Olivier Hubert

An equiatomic nickel-titanium shape-memory alloy specimen subjected to a uniaxial tensile load undergoes a two-step phase transformation under stress, from austenite (A) to a rhombohedral phase (R) and further to martensite (M) variants. The pseudo-elasticity that goes accompanies the phase transformation induces spatial inhomogeneity. To unravel the spatial distribution of the phases, in situ X-ray diffraction analyses are performed while the sample is under tensile load. However, the diffraction spectra of the R phase, as well as the extent of potential martensite detwinning, are not known. A novel algorithm, based on a proper orthogonal decomposition and incorporating inequality constraints, is proposed in order to map out the different phases and simultaneously yield the missing diffraction spectral information. An experimental case study illustrates the methodology.

在单轴拉伸载荷作用下,等原子镍钛形状记忆合金试样在应力作用下经历两步相变,从奥氏体(a)到菱形体(R),再到马氏体(M)。伴随相变而来的伪弹性引起空间不均匀性。为了揭示相的空间分布,在试样处于拉伸载荷下进行了原位x射线衍射分析。然而,R相的衍射谱以及潜在的马氏体孪晶的程度是未知的。提出了一种基于适当的正交分解并结合不等式约束的新算法,以绘制出不同的相位并同时得到缺失的衍射光谱信息。一个实验案例研究说明了该方法。
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引用次数: 0
A reactor for time-resolved X-ray studies of nucleation and growth during solvothermal synthesis. 用于溶剂热合成过程中成核和生长的时间分辨x射线研究的反应器。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1107/S1600576723002339
Martin Roelsgaard, Magnus Kløve, Rasmus Christensen, Andreas D Bertelsen, Nils L N Broge, Innokenty Kantor, Daniel Risskov Sørensen, Ann-Christin Dippel, Soham Banerjee, Martin V Zimmermann, Philipp Glaevecke, Olof Gutowski, Mads Ry Vogel Jørgensen, Bo Brummerstedt Iversen

Understanding the nucleation and growth mechanisms of nanocrystals under hydro- and solvothermal conditions is key to tailoring functional nanomaterials. High-energy and high-flux synchrotron radiation is ideal for characterization by powder X-ray diffraction and X-ray total scattering in real time. Different versions of batch-type cell reactors have been employed in this work, exploiting the robustness of polyimide-coated fused quartz tubes with an inner diameter of 0.7 mm, as they can withstand pressures up to 250 bar and temperatures up to 723 K for several hours. Reported here are recent developments of the in situ setups available for general users on the P21.1 beamline at PETRA III and the DanMAX beamline at MAX IV to study nucleation and growth phenomena in solvothermal synthesis. It is shown that data suitable for both reciprocal-space Rietveld refinement and direct-space pair distribution function refinement can be obtained on a timescale of 4 ms.

了解纳米晶体在水热和溶剂热条件下的成核和生长机制是定制功能纳米材料的关键。高能和高通量同步辐射是粉末x射线衍射和x射线全散射实时表征的理想选择。不同版本的间歇式电池反应器被用于这项工作,利用聚酰亚胺涂层熔融石英管的坚固性,内径为0.7毫米,因为它们可以承受高达250巴的压力和高达723 K的温度几个小时。这里报告了PETRA III的P21.1束线和MAX IV的DanMAX束线上可供一般用户使用的原位装置的最新进展,用于研究溶剂热合成中的成核和生长现象。结果表明,在4 ms的时间尺度上,可以得到适合于往向空间Rietveld细化和直接空间对分布函数细化的数据。
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引用次数: 0
Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography 混合和挤出:高粘度样品注入时间分辨蛋白质晶体学
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-12 DOI: 10.1101/2022.11.23.517685
M. Vakili, Huijong Han, C. Schmidt, A. Wrona, M. Kloos, I. de Diego, K. Dörner, T. Geng, Chan Kim, F. Koua, D. Melo, M. Rappas, A. Round, E. Round, M. Sikorski, J. Valerio, T. Zhou, K. Lorenzen, J. Schulz
Time-resolved crystallography enabled the visualization of protein molecular motion during reaction. While light is commonly used to initiate reactions in time-resolved crystallography, only a small number of proteins can in fact be activated by light. However, many biological reactions can be triggered by the interaction of proteins with ligands. The sample delivery method presented here uses a mix-and-extrude approach based on 3D printed microchannels in conjunction with a micronozzle to study the dynamics of samples in viscous media that can be triggered by diffusive mixing. The device design allows for mixing of ligands and protein crystals in a time window of 2 to 20 seconds. The device characterization using a model system (fluorescence quenching of iq-mEmerald proteins by copper ions) demonstrated that ligand and protein crystals, each within the lipidic cubic phase, can be mixed efficiently. The potential use of this approach for time-resolved membrane protein crystallography to support in the development of new drugs is also discussed. Synopsis 3D printed mixing-HVE devices address time-resolved membrane protein crystallography challenges via compact dual-flow LCP injection.
时间分辨晶体学使蛋白质分子在反应过程中的运动可视化。虽然在时间分辨晶体学中,光通常用于引发反应,但事实上只有少数蛋白质可以被光激活。然而,蛋白质与配体的相互作用可以引发许多生物反应。本文提出的样品递送方法使用基于3D打印微通道的混合和挤出方法,结合微喷嘴,研究扩散混合可能引发的粘性介质中样品的动力学。该装置设计允许在2至20秒的时间窗口内混合配体和蛋白质晶体。使用模型系统的器件表征(铜离子对iq-mEmerald蛋白的荧光猝灭)表明,配体和蛋白晶体(均在脂质立方相中)可以有效混合。还讨论了这种方法在时间分辨膜蛋白晶体学中的潜在用途,以支持新药的开发。简介3D打印混合HVE设备通过紧凑的双流LCP注射解决了时间分辨膜蛋白晶体学的挑战。
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引用次数: 1
An inclined detector geometry for improved X-ray total scattering measurements. 用于改进x射线总散射测量的倾斜探测器几何形状。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-01 DOI: 10.1107/S1600576723001747
Nicholas Burns, Aly Rahemtulla, Scott Annett, Beatriz Moreno, Stefan Kycia

X-ray total scattering measurements are implemented using a digital flat-panel area detector in an inclined geometry and compared with the traditional geometry. The traditional geometry is defined here by the incident X-ray beam impinging on and normal to the center-most pixel of a detector. The inclined geometry is defined here by a detector at a pitch angle α, set to 15° in this case, bisected by the vertical scattering plane. The detector is positioned such that the incident X-ray beam strikes the pixels along the bottom edge and 90° scattered X-rays impinge on the pixels along the top edge. The geometric attributes of the inclined geometry translate into multiple benefits, such as an extension of the measurable scattering range to 90°, a 47% increase in the accessible magnitudes of the reciprocal-space vector Q and a leveling of the dynamic range in the measured total scattering pattern. As a result, a sixfold improvement in signal-to-noise ratios is observed at higher scattering angles, enabling up to a 36-fold reduction in acquisition time. Additionally, the extent of applied modification functions is reduced, decreasing the magnitude of termination ripples and improving the real-space resolution of the pair distribution function G(r). Taken all together, these factors indicate that the inclined geometry produces higher quality data than the traditional geometry, usable for simultaneous Rietveld refinement and total scattering studies.

采用倾斜几何形状的数字平板面积探测器实现了x射线总散射测量,并与传统几何形状进行了比较。传统的几何结构在这里被定义为入射x射线束撞击并垂直于探测器最中心的像素。倾斜几何结构在这里由一个俯仰角为α的探测器定义,在这种情况下设置为15°,由垂直散射平面平分。所述探测器的定位使得入射x射线束沿底边缘撞击所述像素,90°散射x射线沿上边缘撞击所述像素。倾斜几何的几何属性转化为多重好处,例如可测量的散射范围扩展到90°,往复空间矢量Q的可达幅度增加47%,以及测量的总散射图的动态范围趋于均匀。因此,在更高的散射角度下,观察到信噪比提高了6倍,使采集时间减少了36倍。此外,减小了应用修正函数的范围,减小了终端波纹的大小,提高了对分布函数G(r)的实空间分辨率。综上所述,这些因素表明倾斜几何比传统几何产生更高质量的数据,可用于同时进行Rietveld细化和总散射研究。
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引用次数: 2
Modelling the structural disorder in trigonal-prismatic coordinated transition metal dichalcogenides. 三角-棱柱配位过渡金属二硫族化合物结构紊乱的模拟。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-01 DOI: 10.1107/S1600576723001589
Federica Ursi, Simone Virga, Candida Pipitone, Alessandra Sanson, Alessandro Longo, Francesco Giannici, Antonino Martorana

Trigonal-prismatic coordinated transition metal dichalcogenides (TMDCs) are formed from stacked (chalcogen)-(transition metal)-(chalcogen) triple layers, where the chemical bond is covalent within the triple layers and van der Waals (vdW) forces are effective between the layers. Bonding is at the origin of the great interest in these compounds, which are used as 2D materials in applications such as catalysis, electronics, photoelectronics, sensors, batteries and thermoelectricity. This paper addresses the issue of modelling the structural disorder in multilayer TMDCs. The structural model takes into account stacking faults, correlated displacement of atoms and average crystallite size/shape, and is assessed by simulation of the X-ray diffraction pattern and fitting to the experimental data relative to a powdered sample of MoS2 exfoliated and restacked via lithiation. From fitting, an average crystallite size of about 50 Å, nearly spherical crystallites and a definite probability of deviation from the fully eclipsed atomic arrangement present in the ordered structure are determined. The increased interlayer distance and correlated intralayer and interlayer atomic displacement are attributed to the presence of lithium intercalated in the vdW gap between triple layers (Li/Mo molar ratio of about 0.06). The model holds for the whole class of trigonal-prismatic coordinated TMDCs, and is suitably flexible to take into account different preparation routes.

三角-棱柱配位过渡金属二硫族化合物(TMDCs)是由(硫)-(过渡金属)-(硫)三层叠加形成的,三层内化学键为共价键,层间范德华力(vdW)有效。这些化合物被用作二维材料,应用于催化、电子、光电子、传感器、电池和热电等领域。本文讨论了多层TMDCs结构失序的建模问题。该结构模型考虑了层错、原子相关位移和平均晶粒尺寸/形状,并通过模拟x射线衍射图和拟合实验数据对经过锂化剥离和重新堆叠的二硫化钼粉末样品进行了评估。通过拟合,确定了晶体的平均尺寸约为50 Å,晶体接近球形,并确定了偏离有序结构中完全重叠原子排列的确定概率。层间距离的增加以及相关的层内和层间原子位移的增加是由于锂嵌入在三层之间的vdW间隙中(Li/Mo摩尔比约为0.06)。该模型适用于所有类型的三角-棱柱协调TMDCs,并具有适当的灵活性,可以考虑不同的制备路线。
{"title":"Modelling the structural disorder in trigonal-prismatic coordinated transition metal dichalcogenides.","authors":"Federica Ursi,&nbsp;Simone Virga,&nbsp;Candida Pipitone,&nbsp;Alessandra Sanson,&nbsp;Alessandro Longo,&nbsp;Francesco Giannici,&nbsp;Antonino Martorana","doi":"10.1107/S1600576723001589","DOIUrl":"https://doi.org/10.1107/S1600576723001589","url":null,"abstract":"<p><p>Trigonal-prismatic coordinated transition metal dichalcogenides (TMDCs) are formed from stacked (chalcogen)-(transition metal)-(chalcogen) triple layers, where the chemical bond is covalent within the triple layers and van der Waals (vdW) forces are effective between the layers. Bonding is at the origin of the great interest in these compounds, which are used as 2D materials in applications such as catalysis, electronics, photoelectronics, sensors, batteries and thermoelectricity. This paper addresses the issue of modelling the structural disorder in multilayer TMDCs. The structural model takes into account stacking faults, correlated displacement of atoms and average crystallite size/shape, and is assessed by simulation of the X-ray diffraction pattern and fitting to the experimental data relative to a powdered sample of MoS<sub>2</sub> exfoliated and restacked via lithiation. From fitting, an average crystallite size of about 50 Å, nearly spherical crystallites and a definite probability of deviation from the fully eclipsed atomic arrangement present in the ordered structure are determined. The increased interlayer distance and correlated intralayer and interlayer atomic displacement are attributed to the presence of lithium intercalated in the vdW gap between triple layers (Li/Mo molar ratio of about 0.06). The model holds for the whole class of trigonal-prismatic coordinated TMDCs, and is suitably flexible to take into account different preparation routes.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":null,"pages":null},"PeriodicalIF":6.1,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10077858/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9271762","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
xrd_simulator: 3D X-ray diffraction simulation software supporting 3D polycrystalline microstructure morphology descriptions. xrd_simulator: 3D x射线衍射模拟软件,支持3D多晶微观结构形态描述。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-02-01 DOI: 10.1107/S1600576722011001
Axel Henningsson, Stephen A Hall

An open source Python package named xrd_simulator, capable of simulating geometrical interactions between a monochromatic X-ray beam and a polycrystalline microstructure, is described and demonstrated. The software can simulate arbitrary intragranular lattice variations of single crystals embedded within a multiphase 3D aggregate by making use of a tetrahedral mesh representation where each element holds an independent lattice. By approximating the X-ray beam as an arbitrary convex polyhedral region in space and letting the sample be moved continuously through arbitrary rigid motions, data from standard and non-standard measurement sequences can be simulated. This implementation is made possible through analytical solutions to a modified, time-dependent version of the Laue equations. The software, which primarily targets three-dimensional X-ray diffraction microscopy (high-energy X-ray diffraction microscopy) type experiments, enables the numerical exploration of which sample quantities can and cannot be reconstructed for a given acquisition scheme. Similarly, xrd_simulator targets investigations of different measurement sequences in relation to optimizing both experimental run times and sampling.

描述并演示了一个名为xrd_simulator的开源Python包,它能够模拟单色x射线束和多晶微观结构之间的几何相互作用。该软件可以通过使用四面体网格表示来模拟嵌入多相3D聚集体中的单晶的任意颗粒内晶格变化,其中每个元素都拥有一个独立的晶格。通过将x射线束近似为空间中的任意凸多面体区域,并让样品通过任意刚性运动连续移动,可以模拟标准和非标准测量序列的数据。这种实现是通过对劳厄方程的修改后的时变版本的解析解来实现的。该软件主要针对三维x射线衍射显微镜(高能x射线衍射显微镜)类型的实验,可以对给定的采集方案中哪些样品数量可以重建,哪些不能重建进行数值探索。同样,xrd_simulator的目标是研究不同的测量序列,以优化实验运行时间和采样。
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引用次数: 1
Kinematic scattering by nanocrystals. 纳米晶体的运动学散射。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-02-01 DOI: 10.1107/S160057672201069X
Olivier Thomas, Ismail Cevdet Noyan

Various formulations are compared which describe diffraction from ultra-thin single-crystal films in the symmetric scattering configuration, showing that, for this thickness range, several implicit assumptions in these formulations are no longer satisfied. Consequently, the position, integrated intensity and integral breadth of a diffraction peak cannot be related to the lattice spacing of the material or the number of unit cells along the diffraction vector using traditional analysis methods. Some simple equations are proposed to obtain the correct values of these parameters for this specific sample/diffraction geometry combination. More generally, the development of rigorous formalisms for analyzing diffraction from nanocrystals is proposed.

对描述对称散射结构下超薄单晶薄膜衍射的各种公式进行了比较,结果表明,对于这个厚度范围,这些公式中的几个隐含假设不再满足。因此,使用传统的分析方法,衍射峰的位置、积分强度和积分宽度不能与材料的晶格间距或沿衍射矢量的单位胞数相关。针对这种特殊的样品/衍射几何组合,提出了一些简单的方程来计算这些参数的正确值。更一般地说,提出了分析纳米晶体衍射的严格形式的发展。
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引用次数: 0
Specimen-displacement correction for powder X-ray diffraction in Debye-Scherrer geometry with a flat area detector. 用平面探测器对Debye-Scherrer几何中的粉末x射线衍射进行了样品位移校正。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-02-01 DOI: 10.1107/S1600576722011360
Benjamin S Hulbert, Waltraud M Kriven

The effect of small changes in the speci-men-to-detector distance on the unit-cell parameters is examined for synchrotron powder diffraction in Debye-Scherrer (transmission) geometry with a flat area detector. An analytical correction equation is proposed to fix the shift in 2θ values due to speci-men capillary displacement. This equation does not require the use of an internal reference material, is applied during the Rietveld refinement step, and is analogous to the speci-men-displacement correction equations for Bragg-Brentano and curved-detector Debye-Scherrer geometry experiments, but has a different functional form. The 2θ correction equation is compared with another speci-men-displacement correction based on the use of an internal reference material in which new integration and calibration parameters of area-detector images are determined. Example data sets showing the effect of a 3.3 mm speci-men displacement on the unit-cell parameters for 25°C CeO2, including both types of displacement correction, are described. These experiments were performed at powder X-ray diffraction beamlines at the National Synchrotron Light Source II at Brookhaven National Laboratory and the Advanced Photon Source at Argonne National Laboratory.

用平面探测器研究了同步加速器粉末衍射在德拜-谢勒(透射)几何结构下试样到探测器距离的微小变化对单胞参数的影响。提出了一种解析修正方程来修正由于毛细管位移引起的2θ值的偏移。该方程不需要使用内部参考物质,在Rietveld细化步骤中应用,类似于Bragg-Brentano和弯曲探测器Debye-Scherrer几何实验的试样位移校正方程,但具有不同的函数形式。将2θ校正方程与另一种基于内参比材料的试样位移校正方程进行了比较,该内参比材料确定了区域探测器图像的新的积分和标定参数。示例数据集显示了3.3 mm的特定位移对25°C CeO2的单位胞参数的影响,包括两种类型的位移校正。这些实验是在布鲁克海文国家实验室的国家同步加速器光源II和阿贡国家实验室的先进光子源的粉末x射线衍射光束线上进行的。
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引用次数: 2
Reconstruction algorithms for grain mapping by laboratory X-ray diffraction contrast tomography. 通过实验室 X 射线衍射对比断层扫描绘制晶粒图的重建算法。
IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 DOI: 10.1107/S1600576722010214
Haixing Fang, Wolfgang Ludwig, Pierre Lhuissier

X-ray-based non-destructive 3D grain mapping techniques are well established at synchrotron facilities. To facilitate everyday access to grain mapping instruments, laboratory diffraction contrast tomography (LabDCT), using a laboratory-based conical polychromatic X-ray beam, has been developed and commercialized. Yet the currently available LabDCT grain reconstruction methods are either ill-suited for handling a large number of grains or require a commercial licence bound to a specific instrument. To promote the availability of LabDCT, grain reconstruction methods have been developed with multiple reconstruction algorithms based on both forward and back calculations. The different algorithms are presented in detail and their efficient implementation using parallel computing is described. The performance of different reconstruction methods is assessed on synthetic data. The code to implement all the described algorithms has been made publicly accessible with the intention of fostering the development of grain mapping techniques on widely available laboratory instruments.

基于 X 射线的非破坏性三维晶粒测绘技术已在同步加速器设施中得到广泛应用。为了方便人们日常使用晶粒测绘仪器,利用实验室锥形多色 X 射线束的实验室衍射对比层析成像技术(LabDCT)已经开发出来并实现了商业化。然而,目前可用的 LabDCT 晶粒重建方法要么不适合处理大量晶粒,要么需要与特定仪器绑定的商业许可。为了提高 LabDCT 的可用性,我们开发了基于正向和反向计算的多种重建算法的谷物重建方法。本文详细介绍了不同的算法,并介绍了利用并行计算有效实现这些算法的方法。在合成数据上对不同重建方法的性能进行了评估。实现所有所述算法的代码已经公开,目的是在广泛可用的实验室仪器上促进谷物绘图技术的发展。
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引用次数: 0
期刊
Journal of Applied Crystallography
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