Pub Date : 2024-10-25DOI: 10.1021/jacs.4c0828210.1021/jacs.4c08282
Piyush Sharma, Sneha Thomas, Mahika Nair and Ananth Govind Rajan*,
The synthesis of nanoporous two-dimensional (2D) materials has revolutionized fields such as membrane separations, DNA sequencing, and osmotic power harvesting. Nanopores in 2D materials significantly modulate their optoelectronic, magnetic, and barrier properties. However, the large number of possible nanopore isomers makes their study onerous, while the lack of machine-learnable representations stymies progress toward structure–property relationships. Here, we develop a language for nanopores in 2D materials, called STring Representation Of Nanopore Geometry (STRONG), that opens the field of 2D nanopore informatics. We show that STRONGs are naturally suited for machine learning via recurrent neural networks, predicting formation energies/times of arbitrary nanopores and transport barriers for CO2, N2, and O2 gas molecules, enabling structure–property relationships. The machine learning models enable the discovery of specific nanopore topologies to separate CO2/N2, O2/CO2, and O2/N2 gas mixtures with high selectivity ratios. We also enable the rapid enumeration of unique configurations of stable, functionalized nanopores in 2D materials via STRONGs, allowing systematic searching of the vast chemical space of nanopores. Using the STRONGs approach, we find that a mix of hydrogen and quinone functionalization results in the most stable functionalized nanopore configuration in graphene, a discovery made feasible by expedited chemical space exploration. Additionally, we also unravel the STRONGs approach as ∼1000 times faster than graph theory algorithms to distinguish nanopore shapes. These advances in the language-based representation of 2D nanopores will accelerate the tailored design of nanoporous materials.
{"title":"Machine Learnable Language for the Chemical Space of Nanopores Enables Structure–Property Relationships in Nanoporous 2D Materials","authors":"Piyush Sharma, Sneha Thomas, Mahika Nair and Ananth Govind Rajan*, ","doi":"10.1021/jacs.4c0828210.1021/jacs.4c08282","DOIUrl":"https://doi.org/10.1021/jacs.4c08282https://doi.org/10.1021/jacs.4c08282","url":null,"abstract":"<p >The synthesis of nanoporous two-dimensional (2D) materials has revolutionized fields such as membrane separations, DNA sequencing, and osmotic power harvesting. Nanopores in 2D materials significantly modulate their optoelectronic, magnetic, and barrier properties. However, the large number of possible nanopore isomers makes their study onerous, while the lack of machine-learnable representations stymies progress toward structure–property relationships. Here, we develop a language for nanopores in 2D materials, called STring Representation Of Nanopore Geometry (STRONG), that opens the field of 2D nanopore informatics. We show that STRONGs are naturally suited for machine learning via recurrent neural networks, predicting formation energies/times of arbitrary nanopores and transport barriers for CO<sub>2</sub>, N<sub>2</sub>, and O<sub>2</sub> gas molecules, enabling structure–property relationships. The machine learning models enable the discovery of specific nanopore topologies to separate CO<sub>2</sub>/N<sub>2</sub>, O<sub>2</sub>/CO<sub>2</sub>, and O<sub>2</sub>/N<sub>2</sub> gas mixtures with high selectivity ratios. We also enable the rapid enumeration of unique configurations of stable, functionalized nanopores in 2D materials via STRONGs, allowing systematic searching of the vast chemical space of nanopores. Using the STRONGs approach, we find that a mix of hydrogen and quinone functionalization results in the most stable functionalized nanopore configuration in graphene, a discovery made feasible by expedited chemical space exploration. Additionally, we also unravel the STRONGs approach as ∼1000 times faster than graph theory algorithms to distinguish nanopore shapes. These advances in the language-based representation of 2D nanopores will accelerate the tailored design of nanoporous materials.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30126–30138 30126–30138"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25DOI: 10.1021/jacs.4c0953110.1021/jacs.4c09531
Anthony R. Perez, Adekunle Adewole, Daphney Sihwa, Michael E. Colvin and Andrea D. Merg*,
Owing to their synthetic accessibility and protein-mimetic features, peptides represent an attractive biomolecular building block for the fabrication of artificial biomimetic materials with emergent properties and functions. Here, we expand the peptide building block design space through unveiling the design, synthesis, and characterization of novel, multivalent peptide macrocycles (96mers), termed coiled coil peptide tiles (CCPTs). CCPTs comprise multiple orthogonal coiled coil peptide domains that are separated by flexible linkers. The constraints, imposed by cyclization, confer CCPTs with the ability to direct programmable, multidirectional interactions between coiled coil-forming “edge” domains of CCPTs and their free peptide binding partners. These fully synthetic constructs are assembled using a convergent synthetic strategy via a combination of native chemical ligation and Sortase A-mediated cyclization. Circular dichroism (CD) studies reveal the increased helical stability associated with cyclization and subsequent coiled coil formation along the CCPT edges. Size-exclusion chromatography (SEC), analytical high-performance liquid chromatography (HPLC), and fluorescence quenching assays provide a comprehensive biophysical characterization of various assembled CCPT complexes and confirm the orthogonal colocalization between coiled coil domains within CCPTs and their designed on-target free peptide partners. Lastly, we employ molecular dynamics (MD) simulations, which provide molecular-level insights into experimental results, as a supporting method for understanding the structural dynamics of CCPTs and their complexes. MD analysis of the simulated CCPT architectures reveals the rigidification and expansion of CCPTs upon complexation, i.e., coiled coil formation with their designed binding partners, and provides insights for guiding the designs of future generations of CCPTs. The addition of CCPTs into the repertoire of coiled coil-based building blocks has the potential for expanding the coiled coil assembly landscape by unlocking new topologies having designable intermolecular interfaces.
{"title":"Coiled Coil Peptide Tiles (CCPTs): Expanding the Peptide Building Block Design with Multivalent Peptide Macrocycles","authors":"Anthony R. Perez, Adekunle Adewole, Daphney Sihwa, Michael E. Colvin and Andrea D. Merg*, ","doi":"10.1021/jacs.4c0953110.1021/jacs.4c09531","DOIUrl":"https://doi.org/10.1021/jacs.4c09531https://doi.org/10.1021/jacs.4c09531","url":null,"abstract":"<p >Owing to their synthetic accessibility and protein-mimetic features, peptides represent an attractive biomolecular building block for the fabrication of artificial biomimetic materials with emergent properties and functions. Here, we expand the peptide building block design space through unveiling the design, synthesis, and characterization of novel, multivalent peptide macrocycles (96mers), termed coiled coil peptide tiles (CCPTs). CCPTs comprise multiple orthogonal coiled coil peptide domains that are separated by flexible linkers. The constraints, imposed by cyclization, confer CCPTs with the ability to direct programmable, multidirectional interactions between coiled coil-forming “edge” domains of CCPTs and their free peptide binding partners. These fully synthetic constructs are assembled using a convergent synthetic strategy via a combination of native chemical ligation and Sortase A-mediated cyclization. Circular dichroism (CD) studies reveal the increased helical stability associated with cyclization and subsequent coiled coil formation along the CCPT edges. Size-exclusion chromatography (SEC), analytical high-performance liquid chromatography (HPLC), and fluorescence quenching assays provide a comprehensive biophysical characterization of various assembled CCPT complexes and confirm the orthogonal colocalization between coiled coil domains within CCPTs and their designed on-target free peptide partners. Lastly, we employ molecular dynamics (MD) simulations, which provide molecular-level insights into experimental results, as a supporting method for understanding the structural dynamics of CCPTs and their complexes. MD analysis of the simulated CCPT architectures reveals the rigidification and expansion of CCPTs upon complexation, i.e., coiled coil formation with their designed binding partners, and provides insights for guiding the designs of future generations of CCPTs. The addition of CCPTs into the repertoire of coiled coil-based building blocks has the potential for expanding the coiled coil assembly landscape by unlocking new topologies having designable intermolecular interfaces.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30252–30261 30252–30261"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/jacs.4c09531","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585828","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25DOI: 10.1021/jacs.4c1008610.1021/jacs.4c10086
Florian Deißenbeck, Sudarsan Surendralal, Mira Todorova, Stefan Wippermann* and Jörg Neugebauer,
Aqueous metal corrosion is a major economic concern in modern society. A phenomenon that has puzzled generations of scientists in this field is the so-called anomalous hydrogen evolution: the violent dissolution of magnesium under electron-deficient (anodic) conditions, accompanied by strong hydrogen evolution and a key mechanism hampering Mg technology. Experimental studies have indicated the presence of univalent Mg+ in solution, but these findings have been largely ignored because they defy our common chemical understanding and evaded direct experimental observation. Using recent advances in the ab initio description of solid–liquid electrochemical interfaces under controlled potential conditions, we describe the full reaction path of Mg atom dissolution from a kinked Mg surface under anodic conditions. Our study reveals the formation of a solvated [Mg2+(OH)−]+ ion complex, challenging the conventional assumption of Mg2+ ion formation. This insight provides an intuitive explanation for the postulated presence of (Coulombically) univalent Mg+ ions, and the absence of protective oxide/hydroxide layers normally formed under anodic/oxidizing conditions. The discovery of this unexpected and unconventional reaction mechanism is crucial for identifying new strategies for corrosion prevention and can be transferred to other metals.
水金属腐蚀是现代社会的一个主要经济问题。在这一领域困惑了几代科学家的一个现象就是所谓的反常氢演化:镁在缺电子(阳极)条件下的剧烈溶解,伴随着强烈的氢演化,这是阻碍镁技术发展的一个关键机制。实验研究表明溶液中存在单价 Mg+,但这些发现在很大程度上被忽视了,因为它们违背了我们对化学的普遍理解,也躲避了直接的实验观察。我们利用最近在受控电位条件下对固液电化学界面进行ab initio 描述方面取得的进展,描述了在阳极条件下镁原子从扭结镁表面溶解的全部反应路径。我们的研究揭示了溶解的[Mg2+(OH)-]+ 离子复合物的形成过程,对传统的 Mg2+ 离子形成假设提出了质疑。这一发现为假定的(库仑)单价 Mg+ 离子的存在以及通常在阳极/氧化条件下形成的氧化物/氢氧化物保护层的缺失提供了直观的解释。这种意想不到的非传统反应机制的发现对于确定新的防腐蚀策略至关重要,并可应用于其他金属。
{"title":"Revealing the Reaction Pathway of Anodic Hydrogen Evolution at Magnesium Surfaces in Aqueous Electrolytes","authors":"Florian Deißenbeck, Sudarsan Surendralal, Mira Todorova, Stefan Wippermann* and Jörg Neugebauer, ","doi":"10.1021/jacs.4c1008610.1021/jacs.4c10086","DOIUrl":"https://doi.org/10.1021/jacs.4c10086https://doi.org/10.1021/jacs.4c10086","url":null,"abstract":"<p >Aqueous metal corrosion is a major economic concern in modern society. A phenomenon that has puzzled generations of scientists in this field is the so-called anomalous hydrogen evolution: the violent dissolution of magnesium under electron-deficient (anodic) conditions, accompanied by strong hydrogen evolution and a key mechanism hampering Mg technology. Experimental studies have indicated the presence of univalent Mg<sup>+</sup> in solution, but these findings have been largely ignored because they defy our common chemical understanding and evaded direct experimental observation. Using recent advances in the <i>ab initio</i> description of solid–liquid electrochemical interfaces under controlled potential conditions, we describe the full reaction path of Mg atom dissolution from a kinked Mg surface under anodic conditions. Our study reveals the formation of a solvated [Mg<sup>2+</sup>(OH)<sup>−</sup>]<sup>+</sup> ion complex, challenging the conventional assumption of Mg<sup>2+</sup> ion formation. This insight provides an intuitive explanation for the postulated presence of (Coulombically) univalent Mg<sup>+</sup> ions, and the absence of protective oxide/hydroxide layers normally formed under anodic/oxidizing conditions. The discovery of this unexpected and unconventional reaction mechanism is crucial for identifying new strategies for corrosion prevention and can be transferred to other metals.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30314–30319 30314–30319"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/jacs.4c10086","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25DOI: 10.1021/jacs.4c1025210.1021/jacs.4c10252
Hou-Ming Xu, Chao Gu, Gang Wang, Pengfei Nan, Jian-Ding Zhang, Lei Shi, Shi-Kui Han*, Binghui Ge, Yang-Gang Wang, Jun Li and Shu-Hong Yu*,
The potential universality of chemical transformation principles makes it a powerful tool for nanocrystal (NC) synthesis. An example is the nanoscale Kirkendall effect, which serves as a guideline for the construction of hollow structures with different properties compared to their solid counterparts. However, even this general process is still limited in material scope, structural complexity, and, in particular, transformations beyond the conventional solid-to-hollow process. We demonstrate in this work an extension of the Kirkendall effect that drives reversible structural and phase transformations between metastable metal chalcogenides (MCs) and metal phosphides (MPs). Starting from Ni3S4/Cu1.94S NCs as the initial frameworks, ligand-regulated sequential extractions and diffusion of host/guest (S2–/P3–) anions between Ni3S4/Cu1.94S and Ni2P/Cu3P phases enable solid-to-hollow-to-solid structural motif evolution while retaining the overall morphology of the NC. An in-depth mechanistic study reveals that the transformation between metastable MCs and MPs occurs through a combination of ligand-dependent kinetic control and anion mixing-induced thermodynamic control. This strategy provides a robust platform for creating a library of reconfigurable NCs with tunable compositions, structures, and interfaces.
{"title":"Kirkendall Effect-Driven Reversible Chemical Transformation for Reconfigurable Nanocrystals","authors":"Hou-Ming Xu, Chao Gu, Gang Wang, Pengfei Nan, Jian-Ding Zhang, Lei Shi, Shi-Kui Han*, Binghui Ge, Yang-Gang Wang, Jun Li and Shu-Hong Yu*, ","doi":"10.1021/jacs.4c1025210.1021/jacs.4c10252","DOIUrl":"https://doi.org/10.1021/jacs.4c10252https://doi.org/10.1021/jacs.4c10252","url":null,"abstract":"<p >The potential universality of chemical transformation principles makes it a powerful tool for nanocrystal (NC) synthesis. An example is the nanoscale Kirkendall effect, which serves as a guideline for the construction of hollow structures with different properties compared to their solid counterparts. However, even this general process is still limited in material scope, structural complexity, and, in particular, transformations beyond the conventional solid-to-hollow process. We demonstrate in this work an extension of the Kirkendall effect that drives reversible structural and phase transformations between metastable metal chalcogenides (MCs) and metal phosphides (MPs). Starting from Ni<sub>3</sub>S<sub>4</sub>/Cu<sub>1.94</sub>S NCs as the initial frameworks, ligand-regulated sequential extractions and diffusion of host/guest (S<sup>2–</sup>/P<sup>3–</sup>) anions between Ni<sub>3</sub>S<sub>4</sub>/Cu<sub>1.94</sub>S and Ni<sub>2</sub>P/Cu<sub>3</sub>P phases enable solid-to-hollow-to-solid structural motif evolution while retaining the overall morphology of the NC. An in-depth mechanistic study reveals that the transformation between metastable MCs and MPs occurs through a combination of ligand-dependent kinetic control and anion mixing-induced thermodynamic control. This strategy provides a robust platform for creating a library of reconfigurable NCs with tunable compositions, structures, and interfaces.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30372–30379 30372–30379"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25DOI: 10.1021/jacs.4c0780610.1021/jacs.4c07806
Sha Tan, Oleg Borodin, Nan Wang, Dean Yen, Conan Weiland and Enyuan Hu*,
Lithium-ion batteries (LIBs) face increasingly stringent demands as their application expands into new areas, including extreme temperatures and fast charging. To meet these demands, the electrolyte should enable fast lithium-ion transport and form stable interphases on electrodes simultaneously. In practice, however, improving one aspect often compromises another. For instance, the trend toward electrolytes forming anion-derived interphases typically reduces transport efficiency due to weak-solvating solvents. We propose that instead of relying on anions to form the interphase, leveraging both solvents and anions to form interphases can potentially lead to a balancing point between robust interphase formation and effective ion transport. Guided by this design principle, 2,2-difluoroethyl ethyl carbonate (DFDEC) was identified as the promising solvent. With the new electrolyte using DFDEC as the major solvent and lithium bis(fluorosulfonyl) imide (LiFSI) as the salt, graphite||LiNi0.8Mn0.1Co0.1O2 (NMC811) full cells are capable of fast charging and demonstrate long-term cycling stability with a cutoff voltage of 4.5 V. Notably, the battery shows a capacity retention of 84.3% after 500 cycles with an average Coulombic efficiency (CE) as high as 99.93%. This new electrolyte also enables stable battery cycling across a wide temperature range (−20 to 60 °C), with excellent capacity retention.
{"title":"Synergistic Anion and Solvent-Derived Interphases Enable Lithium-Ion Batteries under Extreme Conditions","authors":"Sha Tan, Oleg Borodin, Nan Wang, Dean Yen, Conan Weiland and Enyuan Hu*, ","doi":"10.1021/jacs.4c0780610.1021/jacs.4c07806","DOIUrl":"https://doi.org/10.1021/jacs.4c07806https://doi.org/10.1021/jacs.4c07806","url":null,"abstract":"<p >Lithium-ion batteries (LIBs) face increasingly stringent demands as their application expands into new areas, including extreme temperatures and fast charging. To meet these demands, the electrolyte should enable fast lithium-ion transport and form stable interphases on electrodes simultaneously. In practice, however, improving one aspect often compromises another. For instance, the trend toward electrolytes forming anion-derived interphases typically reduces transport efficiency due to weak-solvating solvents. We propose that instead of relying on anions to form the interphase, leveraging both solvents and anions to form interphases can potentially lead to a balancing point between robust interphase formation and effective ion transport. Guided by this design principle, 2,2-difluoroethyl ethyl carbonate (DFDEC) was identified as the promising solvent. With the new electrolyte using DFDEC as the major solvent and lithium bis(fluorosulfonyl) imide (LiFSI) as the salt, graphite||LiNi<sub>0.8</sub>Mn<sub>0.1</sub>Co<sub>0.1</sub>O<sub>2</sub> (NMC811) full cells are capable of fast charging and demonstrate long-term cycling stability with a cutoff voltage of 4.5 V. Notably, the battery shows a capacity retention of 84.3% after 500 cycles with an average Coulombic efficiency (CE) as high as 99.93%. This new electrolyte also enables stable battery cycling across a wide temperature range (−20 to 60 °C), with excellent capacity retention.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30104–30116 30104–30116"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25DOI: 10.1021/jacs.4c1142610.1021/jacs.4c11426
Sourav Pathak, and , Kana M. Sureshan*,
We designed and synthesized an amide-based monomer decorated with furan as the diene unit and maleimide as the dienophile unit at its termini. Single-crystal X-ray diffraction (SCXRD) analysis of its crystal revealed a head-to-tail arrangement of molecules with furan and maleimide groups of neighboring molecules proximally placed in an arrangement suitable for their topochemical Diels–Alder cycloaddition (TDAC) to form a linear polymer. The monomer underwent a spontaneous single-crystal-to-single-crystal (SCSC) polymerization at room temperature, yielding a linear polymer with oxa-bicyclic linkage. SCXRD analysis revealed that the cycloaddition occurred in an exoselective manner, and the absolute stereochemistry of the oxa-bicyclic linkage alternated in successive repeat units, leading to a syndiotactic linear polymer. The polymerization can be accelerated by heating the powder at 120 °C; the topochemical nature of the high-temperature reaction was established by time dependent differential scanning calorimetry (DSC), time-dependent powder X-ray diffraction (PXRD), and UV–visible spectroscopic analysis; the polymer was characterized using solid-state NMR spectroscopy and MALDI-TOF mass spectrometry.
我们设计并合成了一种以呋喃为二烯单元、马来酰亚胺为亲二烯单元的酰胺基单体。对其晶体的单晶 X 射线衍射(SCXRD)分析表明,分子呈头对尾排列,邻近分子的呋喃基团和马来酰亚胺基团以适合它们的拓扑化学狄尔斯-阿尔德环加成(TDAC)的排列方式形成线性聚合物。单体在室温下发生了自发的单晶-单晶(SCSC)聚合反应,生成了具有氧杂双环连接的线性聚合物。SCXRD 分析表明,环化反应是以外选择性方式进行的,在连续的重复单元中,氧杂双环连接的绝对立体化学结构发生了交替,从而产生了一种对位线性聚合物。通过在 120 °C 下加热粉末可加速聚合;通过时间相关差示扫描量热法(DSC)、时间相关粉末 X 射线衍射(PXRD)和紫外可见光谱分析确定了高温反应的拓扑化学性质;使用固态核磁共振光谱和 MALDI-TOF 质谱对聚合物进行了表征。
{"title":"A Syndiotactic Polymer via Spontaneous Exoselective Single-Crystal-To-Single-Crystal Topochemical Diels–Alder Cycloaddition Reaction","authors":"Sourav Pathak, and , Kana M. Sureshan*, ","doi":"10.1021/jacs.4c1142610.1021/jacs.4c11426","DOIUrl":"https://doi.org/10.1021/jacs.4c11426https://doi.org/10.1021/jacs.4c11426","url":null,"abstract":"<p >We designed and synthesized an amide-based monomer decorated with furan as the diene unit and maleimide as the dienophile unit at its termini. Single-crystal X-ray diffraction (SCXRD) analysis of its crystal revealed a head-to-tail arrangement of molecules with furan and maleimide groups of neighboring molecules proximally placed in an arrangement suitable for their topochemical Diels–Alder cycloaddition (TDAC) to form a linear polymer. The monomer underwent a spontaneous single-crystal-to-single-crystal (SCSC) polymerization at room temperature, yielding a linear polymer with oxa-bicyclic linkage. SCXRD analysis revealed that the cycloaddition occurred in an exoselective manner, and the absolute stereochemistry of the oxa-bicyclic linkage alternated in successive repeat units, leading to a syndiotactic linear polymer. The polymerization can be accelerated by heating the powder at 120 °C; the topochemical nature of the high-temperature reaction was established by time dependent differential scanning calorimetry (DSC), time-dependent powder X-ray diffraction (PXRD), and UV–visible spectroscopic analysis; the polymer was characterized using solid-state NMR spectroscopy and MALDI-TOF mass spectrometry.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30495–30501 30495–30501"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585563","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25DOI: 10.1021/jacs.4c1189210.1021/jacs.4c11892
Jiangbo Wu, Zhaoyi Gu, Justin A. Modica, Sijia Chen, Milan Mrksich* and Gregory A. Voth*,
This work describes the use of computational strategies to design megamolecule building blocks for the self-assembly of lattice networks. The megamolecules are prepared by attaching four Cutinase-SnapTag fusion proteins (CS fusions) to a four-armed linker, followed by functionalizing each fusion with a terpyridine linker. This functionality is designed to participate in a metal-mediated self-assembly process to give networks. This article describes a simulation-guided strategy for the design of megamolecules to optimize the peptide linker in the fusion protein to give conformations that are best suited for self-assembly and therefore streamlines the typically time-consuming and labor-intensive experimental process. We designed 11 candidate megamolecules and identified the most promising linker, (EAAAK)2, along with the optimal experimental conditions through a combination of all-atom molecular dynamics, enhanced sampling, and larger-scale coarse-grained molecular dynamics simulations. Our simulation findings were validated and found to be consistent with the experimental results. Significantly, this study offers valuable insight into the self-assembly of megamolecule networks and provides a novel and general strategy for large biomolecular material designs by using systematic bottom-up coarse-grained simulations.
{"title":"Megamolecule Self-Assembly Networks: A Combined Computational and Experimental Design Strategy","authors":"Jiangbo Wu, Zhaoyi Gu, Justin A. Modica, Sijia Chen, Milan Mrksich* and Gregory A. Voth*, ","doi":"10.1021/jacs.4c1189210.1021/jacs.4c11892","DOIUrl":"https://doi.org/10.1021/jacs.4c11892https://doi.org/10.1021/jacs.4c11892","url":null,"abstract":"<p >This work describes the use of computational strategies to design megamolecule building blocks for the self-assembly of lattice networks. The megamolecules are prepared by attaching four Cutinase-SnapTag fusion proteins (CS fusions) to a four-armed linker, followed by functionalizing each fusion with a terpyridine linker. This functionality is designed to participate in a metal-mediated self-assembly process to give networks. This article describes a simulation-guided strategy for the design of megamolecules to optimize the peptide linker in the fusion protein to give conformations that are best suited for self-assembly and therefore streamlines the typically time-consuming and labor-intensive experimental process. We designed 11 candidate megamolecules and identified the most promising linker, (EAAAK)<sub>2</sub>, along with the optimal experimental conditions through a combination of all-atom molecular dynamics, enhanced sampling, and larger-scale coarse-grained molecular dynamics simulations. Our simulation findings were validated and found to be consistent with the experimental results. Significantly, this study offers valuable insight into the self-assembly of megamolecule networks and provides a novel and general strategy for large biomolecular material designs by using systematic bottom-up coarse-grained simulations.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30553–30564 30553–30564"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25DOI: 10.1021/jacs.4c1173810.1021/jacs.4c11738
Anustoop Das, Koyendrila Debnath, Ivy Maria, Subarna Das, Prabir Dutta, Diptikanta Swain, Umesh V. Waghmare and Kanishka Biswas*,
Metal chalcohalides, owing to their higher stability over halides and greater tunability of electronic features over chalcogenides, open new avenues for investigating properties of materials. Complex metal chalcohalides can be a good choice for thermoelectric studies for their halide-like low thermal conductivity and chalcogenide-like high electrical conductivity. Here, we have investigated the thermoelectric properties of n-type Bi13S18Br2 and utilized the concept of Fajans’ polarization to describe the formation of a dimer and explained how it can help achieve high thermoelectric figure of merit (zT) of ∼1.0 at 748 K. This zT value is so far the highest-reported value for pristine metal chalcohalides. The existence of subunit in Bi13S18Br2 is experimentally verified by synchrotron X-ray pair distribution function (X-PDF) analysis. The complex structure of Bi13S18Br2 having a large unit cell exhibits simultaneous dimer-cation rattler (i.e., “twin-rattler”), which decreases the lattice thermal conductivity drastically. We observed evidence of such low-energy rattling vibrations from DFT-calculated eigen mode visualizations of the phonon dispersion. The subvalent nature of accommodates an extra electron in Bi(6pz) orbital, which helps form a weakly dispersed donor band just below the Fermi energy (EF), leading to a significant reduction in band gap (0.77 eV), which is favorable for high thermoelectric performance. Consequently, we obtained a semiconducting nature of n-type Bi13S18Br2 with moderate electrical conductivity, as well as a high Seebeck coefficient. Our investigation presents the importance of fundamental chemistry in thermoelectrics and demonstrates the influence of subvalent twin-rattler in triggering high thermoelectric performance in metal chalcohalides.
与卤化物相比,金属卤化物具有更高的稳定性,与卤化镓相比,其电子特性具有更大的可调性,这为研究材料特性开辟了新的途径。复杂的金属卤化物具有类似卤化物的低热导率和类似霰化物的高导电率,因此是热电研究的良好选择。在此,我们研究了 n 型 Bi13S18Br2 的热电性能,并利用 Fajans 极化概念描述了 Bi24+ 二聚体的形成,解释了它如何有助于在 748 K 时获得 ∼1.0 的高热电功率(zT)。通过同步辐射 X 射线对分布函数(X-PDF)分析,实验验证了 Bi13S18Br2 中 Bi24+ 亚基的存在。具有大单元晶胞的 Bi13S18Br2 复合物结构同时表现出二聚体-阳离子响子(即 "双响子"),这大大降低了晶格热导率。我们从 DFT 计算的声子色散特征模式可视化中观察到了这种低能响振的证据。Bi24+ 的亚价性质在 Bi(6pz) 轨道上容纳了一个额外的电子,这有助于在费米能 (EF) 正下方形成一个弱分散的供体带,导致带隙(0.77 eV)显著减小,有利于实现高热电性能。因此,我们获得了具有适度导电性和高塞贝克系数的 n 型 Bi13S18Br2 半导体。我们的研究显示了基础化学在热电中的重要性,并证明了亚价孪晶在引发金属卤化物高热电性能方面的影响。
{"title":"Influence of Subvalent Twin-Rattler for High n-Type Thermoelectric Performance in Bi13S18Br2 Chalcohalide","authors":"Anustoop Das, Koyendrila Debnath, Ivy Maria, Subarna Das, Prabir Dutta, Diptikanta Swain, Umesh V. Waghmare and Kanishka Biswas*, ","doi":"10.1021/jacs.4c1173810.1021/jacs.4c11738","DOIUrl":"https://doi.org/10.1021/jacs.4c11738https://doi.org/10.1021/jacs.4c11738","url":null,"abstract":"<p >Metal chalcohalides, owing to their higher stability over halides and greater tunability of electronic features over chalcogenides, open new avenues for investigating properties of materials. Complex metal chalcohalides can be a good choice for thermoelectric studies for their halide-like low thermal conductivity and chalcogenide-like high electrical conductivity. Here, we have investigated the thermoelectric properties of <i>n</i>-type Bi<sub>13</sub>S<sub>18</sub>Br<sub>2</sub> and utilized the concept of Fajans’ polarization to describe the formation of a dimer <i></i><math><msubsup><mrow><mi>Bi</mi></mrow><mrow><mn>2</mn></mrow><mrow><mrow><mn>4</mn></mrow><mrow><mo>+</mo></mrow></mrow></msubsup></math> and explained how it can help achieve high thermoelectric figure of merit (zT) of ∼1.0 at 748 K. This zT value is so far the highest-reported value for pristine metal chalcohalides. The existence of <i></i><math><msubsup><mrow><mi>Bi</mi></mrow><mrow><mn>2</mn></mrow><mrow><mrow><mn>4</mn></mrow><mrow><mo>+</mo></mrow></mrow></msubsup></math> subunit in Bi<sub>13</sub>S<sub>18</sub>Br<sub>2</sub> is experimentally verified by synchrotron X-ray pair distribution function (X-PDF) analysis. The complex structure of Bi<sub>13</sub>S<sub>18</sub>Br<sub>2</sub> having a large unit cell exhibits simultaneous dimer-cation rattler (i.e., “twin-rattler”), which decreases the lattice thermal conductivity drastically. We observed evidence of such low-energy rattling vibrations from DFT-calculated eigen mode visualizations of the phonon dispersion. The subvalent nature of <i></i><math><msubsup><mrow><mi>Bi</mi></mrow><mrow><mn>2</mn></mrow><mrow><mrow><mn>4</mn></mrow><mrow><mo>+</mo></mrow></mrow></msubsup></math>accommodates an extra electron in <i>Bi</i>(<i>6p</i><sub><i>z</i></sub>) orbital, which helps form a weakly dispersed donor band just below the Fermi energy (<i>E</i><sub>F</sub>), leading to a significant reduction in band gap (0.77 eV), which is favorable for high thermoelectric performance. Consequently, we obtained a semiconducting nature of <i>n</i>-type Bi<sub>13</sub>S<sub>18</sub>Br<sub>2</sub> with moderate electrical conductivity, as well as a high Seebeck coefficient. Our investigation presents the importance of fundamental chemistry in thermoelectrics and demonstrates the influence of subvalent twin-rattler in triggering high thermoelectric performance in metal chalcohalides.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30518–30528 30518–30528"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25DOI: 10.1021/jacs.4c1232910.1021/jacs.4c12329
Tianyi Zhang, William G. Whitehurst, Matthew V. Pecoraro, Junho Kim, Stefan G. Koenig and Paul J. Chirik*,
Experimental and computational studies have been conducted and established the general principles for enabling redox-neutral C–H activation by iron(II) complexes. The idealized octahedral iron(II) dimethyl complex, (depe)2Fe(CH3)2 (depe = 1,2-bis(diethylphosphino)ethane) promoted the directed, regioselective ortho C(sp2)–H methylation of pivalophenone. The rate of the iron(II)-mediated C(sp2)–H functionalization depended on the lability of L-type phosphine ligands, the spin state of the iron center, and the size of the X-type ligands (halide, hydrocarbyl) in P4FeIIX2 complexes. The C(sp2)–H alkylation reaction proved general among multiple substrates with directing groups including carbonyl, imines and pyridines. Among these, ketones and aldehydes were identified as optimal and were compatible with various steric environments and presence of acidic α-hydrogens. With stronger nitrogen donors, higher barriers for product-forming reductive elimination were observed. The effect of orbital hybridization on the chemoselectivity of C–H activation through a σ-CAM pathway by dn>0 transition metals was also established by studying the stoichiometric reactivity of the differentially substituted (depe)2Fe(Me)R complexes (R = alkyl, aryl), where the Fe–R bond with greater s-character preferentially promoted selective C–H activation. Deuterium labeling and kinetic studies, coupled with computational analysis, supported a pathway involving phosphine dissociation and rate-determining C–H bond activation, leading to the observed products.
{"title":"Redox-Neutral, Iron-Mediated Directed C–H Activation: General Principles and Mechanistic Insights","authors":"Tianyi Zhang, William G. Whitehurst, Matthew V. Pecoraro, Junho Kim, Stefan G. Koenig and Paul J. Chirik*, ","doi":"10.1021/jacs.4c1232910.1021/jacs.4c12329","DOIUrl":"https://doi.org/10.1021/jacs.4c12329https://doi.org/10.1021/jacs.4c12329","url":null,"abstract":"<p >Experimental and computational studies have been conducted and established the general principles for enabling redox-neutral C–H activation by iron(II) complexes. The idealized octahedral iron(II) dimethyl complex, (depe)<sub>2</sub>Fe(CH<sub>3</sub>)<sub>2</sub> (depe = 1,2-bis(diethylphosphino)ethane) promoted the directed, regioselective <i>ortho</i> C(sp<sup>2</sup>)–H methylation of pivalophenone. The rate of the iron(II)-mediated C(sp<sup>2</sup>)–H functionalization depended on the lability of L-type phosphine ligands, the spin state of the iron center, and the size of the X-type ligands (halide, hydrocarbyl) in P<sub>4</sub>Fe<sup>II</sup>X<sub>2</sub> complexes. The C(sp<sup>2</sup>)–H alkylation reaction proved general among multiple substrates with directing groups including carbonyl, imines and pyridines. Among these, ketones and aldehydes were identified as optimal and were compatible with various steric environments and presence of acidic α-hydrogens. With stronger nitrogen donors, higher barriers for product-forming reductive elimination were observed. The effect of orbital hybridization on the chemoselectivity of C–H activation through a σ-CAM pathway by <i>d</i><sup><i>n</i>>0</sup> transition metals was also established by studying the stoichiometric reactivity of the differentially substituted (depe)<sub>2</sub>Fe(Me)R complexes (R = alkyl, aryl), where the Fe–R bond with greater <i>s</i>-character preferentially promoted selective C–H activation. Deuterium labeling and kinetic studies, coupled with computational analysis, supported a pathway involving phosphine dissociation and rate-determining C–H bond activation, leading to the observed products.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30637–30652 30637–30652"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585783","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25DOI: 10.1021/jacs.4c1335910.1021/jacs.4c13359
Chen-Xu Liu, Qian Wang and Jieping Zhu*,
Fluorocyclization of alkenes tethered with a pronucleophile is an efficient transformation that converts easily accessible starting materials to fluorinated heterocycles in a single step. We report herein an unprecedented Pd(II)-catalyzed oxidative domino process that transforms homoallylic amides to 5,6-dihydro-4H-1,3-oxazines through a domino oxypalladation/PdII–oxidation/dyotropic rearrangement/reductive elimination sequence. Three chemical bonds are created under these operationally simple conditions. Taking advantage of the facile hydrolysis of the α-fluoro tertiary alkyl ether under acidic conditions, a one-pot conversion of homoallylic amides to homologated ketones is subsequently developed, which represents a rare example of regioselective Wacker oxidation reaction of 1,1-disubstituted alkenes.
{"title":"Chemoselective Pd-Based Dyotropic Rearrangement: Fluorocyclization and Regioselective Wacker Reaction of Homoallylic Amides","authors":"Chen-Xu Liu, Qian Wang and Jieping Zhu*, ","doi":"10.1021/jacs.4c1335910.1021/jacs.4c13359","DOIUrl":"https://doi.org/10.1021/jacs.4c13359https://doi.org/10.1021/jacs.4c13359","url":null,"abstract":"<p >Fluorocyclization of alkenes tethered with a pronucleophile is an efficient transformation that converts easily accessible starting materials to fluorinated heterocycles in a single step. We report herein an unprecedented Pd(II)-catalyzed oxidative domino process that transforms homoallylic amides to 5,6-dihydro-4<i>H</i>-1,3-oxazines through a domino oxypalladation/Pd<sup>II</sup>–oxidation/dyotropic rearrangement/reductive elimination sequence. Three chemical bonds are created under these operationally simple conditions. Taking advantage of the facile hydrolysis of the α-fluoro tertiary alkyl ether under acidic conditions, a one-pot conversion of homoallylic amides to homologated ketones is subsequently developed, which represents a rare example of regioselective Wacker oxidation reaction of 1,1-disubstituted alkenes.</p>","PeriodicalId":14,"journal":{"name":"ACS Combinatorial Science","volume":"146 44","pages":"30014–30019 30014–30019"},"PeriodicalIF":14.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142585559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}