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Development of an advanced acetaldehyde detection solution based on yeast and bacterial surface display technology. 基于酵母和细菌表面显示技术的先进乙醛检测溶液的开发。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-30 DOI: 10.1016/j.jbiotec.2024.11.020
Weigeng Liu, Jiamin Cao, Di Wu, Yue Wu, Yi Qin, Yanlin Liu, Xixi Zhao, Yuyang Song

Acetaldehyde, a carcinogen widely present in various beverages and the natural environment, necessitates convenient and efficient detection methods. In this work, two different host strains were used to develop a sensitive, convenient, and efficient whole-cell optical biosensor for acetaldehyde detection. Acetaldehyde dehydrogenase (AldH) was displayed on the cell surface of Saccharomyces cerevisiae and E. coli using flocculin protein and the N-terminal ice nucleation protein (INP), respectively. The successful construction of yeast and bacteria surface display platforms was confirmed by laser scanning confocal microscopy. Then, the optimal AldH-display system for yeast and bacteria was confirmed. The optimum reaction conditions were determined by changing testing temperatures and pH values. The differences between the two display systems were compared. The highest whole-cell activities of yeast and bacteria under optimal conditions were 3.68 ± 0.07 U/mL/OD600 for BY-S6G and 6.95 ± 0.04 U/mL/OD600 for E-32-IrA. The strains with the best performance were chosen for the detection of acetaldehyde in wine and other beverage samples and showed substrate specificity and accuracy, in which the recovery rate ranged between 94.4 % and 110.1 %. The results demonstrated that the AldH surface display strains could be used as an optical biosensor to detect acetaldehyde in beverages and red wine.

乙醛是一种广泛存在于各种饮料和自然环境中的致癌物,需要方便高效的检测方法。在这项工作中,利用两种不同的宿主菌株开发了一种灵敏、方便、高效的全细胞光学生物传感器,用于乙醛检测。利用絮凝蛋白和n端冰核蛋白分别在酿酒酵母和大肠杆菌的细胞表面显示乙醛脱氢酶(AldH)。激光扫描共聚焦显微镜证实了酵母和细菌表面展示平台的成功构建。然后,确定了酵母和细菌的最佳aldh显示系统。通过改变实验温度和pH值确定最佳反应条件。比较了两种显示系统的差异。在最佳条件下,酵母和细菌的全细胞活性最高,BY-S6G为3.68±0.07U/mL/OD600, E-32-IrA为6.95±0.04U/mL/OD600。选择性能最好的菌株用于检测葡萄酒和其他饮料样品中的乙醛,具有底物特异性和准确性,回收率在94.4% ~ 110.1%之间。结果表明,AldH表面显示菌株可以作为一种光学生物传感器用于检测饮料和红酒中的乙醛。
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引用次数: 0
Thermal degradation kinetics and purification of C-phycocyanin from thermophilic and mesophilic cyanobacteria. 嗜热和中温蓝藻热降解动力学及c -藻蓝蛋白的纯化。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-29 DOI: 10.1016/j.jbiotec.2024.11.018
Supenya Chittapun, Kattiya Suwanmanee, Chatchol Kongsinkaew, Soisuda Pornpukdeewattana, Yusuf Chisti, Theppanya Charoenrat

The natural blue colorant C-phycocyanin (C-PC) has many potential applications but its poor heat stability limits its commercial use. This study compares the production and thermal stability of C-PC from two cyanobacteria: the thermophilic Thermosynechococcus sp. TUBT-T01 and the mesophilic Synechococcus cedrorum TISTR8589. Thermosynechococcus sp. produced nearly 1.9-fold more C-PC than S. cedrorum. Batch adsorption using a chromatographic cationic ion exchange resin (Streamline Direct HST1) was used to effectively purify the C-PC. The equilibrium adsorption capacity (Qeq) of the resin for C-PC was the highest at pH 5. At this pH, the Qeq for the thermophilic C-PC was 5.5 ± 0.1 mg mL⁻¹ , whereas for the mesophilic C-PC it was 1.5 ± 0.2 mg mL⁻¹ . Purification increased the concentration of the thermophilic C-PC by 5.9-fold, and that of mesophilic C-PC by 4.2-fold. The purity ratios of the final products from the two cyanobacteria were similar at ∼2.2. At 60 °C and pH 7, the C-PC of Thermosynechococcus sp. had ∼12-times longer half-life than the mesophilic C-PC; however, the productivity of the thermophilic C-PC was comparatively low because of a low biomass productivity of Thermosynechococcus sp.

天然蓝色着色剂c -藻蓝蛋白(C-PC)有许多潜在的应用,但其热稳定性差限制了其商业应用。本研究比较了两种蓝藻:嗜热的热聚球菌TUBT-T01和嗜热的蜡状聚球菌TISTR8589的C-PC产量和热稳定性。热聚球菌产生的C-PC几乎是塞德勒姆球菌的1.9倍。采用色谱阳离子交换树脂(Streamline Direct HST1)批量吸附法对C-PC进行了有效的纯化。树脂对C-PC的平衡吸附量(Qeq)在pH为5时最高。在这个pH下,嗜热的C-PC的Qeq是5.5±0.1mg - 1,而嗜温的C-PC的Qeq是1.5±0.2mg - 1。纯化后,嗜热C-PC浓度提高5.9倍,中温C-PC浓度提高4.2倍。两种蓝藻的最终产物纯度比相似,为~2.2。在60℃和pH 7条件下,热聚球菌C- pc的半衰期比中温性C- pc长约12倍;然而,由于热聚球菌的生物量生产力较低,嗜热性C-PC的生产力相对较低。
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引用次数: 0
A review towards sustainable analyte detection: Biomimetic inspiration in biosensor technology. 可持续分析物检测综述:生物传感器技术的仿生启示。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-28 DOI: 10.1016/j.jbiotec.2024.11.015
Pratistha Bhagat, Lata Sheo Bachan Upadhyay

The branch of biomimetics has witnessed a profound impact on the field of biosensor technology, reflected in sustainable analyte detection. A vast array of biosensor platforms with improved/upgraded performance have been developed and reported. No wonder the motivation from the field of biomimetics has a huge impact on generating detection systems with escalated degrees of manipulation and tunability at different levels. More recently, biomimetic biosensor technology has found potential in constructing bio-inspired materials such as aptamers, MIPs, nanozymes, DNAzymes, Synzymes, etc. to be integrated with biosensor fabrication. The establishment of a sensing setup is not limited to the bioreceptor fabrication; the construction of transducing element using biomimetic material have been reported too. Moreover, to serve a biosensing of target analyte from a fatal diseased sample different biomimetic architectures can be designed that mimic in-vivo microenvironmental surroundings to get an exact microenvironment equivalent to natural conditions leading towards designing of a precise treatment strategy. This research area is ever-evolving as there is a scope for upgradation and refinement due to advancing technologies including nanotechnology, biomimetic nanomaterials, microfluidics, optical sensors, etc. This review is an attempt to comprehend and juxtapose the very primary innovations in the field of biomimetic biosensor technology to realize its comprehensive and wide-range scope and possibilities.

仿生学分支对生物传感器技术领域产生了深远的影响,体现在可持续分析物检测上。大量具有改进/升级性能的生物传感器平台已经被开发和报道。难怪来自仿生学领域的动机对产生具有不同级别操作和可调性升级程度的检测系统产生巨大影响。最近,仿生生物传感器技术已经发现了构建生物启发材料的潜力,如适配体、mip、纳米酶、DNAzymes、Synzymes等,与生物传感器制造相结合。传感装置的建立不限于生物受体的制造;利用仿生材料构建转导元件也有报道。此外,为了从致命的患病样本中对目标分析物进行生物传感,可以设计不同的仿生结构,模拟体内微环境,以获得相当于自然条件的精确微环境,从而设计精确的治疗策略。由于纳米技术、仿生纳米材料、微流体、光学传感器等先进技术的发展,这一研究领域不断发展,升级和完善的范围不断扩大。本文试图对仿生生物传感器技术领域的主要创新进行理解和并列,以实现其全面和广泛的范围和可能性。
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引用次数: 0
Assessing the role of deep eutectic solvents in Yarrowia lipolytica inhibition 评估深共晶溶剂在抑制多脂耶氏菌中的作用
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-28 DOI: 10.1016/j.jbiotec.2024.11.016
Filipe S. Buarque , Bernardo D. Ribeiro , Mara G. Freire , Maria A.Z. Coelho , Matheus M. Pereira
Yarrowia lipolytica has gained recognition as a microorganism with biological relevance and extensive biotechnological applications. Some of its features include a high enzyme secretion capacity and a high cell-density fermentation mode. Hexokinase (YlHxk) is a vital enzyme in Y. lipolytica growth since it catalyzes glucose metabolism through phosphorylation in the glycolytic pathway. Given the potential application of deep eutectic solvents (DES) as novel solvents in biotechnological processes, this study evaluated the influence of eighteen DES on the growth of Y. lipolytica. Furthermore, this work examined the effects of individual ions on the YlHxk enzyme by analyzing its enzymatic tunnel structure, molecule transport, and molecular docking. The results revealed a significant reduction in yeast growth in the presence of most DES compared to the control (medium without DES), with the exception of the [N8881]Cl: hexanoic acid (1:1) DES. The growth varied between 11.95 ± 0.60 and 0.68 ± 0.17 g dry cell weight L−1. According to the enzymatic tunnel analysis, DES components associated with the lowest microbial growth values were transported through tunnel 1. On the other hand, DES components had their pathway facilitated through tunnel 2 ([N8881]+ and hexanoic acid) and showed growth values close to the control. Molecular docking analysis identified a similarity between all the ligands in this tunnel (including substrate and product), presenting binding interactions with the ASN273 amino acid of the YlHxk active site. Combining experimental results with computational tools provided promising insights at the molecular level, while also potentially reducing analysis costs and time, paving the way for similar approaches in broad biocatalytic reactions.
脂质体耶氏菌是一种具有生物学意义和广泛生物技术应用的微生物。它的一些特点包括高酶分泌能力和高细胞密度发酵模式。己糖激酶(YlHxk)是一种至关重要的酶,因为它在糖酵解途径中通过磷酸化催化葡萄糖代谢。鉴于深共晶溶剂(DES)作为新型溶剂在生物工艺过程中的潜在应用,本研究评估了18个DES对聚脂y菌生长的影响。此外,本研究还通过分析YlHxk酶的通道结构、分子运输和分子对接来研究单个离子对YlHxk酶的影响。结果表明,除[N8881]Cl:己酸(1:1)DES外,大多数DES的存在显著降低了酵母的生长,其生长变化在11.95±0.60 ~ 0.68±0.17 g干细胞重L−1之间。根据酶隧道分析,与微生物生长值最低相关的DES组分通过隧道1输送。另一方面,DES组分通过隧道2 ([N8881]+和己酸)的通路更加便利,其生长值与对照接近。分子对接分析发现该通道中所有配体(包括底物和产物)具有相似性,与YlHxk活性位点的ASN273氨基酸存在结合相互作用。将实验结果与计算工具相结合,在分子水平上提供了有希望的见解,同时也有可能降低分析成本和时间,为广泛的生物催化反应中的类似方法铺平了道路。
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引用次数: 0
Bone marrow-derived dendritic cells play a role in attenuating inflammation on Bothrops jararacussu venom muscle damage. 骨髓来源的树突状细胞在减轻刺鼠毒液肌肉损伤的炎症反应中起作用。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-28 DOI: 10.1016/j.jbiotec.2024.11.014
N M Nery, A A Ferreira E Ferreira, H M Santana, S N Serrath, V P Reis, M V Paloschi, M D S Silva, J G S Magalhães, L F Cruz, T Y Shibayama, S S Setubal, J P Zuliani

The immune system is regulated by dendritic cells (DCs), which are highly specialized cells for presenting antigens. They are thought of as natural sentinels that start the immune response triggered by naive T cells against invasive infections. DCs participate in the initial stage of muscle damage in conjunction with monocytes, macrophages, and myogenic cells. The goal of this study was to determine whether DCs might mitigate tissue damage and aid in the regeneration of the gastrocnemius muscle following envenomation with Bothrops jararacussu venom (BjV). Mature bone marrow dendritic cells (BMDCs) were used to treat mice in an experimental envenomation model with BjV by activation with lipopolysaccharide (LPS). BMDCs were injected into the gastrocnemius muscle at the same site of the BjV injury, in a single dose, 3 h after envenomation, and envenoming effects were observed at different periods for 7 days. In both untreated (NT) and treated (T) groups tissue necrosis, leukocyte influx, and hemorrhage at the injury site were observed. Results showed an increase in serum and tissue CK as well as IL-6, TNF-α, and IL-1β release in the first hours after envenoming. In contrast, after treatment with BMDCs results obtained demonstrated an attenuated local effect with a small leukocyte influx, decreased or non-existent necrosis and hemorrhage, as well as a reduction in both serum and tissue CK levels as well as cytokine release and, consequently, the onset of a moderate regenerative process. The present study's findings concluded that BjV causes a severe inflammatory reaction at the site of injury and that treating envenoming with BMDCs in the muscle was crucial for minimizing damage to the muscle and the inflammatory reaction and promoting the early onset of the tissue repair process.

免疫系统由树突状细胞(dc)调节,树突状细胞是高度特化的抗原呈递细胞。它们被认为是天然的哨兵,启动由幼稚T细胞触发的免疫反应,对抗侵入性感染。dc与单核细胞、巨噬细胞和成肌细胞一起参与肌肉损伤的初始阶段。本研究的目的是确定树突状细胞是否可以减轻组织损伤,并帮助被倭鼠毒汁(BjV)毒害后的腓肠肌再生。利用成熟骨髓树突状细胞(BMDCs)通过脂多糖(LPS)活化治疗实验性BjV中毒模型小鼠。在毒化后3h,将BMDCs单剂量注射于BjV损伤的同一部位腓肠肌,并在7天的不同时期观察毒化效果。在未治疗组(NT)和治疗组(T)中均观察到组织坏死、白细胞内流和损伤部位出血。结果显示,血清和组织CK以及IL-6、TNF-α和IL-1β的释放在摄食后的第一个小时内增加。相反,用BMDCs治疗后,结果显示局部效果减弱,白细胞流入较少,坏死和出血减少或不存在,血清和组织CK水平降低,细胞因子释放减少,因此,开始适度的再生过程。本研究的结果表明,BjV在损伤部位引起严重的炎症反应,用肌肉中的BMDCs治疗内源性疾病对于减少肌肉损伤和炎症反应以及促进组织修复过程的早期启动至关重要。
{"title":"Bone marrow-derived dendritic cells play a role in attenuating inflammation on Bothrops jararacussu venom muscle damage.","authors":"N M Nery, A A Ferreira E Ferreira, H M Santana, S N Serrath, V P Reis, M V Paloschi, M D S Silva, J G S Magalhães, L F Cruz, T Y Shibayama, S S Setubal, J P Zuliani","doi":"10.1016/j.jbiotec.2024.11.014","DOIUrl":"10.1016/j.jbiotec.2024.11.014","url":null,"abstract":"<p><p>The immune system is regulated by dendritic cells (DCs), which are highly specialized cells for presenting antigens. They are thought of as natural sentinels that start the immune response triggered by naive T cells against invasive infections. DCs participate in the initial stage of muscle damage in conjunction with monocytes, macrophages, and myogenic cells. The goal of this study was to determine whether DCs might mitigate tissue damage and aid in the regeneration of the gastrocnemius muscle following envenomation with Bothrops jararacussu venom (BjV). Mature bone marrow dendritic cells (BMDCs) were used to treat mice in an experimental envenomation model with BjV by activation with lipopolysaccharide (LPS). BMDCs were injected into the gastrocnemius muscle at the same site of the BjV injury, in a single dose, 3 h after envenomation, and envenoming effects were observed at different periods for 7 days. In both untreated (NT) and treated (T) groups tissue necrosis, leukocyte influx, and hemorrhage at the injury site were observed. Results showed an increase in serum and tissue CK as well as IL-6, TNF-α, and IL-1β release in the first hours after envenoming. In contrast, after treatment with BMDCs results obtained demonstrated an attenuated local effect with a small leukocyte influx, decreased or non-existent necrosis and hemorrhage, as well as a reduction in both serum and tissue CK levels as well as cytokine release and, consequently, the onset of a moderate regenerative process. The present study's findings concluded that BjV causes a severe inflammatory reaction at the site of injury and that treating envenoming with BMDCs in the muscle was crucial for minimizing damage to the muscle and the inflammatory reaction and promoting the early onset of the tissue repair process.</p>","PeriodicalId":15153,"journal":{"name":"Journal of biotechnology","volume":" ","pages":"29-40"},"PeriodicalIF":4.1,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142769260","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Creation of catalytic activity-improved hyperthermophilic PQQ-dependent aldose sugar dehydrogenase and its efficient use for high performance electro-device 催化活性改进的超耐热pqq依赖性醛糖脱氢酶的建立及其在高性能电器件中的高效应用。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-28 DOI: 10.1016/j.jbiotec.2024.11.017
Miku Maeno , Yusuke Miki , Kazuki Ito , Haruhiko Sakuraba , Toshihisa Ohshima , Shin-ichiro Suye , Takenori Satomura
PQQ-dependent aldose sugar dehydrogenase (PQQ-ASD) from the hyperthermophilic archaeon Pyrobaculum aerophilum (PaeASD) has great potential as an element for durable bioelectrodevices owing to its exceptional stability against high temperatures and across a broad pH spectrum. However, its application is constrained by low electric current output of the enzyme-immobilized electrodes, which is attributable to its low catalytic activity. A directed evolutionary approach was performed on PaeASD to improve enzyme activity, resulting in the identification of a PaeASD s24 mutant containing six amino acid substitutions, which exhibited a 16-fold higher specific activity than that of wild type. Although each single amino acid mutant among these substitutions exhibited lower enzyme activity than PaeASD s24, the double mutant R64Q/D350N showed enzyme activity comparable to that of PaeASD s24. These amino acids located in the vicinity of coenzyme PQQ within the PaeASD molecule are also highly conserved with those of PQQ-ASDs reported to date. Thus, these amino acids play crucial roles in the catalytic activity of PQQ-ASD. Furthermore, the Km value for d-glucose of PaeASD s24-immobilized electrode decreased to approximately 1/3 that of the wild-type-immobilized electrode. These results indicate that the PaeASD s24 mutant is an excellent catalyst for potential bioelectrodevice applications.
pqq依赖性醛糖脱氢酶(PQQ-ASD)来自嗜热古菌嗜气焦杆菌(PaeASD),由于其对高温和宽pH谱的优异稳定性,作为耐用生物电子器件的元件具有巨大的潜力。然而,它的应用受到酶固定电极的低电流输出的限制,这是由于它的低催化活性。对PaeASD进行定向进化以提高酶活性,结果鉴定出含有6个氨基酸取代的PaeASD s24突变体,其比野生型的特异性活性高16倍。虽然这些替换中的每个单氨基酸突变体的酶活性都低于PaeASD s24,但双突变体R64Q/D350N的酶活性与PaeASD s24相当。这些位于PaeASD分子中辅酶PQQ附近的氨基酸也与迄今报道的pq - asd的氨基酸高度保守。因此,这些氨基酸在PQQ-ASD的催化活性中起着至关重要的作用。此外,paeasds24固定电极的d-葡萄糖Km值降至野生型固定电极的1/3左右。这些结果表明PaeASD s24突变体是一种极好的催化剂,具有潜在的生物电器件应用前景。
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引用次数: 0
Discovery and characterization of NADH oxidases for selective sustainable synthesis of 5-hydroxymethylfuran carboxylic acid. 发现并鉴定用于选择性可持续合成 5- 羟甲基呋喃羧酸的 NADH 氧化酶。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-26 DOI: 10.1016/j.jbiotec.2024.11.009
Karishma Shah, Daniel Kracher, Peter Macheroux, Silvia Wallner, André Pick, Robert Kourist

Efficient regeneration of NAD+ remains a significant challenge for oxidative biotransformations. In order to identify enzymes with higher activity and stability, a panel of NADH oxidases (Nox) was investigated in the regeneration of nicotinamide cofactors for the oxidation of hydroxymethyl furfural (HMF) to 5-hydroxymethyl-2-furancarboxylic acid (HMFCA). We present novel Nox that exhibit remarkable catalytic activities, elevated thermal and pH stabilities, and higher intrinsic flavin loadings, thus eliminating the need for external flavin addition. The kinetic analysis of the NADH oxidases indicates that AdNox, GdNox, CmNox, and LvNox exhibit Vmax values of 86 U/mg, 50 U/mg, 4.3 U/mg, and 23 U/mg, respectively. When these NADH oxidases were applied in a HMF oxidation reaction, LvNox demonstrated the highest HMFCA yield of 97 % in the presence of 0.1 mM NAD and 10 mM HMF. In contrast to previously reported NADH oxidases from the same family, these NADH oxidases naturally accept NADPH as a substrate. Rapid kinetics experiments identified the oxidative reaction as the rate-limiting step of the reaction. NADH oxidases achieved high atom economy, a high reaction mass efficiency and a low process mass intensity. The findings contribute significantly to the field of biocatalysis and offer potential avenues for more environmentally friendly cofactor regeneration in chemical synthesis.

NAD+ 的高效再生仍然是氧化生物转化过程中的一项重大挑战。为了鉴定具有更高活性和稳定性的酶,我们研究了一组 NADH 氧化酶(Nox),它们在将羟甲基糠醛(HMF)氧化为 5-hydroxymethyl-2-furancarboxylic acid(HMFCA)过程中用于烟酰胺辅助因子的再生。我们展示了新型 Nox,它们具有显著的催化活性、较高的热稳定性和 pH 稳定性,以及较高的固有黄素负载,因此无需添加外部黄素。NADH 氧化酶的动力学分析表明,AdNox、GdNox、CmNox 和 LvNox 的 Vmax 值分别为 86 U/mg、50 U/mg、4.3 U/mg 和 23 U/mg。将这些 NADH 氧化酶用于 HMF 氧化反应时,在 0.1mM NAD 和 10mM HMF 存在下,LvNox 的 HMFCA 产率最高,达到 97%。与之前报道的同族 NADH 氧化酶不同,这些 NADH 氧化酶天然接受 NADPH 作为底物。快速动力学实验确定氧化反应是该反应的限速步骤。NADH 氧化酶实现了高原子经济性、高反应质量效率和低过程质量强度。这些发现为生物催化领域做出了重要贡献,并为化学合成中更环保的辅助因子再生提供了潜在途径。
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引用次数: 0
Mechanism of rhamnolipid promoting the degradation of polycyclic aromatic hydrocarbons by gram-positive bacteria—Enhance transmembrane transport and electron transfer 鼠李糖脂促进革兰氏阳性菌降解多环芳烃的机制--增强跨膜转运和电子传递
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-23 DOI: 10.1016/j.jbiotec.2024.11.010
Bo Zhang , Lei Wang , Zhenjun Diwu , Maiqian Nie , Hongyun Nie
In this study, the Gram-positive bacterium Bacillus licheniformis T5 was utilized to investigate the impact of rhamnolipid on cell membrane and cell wall, as well as enzyme activity and electron transfer rate within cells. Results indicated that at the optimal concentration of rhamnolipid (200 mg/L), the cell membrane protein and cell wall peptidoglycan content of T5 decreased significantly. Infrared spectrum analysis and ultrastructure observations confirmed these findings, revealing noticeable changes in cell morphology in the presence of rhamnolipid. Specifically, cell folds increased, cell wall texture loosened, thickness decreased sharply, transmembrane channels appeared, and the plasma wall slightly separated. These alterations likely contributed to the increased permeability of the cell membrane. Furthermore, rhamnolipid accelerated the electron transfer rate in T5 cells, enhancing oxidoreductase activity. This study elucidates the mechanism through which rhamnolipid promotes the degradation of polycyclic aromatic hydrocarbons by Gram-positive bacteria, focusing on transmembrane transport and catalytic metabolism.
本研究以革兰氏阳性地衣芽孢杆菌 T5 为研究对象,探讨鼠李糖脂对细胞膜、细胞壁以及细胞内酶活性和电子传递速率的影响。结果表明,在鼠李糖脂的最佳浓度(200 毫克/升)下,T5 的细胞膜蛋白质和细胞壁肽聚糖含量显著下降。红外光谱分析和超微结构观察证实了这些发现,揭示了鼠李糖脂存在时细胞形态的明显变化。具体来说,细胞褶皱增加,细胞壁质地松散,厚度急剧下降,跨膜通道出现,质壁轻微分离。这些变化可能是细胞膜通透性增加的原因。此外,鼠李糖脂还加快了 T5 细胞的电子传递速率,增强了氧化还原酶的活性。本研究阐明了鼠李糖脂促进革兰氏阳性细菌降解多环芳烃的机制,重点是跨膜运输和催化代谢。
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引用次数: 0
Engineering Saccharomyces boulardii for cell surface display of heterologous protein 改造布拉氏酵母菌,使其在细胞表面显示异源蛋白。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-20 DOI: 10.1016/j.jbiotec.2024.11.013
Jamin Shin , Gayoung Lee , Won-Jae Chi , Sujeong Park , Yong-Su Jin , Soo Rin Kim
Saccharomyces boulardii and Saccharomyces cerevisiae share over 99 % genetic similarity yet exhibit distinct metabolic traits. While the cell surface display system of S. cerevisiae is well-documented, the equivalent system in S. boulardii has yet to be fully characterized. This study investigates the cell surface display system of S. boulardii for the expression of a heterologous protein using different anchor proteins. Six strains expressing the enhanced green fluorescent protein (Egfp) and an anchor protein as a fusion protein were constructed to visualize the cell surface display system. Then a heterologous endo-inulinase protein was expressed with selected anchor proteins through fluorescence intensity comparison. Analysis by fluorescence microscopy revealed that the anchor protein Sed1 exhibited the highest fluorescence intensity. Furthermore, expressed selected anchor proteins and heterologous protein, endo-inulinase, the engineered strain could degrade and consume almost inulin in 72 h. Through endo-inulinase expression, we confirmed that not only Egfp but also heterologous protein is well expressed, and we successfully built an S. boulardii cell surface display system.
布拉氏酵母菌(Saccharomyces boulardii)和酿酒酵母菌(Saccharomyces cerevisiae)的基因相似度超过 99%,但却表现出不同的代谢特征。虽然酿酒酵母的细胞表面显示系统已被充分记录,但布拉氏酵母的等效系统尚未被完全描述。本研究调查了布拉氏酵母菌利用不同锚蛋白表达异源蛋白的细胞表面展示系统。研究人员构建了六株表达增强型绿色荧光蛋白(Egfp)和锚蛋白融合蛋白的菌株,以观察细胞表面显示系统。然后,通过荧光强度比较,用选定的锚蛋白表达异源内胰蛋白酶蛋白。荧光显微镜分析表明,锚蛋白 Sed1 的荧光强度最高。此外,表达了所选的锚蛋白和异源蛋白--内切菊粉酶的工程菌株能在 72 小时内降解并消耗掉几乎所有菊粉。通过内胰蛋白酶的表达,我们证实了不仅是 Egfp,异源蛋白也得到了很好的表达,并成功构建了布拉氏酵母菌细胞表面展示系统。
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引用次数: 0
Comparative analysis of substrate- and regio-selectivity of HpaB monooxygenases and their application to hydroxydaidzein synthesis HpaB 单加氧酶底物和区域选择性的比较分析及其在羟基蝙蝠葛素合成中的应用。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-20 DOI: 10.1016/j.jbiotec.2024.11.012
Sachiko Watanabe , Hideki Kato , Kento Yoshinaga , Akiko Kohara , Yuichi Ukawa , Akinobu Matsuyama , Toshiki Furuya
4-Hydroxyphenylacetate 3-hydroxylase (HpaB) has high potential for use in polyphenol synthesis via ortho-hydroxylation. Although the HpaB enzymes from Pseudomonas aeruginosa (PaHpaB) and Escherichia coli (EcHpaB) have been well studied, few studies have compared their activity and substrate selectivity. Thus, which HpaB is optimal for use in the biotechnological production of polyphenols is unclear. In this study, we performed a comparative analysis of the substrate- and regio-selectivity of PaHpaB, EcHpaB, and the recently discovered enzyme from Rhodococcus opacus (RoHpaB). The activity of these enzymes was first compared toward representative aromatic substrates. PaHpaB and EcHpaB exhibited very similar catalytic activity toward p-coumaric acid and tyrosol with one benzene ring, whereas PaHpaB exhibited greater activity than EcHpaB toward resveratrol and naringenin with two benzene rings. These results suggest that PaHpaB is superior to EcHpaB in converting bulky compounds. Furthermore, PaHpaB also exhibited catalytic activity toward a flavonoid, daidzein (7,4′-dihydroxyisoflavone), whereas EcHpaB did not. RoHpaB also exhibited strong activity toward daidzein in addition to other aromatic substrates. Interestingly, PaHpaB hydroxylated the 6-position of daidzein, whereas RoHpaB hydroxylated the 3′-position. PaHpaB and RoHpaB enabled the facile synthesis of not only 6-hydroxydaidzein and 3′-hydroxydaidzein but also 6,3′-dihydroxydaidzein via the cascade reaction. This study is the first to demonstrate synthesis of hydroxydaidzeins using HpaB enzymes.
4-Hydroxyphenylacetate 3-hydroxylase (HpaB)极有可能通过正羟化作用用于多酚合成。虽然对铜绿假单胞菌(PaHpaB)和大肠杆菌(EcHpaB)的 HpaB 酶进行了深入研究,但很少有研究对它们的活性和底物选择性进行比较。因此,哪种 HpaB 最适合用于多酚的生物技术生产尚不清楚。在本研究中,我们对 PaHpaB、EcHpaB 和最近从 Rhodococcus opacus(RoHpaB)中发现的酶的底物和区域选择性进行了比较分析。首先比较了这些酶对代表性芳香底物的活性。PaHpaB 和 EcHpaB 对具有一个苯环的对香豆酸和酪醇表现出非常相似的催化活性,而 PaHpaB 对具有两个苯环的白藜芦醇和柚皮苷表现出比 EcHpaB 更大的活性。这些结果表明,PaHpaB 在转化大体积化合物方面优于 EcHpaB。此外,PaHpaB 还对黄酮类化合物大黄素(7,4'-二羟基异黄酮)具有催化活性,而 EcHpaB 则没有。除其他芳香底物外,RoHpaB 对麦角苷也表现出很强的活性。有趣的是,PaHpaB羟化的是大黄素的 6-位,而 RoHpaB 羟化的是 3'-位。PaHpaB 和 RoHpaB 不仅能通过级联反应简便地合成 6-羟基地黄素和 3'-羟基地黄素,还能合成 6,3'-二羟基地黄素。这项研究首次证明了利用 HpaB 酶合成羟基十二烷。
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Journal of biotechnology
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