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Establishment of the REMBAC-cassette, a rapid, efficient and manifold BacMam tool for recombinant protein expression 一种快速、高效、多元的重组蛋白表达工具REMBAC-cassette的建立。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.jbiotec.2024.12.011
Manuel Reithofer, Sophie Huber, Reingard Grabherr
Efficient recombinant protein production requires mammalian stable cell lines or often relies on inefficient transfection processes. Baculoviral transduction of mammalian cells (BacMam) offers cost-effective and robust gene transfer and straightforward scalability. The advantages over conventional approaches are, no need of high biosafety level laboratories, efficient transduction of various cell types and transfer of large transgenes into host cells. In our study, we aim to develop a high expression cassette to increase yields of baculoviral transduction. The establishment follows a sequential approach by first identifying the strongest promoter, followed by intron and WPRE sequences as enhancer elements for transcription and translation. The resulting REMBAC-cassette was compared to conventional transfection in suspension and adherent cells. Irrespective of the cell line, transduction reached nearly 100 % efficiency and led to almost 10-fold increases of gene expression levels. We confirmed these results in larger scale with batch and fed-batch cultivations. Finally, expression of different soluble proteins with high degrees of complexity confirmed the versatility of our established cassette. Overall, the REMBAC-cassette incorporated into the BacMam platform is a manifold tool offering advantages over standard transfection, in the scalability, efficiency and gene expression, which results in higher yields, shorter cultivation times and consequently cost-effective production processes.
高效的重组蛋白生产需要哺乳动物稳定的细胞系,或者往往依赖于低效的转染过程。哺乳动物细胞杆状病毒转导(BacMam)具有成本效益和强大的基因转移和简单的可扩展性。与传统方法相比,该方法的优点是不需要高生物安全水平的实验室,可以高效地转导各种类型的细胞,并将大型转基因转移到宿主细胞中。在我们的研究中,我们的目标是开发一个高表达盒,以提高杆状病毒转导的产量。建立遵循顺序方法,首先确定最强启动子,然后确定内含子和WPRE序列作为转录和翻译的增强子元件。将得到的REMBAC-cassette与悬浮细胞和贴壁细胞中的常规转染进行比较。无论哪种细胞系,转导都达到了接近100%的效率,并导致基因表达水平增加了近10倍。我们通过批量和补料批量的大规模培养证实了这些结果。最后,高度复杂的不同可溶性蛋白的表达证实了我们所建立的卡带的多功能性。总体而言,整合到BacMam平台中的REMBAC-cassette是一个多方面的工具,在可扩展性,效率和基因表达方面比标准转染具有优势,从而提高产量,缩短培养时间,从而降低生产过程的成本效益。
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引用次数: 0
Molecular mechanism of GSH metabolism and autophagy in NAC-promoted recombinant human serum albumin and follicle stimulating hormone beta fusion protein secretion in Pichia pastoris nac促进重组人血清白蛋白和促卵泡激素融合蛋白分泌中谷胱甘肽代谢和自噬的分子机制
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.jbiotec.2024.12.006
Gang Luo , Wen Yang , Zijian Geng , Yiyi Cheng , Yingqing Xu , Yimeng Xiao , Jiying Liu
The Pichia pastoris expression system is a favorable platform for production of pharmaceutical proteins. Treatment of strains with N-acetyl-L-cysteine (NAC) has been shown to enhance the yield of recombinant proteins, thereby contributing to a reduction in production costs. However, the specific mechanism of action of NAC remains unclear. Previous research has indicated that glutathione (GSH) and autophagy are involved in the increased production of human serum albumin and porcine follicle-stimulating hormone β (HSA-pFSHβ) by NAC. This study investigated the potential interaction between GSH and autophagy in the production of HSA-pFSHβ. The findings indicated that sulfhydryl-free antioxidants such as melatonin, vitamin C, or vitamin E did not exhibit similar effects to NAC in enhancing HSA-pFSHβ yield. Moreover, NAC was found to enhance HSA-pFSHβ production by modulating GSH metabolism to reduce GSH consumption, increase total GSH levels, as well as glutathione peroxidase (GSH-Px) and glutathione reductase (GR) activities. Additionally, inhibition of autophagy through disruption of autophagy scaffolding proteins Atg1 or Atg11 led to an increase in recombinant HSA-pFSHβ production. Furthermore, NAC significantly decreased the phosphorylation of Slt2, and the absence of the SLT2 gene influenced the effect of NAC on HSA-pFSHβ secretion by modulating mitophagy and GSH metabolism. In conclusion, these results suggest a complex interplay between GSH metabolism and autophagy in the regulation of NAC-induced HSA-pFSHβ secretion.
毕赤酵母表达系统是生产药用蛋白的良好平台。用n -乙酰- l-半胱氨酸(NAC)处理菌株已被证明可以提高重组蛋白的产量,从而有助于降低生产成本。然而,NAC的具体作用机制尚不清楚。先前的研究表明,谷胱甘肽(GSH)和自噬参与NAC增加人血清白蛋白和猪促卵泡激素β (HSA-pFSHβ)的产生。本研究探讨了谷胱甘肽和自噬在HSA-pFSHβ产生中的潜在相互作用。研究结果表明,无巯基抗氧化剂如褪黑素、维生素C或维生素E在提高HSA-pFSHβ产量方面没有表现出与NAC相似的效果。此外,NAC通过调节GSH代谢减少GSH消耗,提高总GSH水平,以及谷胱甘肽过氧化物酶(GSH- px)和谷胱甘肽还原酶(GR)活性,从而增加HSA-pFSHβ的产生。此外,通过破坏自噬支架蛋白Atg1或Atg11抑制自噬导致重组HSA-pFSHβ的产生增加。此外,NAC显著降低了Slt2的磷酸化水平,Slt2基因的缺失影响了NAC通过调节线粒体自噬和GSH代谢对HSA-pFSHβ分泌的影响。综上所述,这些结果表明GSH代谢和自噬之间存在复杂的相互作用,从而调节nac诱导的HSA-pFSHβ分泌。
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引用次数: 0
Customized design of host-independent T7 expression system (HITES) for a broad host range 针对广泛宿主范围的非宿主T7表达系统(HITES)的定制设计。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.jbiotec.2024.12.012
Mingxin Cui , Okei Wong , Kexin Shi , Qiang Li , Wenya Wang
Efficient methods and universal DNA elements are eagerly required for the expression of proteins and the production of target chemicals in synthetic biology and metabolic engineering. This paper develops a customized-design approach by utilizing the host-independent T7 expression system (HITES), which facilitates the rational design and rapid construction of T7 expression systems. Firstly, the EiL (Upper-limit value of initial enzyme activity) value is discovered to play a pivotal factor in the successful construction of the T7 expression system, different host strains exhibit varying EiL values, and this study presents a method to measure the EiL values. Secondly, E. coli DH5α is chosen as the host strain, and it demonstrates that various strategies to modulate T7 RNA polymerase activity can efficiently construct the HITES T7 expression system in E. coli DH5α under the guidance of EiL. Lastly, the customized-design of HITES enables the efficient expression of sfGFP and D-MIase proteins across 13 host strains, guided by EiL values. This customized-design method of HITES offers a streamlined pathway for T7 system construction across a broad range of hosts and serves as an enabling tool for synthetic biology, metabolic engineering, and enzyme engineering.
在合成生物学和代谢工程中,迫切需要有效的方法和通用的DNA元件来表达蛋白质和生产目标化学物质。本文提出了一种利用宿主无关T7表达系统(HITES)的定制化设计方法,有利于T7表达系统的合理设计和快速构建。首先,发现初始酶活性上限(Upper-limit value of initial enzyme activity, EiL)值是T7表达体系成功构建的关键因素,不同的寄主菌株具有不同的EiL值,本研究提出了EiL值的测量方法。其次,选择大肠杆菌DH5α作为宿主菌株,结果表明,在EiL的引导下,通过多种调控T7 RNA聚合酶活性的策略,可以有效构建大肠杆菌DH5α中HITES T7的表达体系。最后,HITES的定制设计使sfGFP和D-MIase蛋白能够在13个宿主菌株中以EiL值为指导进行高效表达。HITES的这种定制设计方法为T7系统在广泛宿主中的构建提供了简化的途径,并可作为合成生物学、代谢工程和酶工程的支持工具。
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引用次数: 0
Engineering an Escherichia coli surface display platform based on an autotransporter from Stenotrophomonas maltophilia: Autodisplay of enzymes with low to high molecular weight 基于嗜麦芽寡养单胞菌的自转运体构建大肠杆菌表面展示平台:低分子量到高分子量酶的自动展示。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.jbiotec.2024.12.003
Kunpeng Gao , Kexin Yu , Jianan Sun , Xiangzhao Mao , Hao Dong
Surface display technology has garnered significant attention for preparing efficient whole cell catalysts, while reported carrier proteins still cannot meet the demand to display various passenger domains, especially for those with high molecular weight. This study demonstrates that the autotransporter of esterase Est7 (E7AT) from Stenotrophomonas maltophilia played a decisive role in its efficient surface display. Guided by the original signal peptide, the surface display ratio of Est7 was determined as 89.67 % with the total enzymatic activity of 16.67 U/mL, which was much higher than 4.60 U/mL and 5.70 U/mL for the signal peptides derived from pectolase B (pelB) and cholera toxin B (ctxB), respectively. Then, the E7AT unit was successfully developed to surface display proteins with varying molecular weight from 19.3 kDa to 117.9 kDa, showing a more effective autodisplay ability than adhesin involved in diffuse adherence (AIDA-I), ice nucleation proteins (InaK and InaP), and outer membrane proteins (lipoprotein/ompA, MltA-interacting protein A, and yiaT) systems. Additionally, a galactosidase (GAL) displayed by E7AT was employed to hydrolyze lactose, achieving a promising hydrolysis rate of 31.63 % in 2 h. The displayed GAL retained 63.24 % and 41.41 % activity in third and sixth batch, respectively, indicating the considerable potential of E7AT in developing efficient whole cell catalysts.
表面显示技术在制备高效的全细胞催化剂方面得到了广泛的关注,而目前已有的载体蛋白仍不能满足显示各种乘客结构域的需求,特别是那些具有高分子量的乘客结构域。本研究表明,嗜麦芽窄养单胞菌酯酶Est7 (E7AT)的自转运体在其高效的表面展示中起着决定性作用。在原始信号肽的引导下,测定了Est7的表面显示率为89.67%,总酶活性为16.67U/mL,远高于pectolase B (pelB)和霍乱毒素B (ctxB)衍生的信号肽的4.60U/mL和5.70U/mL。然后,E7AT单元被成功开发用于表面显示从19.3kDa到117.9kDa的不同分子量的蛋白质,显示出比参与弥散粘附(AIDA-I),冰核蛋白(InaK和InaP)和外膜蛋白(脂蛋白/ompA, mlta相互作用蛋白a和yiaT)系统的粘附素更有效的自动显示能力。此外,利用E7AT显示的半乳糖苷酶(GAL)水解乳糖,在2小时内实现了31.63%的水解率。所示的GAL在第三批和第六批分别保持了63.24%和41.41%的活性,表明E7AT在开发高效全细胞催化剂方面具有相当大的潜力。
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引用次数: 0
Development of an advanced acetaldehyde detection solution based on yeast and bacterial surface display technology 基于酵母和细菌表面显示技术的先进乙醛检测溶液的开发。
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.jbiotec.2024.11.020
Weigeng Liu, Jiamin Cao, Di Wu, Yue Wu, Yi Qin, Yanlin Liu, Xixi Zhao, Yuyang Song
Acetaldehyde, a carcinogen widely present in various beverages and the natural environment, necessitates convenient and efficient detection methods. In this work, two different host strains were used to develop a sensitive, convenient, and efficient whole-cell optical biosensor for acetaldehyde detection. Acetaldehyde dehydrogenase (AldH) was displayed on the cell surface of Saccharomyces cerevisiae and E. coli using flocculin protein and the N-terminal ice nucleation protein (INP), respectively. The successful construction of yeast and bacteria surface display platforms was confirmed by laser scanning confocal microscopy. Then, the optimal AldH-display system for yeast and bacteria was confirmed. The optimum reaction conditions were determined by changing testing temperatures and pH values. The differences between the two display systems were compared. The highest whole-cell activities of yeast and bacteria under optimal conditions were 3.68 ± 0.07 U/mL/OD600 for BY-S6G and 6.95 ± 0.04 U/mL/OD600 for E-32-IrA. The strains with the best performance were chosen for the detection of acetaldehyde in wine and other beverage samples and showed substrate specificity and accuracy, in which the recovery rate ranged between 94.4 % and 110.1 %. The results demonstrated that the AldH surface display strains could be used as an optical biosensor to detect acetaldehyde in beverages and red wine.
乙醛是一种广泛存在于各种饮料和自然环境中的致癌物,需要方便高效的检测方法。在这项工作中,利用两种不同的宿主菌株开发了一种灵敏、方便、高效的全细胞光学生物传感器,用于乙醛检测。利用絮凝蛋白和n端冰核蛋白分别在酿酒酵母和大肠杆菌的细胞表面显示乙醛脱氢酶(AldH)。激光扫描共聚焦显微镜证实了酵母和细菌表面展示平台的成功构建。然后,确定了酵母和细菌的最佳aldh显示系统。通过改变实验温度和pH值确定最佳反应条件。比较了两种显示系统的差异。在最佳条件下,酵母和细菌的全细胞活性最高,BY-S6G为3.68±0.07U/mL/OD600, E-32-IrA为6.95±0.04U/mL/OD600。选择性能最好的菌株用于检测葡萄酒和其他饮料样品中的乙醛,具有底物特异性和准确性,回收率在94.4% ~ 110.1%之间。结果表明,AldH表面显示菌株可以作为一种光学生物传感器用于检测饮料和红酒中的乙醛。
{"title":"Development of an advanced acetaldehyde detection solution based on yeast and bacterial surface display technology","authors":"Weigeng Liu,&nbsp;Jiamin Cao,&nbsp;Di Wu,&nbsp;Yue Wu,&nbsp;Yi Qin,&nbsp;Yanlin Liu,&nbsp;Xixi Zhao,&nbsp;Yuyang Song","doi":"10.1016/j.jbiotec.2024.11.020","DOIUrl":"10.1016/j.jbiotec.2024.11.020","url":null,"abstract":"<div><div>Acetaldehyde, a carcinogen widely present in various beverages and the natural environment, necessitates convenient and efficient detection methods. In this work, two different host strains were used to develop a sensitive, convenient, and efficient whole-cell optical biosensor for acetaldehyde detection. Acetaldehyde dehydrogenase (AldH) was displayed on the cell surface of <em>Saccharomyces cerevisiae</em> and <em>E. coli</em> using flocculin protein and the N-terminal ice nucleation protein (INP), respectively. The successful construction of yeast and bacteria surface display platforms was confirmed by laser scanning confocal microscopy. Then, the optimal AldH-display system for yeast and bacteria was confirmed. The optimum reaction conditions were determined by changing testing temperatures and pH values. The differences between the two display systems were compared. The highest whole-cell activities of yeast and bacteria under optimal conditions were 3.68 ± 0.07 U/mL/OD<sub>600</sub> for BY-S6G and 6.95 ± 0.04 U/mL/OD<sub>600</sub> for E-32-I<sub>r</sub>A. The strains with the best performance were chosen for the detection of acetaldehyde in wine and other beverage samples and showed substrate specificity and accuracy, in which the recovery rate ranged between 94.4 % and 110.1 %. The results demonstrated that the AldH surface display strains could be used as an optical biosensor to detect acetaldehyde in beverages and red wine.</div></div>","PeriodicalId":15153,"journal":{"name":"Journal of biotechnology","volume":"398 ","pages":"Pages 42-50"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142769262","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An in vitro 3D spheroid model with liver steatosis and fibrosis on microwell arrays for drug efficacy evaluation
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-29 DOI: 10.1016/j.jbiotec.2025.01.019
Jiamin Chen , Ping Wang , Zhanpeng Li , Jieyi Wu , Fang Tang , Niao Yang , Bohong Cen , Cuiyin Xie , Yufan Yang , Ziyan Yang , Chuwen Zhang , Xiangcao Yao , Zhongyuan Xu
Metabolic dysfunction-associated steatotic liver disease (MASLD) is now the most common chronic liver disease worldwide, affecting more than 30 percent of adults. The most severe form of MASLD, metabolic dysfunction-associated steatohepatitis (MASH), is characterized by necrotizing inflammation and rapid fibrosis progression, often leading to cirrhosis and hepatocellular carcinoma. Currently, only Resmetirom is approved for the treatment of MASH one of the main reasons is the absence of representative in vivo or in vitro models for MASH. To address this challenge, we developed a high-throughput 3D spheroid model consisting of human hepatocellular carcinoma cells (HepG2) and human hepatic stellate cells (LX-2) on microwell arrays. This model, induced with free fatty acids (FFA) to simulate steatosis and fibrosis, enables the assessment of efficacy and mechanisms for potential anti-MASH drugs. Our findings demonstrate that this in vitro spheroid model replicates key pathological features of human MASLD, including steatosis, oxidative stress, and fibrosis. Upon validation, we selected pirfenidone (PFD) and yinfenidone (AC-003), which are commonly used to treat idiopathic pulmonary fibrosis (IPF), to test their anti-MASH efficacy. Treatment with these drugs showed that they could regulate lipid synthesis and metabolism genes, reduce lipid accumulation, oxidative stress, and fibrosis levels. This 3D spheroid model represents a straightforward and efficient tool for screening anti-MASH drugs and investigating the molecular mechanisms of drug action.
{"title":"An in vitro 3D spheroid model with liver steatosis and fibrosis on microwell arrays for drug efficacy evaluation","authors":"Jiamin Chen ,&nbsp;Ping Wang ,&nbsp;Zhanpeng Li ,&nbsp;Jieyi Wu ,&nbsp;Fang Tang ,&nbsp;Niao Yang ,&nbsp;Bohong Cen ,&nbsp;Cuiyin Xie ,&nbsp;Yufan Yang ,&nbsp;Ziyan Yang ,&nbsp;Chuwen Zhang ,&nbsp;Xiangcao Yao ,&nbsp;Zhongyuan Xu","doi":"10.1016/j.jbiotec.2025.01.019","DOIUrl":"10.1016/j.jbiotec.2025.01.019","url":null,"abstract":"<div><div>Metabolic dysfunction-associated steatotic liver disease (MASLD) is now the most common chronic liver disease worldwide, affecting more than 30 percent of adults. The most severe form of MASLD, metabolic dysfunction-associated steatohepatitis (MASH), is characterized by necrotizing inflammation and rapid fibrosis progression, often leading to cirrhosis and hepatocellular carcinoma. Currently, only Resmetirom is approved for the treatment of MASH one of the main reasons is the absence of representative in vivo or in vitro models for MASH. To address this challenge, we developed a high-throughput 3D spheroid model consisting of human hepatocellular carcinoma cells (HepG2) and human hepatic stellate cells (LX-2) on microwell arrays. This model, induced with free fatty acids (FFA) to simulate steatosis and fibrosis, enables the assessment of efficacy and mechanisms for potential anti-MASH drugs. Our findings demonstrate that this in vitro spheroid model replicates key pathological features of human MASLD, including steatosis, oxidative stress, and fibrosis. Upon validation, we selected pirfenidone (PFD) and yinfenidone (AC-003), which are commonly used to treat idiopathic pulmonary fibrosis (IPF), to test their anti-MASH efficacy. Treatment with these drugs showed that they could regulate lipid synthesis and metabolism genes, reduce lipid accumulation, oxidative stress, and fibrosis levels. This 3D spheroid model represents a straightforward and efficient tool for screening anti-MASH drugs and investigating the molecular mechanisms of drug action.</div></div>","PeriodicalId":15153,"journal":{"name":"Journal of biotechnology","volume":"399 ","pages":"Pages 153-163"},"PeriodicalIF":4.1,"publicationDate":"2025-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143074341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bifunctional chimeras of myeloperoxidase and glucose oxidase. Antimicrobial, topological and enzymatic properties
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-28 DOI: 10.1016/j.jbiotec.2025.01.018
Parfait Kenfack Ymbe , Claire Céré , Brigitte Delord , Gilles Pecastaings , Isabelle Ly , Aurélien Thureau , Laura Rodriguez , Zoran Ivanovic , Véronique Schmitt , Xavier Lafarge , Jean-Paul Chapel , Claire Stines-Chaumeil
Enhancing the local substrate concentration is a crucial strategy in nature for facilitating the proximity of two enzymes. The substrate of the first enzyme is transformed into a by-product that travels to the active site of the second enzyme without external diffusion, then transformed into a product and eventually expelled from the complex. In an effort to optimize the antimicrobial properties of myeloperoxidase from Rhodopirellula baltica (RbMPO), we created a library of fused chimeras between a glucose oxidase (GOx) and RbMPO so that H2O2 could be continuously perfused in the vicinity RbMPO, enabling the production of HOCl or HOSCN, well-known antimicrobial agents. The enzymes were characterized biochemically, enzymatically, and physically using low-resolution techniques such as AFM, SAXS, and cryofracture. SAXS experiments revealed that the chimeras were properly folded and existed in different oligomeric states. The kinetic parameters of the chimeras were determined and used for classification, revealing that all chimeras exhibited varying levels of activity and were microbicidal. The mixture of different oligomeric states of LEGGEAEA displayed both activity and microbicidal properties. AFM was used to visualize the chimeras in different oligomeric states, with their overall shapes ranging from round, oblong, to hooked, depending on the linker used.
{"title":"Bifunctional chimeras of myeloperoxidase and glucose oxidase. Antimicrobial, topological and enzymatic properties","authors":"Parfait Kenfack Ymbe ,&nbsp;Claire Céré ,&nbsp;Brigitte Delord ,&nbsp;Gilles Pecastaings ,&nbsp;Isabelle Ly ,&nbsp;Aurélien Thureau ,&nbsp;Laura Rodriguez ,&nbsp;Zoran Ivanovic ,&nbsp;Véronique Schmitt ,&nbsp;Xavier Lafarge ,&nbsp;Jean-Paul Chapel ,&nbsp;Claire Stines-Chaumeil","doi":"10.1016/j.jbiotec.2025.01.018","DOIUrl":"10.1016/j.jbiotec.2025.01.018","url":null,"abstract":"<div><div>Enhancing the local substrate concentration is a crucial strategy in nature for facilitating the proximity of two enzymes. The substrate of the first enzyme is transformed into a by-product that travels to the active site of the second enzyme without external diffusion, then transformed into a product and eventually expelled from the complex. In an effort to optimize the antimicrobial properties of myeloperoxidase from <em>Rhodopirellula baltica</em> (RbMPO), we created a library of fused chimeras between a glucose oxidase (GOx) and RbMPO so that H<sub>2</sub>O<sub>2</sub> could be continuously perfused in the vicinity RbMPO, enabling the production of HOCl or HOSCN, well-known antimicrobial agents. The enzymes were characterized biochemically, enzymatically, and physically using low-resolution techniques such as AFM, SAXS, and cryofracture. SAXS experiments revealed that the chimeras were properly folded and existed in different oligomeric states. The kinetic parameters of the chimeras were determined and used for classification, revealing that all chimeras exhibited varying levels of activity and were microbicidal. The mixture of different oligomeric states of LEGGEAEA displayed both activity and microbicidal properties. AFM was used to visualize the chimeras in different oligomeric states, with their overall shapes ranging from round, oblong, to hooked, depending on the linker used.</div></div>","PeriodicalId":15153,"journal":{"name":"Journal of biotechnology","volume":"399 ","pages":"Pages 127-140"},"PeriodicalIF":4.1,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143065881","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Efficient spermidine production using a multi-enzyme cascade system utilizing methionine adenosyltransferase from Lactobacillus fermentum with Reduced Product Inhibition and Acidic pH Preference
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-27 DOI: 10.1016/j.jbiotec.2025.01.016
Linbo Gou , Di Liu , Tai-ping Fan , Huaxiang Deng , Yujie Cai
Methionine adenosyltransferases (MATs; EC 2.5.1.6) are key enzymes that catalyze a crucial step in the spermidine biosynthesis pathway. Due to MAT's significant product inhibition, S-adenosylmethionine (SAM) and spermidine production faces challenges. We evaluated MATs from 20 lactic acid bacteria (LAB) to identify enzymes with acidic preference and lower susceptibility to product inhibition. Lactobacillus fermentum's MAT (LfMAT) emerged as a candidate with desirable characteristics. LfMAT exhibited strong activity in acidic environments, maintaining over 85 % activity between pH 6.0–8.5 for 60 min, with peak efficacy at pH 7.0. LfMAT produced 4.2 mM SAM from 5 mM substrate, indicating reduced product inhibition. Ultimately, using an in vitro multi-enzyme cascade system containing LfMAT, S-adenosylmethionine decarboxylase, and spermidine synthase, we successfully produced 12.9 g·L−1 of spermidine. This study establishes a cascade reaction platform, offering a novel approach for the efficient synthesis of spermidine and other polyamines.
{"title":"Efficient spermidine production using a multi-enzyme cascade system utilizing methionine adenosyltransferase from Lactobacillus fermentum with Reduced Product Inhibition and Acidic pH Preference","authors":"Linbo Gou ,&nbsp;Di Liu ,&nbsp;Tai-ping Fan ,&nbsp;Huaxiang Deng ,&nbsp;Yujie Cai","doi":"10.1016/j.jbiotec.2025.01.016","DOIUrl":"10.1016/j.jbiotec.2025.01.016","url":null,"abstract":"<div><div>Methionine adenosyltransferases (MATs; EC 2.5.1.6) are key enzymes that catalyze a crucial step in the spermidine biosynthesis pathway. Due to MAT's significant product inhibition, S-adenosylmethionine (SAM) and spermidine production faces challenges. We evaluated MATs from 20 lactic acid bacteria (LAB) to identify enzymes with acidic preference and lower susceptibility to product inhibition. <em>Lactobacillus fermentum</em>'s MAT (LfMAT) emerged as a candidate with desirable characteristics. LfMAT exhibited strong activity in acidic environments, maintaining over 85 % activity between pH 6.0–8.5 for 60 min, with peak efficacy at pH 7.0. LfMAT produced 4.2 mM SAM from 5 mM substrate, indicating reduced product inhibition. Ultimately, using an <em>in vitro</em> multi-enzyme cascade system containing LfMAT, S-adenosylmethionine decarboxylase, and spermidine synthase, we successfully produced 12.9 g·L<sup>−1</sup> of spermidine. This study establishes a cascade reaction platform, offering a novel approach for the efficient synthesis of spermidine and other polyamines.</div></div>","PeriodicalId":15153,"journal":{"name":"Journal of biotechnology","volume":"399 ","pages":"Pages 141-152"},"PeriodicalIF":4.1,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143046730","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhanced methanol-xylose co-utilization strategy in Komagataella phaffii
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-26 DOI: 10.1016/j.jbiotec.2025.01.017
Kang Li , Shaojie Yang , Tengfei Wang , Chunjun Zhan , Zhonghu Bai , Yankun Yang
Bio-manufacturing based on non-food carbon sources is conducive to alleviating the global food crisis and greenhouse effect. However, the mechanism of the utilization of methanol and xylose in Komagataella phaffii based on endogenous metabolic pathways has not been fully explored. In this study, transcriptomics revealed a positive correlation between methanol metabolic efficiency and the transcription level of genes related to xylose metabolism and phosphate metabolism. By providing sufficient phosphate to the strain, the methanol utilization rate of the Komagataella phaffii GA01 strain was improved, and the final biomass reached 7.5 g DCW/L. Metabolomics further confirmed that methanol could effectively activate xylose metabolism of the strain, and the consumption rates of methanol and xylose of the Komagataella phaffii GA01 strain could reach 3.87 g/L/d and 1.83 g/L/d, which were 34 % and 357.5 % higher than that of the wild-type strain, respectively. This study further promotes the application of methanol and xylose in microbial fermentation.
{"title":"Enhanced methanol-xylose co-utilization strategy in Komagataella phaffii","authors":"Kang Li ,&nbsp;Shaojie Yang ,&nbsp;Tengfei Wang ,&nbsp;Chunjun Zhan ,&nbsp;Zhonghu Bai ,&nbsp;Yankun Yang","doi":"10.1016/j.jbiotec.2025.01.017","DOIUrl":"10.1016/j.jbiotec.2025.01.017","url":null,"abstract":"<div><div>Bio-manufacturing based on non-food carbon sources is conducive to alleviating the global food crisis and greenhouse effect. However, the mechanism of the utilization of methanol and xylose in <em>Komagataella phaffii</em> based on endogenous metabolic pathways has not been fully explored. In this study, transcriptomics revealed a positive correlation between methanol metabolic efficiency and the transcription level of genes related to xylose metabolism and phosphate metabolism. By providing sufficient phosphate to the strain, the methanol utilization rate of the <em>Komagataella phaffii</em> GA01 strain was improved, and the final biomass reached 7.5 g DCW/L. Metabolomics further confirmed that methanol could effectively activate xylose metabolism of the strain, and the consumption rates of methanol and xylose of the <em>Komagataella phaffii</em> GA01 strain could reach 3.87 g/L/d and 1.83 g/L/d, which were 34 % and 357.5 % higher than that of the wild-type strain, respectively. This study further promotes the application of methanol and xylose in microbial fermentation.</div></div>","PeriodicalId":15153,"journal":{"name":"Journal of biotechnology","volume":"399 ","pages":"Pages 117-126"},"PeriodicalIF":4.1,"publicationDate":"2025-01-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143059120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Construction and characterization of a mutant library for the P23 constitutive promoter in lactic acid bacteria
IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-21 DOI: 10.1016/j.jbiotec.2025.01.015
Linbing Yu , Xin Song , Guangqiang Wang , Yongjun Xia , Zibo Song , Gong Chen , Lianzhong Ai , Zhiqiang Xiong
Promoters are crucial elements for controlling gene expression in cells, yet lactic acid bacteria (LAB) often lack a diverse set of available constitutive promoters with quantitative characterization. To enrich the LAB promoter library, this study focused on the known strong constitutive promoter P23 in LAB. Through error-prone PCR and dNTP analog-induced random mutagenesis, a library of 247 mutants of P23 was generated by using the red fluorescent protein (RFP) fluorescence intensity as a high-throughput screening indicator in Streptococcus thermophilus. The activity of P23 mutants varied from 0.01 to 3.63 times that of P23. Similar trends of promoter strength were observed in Lactobacillus plantarum and Lactococcus lactis, but significant differences in Escherichia coli, indicating the library's specificity to LAB. To assess the application potential of this P23 library, seven promoters with different strengths (0.28–2.58) were selected. The mutant promoters significantly enhanced the enzyme activities of superoxide dismutase (SOD), β-glucuronidase (GusA), and β-galactosidase (β-gal) in S. thermophilus. Notably, the mutant P23–203 expressing SOD exhibited an enzyme activity of 382.9 U/mg, which was 1.65 times higher than the control (P23). Similarly, the expression of GusA and β-gal were 1.82 and 1.28 times higher than those of P23, respectively. This study provided a set of significantly different P23 constitutive promoter mutant elements for the first time, laying the foundation for metabolic engineering and synthetic biology applications in LAB.
{"title":"Construction and characterization of a mutant library for the P23 constitutive promoter in lactic acid bacteria","authors":"Linbing Yu ,&nbsp;Xin Song ,&nbsp;Guangqiang Wang ,&nbsp;Yongjun Xia ,&nbsp;Zibo Song ,&nbsp;Gong Chen ,&nbsp;Lianzhong Ai ,&nbsp;Zhiqiang Xiong","doi":"10.1016/j.jbiotec.2025.01.015","DOIUrl":"10.1016/j.jbiotec.2025.01.015","url":null,"abstract":"<div><div>Promoters are crucial elements for controlling gene expression in cells, yet lactic acid bacteria (LAB) often lack a diverse set of available constitutive promoters with quantitative characterization. To enrich the LAB promoter library, this study focused on the known strong constitutive promoter P<sub>23</sub> in LAB. Through error-prone PCR and dNTP analog-induced random mutagenesis, a library of 247 mutants of P<sub>23</sub> was generated by using the red fluorescent protein (RFP) fluorescence intensity as a high-throughput screening indicator in <em>Streptococcus thermophilus</em>. The activity of P<sub>23</sub> mutants varied from 0.01 to 3.63 times that of P<sub>23</sub>. Similar trends of promoter strength were observed in <em>Lactobacillus plantarum</em> and <em>Lactococcus lactis</em>, but significant differences in <em>Escherichia coli</em>, indicating the library's specificity to LAB. To assess the application potential of this P<sub>23</sub> library, seven promoters with different strengths (0.28–2.58) were selected. The mutant promoters significantly enhanced the enzyme activities of superoxide dismutase (SOD), β-glucuronidase (GusA), and β-galactosidase (β-gal) in <em>S. thermophilus</em>. Notably, the mutant P<sub>23–203</sub> expressing SOD exhibited an enzyme activity of 382.9 U/mg, which was 1.65 times higher than the control (P<sub>23</sub>). Similarly, the expression of GusA and β-gal were 1.82 and 1.28 times higher than those of P<sub>23</sub>, respectively. This study provided a set of significantly different P<sub>23</sub> constitutive promoter mutant elements for the first time, laying the foundation for metabolic engineering and synthetic biology applications in LAB.</div></div>","PeriodicalId":15153,"journal":{"name":"Journal of biotechnology","volume":"399 ","pages":"Pages 99-107"},"PeriodicalIF":4.1,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143028708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of biotechnology
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