首页 > 最新文献

Journal of Biomedical Science最新文献

英文 中文
Plectin plays a role in the migration and volume regulation of astrocytes: a potential biomarker of glioblastoma. Plectin 在星形胶质细胞的迁移和体积调节中发挥作用:胶质母细胞瘤的潜在生物标志物。
IF 9 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-23 DOI: 10.1186/s12929-024-01002-z
Maja Žugec, Borut Furlani, Maria J Castañon, Boštjan Rituper, Irmgard Fischer, Giuseppe Broggi, Rosario Caltabiano, Giuseppe M V Barbagallo, Michelino Di Rosa, Daniele Tibullo, Rosalba Parenti, Nunzio Vicario, Saša Simčič, Victorio Martin Pozo Devoto, Gorazd B Stokin, Gerhard Wiche, Jernej Jorgačevski, Robert Zorec, Maja Potokar

Background: The expression of aquaporin 4 (AQP4) and intermediate filament (IF) proteins is altered in malignant glioblastoma (GBM), yet the expression of the major IF-based cytolinker, plectin (PLEC), and its contribution to GBM migration and invasiveness, are unknown. Here, we assessed the contribution of plectin in affecting the distribution of plasmalemmal AQP4 aggregates, migratory properties, and regulation of cell volume in astrocytes.

Methods: In human GBM, the expression of glial fibrillary acidic protein (GFAP), AQP4 and PLEC transcripts was analyzed using publicly available datasets, and the colocalization of PLEC with AQP4 and with GFAP was determined by immunohistochemistry. We performed experiments on wild-type and plectin-deficient primary and immortalized mouse astrocytes, human astrocytes and permanent cell lines (U-251 MG and T98G) derived from a human malignant GBM. The expression of plectin isoforms in mouse astrocytes was assessed by quantitative real-time PCR. Transfection, immunolabeling and confocal microscopy were used to assess plectin-induced alterations in the distribution of the cytoskeleton, the influence of plectin and its isoforms on the abundance and size of plasmalemmal AQP4 aggregates, and the presence of plectin at the plasma membrane. The release of plectin from cells was measured by ELISA. The migration and dynamics of cell volume regulation of immortalized astrocytes were assessed by the wound-healing assay and calcein labeling, respectively.

Results: A positive correlation was found between plectin and AQP4 at the level of gene expression and protein localization in tumorous brain samples. Deficiency of plectin led to a decrease in the abundance and size of plasmalemmal AQP4 aggregates and altered distribution and bundling of the cytoskeleton. Astrocytes predominantly expressed P1c, P1e, and P1g plectin isoforms. The predominant plectin isoform associated with plasmalemmal AQP4 aggregates was P1c, which also affected the mobility of astrocytes most prominently. In the absence of plectin, the collective migration of astrocytes was impaired and the dynamics of cytoplasmic volume changes in peripheral cell regions decreased. Plectin's abundance on the plasma membrane surface and its release from cells were increased in the GBM cell lines.

Conclusions: Plectin affects cellular properties that contribute to the pathology of GBM. The observed increase in both cell surface and released plectin levels represents a potential biomarker and therapeutic target in the diagnostics and treatment of GBMs.

背景:在恶性胶质母细胞瘤(GBM)中,水通道蛋白4(AQP4)和中间丝蛋白(IF)的表达发生了改变,但基于IF的主要细胞连接蛋白plectin(PLEC)的表达及其对GBM迁移和侵袭性的贡献尚不清楚。在此,我们评估了 Plectin 在影响星形胶质细胞质膜 AQP4 聚集分布、迁移特性和细胞体积调节方面的贡献:方法:利用公开数据集分析了人GBM中胶质纤维酸性蛋白(GFAP)、AQP4和PLEC转录本的表达,并通过免疫组化确定了PLEC与AQP4和GFAP的共定位。我们在野生型和 plectin 缺失型原代和永生化小鼠星形胶质细胞、人类星形胶质细胞和源自人类恶性 GBM 的永久细胞系(U-251 MG 和 T98G)上进行了实验。小鼠星形胶质细胞中 plectin 同工酶的表达通过实时定量 PCR 进行评估。转染、免疫标记和共聚焦显微镜被用来评估 plectin 诱导的细胞骨架分布的改变、plectin 及其异构体对质膜 AQP4 聚集体的丰度和大小的影响以及质膜上 plectin 的存在。用酶联免疫吸附法测定了细胞中plectin的释放。伤口愈合试验和钙黄绿素标记法分别评估了永生化星形胶质细胞的迁移和细胞体积的动态调节:结果:在肿瘤脑样本中,plectin和AQP4在基因表达和蛋白定位水平上呈正相关。缺乏 plectin 会导致质膜 AQP4 聚集体的丰度和大小下降,并改变细胞骨架的分布和捆绑。星形胶质细胞主要表达 P1c、P1e 和 P1g plectin 异构体。与浆膜 AQP4 聚集相关的主要 plectin 异构体是 P1c,它也对星形胶质细胞的流动性产生了最显著的影响。在缺乏 Plectin 的情况下,星形胶质细胞的集体迁移会受到影响,外围细胞区域的细胞质体积动态变化也会减弱。在 GBM 细胞系中,Plectin 在质膜表面的丰度及其从细胞中的释放均有所增加:结论:Plectin会影响细胞特性,从而导致GBM的病理变化。观察到的细胞表面和释放的 Plectin 水平的增加是诊断和治疗 GBM 的潜在生物标志物和治疗靶点。
{"title":"Plectin plays a role in the migration and volume regulation of astrocytes: a potential biomarker of glioblastoma.","authors":"Maja Žugec, Borut Furlani, Maria J Castañon, Boštjan Rituper, Irmgard Fischer, Giuseppe Broggi, Rosario Caltabiano, Giuseppe M V Barbagallo, Michelino Di Rosa, Daniele Tibullo, Rosalba Parenti, Nunzio Vicario, Saša Simčič, Victorio Martin Pozo Devoto, Gorazd B Stokin, Gerhard Wiche, Jernej Jorgačevski, Robert Zorec, Maja Potokar","doi":"10.1186/s12929-024-01002-z","DOIUrl":"10.1186/s12929-024-01002-z","url":null,"abstract":"<p><strong>Background: </strong>The expression of aquaporin 4 (AQP4) and intermediate filament (IF) proteins is altered in malignant glioblastoma (GBM), yet the expression of the major IF-based cytolinker, plectin (PLEC), and its contribution to GBM migration and invasiveness, are unknown. Here, we assessed the contribution of plectin in affecting the distribution of plasmalemmal AQP4 aggregates, migratory properties, and regulation of cell volume in astrocytes.</p><p><strong>Methods: </strong>In human GBM, the expression of glial fibrillary acidic protein (GFAP), AQP4 and PLEC transcripts was analyzed using publicly available datasets, and the colocalization of PLEC with AQP4 and with GFAP was determined by immunohistochemistry. We performed experiments on wild-type and plectin-deficient primary and immortalized mouse astrocytes, human astrocytes and permanent cell lines (U-251 MG and T98G) derived from a human malignant GBM. The expression of plectin isoforms in mouse astrocytes was assessed by quantitative real-time PCR. Transfection, immunolabeling and confocal microscopy were used to assess plectin-induced alterations in the distribution of the cytoskeleton, the influence of plectin and its isoforms on the abundance and size of plasmalemmal AQP4 aggregates, and the presence of plectin at the plasma membrane. The release of plectin from cells was measured by ELISA. The migration and dynamics of cell volume regulation of immortalized astrocytes were assessed by the wound-healing assay and calcein labeling, respectively.</p><p><strong>Results: </strong>A positive correlation was found between plectin and AQP4 at the level of gene expression and protein localization in tumorous brain samples. Deficiency of plectin led to a decrease in the abundance and size of plasmalemmal AQP4 aggregates and altered distribution and bundling of the cytoskeleton. Astrocytes predominantly expressed P1c, P1e, and P1g plectin isoforms. The predominant plectin isoform associated with plasmalemmal AQP4 aggregates was P1c, which also affected the mobility of astrocytes most prominently. In the absence of plectin, the collective migration of astrocytes was impaired and the dynamics of cytoplasmic volume changes in peripheral cell regions decreased. Plectin's abundance on the plasma membrane surface and its release from cells were increased in the GBM cell lines.</p><p><strong>Conclusions: </strong>Plectin affects cellular properties that contribute to the pathology of GBM. The observed increase in both cell surface and released plectin levels represents a potential biomarker and therapeutic target in the diagnostics and treatment of GBMs.</p>","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"31 1","pages":"14"},"PeriodicalIF":9.0,"publicationDate":"2024-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10807171/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139541785","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Physiology and pharmacological targeting of phase separation 相分离的生理学和药理学目标
IF 11 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-20 DOI: 10.1186/s12929-024-00993-z
Fangfang Wang, Youwei Zhang
Liquid–liquid phase separation (LLPS) in biology describes a process by which proteins form membraneless condensates within a cellular compartment when conditions are met, including the concentration and posttranslational modifications of the protein components, the condition of the aqueous solution (pH, ionic strength, pressure, and temperature), and the existence of assisting factors (such as RNAs or other proteins). In these supramolecular liquid droplet-like inclusion bodies, molecules are held together through weak intermolecular and/or intramolecular interactions. With the aid of LLPS, cells can assemble functional sub-units within a given cellular compartment by enriching or excluding specific factors, modulating cellular function, and rapidly responding to environmental or physiological cues. Hence, LLPS is emerging as an important means to regulate biology and physiology. Yet, excessive inclusion body formation by, for instance, higher-than-normal concentrations or mutant forms of the protein components could result in the conversion from dynamic liquid condensates into more rigid gel- or solid-like aggregates, leading to the disruption of the organelle’s function followed by the development of human disorders like neurodegenerative diseases. In summary, well-controlled formation and de-formation of LLPS is critical for normal biology and physiology from single cells to individual organisms, whereas abnormal LLPS is involved in the pathophysiology of human diseases. In turn, targeting these aggregates or their formation represents a promising approach in treating diseases driven by abnormal LLPS including those neurodegenerative diseases that lack effective therapies.
生物学中的液-液相分离(LLPS)描述了蛋白质在满足条件(包括蛋白质成分的浓度和翻译后修饰、水溶液的条件(pH 值、离子强度、压力和温度)以及辅助因子(如 RNA 或其他蛋白质)的存在)的情况下在细胞内形成无膜凝聚体的过程。在这些超分子液滴状包涵体中,分子通过微弱的分子间和/或分子内相互作用结合在一起。在 LLPS 的帮助下,细胞可以通过富集或排除特定因子,在给定的细胞区室中组装功能性亚单位,调节细胞功能,并对环境或生理线索做出快速反应。因此,LLPS 正在成为调节生物学和生理学的重要手段。然而,由于蛋白质成分浓度高于正常水平或出现突变等原因而形成的过度包涵体可能会导致动态液态凝结物转变为更坚硬的凝胶或固态聚集体,从而导致细胞器功能紊乱,继而引发神经退行性疾病等人类疾病。总之,良好控制 LLPS 的形成和去形成对于从单细胞到单个生物体的正常生物学和生理学至关重要,而异常 LLPS 则与人类疾病的病理生理学有关。反过来,针对这些聚集体或其形成是治疗由异常 LLPS 驱动的疾病(包括那些缺乏有效疗法的神经退行性疾病)的一种很有前景的方法。
{"title":"Physiology and pharmacological targeting of phase separation","authors":"Fangfang Wang, Youwei Zhang","doi":"10.1186/s12929-024-00993-z","DOIUrl":"https://doi.org/10.1186/s12929-024-00993-z","url":null,"abstract":"Liquid–liquid phase separation (LLPS) in biology describes a process by which proteins form membraneless condensates within a cellular compartment when conditions are met, including the concentration and posttranslational modifications of the protein components, the condition of the aqueous solution (pH, ionic strength, pressure, and temperature), and the existence of assisting factors (such as RNAs or other proteins). In these supramolecular liquid droplet-like inclusion bodies, molecules are held together through weak intermolecular and/or intramolecular interactions. With the aid of LLPS, cells can assemble functional sub-units within a given cellular compartment by enriching or excluding specific factors, modulating cellular function, and rapidly responding to environmental or physiological cues. Hence, LLPS is emerging as an important means to regulate biology and physiology. Yet, excessive inclusion body formation by, for instance, higher-than-normal concentrations or mutant forms of the protein components could result in the conversion from dynamic liquid condensates into more rigid gel- or solid-like aggregates, leading to the disruption of the organelle’s function followed by the development of human disorders like neurodegenerative diseases. In summary, well-controlled formation and de-formation of LLPS is critical for normal biology and physiology from single cells to individual organisms, whereas abnormal LLPS is involved in the pathophysiology of human diseases. In turn, targeting these aggregates or their formation represents a promising approach in treating diseases driven by abnormal LLPS including those neurodegenerative diseases that lack effective therapies.","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"15 1","pages":""},"PeriodicalIF":11.0,"publicationDate":"2024-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139510076","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Inactivation of pentraxin 3 suppresses M2-like macrophage activity and immunosuppression in colon cancer. 五肽 3 失活可抑制结肠癌中 M2 样巨噬细胞的活性和免疫抑制。
IF 11 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-20 DOI: 10.1186/s12929-023-00991-7
Feng-Wei Chen, Yung-Ling Wu, Chao-Chun Cheng, Yu-Wei Hsiao, Jhih-Ying Chi, Liang-Yi Hung, Chih-Peng Chang, Ming-Derg Lai, Ju-Ming Wang

Background: The tumor microenvironment is characterized by inflammation-like and immunosuppression situations. Although cancer-associated fibroblasts (CAFs) are among the major stromal cell types in various solid cancers, including colon cancer, the interactions between CAFs and immune cells remains largely uncharacterized. Pentraxin 3 (PTX3) is responsive to proinflammatory cytokines and modulates immunity and tissue remodeling, but its involvement in tumor progression appears to be context-dependent and is unclear.

Methods: Open-access databases were utilized to examine the association of PTX3 expression and the fibroblast signature in colon cancer. Loss-of-function assays, including studies in tamoxifen-induced Ptx3 knockout mice and treatment with an anti-PTX3 neutralizing antibody (WHC-001), were conducted to assess the involvement of PTX3 in colon cancer progression as well as its immunosuppressive effect. Finally, bioinformatic analyses and in vitro assays were performed to reveal the downstream effectors and decipher the involvement of the CREB1/CEBPB axis in response to PTX3 and PTX3-induced promotion of M2 macrophage polarization.

Results: Clinically, higher PTX3 expression was positively correlated with fibroblasts and inflammatory response signatures and associated with a poor survival outcome in colon cancer patients. Blockade of PTX3 significantly reduced stromal cell-mediated tumor development. The decrease of the M2 macrophage population and an increase of the cytotoxic CD8+ T-cell population were observed following PTX3 inactivation in allografted colon tumors. We further revealed that activation of cyclic AMP-responsive element-binding protein 1 (CREB1) mediated the PTX3-induced promotion of M2 macrophage polarization.

Conclusions: PTX3 contributes to stromal cell-mediated protumor immunity by increasing M2-like macrophage polarization, and inhibition of PTX3 with WHC-001 is a potential therapeutic strategy for colon cancer.

背景:肿瘤微环境的特点是炎症样和免疫抑制情况。尽管癌相关成纤维细胞(CAFs)是包括结肠癌在内的各种实体瘤的主要基质细胞类型之一,但CAFs与免疫细胞之间的相互作用在很大程度上仍未得到表征。五胜肽 3(Pentraxin 3,PTX3)对促炎细胞因子有反应,并能调节免疫和组织重塑,但它在肿瘤进展中的参与似乎取决于具体情况,目前尚不清楚:方法:我们利用开放存取的数据库研究了结肠癌中 PTX3 表达与成纤维细胞特征的关联。进行了功能缺失试验,包括他莫昔芬诱导的 Ptx3 基因敲除小鼠研究和抗 PTX3 中和抗体(WHC-001)治疗,以评估 PTX3 参与结肠癌进展的情况及其免疫抑制作用。最后,研究人员进行了生物信息学分析和体外实验,以揭示PTX3的下游效应因子,并解读CREB1/CEBPB轴参与PTX3反应和PTX3诱导的M2巨噬细胞极化促进作用:在临床上,PTX3的高表达与成纤维细胞和炎症反应特征呈正相关,并与结肠癌患者的不良生存结果有关。阻断 PTX3 能明显减少基质细胞介导的肿瘤发生。在异体移植的结肠肿瘤中,观察到 PTX3 失活后 M2 巨噬细胞数量减少,细胞毒性 CD8+ T 细胞数量增加。我们进一步发现,环磷酸腺苷反应元件结合蛋白1(CREB1)的激活介导了PTX3诱导的M2巨噬细胞极化的促进作用:结论:PTX3通过增加M2样巨噬细胞的极化来促进基质细胞介导的原肿瘤免疫,用WHC-001抑制PTX3是一种潜在的结肠癌治疗策略。
{"title":"Inactivation of pentraxin 3 suppresses M2-like macrophage activity and immunosuppression in colon cancer.","authors":"Feng-Wei Chen, Yung-Ling Wu, Chao-Chun Cheng, Yu-Wei Hsiao, Jhih-Ying Chi, Liang-Yi Hung, Chih-Peng Chang, Ming-Derg Lai, Ju-Ming Wang","doi":"10.1186/s12929-023-00991-7","DOIUrl":"10.1186/s12929-023-00991-7","url":null,"abstract":"<p><strong>Background: </strong>The tumor microenvironment is characterized by inflammation-like and immunosuppression situations. Although cancer-associated fibroblasts (CAFs) are among the major stromal cell types in various solid cancers, including colon cancer, the interactions between CAFs and immune cells remains largely uncharacterized. Pentraxin 3 (PTX3) is responsive to proinflammatory cytokines and modulates immunity and tissue remodeling, but its involvement in tumor progression appears to be context-dependent and is unclear.</p><p><strong>Methods: </strong>Open-access databases were utilized to examine the association of PTX3 expression and the fibroblast signature in colon cancer. Loss-of-function assays, including studies in tamoxifen-induced Ptx3 knockout mice and treatment with an anti-PTX3 neutralizing antibody (WHC-001), were conducted to assess the involvement of PTX3 in colon cancer progression as well as its immunosuppressive effect. Finally, bioinformatic analyses and in vitro assays were performed to reveal the downstream effectors and decipher the involvement of the CREB1/CEBPB axis in response to PTX3 and PTX3-induced promotion of M2 macrophage polarization.</p><p><strong>Results: </strong>Clinically, higher PTX3 expression was positively correlated with fibroblasts and inflammatory response signatures and associated with a poor survival outcome in colon cancer patients. Blockade of PTX3 significantly reduced stromal cell-mediated tumor development. The decrease of the M2 macrophage population and an increase of the cytotoxic CD8<sup>+</sup> T-cell population were observed following PTX3 inactivation in allografted colon tumors. We further revealed that activation of cyclic AMP-responsive element-binding protein 1 (CREB1) mediated the PTX3-induced promotion of M2 macrophage polarization.</p><p><strong>Conclusions: </strong>PTX3 contributes to stromal cell-mediated protumor immunity by increasing M2-like macrophage polarization, and inhibition of PTX3 with WHC-001 is a potential therapeutic strategy for colon cancer.</p>","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"31 1","pages":"10"},"PeriodicalIF":11.0,"publicationDate":"2024-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10799366/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139502481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineered EVs with pathogen proteins: promising vaccine alternatives to LNP-mRNA vaccines 含有病原体蛋白的工程电动体:有望替代 LNP-mRNA 疫苗的疫苗产品
IF 11 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-17 DOI: 10.1186/s12929-024-01000-1
Bin Zhang, Wei Kian Sim, Tang-Long Shen, Sai Kiang Lim
Extracellular vesicles (EVs) are tiny, lipid membrane-bound structures that are released by most cells. They play a vital role in facilitating intercellular communication by delivering bioactive cargoes to recipient cells and triggering cellular as well as biological responses. EVs have enormous potential for therapeutic applications as native or engineered exosomes. Native EVs are naturally released by cells without undergoing any modifications to either the exosomes or the cells that secrete them. In contrast, engineered EVs have been deliberately modified post-secretion or through genetic engineering of the secreting cells to alter their composition. Here we propose that engineered EVs displaying pathogen proteins could serve as promising alternatives to lipid nanoparticle (LNP)-mRNA vaccines. By leveraging their unique characteristics, these engineered EVs have the potential to overcome certain limitations associated with LNP-mRNA vaccines.
细胞外囊泡(EVs)是大多数细胞释放的微小脂质膜结合结构。它们通过向受体细胞输送生物活性货物并引发细胞和生物反应,在促进细胞间通信方面发挥着重要作用。作为原生或工程外泌体,EVs 具有巨大的治疗应用潜力。原生外泌体是由细胞自然释放的,外泌体或分泌外泌体的细胞都没有经过任何修饰。与此相反,工程外泌体则是在分泌后或通过分泌细胞的基因工程故意改变其成分。在这里,我们提出,显示病原体蛋白的工程外泌体可作为脂质纳米粒子(LNP)-mRNA 疫苗的理想替代品。通过利用其独特的特性,这些工程化 EV 有可能克服 LNP-mRNA 疫苗的某些局限性。
{"title":"Engineered EVs with pathogen proteins: promising vaccine alternatives to LNP-mRNA vaccines","authors":"Bin Zhang, Wei Kian Sim, Tang-Long Shen, Sai Kiang Lim","doi":"10.1186/s12929-024-01000-1","DOIUrl":"https://doi.org/10.1186/s12929-024-01000-1","url":null,"abstract":"Extracellular vesicles (EVs) are tiny, lipid membrane-bound structures that are released by most cells. They play a vital role in facilitating intercellular communication by delivering bioactive cargoes to recipient cells and triggering cellular as well as biological responses. EVs have enormous potential for therapeutic applications as native or engineered exosomes. Native EVs are naturally released by cells without undergoing any modifications to either the exosomes or the cells that secrete them. In contrast, engineered EVs have been deliberately modified post-secretion or through genetic engineering of the secreting cells to alter their composition. Here we propose that engineered EVs displaying pathogen proteins could serve as promising alternatives to lipid nanoparticle (LNP)-mRNA vaccines. By leveraging their unique characteristics, these engineered EVs have the potential to overcome certain limitations associated with LNP-mRNA vaccines.","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"27 1","pages":""},"PeriodicalIF":11.0,"publicationDate":"2024-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139483331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Attenuation of neurovirulence of chikungunya virus by a single amino acid mutation in viral E2 envelope protein. 病毒 E2 包膜蛋白中的一个氨基酸突变可减轻基孔肯雅病毒的神经毒性。
IF 11 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-17 DOI: 10.1186/s12929-024-00995-x
Huixin Chen, Patchara Phuektes, Li Sze Yeo, Yi Hao Wong, Regina Ching Hua Lee, Bowen Yi, Xinjun Hou, Sen Liu, Yu Cai, Justin Jang Hann Chu

Background: Chikungunya virus (CHIKV) has reemerged as a major public health concern, causing chikungunya fever with increasing cases and neurological complications.

Methods: In the present study, we investigated a low-passage human isolate of the East/ Central/South African (ECSA) lineage of CHIKV strain LK(EH)CH6708, which exhibited a mix of small and large viral plaques. The small and large plaque variants were isolated and designated as CHIKV-SP and CHIKV-BP, respectively. CHIKV-SP and CHIKV-BP were characterized in vitro and in vivo to compare their virus production and virulence. Additionally, whole viral genome analysis and reverse genetics were employed to identify genomic virulence factors.

Results: CHIKV-SP demonstrated lower virus production in mammalian cells and attenuated virulence in a murine model. On the other hand, CHIKV-BP induced higher pro-inflammatory cytokine levels, compromised the integrity of the blood-brain barrier, and led to astrocyte infection in mouse brains. Furthermore, the CHIKV-SP variant had limited transmission potential in Aedes albopictus mosquitoes, likely due to restricted dissemination. Whole viral genome analysis revealed multiple genetic mutations in the CHIKV-SP variant, including a Glycine (G) to Arginine (R) mutation at position 55 in the viral E2 glycoprotein. Reverse genetics experiments confirmed that the E2-G55R mutation alone was sufficient to reduce virus production in vitro and virulence in mice.

Conclusions: These findings highlight the attenuating effects of the E2-G55R mutation on CHIKV pathogenicity and neurovirulence and emphasize the importance of monitoring this mutation in natural infections.

背景:基孔肯雅病毒(CHIKV基孔肯雅病毒(CHIKV)已重新成为主要的公共卫生问题,它引起的基孔肯雅热病例和神经系统并发症不断增加:在本研究中,我们调查了基孔肯雅病毒东非/中非/南非(ECSA)系的一个低通过率人类分离株LK(EH)CH6708,该分离株表现出大小病毒斑的混合。小斑块和大斑块变种被分离出来,并分别命名为 CHIKV-SP 和 CHIKV-BP。对 CHIKV-SP 和 CHIKV-BP 进行了体外和体内鉴定,以比较它们的病毒生产和毒力。此外,还采用了全病毒基因组分析和反向遗传学方法来确定基因组毒力因子:结果:CHIKV-SP在哺乳动物细胞中的病毒产量较低,在小鼠模型中的毒力较弱。另一方面,CHIKV-BP 会诱发更高水平的促炎细胞因子,损害血脑屏障的完整性,并导致小鼠大脑中的星形胶质细胞感染。此外,CHIKV-SP变体在白纹伊蚊中的传播潜力有限,这可能是由于传播受限所致。全病毒基因组分析表明,CHIKV-SP变种存在多种基因突变,包括病毒E2糖蛋白第55位的甘氨酸(G)变为精氨酸(R)。反向遗传学实验证实,仅 E2-G55R 突变就足以减少病毒在体外的产生和在小鼠体内的毒力:这些发现强调了E2-G55R突变对CHIKV致病性和神经毒性的减弱作用,并强调了在自然感染中监测该突变的重要性。
{"title":"Attenuation of neurovirulence of chikungunya virus by a single amino acid mutation in viral E2 envelope protein.","authors":"Huixin Chen, Patchara Phuektes, Li Sze Yeo, Yi Hao Wong, Regina Ching Hua Lee, Bowen Yi, Xinjun Hou, Sen Liu, Yu Cai, Justin Jang Hann Chu","doi":"10.1186/s12929-024-00995-x","DOIUrl":"10.1186/s12929-024-00995-x","url":null,"abstract":"<p><strong>Background: </strong>Chikungunya virus (CHIKV) has reemerged as a major public health concern, causing chikungunya fever with increasing cases and neurological complications.</p><p><strong>Methods: </strong>In the present study, we investigated a low-passage human isolate of the East/ Central/South African (ECSA) lineage of CHIKV strain LK(EH)CH6708, which exhibited a mix of small and large viral plaques. The small and large plaque variants were isolated and designated as CHIKV-SP and CHIKV-BP, respectively. CHIKV-SP and CHIKV-BP were characterized in vitro and in vivo to compare their virus production and virulence. Additionally, whole viral genome analysis and reverse genetics were employed to identify genomic virulence factors.</p><p><strong>Results: </strong>CHIKV-SP demonstrated lower virus production in mammalian cells and attenuated virulence in a murine model. On the other hand, CHIKV-BP induced higher pro-inflammatory cytokine levels, compromised the integrity of the blood-brain barrier, and led to astrocyte infection in mouse brains. Furthermore, the CHIKV-SP variant had limited transmission potential in Aedes albopictus mosquitoes, likely due to restricted dissemination. Whole viral genome analysis revealed multiple genetic mutations in the CHIKV-SP variant, including a Glycine (G) to Arginine (R) mutation at position 55 in the viral E2 glycoprotein. Reverse genetics experiments confirmed that the E2-G55R mutation alone was sufficient to reduce virus production in vitro and virulence in mice.</p><p><strong>Conclusions: </strong>These findings highlight the attenuating effects of the E2-G55R mutation on CHIKV pathogenicity and neurovirulence and emphasize the importance of monitoring this mutation in natural infections.</p>","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"31 1","pages":"8"},"PeriodicalIF":11.0,"publicationDate":"2024-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10792792/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139478693","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Scaffold-based 3D cell culture models in cancer research 癌症研究中基于支架的三维细胞培养模型
IF 11 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-14 DOI: 10.1186/s12929-024-00994-y
Waad H. Abuwatfa, William G. Pitt, Ghaleb A. Husseini
Three-dimensional (3D) cell cultures have emerged as valuable tools in cancer research, offering significant advantages over traditional two-dimensional (2D) cell culture systems. In 3D cell cultures, cancer cells are grown in an environment that more closely mimics the 3D architecture and complexity of in vivo tumors. This approach has revolutionized cancer research by providing a more accurate representation of the tumor microenvironment (TME) and enabling the study of tumor behavior and response to therapies in a more physiologically relevant context. One of the key benefits of 3D cell culture in cancer research is the ability to recapitulate the complex interactions between cancer cells and their surrounding stroma. Tumors consist not only of cancer cells but also various other cell types, including stromal cells, immune cells, and blood vessels. These models bridge traditional 2D cell cultures and animal models, offering a cost-effective, scalable, and ethical alternative for preclinical research. As the field advances, 3D cell cultures are poised to play a pivotal role in understanding cancer biology and accelerating the development of effective anticancer therapies. This review article highlights the key advantages of 3D cell cultures, progress in the most common scaffold-based culturing techniques, pertinent literature on their applications in cancer research, and the ongoing challenges.
三维(3D)细胞培养已成为癌症研究的重要工具,与传统的二维(2D)细胞培养系统相比具有显著优势。在三维细胞培养中,癌细胞在更接近体内肿瘤的三维结构和复杂性的环境中生长。这种方法能更准确地呈现肿瘤微环境(TME),并能在更贴近生理的环境中研究肿瘤行为和对疗法的反应,从而彻底改变了癌症研究。三维细胞培养在癌症研究中的主要优势之一是能够再现癌细胞与其周围基质之间复杂的相互作用。肿瘤不仅由癌细胞组成,还包括基质细胞、免疫细胞和血管等其他各种细胞类型。这些模型在传统的二维细胞培养和动物模型之间架起了桥梁,为临床前研究提供了一种具有成本效益、可扩展且符合伦理道德的替代方法。随着该领域的发展,三维细胞培养将在理解癌症生物学和加速开发有效抗癌疗法方面发挥关键作用。这篇综述文章重点介绍了三维细胞培养的主要优势、最常见的基于支架的培养技术的进展、有关其在癌症研究中应用的相关文献以及当前面临的挑战。
{"title":"Scaffold-based 3D cell culture models in cancer research","authors":"Waad H. Abuwatfa, William G. Pitt, Ghaleb A. Husseini","doi":"10.1186/s12929-024-00994-y","DOIUrl":"https://doi.org/10.1186/s12929-024-00994-y","url":null,"abstract":"Three-dimensional (3D) cell cultures have emerged as valuable tools in cancer research, offering significant advantages over traditional two-dimensional (2D) cell culture systems. In 3D cell cultures, cancer cells are grown in an environment that more closely mimics the 3D architecture and complexity of in vivo tumors. This approach has revolutionized cancer research by providing a more accurate representation of the tumor microenvironment (TME) and enabling the study of tumor behavior and response to therapies in a more physiologically relevant context. One of the key benefits of 3D cell culture in cancer research is the ability to recapitulate the complex interactions between cancer cells and their surrounding stroma. Tumors consist not only of cancer cells but also various other cell types, including stromal cells, immune cells, and blood vessels. These models bridge traditional 2D cell cultures and animal models, offering a cost-effective, scalable, and ethical alternative for preclinical research. As the field advances, 3D cell cultures are poised to play a pivotal role in understanding cancer biology and accelerating the development of effective anticancer therapies. This review article highlights the key advantages of 3D cell cultures, progress in the most common scaffold-based culturing techniques, pertinent literature on their applications in cancer research, and the ongoing challenges. ","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"18 1","pages":""},"PeriodicalIF":11.0,"publicationDate":"2024-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139459874","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Immune evasion in cell-based immunotherapy: unraveling challenges and novel strategies. 基于细胞的免疫疗法中的免疫逃避:揭示挑战与新策略。
IF 11 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-12 DOI: 10.1186/s12929-024-00998-8
Yan-Ruide Li, Tyler Halladay, Lili Yang

Cell-based immunotherapies (CBIs), notably exemplified by chimeric antigen receptor (CAR)-engineered T (CAR-T) cell therapy, have emerged as groundbreaking approaches for cancer therapy. Nevertheless, akin to various other therapeutic modalities, tumor cells employ counterstrategies to manifest immune evasion, thereby circumventing the impact of CBIs. This phenomenon is facilitated by an intricately immunosuppression entrenched within the tumor microenvironment (TME). Principal mechanisms underpinning tumor immune evasion from CBIs encompass loss of antigens, downregulation of antigen presentation, activation of immune checkpoint pathways, initiation of anti-apoptotic cascades, and induction of immune dysfunction and exhaustion. In this review, we delve into the intrinsic mechanisms underlying the capacity of tumor cells to resist CBIs and proffer prospective stratagems to navigate around these challenges.

以细胞为基础的免疫疗法(CBIs),特别是嵌合抗原受体(CAR)工程T(CAR-T)细胞疗法,已成为癌症治疗的突破性方法。然而,与其他各种治疗方法一样,肿瘤细胞也会采取反策略来逃避免疫,从而规避CBIs的影响。肿瘤微环境(TME)中错综复杂的免疫抑制促进了这一现象的发生。肿瘤免疫逃避 CBIs 的主要机制包括抗原丢失、抗原递呈下调、免疫检查点通路激活、抗凋亡级联启动以及诱导免疫功能紊乱和衰竭。在这篇综述中,我们将深入探讨肿瘤细胞抵抗 CBI 的内在机制,并提出应对这些挑战的前瞻性策略。
{"title":"Immune evasion in cell-based immunotherapy: unraveling challenges and novel strategies.","authors":"Yan-Ruide Li, Tyler Halladay, Lili Yang","doi":"10.1186/s12929-024-00998-8","DOIUrl":"10.1186/s12929-024-00998-8","url":null,"abstract":"<p><p>Cell-based immunotherapies (CBIs), notably exemplified by chimeric antigen receptor (CAR)-engineered T (CAR-T) cell therapy, have emerged as groundbreaking approaches for cancer therapy. Nevertheless, akin to various other therapeutic modalities, tumor cells employ counterstrategies to manifest immune evasion, thereby circumventing the impact of CBIs. This phenomenon is facilitated by an intricately immunosuppression entrenched within the tumor microenvironment (TME). Principal mechanisms underpinning tumor immune evasion from CBIs encompass loss of antigens, downregulation of antigen presentation, activation of immune checkpoint pathways, initiation of anti-apoptotic cascades, and induction of immune dysfunction and exhaustion. In this review, we delve into the intrinsic mechanisms underlying the capacity of tumor cells to resist CBIs and proffer prospective stratagems to navigate around these challenges.</p>","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"31 1","pages":"5"},"PeriodicalIF":11.0,"publicationDate":"2024-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10785504/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139432515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Therapeutic antibodies for the prevention and treatment of cancer. 用于预防和治疗癌症的治疗性抗体。
IF 11 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-12 DOI: 10.1186/s12929-024-00996-w
Mukesh Kumar, Akansha Jalota, Sushil Kumar Sahu, Shabirul Haque

The developments of antibodies for cancer therapeutics have made remarkable success in recent years. There are multiple factors contributing to the success of the biological molecule including origin of the antibody, isotype, affinity, avidity and mechanism of action. With better understanding of mechanism of cancer progression and immune manipulation, recombinant formats of antibodies are used to develop therapeutic modalities for manipulating the immune cells of patients by targeting specific molecules to control the disease. These molecules have been successful in minimizing the side effects instead caused by small molecules or systemic chemotherapy but because of the developing therapeutic resistance against these antibodies, combination therapy is thought to be the best bet for patient care. Here, in this review, we have discussed different aspects of antibodies in cancer therapy affecting their efficacy and mechanism of resistance with some relevant examples of the most studied molecules approved by the US FDA.

近年来,用于癌症治疗的抗体研发取得了显著成就。导致生物分子成功的因素有很多,包括抗体的来源、同种型、亲和力、效价和作用机制。随着人们对癌症进展和免疫调节机制的深入了解,重组形式的抗体被用来开发治疗模式,通过靶向特定分子来操纵患者的免疫细胞,从而控制疾病。这些分子成功地减少了小分子药物或全身化疗带来的副作用,但由于对这些抗体的抗药性不断发展,联合疗法被认为是治疗病人的最佳选择。在这篇综述中,我们以美国 FDA 批准的研究最多的分子为例,讨论了抗体在癌症治疗中影响其疗效和抗药性机制的不同方面。
{"title":"Therapeutic antibodies for the prevention and treatment of cancer.","authors":"Mukesh Kumar, Akansha Jalota, Sushil Kumar Sahu, Shabirul Haque","doi":"10.1186/s12929-024-00996-w","DOIUrl":"10.1186/s12929-024-00996-w","url":null,"abstract":"<p><p>The developments of antibodies for cancer therapeutics have made remarkable success in recent years. There are multiple factors contributing to the success of the biological molecule including origin of the antibody, isotype, affinity, avidity and mechanism of action. With better understanding of mechanism of cancer progression and immune manipulation, recombinant formats of antibodies are used to develop therapeutic modalities for manipulating the immune cells of patients by targeting specific molecules to control the disease. These molecules have been successful in minimizing the side effects instead caused by small molecules or systemic chemotherapy but because of the developing therapeutic resistance against these antibodies, combination therapy is thought to be the best bet for patient care. Here, in this review, we have discussed different aspects of antibodies in cancer therapy affecting their efficacy and mechanism of resistance with some relevant examples of the most studied molecules approved by the US FDA.</p>","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"31 1","pages":"6"},"PeriodicalIF":11.0,"publicationDate":"2024-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10787459/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139432525","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the relationship between metabolism and immune microenvironment in osteosarcoma based on metabolic pathways. 基于代谢途径探索骨肉瘤代谢与免疫微环境之间的关系
IF 9 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-12 DOI: 10.1186/s12929-024-00999-7
Changwu Wu, Jun Tan, Hong Shen, Chao Deng, Christian Kleber, Georg Osterhoff, Nikolas Schopow

Background: Metabolic remodeling and changes in tumor immune microenvironment (TIME) in osteosarcoma are important factors affecting prognosis and treatment. However, the relationship between metabolism and TIME needs to be further explored.

Methods: RNA-Seq data and clinical information of 84 patients with osteosarcoma from the TARGET database and an independent cohort from the GEO database were included in this study. The activity of seven metabolic super-pathways and immune infiltration levels were inferred in osteosarcoma patients. Metabolism-related genes (MRGs) were identified and different metabolic clusters and MRG-related gene clusters were identified using unsupervised clustering. Then the TIME differences between the different clusters were compared. In addition, an MRGs-based risk model was constructed and the role of a key risk gene, ST3GAL4, in osteosarcoma cells was explored using molecular biological experiments.

Results: This study revealed four key metabolic pathways in osteosarcoma, with vitamin and cofactor metabolism being the most relevant to prognosis and to TIME. Two metabolic pathway-related clusters (C1 and C2) were identified, with some differences in immune activating cell infiltration between the two clusters, and C2 was more likely to respond to two chemotherapeutic agents than C1. Three MRG-related gene clusters (GC1-3) were also identified, with significant differences in prognosis among the three clusters. GC2 and GC3 had higher immune cell infiltration than GC1. GC3 is most likely to respond to immune checkpoint blockade and to three commonly used clinical drugs. A metabolism-related risk model was developed and validated. The risk model has strong prognostic predictive power and the low-risk group has a higher level of immune infiltration than the high-risk group. Knockdown of ST3GAL4 significantly inhibited proliferation, migration, invasion and glycolysis of osteosarcoma cells and inhibited the M2 polarization of macrophages.

Conclusion: The metabolism of vitamins and cofactors is an important prognostic regulator of TIME in osteosarcoma, MRG-related gene clusters can well reflect changes in osteosarcoma TIME and predict chemotherapy and immunotherapy response. The metabolism-related risk model may serve as a useful prognostic predictor. ST3GAL4 plays a critical role in the progression, glycolysis, and TIME of osteosarcoma cells.

背景:骨肉瘤的代谢重塑和肿瘤免疫微环境(TIME)变化是影响预后和治疗的重要因素。然而,新陈代谢与 TIME 之间的关系还需要进一步探讨:本研究纳入了 TARGET 数据库和 GEO 数据库中一个独立队列的 84 例骨肉瘤患者的 RNA-Seq 数据和临床信息。研究推断了骨肉瘤患者体内七条代谢超通路的活性和免疫浸润水平。通过无监督聚类,确定了代谢相关基因(MRGs),并确定了不同的代谢集群和MRG相关基因集群。然后比较了不同聚类之间的 TIME 差异。此外,还构建了基于MRGs的风险模型,并通过分子生物学实验探讨了关键风险基因ST3GAL4在骨肉瘤细胞中的作用:结果:该研究揭示了骨肉瘤的四个关键代谢通路,其中维生素和辅助因子代谢与预后和TIME最为相关。发现了两个与代谢途径相关的基因簇(C1 和 C2),两个基因簇在免疫激活细胞浸润方面存在一些差异,C2 比 C1 更有可能对两种化疗药物产生反应。此外,还发现了三个与 MRG 相关的基因簇(GC1-3),三个基因簇的预后存在显著差异。与 GC1 相比,GC2 和 GC3 有更高的免疫细胞浸润。GC3最有可能对免疫检查点阻断疗法和三种临床常用药物产生反应。我们开发并验证了一个与代谢相关的风险模型。该风险模型具有很强的预后预测能力,低风险组的免疫细胞浸润水平高于高风险组。敲除 ST3GAL4 能显著抑制骨肉瘤细胞的增殖、迁移、侵袭和糖酵解,并抑制巨噬细胞的 M2 极化:维生素和辅助因子的代谢是骨肉瘤TIME的重要预后调节因子,MRG相关基因簇能很好地反映骨肉瘤TIME的变化,预测化疗和免疫治疗的反应。代谢相关风险模型可作为一种有用的预后预测指标。ST3GAL4在骨肉瘤细胞的进展、糖酵解和TIME中发挥着关键作用。
{"title":"Exploring the relationship between metabolism and immune microenvironment in osteosarcoma based on metabolic pathways.","authors":"Changwu Wu, Jun Tan, Hong Shen, Chao Deng, Christian Kleber, Georg Osterhoff, Nikolas Schopow","doi":"10.1186/s12929-024-00999-7","DOIUrl":"10.1186/s12929-024-00999-7","url":null,"abstract":"<p><strong>Background: </strong>Metabolic remodeling and changes in tumor immune microenvironment (TIME) in osteosarcoma are important factors affecting prognosis and treatment. However, the relationship between metabolism and TIME needs to be further explored.</p><p><strong>Methods: </strong>RNA-Seq data and clinical information of 84 patients with osteosarcoma from the TARGET database and an independent cohort from the GEO database were included in this study. The activity of seven metabolic super-pathways and immune infiltration levels were inferred in osteosarcoma patients. Metabolism-related genes (MRGs) were identified and different metabolic clusters and MRG-related gene clusters were identified using unsupervised clustering. Then the TIME differences between the different clusters were compared. In addition, an MRGs-based risk model was constructed and the role of a key risk gene, ST3GAL4, in osteosarcoma cells was explored using molecular biological experiments.</p><p><strong>Results: </strong>This study revealed four key metabolic pathways in osteosarcoma, with vitamin and cofactor metabolism being the most relevant to prognosis and to TIME. Two metabolic pathway-related clusters (C1 and C2) were identified, with some differences in immune activating cell infiltration between the two clusters, and C2 was more likely to respond to two chemotherapeutic agents than C1. Three MRG-related gene clusters (GC1-3) were also identified, with significant differences in prognosis among the three clusters. GC2 and GC3 had higher immune cell infiltration than GC1. GC3 is most likely to respond to immune checkpoint blockade and to three commonly used clinical drugs. A metabolism-related risk model was developed and validated. The risk model has strong prognostic predictive power and the low-risk group has a higher level of immune infiltration than the high-risk group. Knockdown of ST3GAL4 significantly inhibited proliferation, migration, invasion and glycolysis of osteosarcoma cells and inhibited the M2 polarization of macrophages.</p><p><strong>Conclusion: </strong>The metabolism of vitamins and cofactors is an important prognostic regulator of TIME in osteosarcoma, MRG-related gene clusters can well reflect changes in osteosarcoma TIME and predict chemotherapy and immunotherapy response. The metabolism-related risk model may serve as a useful prognostic predictor. ST3GAL4 plays a critical role in the progression, glycolysis, and TIME of osteosarcoma cells.</p>","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"31 1","pages":"4"},"PeriodicalIF":9.0,"publicationDate":"2024-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10785352/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139424844","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The synergism of cytosolic acidosis and reduced NAD+/NADH ratio is responsible for lactic acidosis-induced vascular smooth muscle cell impairment in sepsis. 细胞酸中毒和 NAD+/NADH 比率降低的协同作用是脓毒症中乳酸酸中毒诱发血管平滑肌细胞损伤的原因。
IF 11 2区 医学 Q1 CELL BIOLOGY Pub Date : 2024-01-09 DOI: 10.1186/s12929-023-00992-6
Philipp Terpe, Stefanie Ruhs, Virginie Dubourg, Michael Bucher, Michael Gekle

Background: During sepsis, serve vascular dysfunctions lead to life-threatening multiple organ failure, due to vascular smooth muscle cells (VSMC) impairments, resulting in vasoplegia, hypotension and hypoperfusion. In addition, septic patients have an altered cell metabolism that leads to lactic acidosis. Septic patients suffering from lactic acidosis have a high risk of mortality. In addition, septic survivors are at risk of secondary vascular disease. The underlying mechanisms of whether and how lactic acidosis leads to the changes in VSMCs is not well understood. The aim of this study was to comprehensively investigate the effect of lactic acidosis on VSMCs and additionally compare the effects with those induced by pure acidosis and sodium lactate.

Methods: Primary human aortic smooth muscle cells (HAoSMCs) were treated for 48 h with lactic acidosis (LA_pH 6.8), hydrochloric acid (HCl_pH 6.8), sodium lactate (Na+-lactate_pH 7.4) and the respective controls (ctrl._pH 7.4; hyperosmolarity control: mannitol_pH 7.4) and comparatively analyzed for changes in (i) transcriptome, (ii) energy metabolism, and (iii) phenotype.

Results: Both types of acidosis led to comparable and sustained intracellular acidification without affecting cell viability. RNA sequencing and detailed transcriptome analysis revealed more significant changes for lactic acidosis than for hydrochloric acidosis, with lactate being almost ineffective, suggesting qualitative and quantitative synergism of acidosis and lactate. Bioinformatic predictions in energy metabolism and phenotype were confirmed experimentally. Lactic acidosis resulted in strong inhibition of glycolysis, glutaminolysis, and altered mitochondrial respiration which reduced cellular ATP content, likely due to increased TXNIP expression and altered NAD+/NADH ratio. Hydrochloric acidosis induced significantly smaller effects without changing the NAD+/NADH ratio, with the ATP content remaining constant. These metabolic changes led to osteo-/chondrogenic/senescent transdifferentiation of VSMCs, with the effect being more pronounced in lactic acidosis than in pure acidosis.

Conclusions: Overall, lactic acidosis exerted a much stronger effect on energy metabolism than pure acidosis, whereas lactate had almost no effect, reflecting the qualitative and quantitative synergism of acidosis and lactate. As a consequence, lactic acidosis may lead to acute functional impairments of VSMC, sustained perturbations of the transcriptome and cellular dedifferentiation. Moreover, these effects may contribute to the acute and prolonged vascular pathomechanisms in septic patients.

背景:脓毒症期间,由于血管平滑肌细胞(VSMC)受损,导致血管痉挛、低血压和灌注不足,从而引发血管功能障碍,导致多器官衰竭,危及生命。此外,脓毒症患者的细胞代谢发生改变,导致乳酸中毒。患有乳酸酸中毒的脓毒症患者死亡率很高。此外,脓毒症幸存者还有继发血管疾病的风险。乳酸酸中毒是否以及如何导致血管内皮细胞发生变化的潜在机制尚不十分清楚。本研究旨在全面研究乳酸酸中毒对血管平滑肌细胞的影响,并将其与纯酸中毒和乳酸钠诱导的影响进行比较:方法:将原代人主动脉平滑肌细胞(HAoSMCs)分别用乳酸酸中毒(LA_pH 6.8)、盐酸(HCl_pH 6.8)、乳酸钠(Na+-lactate_pH 7.4)和各自的对照组(ctrl._pH 7.4;高渗对照组:甘露醇_pH 7.4),并比较分析了(i)转录组、(ii)能量代谢和(iii)表型的变化:结果:两种类型的酸中毒都导致了相当和持续的细胞内酸化,但不影响细胞活力。RNA测序和详细的转录组分析表明,乳酸酸中毒比盐酸酸中毒的变化更显著,而乳酸几乎不起作用,这表明酸中毒和乳酸在质量和数量上具有协同作用。实验证实了生物信息学对能量代谢和表型的预测。乳酸中毒导致糖酵解、谷氨酰胺酵解受到强烈抑制,线粒体呼吸发生改变,从而降低了细胞的 ATP 含量,这可能是由于 TXNIP 表达增加和 NAD+/NADH 比率改变所致。盐酸中毒引起的影响明显较小,NAD+/NADH 比率没有变化,ATP 含量保持不变。这些代谢变化导致了血管内皮细胞的骨性/软骨性/衰老性转分化,乳酸性酸中毒比单纯性酸中毒的影响更明显:总的来说,乳酸酸中毒对能量代谢的影响比单纯酸中毒大得多,而乳酸几乎没有影响,这反映了酸中毒和乳酸在质和量上的协同作用。因此,乳酸中毒可能会导致血管内皮细胞急性功能损伤、转录组的持续紊乱和细胞的去分化。此外,这些影响可能会导致脓毒症患者血管病理机制的急性化和长期化。
{"title":"The synergism of cytosolic acidosis and reduced NAD<sup>+</sup>/NADH ratio is responsible for lactic acidosis-induced vascular smooth muscle cell impairment in sepsis.","authors":"Philipp Terpe, Stefanie Ruhs, Virginie Dubourg, Michael Bucher, Michael Gekle","doi":"10.1186/s12929-023-00992-6","DOIUrl":"10.1186/s12929-023-00992-6","url":null,"abstract":"<p><strong>Background: </strong>During sepsis, serve vascular dysfunctions lead to life-threatening multiple organ failure, due to vascular smooth muscle cells (VSMC) impairments, resulting in vasoplegia, hypotension and hypoperfusion. In addition, septic patients have an altered cell metabolism that leads to lactic acidosis. Septic patients suffering from lactic acidosis have a high risk of mortality. In addition, septic survivors are at risk of secondary vascular disease. The underlying mechanisms of whether and how lactic acidosis leads to the changes in VSMCs is not well understood. The aim of this study was to comprehensively investigate the effect of lactic acidosis on VSMCs and additionally compare the effects with those induced by pure acidosis and sodium lactate.</p><p><strong>Methods: </strong>Primary human aortic smooth muscle cells (HAoSMCs) were treated for 48 h with lactic acidosis (LA_pH 6.8), hydrochloric acid (HCl_pH 6.8), sodium lactate (Na<sup>+</sup>-lactate_pH 7.4) and the respective controls (ctrl._pH 7.4; hyperosmolarity control: mannitol_pH 7.4) and comparatively analyzed for changes in (i) transcriptome, (ii) energy metabolism, and (iii) phenotype.</p><p><strong>Results: </strong>Both types of acidosis led to comparable and sustained intracellular acidification without affecting cell viability. RNA sequencing and detailed transcriptome analysis revealed more significant changes for lactic acidosis than for hydrochloric acidosis, with lactate being almost ineffective, suggesting qualitative and quantitative synergism of acidosis and lactate. Bioinformatic predictions in energy metabolism and phenotype were confirmed experimentally. Lactic acidosis resulted in strong inhibition of glycolysis, glutaminolysis, and altered mitochondrial respiration which reduced cellular ATP content, likely due to increased TXNIP expression and altered NAD<sup>+</sup>/NADH ratio. Hydrochloric acidosis induced significantly smaller effects without changing the NAD<sup>+</sup>/NADH ratio, with the ATP content remaining constant. These metabolic changes led to osteo-/chondrogenic/senescent transdifferentiation of VSMCs, with the effect being more pronounced in lactic acidosis than in pure acidosis.</p><p><strong>Conclusions: </strong>Overall, lactic acidosis exerted a much stronger effect on energy metabolism than pure acidosis, whereas lactate had almost no effect, reflecting the qualitative and quantitative synergism of acidosis and lactate. As a consequence, lactic acidosis may lead to acute functional impairments of VSMC, sustained perturbations of the transcriptome and cellular dedifferentiation. Moreover, these effects may contribute to the acute and prolonged vascular pathomechanisms in septic patients.</p>","PeriodicalId":15365,"journal":{"name":"Journal of Biomedical Science","volume":"31 1","pages":"3"},"PeriodicalIF":11.0,"publicationDate":"2024-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10775599/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139403100","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Biomedical Science
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1