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Marla Sokolowski: and now for someone completely different. Marla Sokolowski:现在轮到一个完全不同的人了。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-07-14 DOI: 10.1080/01677063.2021.1940175
H Sofia Pereira, Karen D Williams, J Steven de Belle

A comprehensive science, technology, engineering, and mathematics (STEM) education has persistent formative effects on individuals, communities, and society. In this regard, Marla Sokolowski's academic legacy will forever reflect her unique contributions to STEM education and mentoring. Furthermore, her creative and multidisciplinary approach to research has resulted in groundbreaking advances in our understanding of behavior genetics. Illustrated here are a few of our life-long learning experiences drawn mainly from earlier parts of Marla's career.

全面的科学、技术、工程和数学(STEM)教育对个人、社区和社会具有持久的形成作用。在这方面,Marla Sokolowski的学术遗产将永远反映她对STEM教育和指导的独特贡献。此外,她的创造性和多学科研究方法在我们对行为遗传学的理解方面取得了突破性进展。下面是马拉早期职业生涯中我们的一些终身学习经验。
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引用次数: 2
Expression of the foraging gene in adult Drosophila melanogaster. 成年黑腹果蝇觅食基因的表达。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-08-12 DOI: 10.1080/01677063.2021.1941946
Aaron M Allen, Marla B Sokolowski

The foraging gene in Drosophila melanogaster, which encodes a cGMP-dependent protein kinase, is a highly conserved, complex gene with multiple pleiotropic behavioral and physiological functions in both the larval and adult fly. Adult foraging expression is less well characterized than in the larva. We characterized foraging expression in the brain, gastric system, and reproductive systems using a T2A-Gal4 gene-trap allele. In the brain, foraging expression appears to be restricted to multiple sub-types of glia. This glial-specific cellular localization of foraging was supported by single-cell transcriptomic atlases of the adult brain. foraging is extensively expressed in most cell types in the gastric and reproductive systems. We then mapped multiple cis-regulatory elements responsible for parts of the observed expression patterns by a nested cloned promoter-Gal4 analysis. The mapped cis-regulatory elements were consistently modular when comparing the larval and adult expression patterns. These new data using the T2A-Gal4 gene-trap and cloned foraging promoter fusion GAL4's are discussed with respect to previous work using an anti-FOR antibody, which we show here to be non-specific. Future studies of foraging's function will consider roles for glial subtypes and peripheral tissues (gastric and reproductive systems) in foraging's pleiotropic behavioral and physiological effects.

黑腹果蝇的觅食基因编码cgmp依赖性蛋白激酶,是一个高度保守的复杂基因,在幼虫和成虫中都具有多种多样的行为和生理功能。与幼虫相比,成虫的觅食表达特征较差。我们利用T2A-Gal4基因诱捕等位基因表征了觅食在大脑、胃系统和生殖系统中的表达。在大脑中,觅食表达似乎仅限于多种胶质细胞亚型。成人大脑的单细胞转录组图谱支持这种胶质细胞特异性的觅食细胞定位。觅食在胃和生殖系统的大多数细胞类型中广泛表达。然后,我们通过嵌套克隆启动子gal4分析,绘制了负责部分观察到的表达模式的多个顺式调控元件。在比较幼虫和成虫的表达模式时,映射的顺式调控元件一致是模块化的。这些使用T2A-Gal4基因陷阱和克隆觅食启动子融合GAL4的新数据与之前使用抗for抗体的工作进行了讨论,我们在这里显示其是非特异性的。未来关于觅食功能的研究将考虑神经胶质亚型和外周组织(胃和生殖系统)在觅食的多效性行为和生理效应中的作用。
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引用次数: 7
The Drosophila melanogaster foraging gene affects social networks. 黑腹果蝇的觅食基因影响着社会网络。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-06-12 DOI: 10.1080/01677063.2021.1936517
Nawar Alwash, Aaron M Allen, Marla B Sokolowski, Joel D Levine

Drosophila melanogaster displays social behaviors including courtship, mating, aggression, and group foraging. Recent studies employed social network analyses (SNAs) to show that D. melanogaster strains differ in their group behavior, suggesting that genes influence social network phenotypes. Aside from genes associated with sensory function, few studies address the genetic underpinnings of these networks. The foraging gene (for) is a well-established example of a pleiotropic gene that regulates multiple behavioral phenotypes and their plasticity. In D. melanogaster, there are two naturally occurring alleles of for called rover and sitter that differ in their larval and adult food-search behavior as well as other behavioral phenotypes. Here, we hypothesize that for affects behavioral elements required to form social networks and the social networks themselves. These effects are evident when we manipulate gene dosage. We found that flies of the rover and sitter strains exhibit differences in duration, frequency, and reciprocity of pairwise interactions, and they form social networks with differences in assortativity and global efficiency. Consistent with other adult phenotypes influenced by for, rover-sitter heterozygotes show intermediate patterns of dominance in many of these characteristics. Multiple generations of backcrossing a rover allele into a sitter strain showed that many but not all of these rover-sitter differences may be attributed to allelic variation at for. Our findings reveal the significant role that for plays in affecting social network properties and their behavioral elements in Drosophila melanogaster.

黑腹果蝇的社会行为包括求偶、交配、攻击和群体觅食。最近的研究利用社会网络分析(SNAs)表明,黑腹d.m anogaster菌株在群体行为上存在差异,表明基因影响社会网络表型。除了与感觉功能相关的基因外,很少有研究涉及这些网络的遗传基础。觅食基因(for)是一个公认的多效性基因的例子,它调节多种行为表型及其可塑性。在黑腹海蛞蝓中,有两种自然存在的等位基因,称为漫游者和保姆,它们在幼虫和成年食物寻找行为以及其他行为表型上有所不同。在这里,我们假设,对于影响形成社会网络和社会网络本身所需的行为因素。当我们操纵基因剂量时,这些影响是明显的。我们发现,漫游蝇和坐蝇在持续时间、频率和互惠性方面存在差异,它们形成的社会网络在分类性和整体效率方面存在差异。与其他受for影响的成人表型一致,rover-sitter杂合子在许多这些特征中表现出中间优势模式。将一个漫游者等位基因回交到一个sitter菌株的多代研究表明,这些漫游者与sitter之间的许多差异(但不是全部)可能归因于基因的等位基因变异。我们的研究结果揭示了在影响果蝇社会网络属性及其行为要素方面的重要作用。
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引用次数: 9
Neurodevelopmental and transcriptomic effects of CRISPR/Cas9-induced somatic orco mutation in honey bees. CRISPR/ cas9诱导的蜜蜂体细胞orco突变的神经发育和转录组效应
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-03-05 DOI: 10.1080/01677063.2021.1887173
Zhenqing Chen, Ian M Traniello, Seema Rana, Amy C Cash-Ahmed, Alison L Sankey, Che Yang, Gene E Robinson

In insects, odorant receptors facilitate olfactory communication and require the functionality of the highly conserved co-receptor gene orco. Genome editing studies in a few species of ants and moths have revealed that orco can also have a neurodevelopmental function, in addition to its canonical role in adult olfaction, discovered first in Drosophila melanogaster. To extend this analysis, we determined whether orco mutations also affect the development of the adult brain of the honey bee Apis mellifera, an important model system for social behavior and chemical communication. We used CRISPR/Cas9 to knock out orco and examined anatomical and molecular consequences. To increase efficiency, we coupled embryo microinjection with a laboratory egg collection and in vitro rearing system. This new workflow advances genomic engineering technologies in honey bees by overcoming restrictions associated with field studies. We used Sanger sequencing to quickly select individuals with complete orco knockout for neuroanatomical analyses and later validated and described the mutations with amplicon sequencing. Mutant bees had significantly fewer glomeruli, smaller total volume of all the glomeruli, and higher mean individual glomerulus volume in the antennal lobe compared to wild-type controls. RNA-Sequencing revealed that orco knockout also caused differential expression of hundreds of genes in the antenna, including genes related to neural development and genes encoding odorant receptors. The expression of other types of chemoreceptor genes was generally unaffected, reflecting specificity of CRISPR activity in this study. These results suggest that neurodevelopmental effects of orco are related to specific insect life histories.

在昆虫中,气味受体促进嗅觉交流,并需要高度保守的共受体基因orco的功能。对几种蚂蚁和飞蛾的基因组编辑研究表明,除了在成年嗅觉中发挥典型作用外,orco还具有神经发育功能,这种功能首先在果蝇身上发现。为了扩展这一分析,我们确定了orco突变是否也影响蜜蜂成年大脑的发育,这是一个重要的社会行为和化学交流模型系统。我们使用CRISPR/Cas9敲除orco,并检查了解剖和分子结果。为了提高效率,我们将胚胎显微注射与实验室卵子采集和体外饲养系统相结合。这种新的工作流程通过克服与实地研究相关的限制,推进了蜜蜂基因组工程技术。我们使用Sanger测序快速选择orco基因完全敲除的个体进行神经解剖学分析,随后用扩增子测序验证和描述突变。与野生型对照相比,突变型蜜蜂的肾小球明显减少,所有肾小球的总体积更小,触角叶的平均单个肾小球体积更高。rna测序显示,orco敲除还导致天线中数百个基因的差异表达,包括与神经发育相关的基因和编码气味受体的基因。其他类型的化学受体基因的表达一般不受影响,反映了本研究中CRISPR活性的特异性。这些结果表明,orco对神经发育的影响与特定的昆虫生活史有关。
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引用次数: 18
Learning about quantitative genetics from Marla Sokolowski. 向Marla Sokolowski学习定量遗传学。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-06-15 DOI: 10.1080/01677063.2021.1940167
Ralph J Greenspan

Marla Sokolowski is a true pioneer in behavioral genetics, having made the first molecular delineation of a naturally occurring behavioral polymorphism in her work on the foraging locus in Drosophila melanogaster. The gene was subsequently found to be responsible for behavioral variants and types in many other species, both invertebrate and mammal (human). The path to get there is a paradigmatic example of how to use the power of genetic analysis, including some rather esoteric techniques, to zero in on a gene and delineate its molecular identity and its pleiotropic roles.

Marla Sokolowski是行为遗传学的真正先驱,她在研究黑腹果蝇(Drosophila melanogaster)的觅食位点时,首次对自然发生的行为多态性进行了分子描述。该基因随后被发现与许多其他物种的行为变异和类型有关,包括无脊椎动物和哺乳动物(人类)。实现这一目标的途径是一个典型的例子,说明如何利用基因分析的力量,包括一些相当深奥的技术,来定位一个基因,描绘它的分子身份和它的多效性作用。
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引用次数: 1
The Drosophila foraging gene plays a vital role at the start of metamorphosis for subsequent adult emergence. 果蝇的觅食基因在果蝇蜕变的开始和随后成虫的出现中起着至关重要的作用。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-05-04 DOI: 10.1080/01677063.2021.1914608
Ina Anreiter, Aaron M Allen, Oscar E Vasquez, Lydia To, Scott J Douglas, Javier V Alvarez, John Ewer, Marla B Sokolowski

The foraging (for) gene has been extensively studied in many species for its functions in development, physiology, and behavior. It is common for genes that influence behavior and development to be essential genes, and for has been found to be an essential gene in both fruit flies and mammals, with for mutants dying before reaching the adult stage. However, the biological process underlying the lethality associated with this gene is not known. Here, we show that in Drosophila melanogaster, some but not all gene products of for are essential for survival. Specifically, we show that promoter 3 of for, but not promoters 1, 2, and 4 are required for survival past pupal stage. We use full and partial genetic deletions of for, and temperature-restricted knock-down of the gene to further investigate the stage of lethality. While deletion analysis shows that flies lacking for die at the end of pupal development, as pharate adults, temperature-restricted knock-down shows that for is only required at the start of pupal development, for normal adult emergence (AE) and viability. We further show that the inability of these mutants to emerge from their pupal cases is linked to deficiencies in emergence behaviors, caused by a possible energy deficiency, and finally, that the lethality of for mutants seems to be linked to protein isoform P3, transcribed from for promoter 3.

觅食(for)基因在许多物种中因其在发育、生理和行为方面的功能而被广泛研究。影响行为和发育的基因通常是必不可少的基因,在果蝇和哺乳动物中都发现了一个必不可少的基因,突变体在到达成年阶段之前就死亡了。然而,与该基因相关的致死性的生物学过程尚不清楚。在这里,我们表明,在果蝇中,一些但不是全部的基因产物是生存所必需的。具体地说,我们表明启动子3,而不是启动子1、2和4是存活过蛹期所必需的。我们使用for的全部和部分基因缺失,以及温度限制性基因敲除来进一步研究致死阶段。虽然缺失分析表明,果蝇在蛹发育结束时缺乏for,但作为成熟成虫,温度限制敲除表明,for仅在蛹发育开始时需要,用于正常的成虫羽化(AE)和生存能力。我们进一步表明,这些突变体无法从它们的蛹中出现与出现行为的缺陷有关,这可能是由能量缺乏引起的,最后,突变体的致命性似乎与启动子3转录的蛋白质异构体P3有关。
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引用次数: 6
Generation and characterization of fruitless P1 promoter mutant in Drosophila melanogaster. 黑腹果蝇P1无果启动子突变体的产生及特性研究。
IF 2 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-08-02 DOI: 10.1080/01677063.2021.1931179
Megan C Neville, Alexander Eastwood, Aaron M Allen, Ammerins de Haan, Tetsuya Nojima, Stephen F Goodwin

The identification of mutations in the gene fruitless (fru) paved the way for understanding the genetic basis of male sexual behavior in the vinegar fly Drosophila melanogaster. D. melanogaster males perform an elaborate courtship display to the female, ultimately leading to copulation. Mutations in fru have been shown to disrupt most aspects of the male's behavioral display, rendering males behaviorally sterile. The fru genomic locus encodes for multiple transcription factor isoforms from several promoters; only those under the regulation of the most distal P1 promoter are under the control of the sex determination hierarchy and play a role in male-specific behaviors. In this study, we used CRISPR/Cas9-based targeted genome editing of the fru gene, to remove the P1 promoter region. We have shown that removal of the P1 promoter leads to a dramatic decrease in male courtship displays towards females and male-specific sterility. We have expanded the analysis of fru P1-dependent behaviors, examining male's response to courtship song and general activity levels during12-hour light: dark cycles. Our novel allele expands the mutant repertoire available for future studies of fru P1-derived function in D. melanogaster. Our fruΔP1 mutant will be useful for future studies of fru P1-derived function, as it can be homozygosed without disrupting additional downstream promoter function and can be utilized in heterozygous combinations with other extant fru alleles.

无果基因(fru)突变的鉴定为理解黑腹果蝇雄性性行为的遗传基础铺平了道路。雄性黑腹龙会向雌性进行精心的求爱表演,最终导致交配。fru的突变已被证明会破坏雄性行为表现的大多数方面,使雄性行为不育。fru基因组位点编码来自多个启动子的多个转录因子亚型;只有那些受最末端P1启动子调控的基因才受性别决定等级的控制,并在男性特异性行为中发挥作用。在本研究中,我们使用基于CRISPR/ cas9的fru基因靶向基因组编辑,去除P1启动子区域。我们已经证明,P1启动子的移除会导致雄性对雌性的求爱表现和雄性特异性不育的急剧减少。我们扩大了对fru p1依赖行为的分析,研究了雄性在12小时的明暗周期中对求爱歌曲的反应和一般活动水平。我们的新等位基因扩展了突变库,可用于未来研究黑腹龙fru p1衍生功能。我们的fruΔP1突变体将对未来fru p1衍生功能的研究有用,因为它可以纯合而不破坏额外的下游启动子功能,并且可以与其他现存的fru等位基因进行杂合组合。
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引用次数: 0
Conditioned courtship suppression in Drosophila melanogaster. 黑腹果蝇的条件求爱抑制。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-01-31 DOI: 10.1080/01677063.2021.1873323
Nicholas Raun, Spencer Jones, Jamie M Kramer

Drosophila melanogaster males reduce courtship behaviour after mating failure. In the lab, such conditioned courtship suppression, aka 'courtship conditioning', serves as a complex learning and memory assay. Interestingly, variations in the courtship conditioning assay can establish different types of memory. Here, we review research investigating the underlying cellular and molecular mechanisms that allow male flies to form memories of previous mating failures.

雄性黑腹果蝇在交配失败后减少求偶行为。在实验室里,这种条件求爱抑制,又名“求爱条件反射”,作为一种复杂的学习和记忆实验。有趣的是,求偶条件反射试验的变化可以建立不同类型的记忆。在这里,我们回顾了研究潜在的细胞和分子机制,使雄性果蝇形成以前交配失败的记忆。
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引用次数: 12
A quick and versatile protocol for the 3D visualization of transgene expression across the whole body of larval Drosophila. 一个快速和通用的方案,转基因表达的三维可视化在整个幼虫果蝇。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-03-10 DOI: 10.1080/01677063.2021.1892096
Oliver Kobler, Aliće Weiglein, Kathrin Hartung, Yi-Chun Chen, Bertram Gerber, Ulrich Thomas

Larval Drosophila are used as a genetically accessible study case in many areas of biological research. Here we report a fast, robust and user-friendly procedure for the whole-body multi-fluorescence imaging of Drosophila larvae; the protocol has been optimized specifically for larvae by systematically tackling the pitfalls associated with clearing this small but cuticularized organism. Tests on various fluorescent proteins reveal that the recently introduced monomeric infrared fluorescent protein (mIFP) is particularly suitable for our approach. This approach comprises an effective, low-cost clearing protocol with minimal handling time and reduced toxicity in the reagents employed. It combines a success rate high enough to allow for small-scale screening approaches and a resolution sufficient for cellular-level analyses with light sheet and confocal microscopy. Given that publications and database documentations typically specify expression patterns of transgenic driver lines only within a given organ system of interest, the present procedure should be versatile enough to extend such documentation systematically to the whole body. As examples, the expression patterns of transgenic driver lines covering the majority of neurons, or subsets of chemosensory, central brain or motor neurons, are documented in the context of whole larval body volumes (using nsyb-Gal4, IR76b-Gal4, APL-Gal4 and mushroom body Kenyon cells, or OK371-Gal4, respectively). Notably, the presented protocol allows for triple-color fluorescence imaging with near-infrared, red and yellow fluorescent proteins.

果蝇幼虫在生物学研究的许多领域被用作遗传学研究的案例。在这里,我们报告了一种快速、稳健和用户友好的程序,用于果蝇幼虫的全身多荧光成像;该方案通过系统地解决与清除这种小但表皮化的生物相关的陷阱,专门针对幼虫进行了优化。对各种荧光蛋白的测试表明,最近引入的单体红外荧光蛋白(mIFP)特别适合我们的方法。这种方法包括一种有效的、低成本的清除方案,处理时间最短,所用试剂的毒性降低。它结合了足够高的成功率,以允许小规模的筛选方法和足够的分辨率,细胞水平分析与光片和共聚焦显微镜。鉴于出版物和数据库文件通常只在感兴趣的特定器官系统内指定转基因驱动系的表达模式,目前的程序应该是通用的,足以将这种文件系统地扩展到整个身体。例如,转基因驱动系的表达模式覆盖了大部分神经元,或化学感觉、中枢脑或运动神经元的子集,在整个幼虫体体积的背景下被记录(分别使用nsyb-Gal4、IR76b-Gal4、APL-Gal4和蘑菇体Kenyon细胞,或OK371-Gal4)。值得注意的是,提出的方案允许近红外,红色和黄色荧光蛋白的三色荧光成像。
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引用次数: 3
Dysregulation of Myt1 expression acts as a potential peripheral biomarker for major depressive disorder and bipolar disorder. Myt1表达失调是重度抑郁症和双相情感障碍的潜在外周生物标志物。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2021-09-01 Epub Date: 2021-05-20 DOI: 10.1080/01677063.2021.1928663
Maryam Ghanbarirad, Mehrdad Hashemi, Seyed Mehdi Saberi, Ahmad Majd

Major depressive disorder (MDD) and bipolar disorder (BPD) are among the most debilitating mental conditions. Diagnostic criteria for MDD include psychological and physical symptoms, such as low mood and changes in appetite or sleep, respectively. BPD in addition to periods of depression represents episodes of mania or hypomania, and elevation in mood and energy levels are associated with this condition. Dysregulation in adult neurogenesis and myelination have been reported in psychiatric disorders. As a key factor in neurogenesis, it was hypothesized that Myt1 gene expression may be altered in these conditions. Using Real-time PCR, Myt1 expression level in 100 MDD patients and 100 BPD patients, compared with healthy control (HC) individuals was evaluated. Results demonstrate significant downregulation of Myt1 in MDD and BPD. Logistic regression analysis and binary classification evaluation reveal potential risk factor and biomarker characteristics of Myt1, respectively. Moreover, forward and backward digit span results denote a significant reduction in the function of working memory (WM) of MDD and BPD subjects. Correlation analysis revealed a significant association between Myt1 downregulation and WM disruption in the affected individuals. In conclusion, due to its altered role in neurogenesis, downregulation of Myt1 can be associated with the pathology of MDD and BPD.

重度抑郁症(MDD)和双相情感障碍(BPD)是最使人衰弱的精神疾病。重度抑郁症的诊断标准包括心理和生理症状,如情绪低落、食欲或睡眠改变。BPD除了抑郁期外,还表现为躁狂或轻躁狂的发作,情绪和能量水平的升高与这种情况有关。成人神经发生和髓鞘形成失调在精神疾病中也有报道。作为神经发生的关键因素,Myt1基因的表达可能在这些情况下发生改变。采用Real-time PCR技术,对100例MDD患者和100例BPD患者的Myt1表达水平进行了评估,并与健康对照(HC)进行了比较。结果显示Myt1在MDD和BPD中显著下调。Logistic回归分析和二元分类评价分别揭示了Myt1的潜在危险因素和生物标志物特征。此外,前向和后向数字广度结果显示MDD和BPD受试者的工作记忆功能显著降低。相关分析显示Myt1下调与WM破坏之间存在显著关联。总之,由于其在神经发生中的作用改变,Myt1的下调可能与MDD和BPD的病理有关。
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引用次数: 0
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Journal of neurogenetics
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