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Learning to collaborate: bringing together behavior and quantitative genomics. 学习合作:将行为和定量基因组学结合在一起。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2020-03-01 Epub Date: 2020-01-10 DOI: 10.1080/01677063.2019.1710145
Patricka A Williams-Simon, Mathangi Ganesan, Elizabeth G King

The genetic basis of complex trait like learning and memory have been well studied over the decades. Through those groundbreaking findings, we now have a better understanding about some of the genes and pathways that are involved in learning and/or memory. However, few of these findings identified the naturally segregating variants that are influencing learning and/or memory within populations. In this special issue honoring the legacy of Troy Zars, we review some of the traditional approaches that have been used to elucidate the genetic basis of learning and/or memory, specifically in fruit flies. We highlight some of his contributions to the field, and specifically describe his vision to bring together behavior and quantitative genomics with the aim of expanding our knowledge of the genetic basis of both learning and memory. Finally, we present some of our recent work in this area using a multiparental population (MPP) as a case study and describe the potential of this approach to advance our understanding of neurogenetics.

几十年来,学习和记忆等复杂特征的遗传基础已经得到了很好的研究。通过这些突破性的发现,我们现在对一些与学习和/或记忆有关的基因和途径有了更好的了解。然而,这些发现中很少发现影响群体学习和/或记忆的自然分离变异。在这期纪念Troy Zars遗产的特刊中,我们回顾了一些传统的方法,这些方法被用来阐明学习和/或记忆的遗传基础,特别是在果蝇中。我们重点介绍了他对该领域的一些贡献,并具体描述了他将行为基因组学和定量基因组学结合起来的愿景,目的是扩大我们对学习和记忆的遗传基础的了解。最后,我们以多亲代群体(MPP)为例,介绍了我们最近在这一领域的一些工作,并描述了这种方法在促进我们对神经遗传学理解方面的潜力。
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引用次数: 0
Food restriction reconfigures naïve and learned choice behavior in Drosophila larvae. 食物限制重新配置naïve和果蝇幼虫的习得选择行为。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2020-03-01 Epub Date: 2020-01-24 DOI: 10.1080/01677063.2020.1714612
Benita Brünner, Juliane Saumweber, Merve Samur, Denise Weber, Isabell Schumann, Deepthi Mahishi, Astrid Rohwedder, Andreas S Thum

In many animals, the establishment and expression of food-related memory is limited by the presence of food and promoted by its absence, implying that this behavior is driven by motivation. In the past, this has already been demonstrated in various insects including honeybees and adult Drosophila. For Drosophila larvae, which are characterized by an immense growth and the resulting need for constant food intake, however, knowledge is rather limited. Accordingly, we have analyzed whether starvation modulates larval memory formation or expression after appetitive classical olfactory conditioning, in which an odor is associated with a sugar reward. We show that odor-sugar memory of starved larvae lasts longer than in fed larvae, although the initial performance is comparable. 80 minutes after odor fructose conditioning, only starved but not fed larvae show a reliable odor-fructose memory. This is likely due to a specific increase in the stability of anesthesia-resistant memory (ARM). Furthermore, we observe that starved larvae, in contrast to fed ones, prefer sugars that offer a nutritional benefit in addition to their sweetness. Taken together our work shows that Drosophila larvae adjust the expression of learned and naïve choice behaviors in the absence of food. These effects are only short-lasting probably due to their lifestyle and their higher internal motivation to feed. In the future, the extensive use of established genetic tools will allow us to identify development-specific differences arising at the neuronal and molecular level.

在许多动物中,与食物有关的记忆的建立和表达受到食物存在的限制,并在食物不存在的情况下得到促进,这意味着这种行为是由动机驱动的。在过去,这已经在包括蜜蜂和成年果蝇在内的各种昆虫中得到了证明。然而,关于果蝇幼虫的知识相当有限,果蝇幼虫的特点是生长迅速,因此需要不断地进食。因此,我们分析了饥饿是否会调节食欲经典嗅觉条件反射后幼虫记忆的形成或表达,其中气味与糖奖励有关。我们发现饥饿幼虫的气味-糖记忆比喂食幼虫持续的时间更长,尽管初始表现相当。在气味果糖调节80分钟后,只有饥饿而非喂食的幼虫表现出可靠的气味果糖记忆。这可能是由于抗麻醉记忆(ARM)稳定性的特定增加。此外,我们观察到,与喂食的幼虫相比,饥饿的幼虫更喜欢除了甜味之外还提供营养价值的糖。综上所述,我们的研究表明,果蝇幼虫在没有食物的情况下会调整习得性和naïve选择行为的表达。这些影响只是短暂的,可能是由于它们的生活方式和更高的内在动力。在未来,广泛使用已建立的遗传工具将使我们能够识别在神经元和分子水平上产生的发育特异性差异。
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引用次数: 1
Sleep restores place learning to the adenylyl cyclase mutant rutabaga. 睡眠能恢复腺苷酸环化酶突变体芦柑的位置学习能力
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2020-03-01 Epub Date: 2020-01-30 DOI: 10.1080/01677063.2020.1720674
Stephane Dissel, Ellen Morgan, Vincent Duong, Dorothy Chan, Bruno van Swinderen, Paul Shaw, Troy Zars

Sleep plays an important role in regulating plasticity. In Drosophila, the relationship between sleep and learning and memory has primarily focused on mushroom body dependent operant-learning assays such as aversive phototaxic suppression and courtship conditioning. In this study, sleep was increased in the classic mutant rutabaga (rut2080) and dunce (dnc1) by feeding them the GABA-A agonist gaboxadol (Gab). Performance was evaluated in each mutant in response to social enrichment and place learning, tasks that do not require the mushroom body. Gab-induced sleep did not restore behavioral plasticity to either rut2080 or dnc1 mutants following social enrichment. However, increased sleep restored place learning to rut2080 mutants. These data extend the positive effects of enhanced sleep to place learning and highlight the utility of Gab for elucidating the beneficial effects of sleep on brain functioning.

睡眠在调节可塑性方面发挥着重要作用。在果蝇中,睡眠与学习和记忆之间的关系主要集中在依赖蘑菇体的操作学习实验上,如厌恶性趋光性抑制和求偶条件反射。在这项研究中,通过给经典突变体 rutabaga(rut2080)和 dunce(dnc1)喂食 GABA-A 激动剂 gaboxadol(Gab),增加了它们的睡眠。我们评估了每种突变体在社交强化和位置学习(不需要蘑菇体的任务)中的表现。Gab诱导的睡眠并不能恢复rut2080或dnc1突变体在社交强化后的行为可塑性。然而,增加睡眠能恢复rut2080突变体的位置学习能力。这些数据将增强睡眠的积极作用扩展到了位置学习,并强调了Gab在阐明睡眠对大脑功能的有益影响方面的实用性。
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引用次数: 0
Dopaminergic neurons can influence heat-box place learning in Drosophila. 多巴胺能神经元影响果蝇的热箱位置学习。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2020-03-01 Epub Date: 2020-01-30 DOI: 10.1080/01677063.2020.1715974
Aditi Mishra, Patrick Cronley, Mathangi Ganesan, David J Schulz, Troy Zars

Dopamine provides crucial neuromodulatory functions in several insect and rodent learning and memory paradigms. However, an early study suggested that dopamine may be dispensable for aversive place memory in Drosophila. Here we tested the involvement of particular dopaminergic neurons in place learning and memory. We used the thermogenetic tool Gr28bD to activate protocerebral anterior medial (PAM) cluster and non-PAM dopaminergic neurons in an operant way in heat-box place learning. We show that activation of PAM neurons influences performance during place learning, but not during memory testing. These findings provide a gateway to explore how dopamine influences place learning.

多巴胺在几种昆虫和啮齿动物的学习和记忆范式中提供重要的神经调节功能。然而,早期的一项研究表明,多巴胺对于果蝇的厌恶位置记忆可能是必不可少的。在这里,我们测试了特定的多巴胺能神经元参与地方学习和记忆。我们使用热发生工具Gr28bD以操作方式激活热箱位置学习中的原大脑前内侧(PAM)簇和非PAM多巴胺能神经元。我们发现PAM神经元的激活会影响位置学习的表现,但不会影响记忆测试。这些发现为探索多巴胺如何影响场所学习提供了一个途径。
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引用次数: 2
Troy D. Zars: a personal tribute to a scientist, colleague, and friend. 特洛伊·d·扎尔斯:向一位科学家、同事和朋友致敬。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2020-03-01 DOI: 10.1080/01677063.2020.1713118
David J Schulz

I knew Troy for nearly 15 years, and in that time I don't recall hearing any childhood stories like those in seemingly every personal statement I've read from aspiring scientists or medical students. No stories about hours spent gazing at an anthill. I don't recall hearing about shelves crowded with insects collected on Styrofoam, or animal skulls kept in a shoebox under his bed. If these collected crania existed, it was more likely because Troy was a crack shot with a pellet gun than a need to know adaptations in the dentition of local squirrel populations. I don't recall hearing about science projects taken to the Iowa State Capitol to share with politely interested legislators. But I do recall hearing about spending the entirety of the daylight hours in the summer, with his brother Doug, finding where the crappie were biting. About crystal clear water on a lake in Minnesota that you didn't quite need to know the exact location of, just in case you were thinking of going and plundering the walleye within. I definitely heard about triumphs as a starting lineman not only for his high school football team, but the mighty Norse of Luther College. I heard about summer warehouse jobs in sweltering Iowa Julys. And I saw, firsthand, love and commitment and family. Troy's story demonstrates that the finest scientists are not just cultivated in narrow STEM curricula that begin at age 5. They are just as likely to be football-playing fishermen, fathers, husbands, and friends who can navigate an operant conditioning paradigm during the week, and dance a polka and produce a magnificent smoked pork shoulder on Saturday. Nature and an independent spirit and a little bit of mischief is a different kind of Magnet school. And it gave us truly one of the best.

我认识特洛伊将近15年了,在那段时间里,我不记得在我从有抱负的科学家或医学院学生那里读到的每一份个人陈述中,都听到过任何类似的童年故事。没有关于花几个小时凝视蚁丘的故事。我不记得听说过他的书架上摆满了用泡沫塑料收集的昆虫,也没有听说过他把动物头骨放在床下的鞋盒里。如果这些收集到的头骨确实存在,那更有可能是因为特洛伊是一个用弹丸枪射击的神枪手,而不是为了了解当地松鼠种群的牙齿适应性。我不记得有人把科学项目带到爱荷华州议会大厦,与礼貌而感兴趣的立法者分享。但我确实记得,他在夏天花了整整一个白天,和他的哥哥道格(Doug)一起,寻找垃圾在哪里咬人。讲的是明尼苏达州一个湖上清澈的湖水,你不需要知道它的确切位置,以防你想去那里掠夺河眼鱼。我确实听说过他不仅是高中橄榄球队的首发前锋,而且是路德学院强大的挪威人。我听说夏天在爱荷华州闷热的七月有仓库工作。我亲眼看到了爱、承诺和家庭。特洛伊的故事表明,最优秀的科学家不仅仅是在5岁开始的狭窄的STEM课程中培养出来的。他们也可能是喜欢踢足球的渔夫、父亲、丈夫和朋友,他们可以在工作日驾驭操作性条件反射范式,在周六跳波尔卡舞,做一道美味的熏猪肩肉。自然和独立的精神和一点点调皮是一种不同的磁铁学校。它给了我们真正最好的一个。
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引用次数: 0
Playing the genome card. 打基因组牌。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2020-03-01 Epub Date: 2019-12-24 DOI: 10.1080/01677063.2019.1706093
Ari Berkowitz

In the 1990s, prominent biologists and journalists predicted that by 2020 each of us would carry a genome card, which would allow physicians to access our entire genome sequence and routinely use this information to diagnose and treat common and debilitating conditions. This is not yet the case. Why not? Common and debilitating diseases are rarely caused by single-gene mutations, and this was recognized before these genome card predictions had been made. Debilitating conditions, including common psychiatric disorders, are typically caused either by rare mutations or by complex interactions of many genes, each having a small effect, and epigenetic, environmental, and microbial factors. In such cases, having a complete genome sequence may have limited utility in diagnosis and treatment. Genome sequencing technologies have transformed biological research in many ways, but had a much smaller effect than expected on treatments of common diseases. Thus, early proponents of genome sequencing effectively "mis-promised" its benefits. One reason may be that there are incentives for both biologists and journalists to tell simple stories, including the idea of relatively simple genetic causation of common, debilitating diseases. These incentives may have led to misleading predictions, which to some extent continue today. Although the Human Genome Project has facilitated biological research generally, the mis-promising of medical benefits, at least for treating common and debilitating disorders, could undermine support for scientific research over the long term.

在20世纪90年代,著名的生物学家和记者预测,到2020年,我们每个人都将携带一张基因组卡,这将使医生能够访问我们的整个基因组序列,并常规地使用这些信息来诊断和治疗常见的和使人衰弱的疾病。但事实并非如此。为什么不呢?常见的和使人衰弱的疾病很少是由单基因突变引起的,这在这些基因组卡预测做出之前就已经认识到。使人衰弱的疾病,包括常见的精神疾病,通常是由罕见的突变或许多基因的复杂相互作用引起的,每个基因都有很小的影响,以及表观遗传、环境和微生物因素。在这种情况下,拥有完整的基因组序列在诊断和治疗方面的作用可能有限。基因组测序技术在许多方面改变了生物学研究,但对普通疾病治疗的影响远小于预期。因此,基因组测序的早期支持者实际上“错误地承诺”了它的好处。一个原因可能是生物学家和记者都有动机讲述简单的故事,包括常见的、使人衰弱的疾病的相对简单的遗传原因的想法。这些激励措施可能导致了误导性的预测,这种预测在某种程度上延续至今。尽管人类基因组计划总体上促进了生物研究,但对医疗效益的错误承诺,至少在治疗常见和使人衰弱的疾病方面,可能会从长远来看削弱对科学研究的支持。
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引用次数: 0
Optogenetics: Illuminating neuronal circuits of memory formation. 光遗传学:照亮记忆形成的神经元回路。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2020-03-01 Epub Date: 2020-01-07 DOI: 10.1080/01677063.2019.1708352
Nadine Ehmann, Dennis Pauls

Optogenetics has revolutionized the field of neuroscience. Within the last decades the development and use of optogenetics gained enormous importance for the identification of functional synaptic connections. Employing optogenetic tools in anatomically defined pathways offers a straightforward strategy to demonstrate neuronal sufficiency, even during state-dependent activity within a neuronal network. Hunger, thirst, fatigue or motivation each impact an animal's behavior and determine the internal states that tune neuronal pathways to generate context-appropriate actions. In particular, higher order brain processes, such as learning and memory formation, are often state-dependent and here optogenetics can provide the means to identify and investigate the neuronal pathways involved. Our aim with this article is to focus on the possibilities and limitations of optogenetic tools for dissecting the neuronal circuits underlying learning and memory formation in Drosophila, while emphasizing what these approaches can tell us about neuronal circuit function in general.

光遗传学彻底改变了神经科学领域。在过去的几十年里,光遗传学的发展和应用对功能性突触连接的识别具有巨大的重要性。在解剖学定义的通路中使用光遗传学工具提供了一种直接的策略来证明神经元的充足性,即使在神经元网络中的状态依赖活动期间也是如此。饥饿、口渴、疲劳或动机都会影响动物的行为,并决定内部状态,从而调节神经元通路,产生与环境相适应的行动。特别是,更高阶的大脑过程,如学习和记忆的形成,通常是依赖于状态的,在这里光遗传学可以提供识别和研究所涉及的神经元通路的手段。我们这篇文章的目的是关注光遗传学工具在解剖果蝇学习和记忆形成背后的神经元回路方面的可能性和局限性,同时强调这些方法可以告诉我们关于神经元回路功能的一般信息。
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引用次数: 7
Toward nanoscale localization of memory engrams in Drosophila. 果蝇记忆印迹的纳米定位研究。
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2020-03-01 Epub Date: 2020-01-27 DOI: 10.1080/01677063.2020.1715973
Yoshinori Aso, Gerald M Rubin

The Mushroom Body (MB) is the primary location of stored associative memories in the Drosophila brain. We discuss recent advances in understanding the MB's neuronal circuits made using advanced light microscopic methods and cell-type-specific genetic tools. We also review how the compartmentalized nature of the MB's organization allows this brain area to form and store memories with widely different dynamics.

蘑菇体(MB)是果蝇大脑中储存联想记忆的主要位置。我们讨论了利用先进的光学显微镜方法和细胞类型特异性遗传工具来理解MB神经元回路的最新进展。我们还回顾了MB组织的分区性质如何使该大脑区域形成和存储具有广泛不同动态的记忆。
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引用次数: 7
Minimal selfhood 最小的自我
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2020-01-02 DOI: 10.1080/01677063.2019.1672680
R. D. V. Glasgow
Abstract This Perspective article outlines a concept of minimal selfhood. A central claim is that minimal selfhood is not dependent on possession of a brain, a nervous system or neurons. It will be argued instead that minimal selfhood requires intrinsically reflexive activity, specifically taking the form of self-maintenance, self-reproduction and self-containment. The implications of this in thinking about animal behavior and consciousness will be briefly discussed.
这篇透视文章概述了最小自我的概念。一个核心观点是,最低限度的自我并不依赖于拥有大脑、神经系统或神经元。相反,我们会认为,最低限度的自我需要内在的反身性活动,特别是采取自我维护、自我复制和自我包容的形式。这在思考动物行为和意识方面的意义将被简要讨论。
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引用次数: 0
Correction 修正
IF 1.9 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2019-10-02 DOI: 10.1080/01677063.2019.1673387
It has come to the authors’ attention that the original link for IowaFLI Tracker listed in the acknowledgements (www.journalofneurogenetics.org) no longer allows downloads of the software. The authors have uploaded an updated version of IowaFLI Tracker v3.0 to the github repository. This version includes minor changes to support analyzing multiple regions of interest (ROI) as well as improvement in video input and data output performance. IowaFLI Tracker v3.0 source code and stand-alone application can now be downloaded from https://github.com/IyengarAtulya/IowaFLI_tracker/releases/
作者注意到致谢(www.journalofneurogenetics.org)中列出的IowaFLI Tracker的原始链接不再允许下载该软件。作者已经将IowaFLI Tracker v3.0的更新版本上传到github存储库。这个版本包括一些小的变化,以支持分析多个感兴趣的区域(ROI),以及改进视频输入和数据输出性能。IowaFLI Tracker v3.0源代码和独立应用程序现在可以从https://github.com/IyengarAtulya/IowaFLI_tracker/releases/下载
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引用次数: 0
期刊
Journal of neurogenetics
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