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Integrated metabolomic and transcriptomic strategies to reveal adaptive mechanisms in barley plant during germination stage under waterlogging stress.
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-26 DOI: 10.1007/s10265-025-01616-w
Haiye Luan, Jiajia Gao, Yu Li, Xin Qu, Jinghan Yang, Xin Qian, Meng Xu, Miao Sun, Xiao Xu, Huiquan Shen, Yinghu Zhang, Gongneng Feng

Barley (Hordeum vulgare L.) is an important cereal crop used in animal feed, beer brewing, and food production. Waterlogging stress is one of the prominent abiotic stresses that has a significant impact on the yield and quality of barley. Seed germination plays a critical role in the establishment of seedlings and is significantly impacted by the presence of waterlogging stress. However, there is a limited understanding of the regulatory mechanisms of gene expression and metabolic processes in barley during the germination stage under waterlogging stress. This study aimed to investigate the metabolome and transcriptome responses in germinating barley seeds under waterlogging stress. The findings of the study revealed that waterlogging stress sharply decreased seed germination rate and seedling growth. The tolerant genotype (LLZDM) exhibited higher levels of antioxidase activities and lower malondialdehyde (MDA) content in comparison to the sensitive genotype (NN). In addition, waterlogging induced 86 and 85 differentially expressed metabolites (DEMs) in LLZDM and NN, respectively. Concurrently, transcriptome analysis identified 1776 and 839 differentially expressed genes (DEGs) in LLZDM and NN, respectively. Notably, the expression of genes associated with redox reactions, hormone regulation, and other biological processes were altered in response to waterlogging stress. Furthermore, the integrated transcriptomic and metabolomic analyses revealed that the DEGs and DEMs implicated in mitigating waterlogging stress primarily pertained to the regulation of pyruvate metabolism and flavonoid biosynthesis. Moreover, waterlogging might promote flavonoid biosynthesis by regulating 15 flavonoid-related genes and 10 metabolites. The present research provides deeper insights into the overall understanding of waterlogging-tolerant mechanisms in barley during the germination process.

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引用次数: 0
The relationships between photochemical reflectance index (PRI) and photosynthetic status in radish species differing in salinity tolerance.
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-24 DOI: 10.1007/s10265-025-01615-x
Elsayed Mohamed, Hajime Tomimatsu, Kouki Hikosaka

Since photosynthesis is highly sensitive to salinity stress, remote sensing of photosynthetic status is useful for detecting salinity stress during the selection and breeding of salinity-tolerant plants. To do so, photochemical reflectance index (PRI) is a potential measure to detect conversion of the xanthophyll cycle in photosystem II. Raphanus sativus var. raphanistroides is a wild radish species closely related to domesticated radish, and is distributed throughout the coastal regions of Japan, where it is thought to be salt tolerant. In this study, we raised wild and domesticated radishes under various salt conditions and assessed growth, photosynthetic status, and PRI. When grown at mild salt stress (50 mM NaCl), wild radish leaves showed photosynthetic activity levels comparable to control plants, whereas the photosynthetic activity of domesticated radish was suppressed. This result suggests that wild radishes are more salt-tolerant than domesticated radishes. Although photosynthetic rate and the photochemical quantum yield were significantly correlated with PRI in both species, the PRI resolution was insufficient to distinguish differences in salt tolerance between wild and domesticated radish. Wild radish had a lower maximum quantum yield (Fv/Fm) when grown under moderate salt stress (200 mM NaCl), suggesting chronic photoinhibition. The relationship between non-photochemical quenching (NPQ) and PRI was significant when leaves with chronic photoinhibition were eliminated but this relationship was not significant when they were included. In contrast, the relationship between photosynthesis and PRI was significant regardless of whether leaves displayed chronic photoinhibition or not. We conclude that PRI is useful to detect relatively large reductions in photosynthetic rate under salinity stress, and that care should be taken to evaluate NPQ from PRI.

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引用次数: 0
Extreme temperatures elicit the accumulation of cardiac glycoside and their genin units in Calotropis procera by altering the expression of transcripts involved in its biosynthesis. 极端温度通过改变参与其生物合成的转录本的表达,引起心糖苷及其苷元单位在卡罗tropis procera中的积累。
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-07 DOI: 10.1007/s10265-024-01612-6
Emma Anjali Minj, Akansha Pandey, Akhilesh Kumar, Tushar Pandey, Anjum Bano, Archana Kumari, Mallika Madan, Anshu Mohanta, Sanjeev Kanojiya, Vineeta Tripathi

Calotropis procera (Aiton) W.T. Aiton is a medicinal plant belonging to the family Apocynaceae as a core source of natural cardenolides. Cardiac glycosides (CGs) are steroid derivatives reported to have the ability to regulate cancer cell survival and death through multiple signaling pathways. Earlier stage-specific and wound-responsive accumulation of CGs and their genin units have already been reported. Recent cumulative evidences have implicated stress and defense response signaling in the production of secondary metabolite in plants. In this report, seasonal accumulation of CGs and its genin units have been explored along with their profiling under control vs stress conditions with a significant accumulation using LC-MS/MS. The study showed that Calotropis procera plants efficiently accumulate CGs and genin units in both winter and summer beside rainy season, as well as under thermal and salinity stress. Among the three cardenolides, the calotropagenin was accumulated more than coroglaucigenin and uzarigenin whereas CGs like calotropin, frugoside, uscharidin, uscharin, and asclepin were significantly accumulated in response to heat, cold and NaCl. Comparatively for hormonal treatments like methyl jasmonate and salicylic acid, targeted metabsolites showed upto twofold accumulation. Gene expression analysis of CG biosynthetic genes also validated the accumulation pattern of the targeted metabolite. This targeted metabolites accumulation enhances plant tolerance to adverse conditions. Gene expression analysis supports this strategy, emphasizing the plant's effective stress management. These findings significantly contribute to our understanding of how plants adapt to stress through the accumulation of metabolites, thereby enhancing their tolerance to challenging environmental conditions.

锦桐是夹竹桃科的一种药用植物,是天然心桂素的核心来源。心糖苷(Cardiac glycosides, CGs)是一种类固醇衍生物,据报道具有通过多种信号通路调节癌细胞存活和死亡的能力。早期特异性和伤口反应性cg及其基因原单位的积累已经有报道。近年来越来越多的证据表明,植物次生代谢物的产生与胁迫和防御反应信号有关。在本报告中,我们利用LC-MS/MS分析了CGs及其基因原单位在控制和胁迫条件下的季节性积累,并对其进行了分析。研究表明,在冬季和夏季雨季之外,以及在热胁迫和盐胁迫下,原花椒植物都能有效地积累CGs和genin单位。在热、冷和NaCl的作用下,三种桃香内酯中,降钙素的积累量大于红豆苷元和乌扎黄苷元,而降钙素、果苷元、uscharidin、uscharin和asclepin等cg的积累量显著。相对于激素处理,如茉莉酸甲酯和水杨酸,目标偏绝对化表现出高达两倍的积累。CG生物合成基因的基因表达分析也验证了目标代谢物的积累模式。这种有针对性的代谢物积累增强了植物对不利条件的耐受性。基因表达分析支持这一策略,强调植物有效的胁迫管理。这些发现有助于我们理解植物如何通过代谢物的积累来适应压力,从而增强它们对具有挑战性的环境条件的耐受性。
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引用次数: 0
Application of ultra-weak photon emission imaging in plant stress assessment. 超弱光子发射成像在植物胁迫评估中的应用。
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-05 DOI: 10.1007/s10265-024-01600-w
Ankush Prasad, Eliška Mihačová, Renuka Ramalingam Manoharan, Pavel Pospíšil

The oxidative damage induced by abiotic stress factors such as salinity, drought, extreme temperatures, heavy metals, pollution, and high irradiance has been studied in Arabidopsis thaliana. Ultra-weak photon emission (UPE) is presented as a signature reflecting the extent of the oxidation process and/or damage. It can be used to predict the physiological state and general health of plants. This study presents an overview of a potential research platform where the technique can be applied. The results presented can aid in providing invaluable information for developing strategies to mitigate abiotic stress in crops by improving plant breeding programs with a focus on enhancing tolerance. This study evaluates the applicability of charged couple device (CCD) imaging in evaluating plant stress and degree of damage and to discuss the advantages and limitations of the claimed non-invasive label-free tool.

研究了盐度、干旱、极端温度、重金属、污染和高辐照等非生物胁迫因素对拟南芥氧化损伤的影响。超弱光子发射(UPE)是反映氧化过程和/或损伤程度的标志。它可以用来预测植物的生理状态和总体健康状况。本研究概述了该技术可以应用的潜在研究平台。本文的研究结果可以为通过提高作物的耐受性来改善植物育种计划,从而减轻作物的非生物胁迫提供宝贵的信息。本研究评估了电荷耦合器件(CCD)成像在评估植物胁迫和损伤程度方面的适用性,并讨论了所声称的非侵入性无标签工具的优点和局限性。
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引用次数: 0
New Year's greetings 2025 from the Journal of Plant Research. 来自《植物研究杂志》的2025年新年祝福。
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-02 DOI: 10.1007/s10265-024-01605-5
Maki Katsuhara
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引用次数: 0
Female flowers with short ovaries in 'Lemon' cucumber (Cucumis sativus) plants and their progeny carrying the mm genotype (CS-ACS2 genes with c.97G > T mutations): a novel trimonoecious phenotype. 柠檬 "黄瓜(Cucumis sativus)植株及其携带 mm 基因型(CS-ACS2 基因的 c.97G > T 突变)的后代的雌花子房短小:一种新的雌雄同株表型。
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-01 Epub Date: 2024-10-11 DOI: 10.1007/s10265-024-01583-8
Seiji Yamasaki, Taimei Matsumoto, Yuina Tomota, Nanami Watanabe, Tatsuya Tanaka

Analysis of the sex expression in 10 'Lemon' (mmff) cucumber plants (Cucumis sativus L.), known to be andromonoecious, revealed that 3 plants produced female flowers with short ovaries, resembling bisexual flowers, after producing male and bisexual flowers. To investigate the heredity pattern governing these aberrant female flowers with short ovaries, F1 hybrid plants (MmFf) were generated through a cross between 'Dokanari-sennari' (MMFF) and 'Lemon' (mmff), and #4 (mmff) and #45 (mmFF) were meticulously selected from a pool of 45 F2 segregants. Analysis of the sex expression in both 10 F5 plants (mmff) derived from the #4 (mmff) and 10 F4 plants (mmFF) derived from the #45 (mmFF) revealed that 8-9 plants produced female flowers with short ovaries after producing male and bisexual flowers. Notably, no female flowers with short ovaries were produced in the plants carrying the M gene, such as 'Dokanari-sennari' (MMFF), 8 F1 hybrid plants (MmFf), and the 29 F2 segregants (M-F-,M-ff). Thus, female flowers with short ovaries may be produced in some 'Lemon' (mmff) cucumber plants and their progeny, particularly those carrying the mm genotype (CS-ACS2 genes with c.97G > T mutations), after the production of male and bisexual flowers. However, no clear genetic rules governing the occurrence of these female flowers with short ovaries were observed. This is the first report on trimonoecious cucumber plants displaying male flowers, bisexual flowers with short ovaries, and female flowers with short ovaries, all on the same plant, under the influence of the mm genotype (CS-ACS2 genes with c.97G > T mutations).

对已知为雌雄同株的 10 株'柠檬'(mmff)黄瓜植株(Cucumis sativus L.)的性别表达进行分析后发现,有 3 株植株在开出雄花和两性花后,又开出了类似两性花的短子房雌花。为了研究这些异常短子房雌花的遗传模式,通过'Dokanari-sennari'(MMFF)和'Lemon'(mmff)杂交产生了 F1 杂交植株(MmFf),并从 45 个 F2 分离株中精心挑选了 4 号(mmff)和 45 号(mmFF)。对 4 号(mmff)衍生的 10 个 F5 植株(mmff)和 45 号(mmFF)衍生的 10 个 F4 植株(mmFF)的性别表达进行分析后发现,8-9 个植株在开出雄花和两性花后,又开出了子房短的雌花。值得注意的是,携带 M 基因的植株,如'Dokanari-sennari'(MMFF)、8 株 F1 杂交植株(MmFf)和 29 株 F2 分离株(M-F-,M-ff),均未产生短子房雌花。因此,一些 "柠檬"(mmff)黄瓜植株及其后代,尤其是携带 mm 基因型(CS-ACS2 基因的 c.97G > T 突变)的植株,在开出雄花和两性花后,可能会开出带有短子房的雌花。然而,并没有观察到明确的遗传规律来控制这些短子房雌花的出现。这是首次报道雌雄同株三倍体黄瓜植株在毫米基因型(CS-ACS2基因c.97G > T突变)的影响下,在同一植株上出现雄花、短子房两性花和短子房雌花。
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引用次数: 0
Intricate intracellular kinase network regulates the Spodoptera lituta-derived elicitor response signaling in Arabidopsis. 错综复杂的细胞内激酶网络调控拟南芥中源自 Spodoptera lituta 的诱导剂反应信号。
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-01 Epub Date: 2024-10-17 DOI: 10.1007/s10265-024-01586-5
Yoshitake Desaki, Tasuku Kato, Keiichirou Nemoto, Akira Nozawa, Takuya Uemura, Naoya Ninomiya, Tatsuya Sawasaki, Gen-Ichiro Arimura

Plants defend themselves against herbivores by recognizing herbivore-derived elicitors and activating intracellular signaling. In Arabidopsis, the receptor-like kinase HAK1 recognizes the poly-saccharide elicitor (FrA) from Spodoptera litura larvae, leading to the expression of defense-related genes such as PDF1.2. During this process, the cytoplasmic kinase CRK2 phosphorylates PBL27, triggers the ERF13 expression via ethylene signaling and subsequently leads to PDF1.2 expression. Herein, we investigated four cytoplasmic kinases from the same receptor-like cytoplasmic kinase (RLCK) VII family as PBL27 that interacts with CRK2. Among them, PBL11, like PBL27, is phosphorylated by CRK2 and induces PDF1.2 expression but does not affect ERF13 expression. The weight gain of S. litura larvae on PBL11-deficient mutant plants was only slightly higher than that of wild-type plants, suggesting that PBL11 may function as a minor RLCK that supports the defense response.

植物通过识别来自食草动物的诱导物并激活细胞内信号转导来抵御食草动物。在拟南芥中,受体样激酶 HAK1 能识别来自 Spodoptera litura 幼虫的多糖诱导物(FrA),导致防御相关基因(如 PDF1.2)的表达。在此过程中,细胞质激酶 CRK2 磷酸化 PBL27,通过乙烯信号触发 ERF13 的表达,进而导致 PDF1.2 的表达。在此,我们研究了与PBL27同属受体样细胞质激酶(RLCK)VII家族并与CRK2相互作用的四种细胞质激酶。其中,PBL11与PBL27一样被CRK2磷酸化并诱导PDF1.2的表达,但不影响ERF13的表达。缺失 PBL11 的突变体植株上的 S. litura 幼虫的增重仅略高于野生型植株,这表明 PBL11 可能是支持防御反应的次要 RLCK。
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引用次数: 0
Secretory pedicels? Development, morphology, and histochemistry of articulated pedicels in Neotropical Malveae (Malvaceae). 分泌型花梗?新热带锦葵(锦葵科)铰接花梗的发育、形态和组织化学。
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-01 Epub Date: 2024-11-13 DOI: 10.1007/s10265-024-01592-7
Talvanis Lorenzetti Freire, Jefferson F de Oliveira, José Fernando A Baumgratz, Massimo G Bovini, Karen L G De Toni

In the Malveae tribe (Malvaceae), the axis supporting the flower has a joint at the upper third. This axis can be considered as an articulated pedicel, peduncle, peduncle-pedicel, or anthopodium. Such disparity in terminology reveals a duality in interpretation since this structure is classified as part of the inflorescence or part of the flower. In an effort to reach a consensus, this study aims to evaluate axes supporting the flowers of species from the Malveae tribe through ontogenetic, morphological, and histochemical analyses, using light microscopy and scanning electron microscopy. Ontogenetic analyses indicated that the axis supporting the flower is an articulated pedicel, which is divided into proximal and distal parts owing to the presence of the constriction (joint). Simultaneously, the articulated pedicel arises from the floral meristem, along with the establishment of the calyx and androecium. As development progresses, we observed frequent abscissions of the floral bud, along with the distal portion of the pedicel, at the joint. After this, the remaining proximal portion of the pedicel becomes secretory, as an extrafloral nectary, often foraged by ants of the genus Wasmannia. Thus, this ontogenetic analysis of the articulated pedicel helps in understanding its functionality and morphological variability, highlighting the importance of standardized terminology since it would lead to conceptual clarity in different studies. Additionally, this study, for the first time, reveals the presence of extrafloral nectaries on articulated pedicels in Malveae, a previously undocumented feature in Malveae and Malvaceae.

在马缨丹科(Malvaceae)中,支撑花朵的轴在上部三分之一处有一个关节。这种轴可以被视为有节的花梗、花序梗、花序梗-花梗或花梗。这种术语上的差异揭示了解释上的双重性,因为这种结构被归类为花序的一部分或花的一部分。为了达成共识,本研究旨在利用光学显微镜和扫描电子显微镜,通过本体发育、形态学和组织化学分析,评估支撑马尔维亚科物种花朵的轴。个体发育分析表明,支撑花的轴是有节花梗,由于缢缩(关节)的存在,花梗分为近端和远端两部分。在花萼和雌雄蕊形成的同时,有节花梗也从花分生组织中产生。随着发育的进行,我们观察到花芽和花梗的远端经常在关节处脱落。之后,剩余的花梗近端部分开始分泌,成为花外蜜腺,经常被黄蜂属蚂蚁觅食。因此,对有节花梗的本体分析有助于了解其功能和形态变异,突出了标准化术语的重要性,因为这将使不同研究的概念更加清晰。此外,本研究还首次揭示了马尔维亚科(Malveae)有节花梗上存在花外蜜腺,这是马尔维亚科(Malveae)和马尔维亚科(Malvaceae)以前未记载的特征。
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引用次数: 0
Correction to: Identification and functional analysis of the Dof transcription factor genes in sugar beet. 更正:甜菜中 Dof 转录因子基因的鉴定和功能分析。
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1007/s10265-024-01591-8
Yaqing Sun, Yongfeng Zhang, Caiyuan Jian, Tong Wang, Guoli Cao, Ningning Li, Guolong Li, Shaoying Zhang
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引用次数: 0
Soil properties, climate, and topography jointly determine plant community characteristics in marsh wetlands. 土壤特性、气候和地形共同决定了沼泽湿地的植物群落特征。
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2025-01-01 Epub Date: 2024-11-08 DOI: 10.1007/s10265-024-01593-6
Lin Yuan, Jingzhi Wang, Rong Liu, Yuqi Tang, Di Wu, Ri Jin, Weihong Zhu

Various environmental conditions influence the characteristics of plant communities within wetlands. Although the influence of key environmental factors on plant community traits within specific types of wetland ecosystems has been studied extensively, how they regulate plant communities across marsh wetland types remains poorly understood. We examined how environmental conditions influence plant communities in marsh wetlands along the lower Tumen River in northeastern China. We collected and analyzed data on the plant community characteristics (species, height, and coverage), soil physicochemical properties (organic carbon, inorganic nitrogen, and sulfur), and climatic and topographic factors (temperature, precipitation, and elevation) of 56 distinct marsh plots (29 herbaceous, 14 shrub, and 13 forested marshes) to understand how these variables correlate with plant community characteristics across marsh types. The wetland plant diversity varied, with the lowest, intermediate, and highest diversity occurring in herbaceous, shrub, and forested marshes, respectively. Climate, topography, and soil properties had crucial influences on plant diversity and biomass. Structural equation modeling showed that, in herbaceous marshes, plant biomass was primarily determined by soil and plant diversity, with climate exerting an indirect effect. In shrub marshes, soil, climate, and plant diversity directly influenced biomass. In forest marshes, soil and plant diversity directly affected biomass, whereas climate and topography had indirect effects. These findings highlight the complex interactions among environmental factors across marsh ecosystems and their influence mechanisms on biomass, aiding in formulating effective conservation and restoration strategies for marsh wetland ecosystems.

各种环境条件会影响湿地内植物群落的特征。尽管主要环境因子对特定类型湿地生态系统内植物群落特征的影响已被广泛研究,但它们如何调节不同类型沼泽湿地的植物群落仍鲜为人知。我们研究了环境条件如何影响中国东北图们江下游沼泽湿地的植物群落。我们收集并分析了 56 块不同沼泽地(29 块草本沼泽地、14 块灌木沼泽地和 13 块森林沼泽地)的植物群落特征(物种、高度和覆盖率)、土壤理化性质(有机碳、无机氮和硫)以及气候和地形因素(温度、降水和海拔)的数据,以了解这些变量如何与不同沼泽类型的植物群落特征相关联。湿地植物多样性各不相同,草本沼泽、灌木沼泽和森林沼泽的多样性分别最低、中等和最高。气候、地形和土壤特性对植物多样性和生物量有着至关重要的影响。结构方程模型显示,在草本沼泽中,植物生物量主要由土壤和植物多样性决定,气候有间接影响。在灌木沼泽中,土壤、气候和植物多样性直接影响生物量。在森林沼泽中,土壤和植物多样性直接影响生物量,而气候和地形则有间接影响。这些发现凸显了不同沼泽生态系统中环境因素之间复杂的相互作用及其对生物量的影响机制,有助于为沼泽湿地生态系统制定有效的保护和恢复策略。
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引用次数: 0
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Journal of Plant Research
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