Pub Date : 2024-09-01Epub Date: 2024-08-28DOI: 10.1007/s10265-024-01575-8
Miki Kubota, Kendo Mori, Hidetoshi Iida
Determining the mechanisms by which plants sense and respond to mechanical stimuli is crucial for unraveling the detailed processes by which plants grow and develop. Mechanosensitive (MS) channels, including MCA1 and its paralog MCA2 in Arabidopsis thaliana, may be essential for these processes. Although significant progress has been made in elucidating the physiological roles of MS channels, comprehensive insights into their expression dynamics remain elusive. Here, we summarize recent advancements and new data on the spatiotemporal expression patterns of the MCA1 and MCA2 genes, revealing their involvement in various developmental processes. Then, we describe findings from our study, in which the expression profiles of MCA1 and MCA2 were characterized in different plant organs at various developmental stages through histochemical analyses and semiquantitative RT‒PCR. Our findings revealed that MCA1 and MCA2 are preferentially expressed in young tissues, suggesting their pivotal roles in processes such as cell division, expansion, and mechanosensing. Lastly, we discuss the differential expression patterns observed in reproductive organs and trichomes, hinting at their specialized functions in response to mechanical cues. Overall, this review provides valuable insights into the dynamic expression patterns of MCA1 and MCA2, paving the way for future research on the precise roles of these genes in planta.
{"title":"Physiological roles of Arabidopsis MCA1 and MCA2 based on their dynamic expression patterns.","authors":"Miki Kubota, Kendo Mori, Hidetoshi Iida","doi":"10.1007/s10265-024-01575-8","DOIUrl":"10.1007/s10265-024-01575-8","url":null,"abstract":"<p><p>Determining the mechanisms by which plants sense and respond to mechanical stimuli is crucial for unraveling the detailed processes by which plants grow and develop. Mechanosensitive (MS) channels, including MCA1 and its paralog MCA2 in Arabidopsis thaliana, may be essential for these processes. Although significant progress has been made in elucidating the physiological roles of MS channels, comprehensive insights into their expression dynamics remain elusive. Here, we summarize recent advancements and new data on the spatiotemporal expression patterns of the MCA1 and MCA2 genes, revealing their involvement in various developmental processes. Then, we describe findings from our study, in which the expression profiles of MCA1 and MCA2 were characterized in different plant organs at various developmental stages through histochemical analyses and semiquantitative RT‒PCR. Our findings revealed that MCA1 and MCA2 are preferentially expressed in young tissues, suggesting their pivotal roles in processes such as cell division, expansion, and mechanosensing. Lastly, we discuss the differential expression patterns observed in reproductive organs and trichomes, hinting at their specialized functions in response to mechanical cues. Overall, this review provides valuable insights into the dynamic expression patterns of MCA1 and MCA2, paving the way for future research on the precise roles of these genes in planta.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"785-797"},"PeriodicalIF":2.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11393015/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142080626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-10DOI: 10.1007/s10265-024-01555-y
Rafael Becker, Renan Pittella, Fernando H Calderon-Quispe, Júlia de Moraes Brandalise, Rosana Farias-Singer, Rodrigo Bustos Singer
Reproductive isolation is one of the mechanisms of speciation. The two currently accepted subspecies of Parodia haselbergii (P. haselbergii subsp. haselbergii and P. haselbergii subsp. graessneri) were studied regarding flower traits, phenology, breeding systems and pollination. In addition, a principal component analysis with 18 floral characters and germination tests under controlled conditions were performed for both taxa. Pollination was studied in the field, in two localities of Southern Brazil. Pollinators were recorded through photos and film. Breeding system experiments were performed by applying controlled pollinations to plants excluded from pollinators. Both taxa mostly differ in asynchronous flowering periods, floral traits (including floral part measurements and nectar concentration) and pollinators. The flowers of both subspecies are functionally protogynous and perform remarkably long lifespans (≥ 15 days), both traits being novelties for Cactaceae. Whereas the reddish flowers of P. haselbergii subsp. haselbergii (nectar concentration: ca. 18%) are pollinated by hummingbirds of Thalurania glaucopis, the greenish flowers of P. haselbergii subsp. graessneri (nectar concentration: ca. 29%) are pollinated by Augochlora bees (Halictidae). Both subspecies are self-compatible, yet pollinator-dependent. The principal component analysis evidenced that both subspecies are separated, regarding flower traits. The seeds of both subspecies performed differently in the germination tests, but the best results were recovered at 20 °C and germination considerably decreased around 30 °C. In conclusion, all these results support that both taxa are in reproductive isolation, and can be treated as different species.
生殖隔离是物种分化的机制之一。我们对目前公认的两个 Parodia haselbergii 亚种(P. haselbergii subsp. haselbergii 和 P. haselbergii subsp.此外,还对这两个类群的 18 个花特征进行了主成分分析,并在受控条件下进行了发芽试验。在巴西南部的两个地方对授粉进行了实地研究。通过照片和胶片对传粉媒介进行了记录。通过对排除了传粉媒介的植物进行受控授粉,进行了育种系统实验。这两个亚种在非同步花期、花的特征(包括花部测量和花蜜浓度)和传粉者方面存在很大差异。两个亚种的花在功能上都是原生雌蕊,而且寿命极长(≥ 15 天),这两个特征都是仙人掌科植物的新特征。Haselbergii 亚种的红色花朵(花蜜浓度:约 18%)由蜂鸟 Thalurania glaucopis 授粉,而 P. haselbergii 亚种的绿色花朵(花蜜浓度:约 29%)则由蜜蜂 Augochlora(Halictidae)授粉。这两个亚种自交不亲和,但依赖授粉者。主成分分析表明,这两个亚种在花的特征方面是分开的。两个亚种的种子在萌发试验中表现不同,但在 20 °C 时萌发效果最好,而在 30 °C 时萌发效果明显降低。总之,所有这些结果都证明这两个分类群在繁殖上是隔离的,可以作为不同的物种对待。
{"title":"Reproductive biology as a tool to elucidate taxonomic delimitation: How different can two highly specialized subspecies of Parodia haselbergii (cactaceae) be?","authors":"Rafael Becker, Renan Pittella, Fernando H Calderon-Quispe, Júlia de Moraes Brandalise, Rosana Farias-Singer, Rodrigo Bustos Singer","doi":"10.1007/s10265-024-01555-y","DOIUrl":"10.1007/s10265-024-01555-y","url":null,"abstract":"<p><p>Reproductive isolation is one of the mechanisms of speciation. The two currently accepted subspecies of Parodia haselbergii (P. haselbergii subsp. haselbergii and P. haselbergii subsp. graessneri) were studied regarding flower traits, phenology, breeding systems and pollination. In addition, a principal component analysis with 18 floral characters and germination tests under controlled conditions were performed for both taxa. Pollination was studied in the field, in two localities of Southern Brazil. Pollinators were recorded through photos and film. Breeding system experiments were performed by applying controlled pollinations to plants excluded from pollinators. Both taxa mostly differ in asynchronous flowering periods, floral traits (including floral part measurements and nectar concentration) and pollinators. The flowers of both subspecies are functionally protogynous and perform remarkably long lifespans (≥ 15 days), both traits being novelties for Cactaceae. Whereas the reddish flowers of P. haselbergii subsp. haselbergii (nectar concentration: ca. 18%) are pollinated by hummingbirds of Thalurania glaucopis, the greenish flowers of P. haselbergii subsp. graessneri (nectar concentration: ca. 29%) are pollinated by Augochlora bees (Halictidae). Both subspecies are self-compatible, yet pollinator-dependent. The principal component analysis evidenced that both subspecies are separated, regarding flower traits. The seeds of both subspecies performed differently in the germination tests, but the best results were recovered at 20 °C and germination considerably decreased around 30 °C. In conclusion, all these results support that both taxa are in reproductive isolation, and can be treated as different species.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"863-875"},"PeriodicalIF":2.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141563576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-16DOI: 10.1007/s10265-024-01558-9
P E Shelke, A S Tamboli, S Surveswaran, S R Yadav, Y-S Choo, J H Pak, M M Lekhak
Dipcadi (Scilloideae: Asparagaceae) is a genus of bulbous monocots with approximately 40 species, of which 13 occur in India. Species delimitation within the genus has been troublesome hindering a comprehensive phylogenetic analysis. The most recent phylogeny of the subfamily Ornithogaloideae included six species of Dipcadi only from Africa. Here, we reconstructed the phylogeny of Ornithogaloideae including 23 accessions comprising 13 recognized taxa (11 species and two varieties) of Indian Dipcadi. The phylogenetic analyses were based on nucleotide sequences of three plastid regions (rbcL, matK and trnL-F spacer) and one nuclear region (ITS). Pseudogaltonia clavata exhibited sister relationship to Dipcadi. Our combined nuclear + plastid dataset analyses revealed a monophyletic Dipcadi with five clades, Clade I-V. Clade I, II and III included mainly Indian species whereas Clade V included mostly African species. Clade IV comprised D. serotinum. Clade I included nine taxa including our newly described species, D. mukaianum. The new species was phylogenetically placed with D. erythraeum, D. saxorum and D. ursulae. Morphologically, the species resembled D. montanum and D. ursulae but differed in characters such as tepal cohesion, number of ovules per locule and foul-smelling flowers. Clade II and III included 11 and six taxa, respectively. D. erythraeum which has a native range from Egypt to western India was found in Clades I and V. The widespread Dipcadi species, viz. D. erythraeum and D. serotinum showed polyphyly however, the monophyly of Dipcadi is established. Our studies suggest that additional molecular markers (plastid as well as nuclear) should be tested for their taxonomy utility. Further work on the historical biogeography of Dipcadi on the subfamily Ornithogaloideae with more genetic data will yield insights how aridification of the landscape would have shaped the evolution of the geographical clades.
Dipcadi(Scilloideae:天门冬科)是一个球茎单子叶植物属,有大约 40 个种,其中 13 个种分布在印度。该属的物种划分一直很麻烦,阻碍了全面的系统发育分析。鸟腥草亚科的最新系统发育只包括来自非洲的 6 个 Dipcadi 种。在本文中,我们重建了 Ornithogaloideae 的系统发育,其中包括 23 个登录品系,包括 13 个公认的印度 Dipcadi 类群(11 个种和 2 个变种)。系统发生分析基于三个质粒区(rbcL、matK 和 trnL-F spacer)和一个核区(ITS)的核苷酸序列。Pseudogaltonia clavata与Dipcadi是姊妹关系。我们对核素和质粒数据集的综合分析表明,Dipcadi 是单系的,有五个支系,即支系 I-V。支系 I、II 和 III 主要包括印度物种,而支系 V 主要包括非洲物种。支系 IV 包括 D. serotinum。支系 I 包括九个类群,其中包括我们新描述的物种 D. mukaianum。新种在系统发育上与 D. erythraeum、D. saxorum 和 D. ursulae 放在一起。在形态上,该种与 D. montanum 和 D. ursulae 相似,但在花被片内聚力、每子房室胚珠数和恶臭花等特征上有所不同。支系 II 和支系 III 分别包括 11 个和 6 个分类群。D. erythraeum 的原产地从埃及到印度西部,在支系 I 和支系 V 中被发现。D. erythraeum 和 D. serotinum 这两个广泛分布的 Dipcadi 物种表现出多系性,但 Dipcadi 的单系性已经确立。我们的研究表明,应该对其他分子标记(质粒和核标记)进行测试,以确定其分类效用。利用更多的遗传数据对鸟形目亚科中的双子叶植物的历史生物地理学进行进一步研究,将有助于深入了解地形的干旱化将如何影响地理支系的演化。
{"title":"Molecular phylogenetic reconstruction improves the taxonomic understanding of Indian Dipcadi (Asparagaceae) and reveals a new species from the bank of Hiranyakeshi River, Maharashtra, India.","authors":"P E Shelke, A S Tamboli, S Surveswaran, S R Yadav, Y-S Choo, J H Pak, M M Lekhak","doi":"10.1007/s10265-024-01558-9","DOIUrl":"10.1007/s10265-024-01558-9","url":null,"abstract":"<p><p>Dipcadi (Scilloideae: Asparagaceae) is a genus of bulbous monocots with approximately 40 species, of which 13 occur in India. Species delimitation within the genus has been troublesome hindering a comprehensive phylogenetic analysis. The most recent phylogeny of the subfamily Ornithogaloideae included six species of Dipcadi only from Africa. Here, we reconstructed the phylogeny of Ornithogaloideae including 23 accessions comprising 13 recognized taxa (11 species and two varieties) of Indian Dipcadi. The phylogenetic analyses were based on nucleotide sequences of three plastid regions (rbcL, matK and trnL-F spacer) and one nuclear region (ITS). Pseudogaltonia clavata exhibited sister relationship to Dipcadi. Our combined nuclear + plastid dataset analyses revealed a monophyletic Dipcadi with five clades, Clade I-V. Clade I, II and III included mainly Indian species whereas Clade V included mostly African species. Clade IV comprised D. serotinum. Clade I included nine taxa including our newly described species, D. mukaianum. The new species was phylogenetically placed with D. erythraeum, D. saxorum and D. ursulae. Morphologically, the species resembled D. montanum and D. ursulae but differed in characters such as tepal cohesion, number of ovules per locule and foul-smelling flowers. Clade II and III included 11 and six taxa, respectively. D. erythraeum which has a native range from Egypt to western India was found in Clades I and V. The widespread Dipcadi species, viz. D. erythraeum and D. serotinum showed polyphyly however, the monophyly of Dipcadi is established. Our studies suggest that additional molecular markers (plastid as well as nuclear) should be tested for their taxonomy utility. Further work on the historical biogeography of Dipcadi on the subfamily Ornithogaloideae with more genetic data will yield insights how aridification of the landscape would have shaped the evolution of the geographical clades.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"829-845"},"PeriodicalIF":2.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141620231","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-06-25DOI: 10.1007/s10265-024-01553-0
Katsuhiro Yoneoka, Tao Fujiwara, Toshifumi Kataoka, Kiyotaka Hori, Atsushi Ebihara, Noriaki Murakami
The fern independent gametophytes that can maintain populations by vegetative reproduction without conspecific sporophytes have been considered an unusual phenomenon found in some epiphytic or epilithic species of Hymenophyllaceae, Pteridaceae, Lomariopsidaceae, and Polypodiaceae. By chance, the discovery of mysterious strap-like gametophytes on Izu-Oshima Island, Japan, has led to the hypothesis that Hymenasplenium murakami-hatanakae, a fern species belonging to Aspleniaceae, can also form independent gametophytes. Our investigation revealed gametophyte populations of H. murakami-hatanakae on three islands in the Izu Islands. Based on chloroplast DNA analysis of the gametophyte and sporophyte populations, the gametophytes were found to be maintained by vegetative reproduction without a new supply of spores from sporophytes. A comparison of the surrounding vegetation at the collection sites showed that environmental factors such as light and humidity may influence the maintenance of gametophyte populations. These results clearly show that H. murakami-hatanakae is one of the ferns capable of forming independent gametophytes. This is the first report of independent gametophytes from the suborder Aspleniineae (eupolypod II). The discovery of the independent gametophyte within a phylogenetic lineage previously thought not to form independent gametophytes will provide important insights into the morphological and functional evolution of gametophytes in ferns.
蕨类植物的独立配子体可以在没有同种孢子体的情况下通过无性繁殖维持种群,这一直被认为是门叶蕨科(Hymenophyllaceae)、翼蕨科(Pteridaceae)、萝藦科(Lomariopsidaceae)和多肉蕨科(Polypodiaceae)中一些附生或附石物种的不寻常现象。一次偶然的机会,我们在日本伊豆大岛发现了神秘的带状配子体,从而提出了一个假设:蕨类植物中的一种名为村上蕨(Hymenasplenium murakami-hatanakae)的蕨类植物也能形成独立的配子体。我们在伊豆群岛的三个岛屿上发现了配子体种群。根据配子体和孢子体种群的叶绿体 DNA 分析,配子体是通过无性繁殖维持的,不需要孢子体提供新的孢子。对采集地点周围植被的比较表明,光照和湿度等环境因素可能会影响配子体种群的维持。这些结果清楚地表明,H. murakami-hatanakae是能够形成独立配子体的蕨类植物之一。这是在蕨亚目(Aspleniineae)( eupolypod II)中首次发现独立配子体。在一个以前被认为不会形成独立配子体的系统发育系中发现独立配子体,将对蕨类植物配子体的形态和功能演化提供重要的启示。
{"title":"Morphological and functional evolution of gametophytes in epilithic Hymenasplenium murakami-hatanakae (Aspleniaceae): The fifth family capable of producing the independent gametophytes.","authors":"Katsuhiro Yoneoka, Tao Fujiwara, Toshifumi Kataoka, Kiyotaka Hori, Atsushi Ebihara, Noriaki Murakami","doi":"10.1007/s10265-024-01553-0","DOIUrl":"10.1007/s10265-024-01553-0","url":null,"abstract":"<p><p>The fern independent gametophytes that can maintain populations by vegetative reproduction without conspecific sporophytes have been considered an unusual phenomenon found in some epiphytic or epilithic species of Hymenophyllaceae, Pteridaceae, Lomariopsidaceae, and Polypodiaceae. By chance, the discovery of mysterious strap-like gametophytes on Izu-Oshima Island, Japan, has led to the hypothesis that Hymenasplenium murakami-hatanakae, a fern species belonging to Aspleniaceae, can also form independent gametophytes. Our investigation revealed gametophyte populations of H. murakami-hatanakae on three islands in the Izu Islands. Based on chloroplast DNA analysis of the gametophyte and sporophyte populations, the gametophytes were found to be maintained by vegetative reproduction without a new supply of spores from sporophytes. A comparison of the surrounding vegetation at the collection sites showed that environmental factors such as light and humidity may influence the maintenance of gametophyte populations. These results clearly show that H. murakami-hatanakae is one of the ferns capable of forming independent gametophytes. This is the first report of independent gametophytes from the suborder Aspleniineae (eupolypod II). The discovery of the independent gametophyte within a phylogenetic lineage previously thought not to form independent gametophytes will provide important insights into the morphological and functional evolution of gametophytes in ferns.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"815-828"},"PeriodicalIF":2.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11393290/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141450740","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01DOI: 10.1007/s10265-024-01571-y
Louis P Ronse De Craene
{"title":"Correction: The interaction between heterochrony and mechanical forces as main driver of floral evolution.","authors":"Louis P Ronse De Craene","doi":"10.1007/s10265-024-01571-y","DOIUrl":"10.1007/s10265-024-01571-y","url":null,"abstract":"","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"719-720"},"PeriodicalIF":2.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142108608","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mechanical forces play a crucial role in plant development, including floral development. We previously reported that the phyllotactic variation in the staminate flowers of Ceratophyllum demersum may be caused by mechanical forces on the adaxial side of floral primordia, which may be a common mechanism in angiosperms. On the basis of this result, we developed a novel experimental system for analysis of the effects of mechanical forces on the floral meristem of Arabidopsis thaliana, aiming to induce morphological changes in flowers. In this experimental system, a micromanipulator equipped with a micro device, which is shaped to conform with the contour of the abaxial side of the young floral primordium, is used to exert contact pressure on a floral primordium. In the present study, we conducted contact experiments using this system and successfully induced diverse morphological changes during floral primordial development. In several primordia, the tip of the abaxial sepal primordium was incised with two or three lobes. A different floral primordium developed an additional sepal on the abaxial side (i.e., two abaxial sepals). Additionally, we observed the fusion of sepals in some floral primordia. These results suggest that mechanical forces have multiple effects on floral development, and changes in the tensile stress pattern in the cells of floral primordia are induced by the mechanical forces exerted with the micro device. These effects, in turn, lead to morphological changes in the floral primordia.
{"title":"Mechanical forces exerted on floral primordia with a novel experimental system modify floral development in Arabidopsis thaliana.","authors":"Akitoshi Iwamoto, Yuna Yoshioka, Ryoka Nakamura, Takeshi Yajima, Wakana Inoue, Kaho Nagakura","doi":"10.1007/s10265-024-01557-w","DOIUrl":"10.1007/s10265-024-01557-w","url":null,"abstract":"<p><p>Mechanical forces play a crucial role in plant development, including floral development. We previously reported that the phyllotactic variation in the staminate flowers of Ceratophyllum demersum may be caused by mechanical forces on the adaxial side of floral primordia, which may be a common mechanism in angiosperms. On the basis of this result, we developed a novel experimental system for analysis of the effects of mechanical forces on the floral meristem of Arabidopsis thaliana, aiming to induce morphological changes in flowers. In this experimental system, a micromanipulator equipped with a micro device, which is shaped to conform with the contour of the abaxial side of the young floral primordium, is used to exert contact pressure on a floral primordium. In the present study, we conducted contact experiments using this system and successfully induced diverse morphological changes during floral primordial development. In several primordia, the tip of the abaxial sepal primordium was incised with two or three lobes. A different floral primordium developed an additional sepal on the abaxial side (i.e., two abaxial sepals). Additionally, we observed the fusion of sepals in some floral primordia. These results suggest that mechanical forces have multiple effects on floral development, and changes in the tensile stress pattern in the cells of floral primordia are induced by the mechanical forces exerted with the micro device. These effects, in turn, lead to morphological changes in the floral primordia.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"763-771"},"PeriodicalIF":2.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141590585","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-08DOI: 10.1007/s10265-024-01552-1
Jaime Gasca-Pineda, Brenda Monterrubio, Guillermo Sánchez-de la Vega, Erika Aguirre-Planter, Rafael Lira-Saade, Luis E Eguiarte
The genetic diversity found in natural populations is the result of the evolutionary forces in response to historical and contemporary factors. The environmental characteristics and geological history of Mexico promoted the evolution and diversification of plant species, including wild relatives of crops such as the wild pumpkins (Cucurbita). Wild pumpkin species are found in a variety of habitats, evidencing their capability to adapt to different environments. Despite the potential value of wild Cucurbita as a genetic reservoir for crops, there is a lack of studies on their genetic diversity. Cucurbita radicans is an endangered species threatened by habitat destruction leading to low densities in small and isolated populations. Here, we analyze Genotype by Sequencing genomic data of the wild pumpkin C. radicans to evaluate the influence of factors like isolation, demographic history, and the environment shaping the amount and distribution of its genetic variation. We analyzed 91 individuals from 14 localities along its reported distribution. We obtained 5,107 SNPs and found medium-high levels of genetic diversity and genetic structure distributed in four main geographic areas with different environmental conditions. Moreover, we found signals of demographic growth related to historical climatic shifts. Outlier loci analysis showed significant association with the environment, principally with precipitation variables. Also, the outlier loci displayed differential changes in their frequencies in response to future global climate change scenarios. Using the results of genetic structure, outlier loci and multivariate analyses of the environmental conditions, we propose priority localities for conservation that encompass most of the genetic diversity of C. radicans.
自然种群中的遗传多样性是进化力量应对历史和当代因素的结果。墨西哥的环境特征和地质历史促进了植物物种的进化和多样化,包括农作物的野生近缘种,如野生南瓜(Cucurbita)。野生南瓜物种分布在不同的栖息地,这证明了它们适应不同环境的能力。尽管野生南瓜具有作为农作物基因库的潜在价值,但对其遗传多样性的研究却很缺乏。葫芦属(Cucurbita radicans)是一种濒危物种,由于栖息地受到破坏,导致其数量稀少,种群孤立。在此,我们分析了野生南瓜 C. radicans 的基因型测序基因组数据,以评估隔离、人口历史和环境等因素对其遗传变异数量和分布的影响。我们分析了来自其报告分布的 14 个地方的 91 个个体。我们获得了 5,107 个 SNPs,发现其遗传多样性和遗传结构处于中等偏上水平,分布在环境条件不同的四个主要地理区域。此外,我们还发现了与历史气候转变有关的人口增长信号。离群位点分析表明与环境,主要是降水变量有显著关联。此外,离群位点的频率在未来全球气候变化情景下也会出现不同的变化。利用遗传结构、离群位点和环境条件多元分析的结果,我们提出了优先保护的地点,这些地点涵盖了 C. radicans 的大部分遗传多样性。
{"title":"Conservation genomics of the wild pumpkin Cucurbita radicans in Central Mexico: The influence of a changing environment on the genetic diversity and differentiation of a rare species.","authors":"Jaime Gasca-Pineda, Brenda Monterrubio, Guillermo Sánchez-de la Vega, Erika Aguirre-Planter, Rafael Lira-Saade, Luis E Eguiarte","doi":"10.1007/s10265-024-01552-1","DOIUrl":"10.1007/s10265-024-01552-1","url":null,"abstract":"<p><p>The genetic diversity found in natural populations is the result of the evolutionary forces in response to historical and contemporary factors. The environmental characteristics and geological history of Mexico promoted the evolution and diversification of plant species, including wild relatives of crops such as the wild pumpkins (Cucurbita). Wild pumpkin species are found in a variety of habitats, evidencing their capability to adapt to different environments. Despite the potential value of wild Cucurbita as a genetic reservoir for crops, there is a lack of studies on their genetic diversity. Cucurbita radicans is an endangered species threatened by habitat destruction leading to low densities in small and isolated populations. Here, we analyze Genotype by Sequencing genomic data of the wild pumpkin C. radicans to evaluate the influence of factors like isolation, demographic history, and the environment shaping the amount and distribution of its genetic variation. We analyzed 91 individuals from 14 localities along its reported distribution. We obtained 5,107 SNPs and found medium-high levels of genetic diversity and genetic structure distributed in four main geographic areas with different environmental conditions. Moreover, we found signals of demographic growth related to historical climatic shifts. Outlier loci analysis showed significant association with the environment, principally with precipitation variables. Also, the outlier loci displayed differential changes in their frequencies in response to future global climate change scenarios. Using the results of genetic structure, outlier loci and multivariate analyses of the environmental conditions, we propose priority localities for conservation that encompass most of the genetic diversity of C. radicans.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"799-813"},"PeriodicalIF":2.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11393293/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141558989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The intervention of nectar robbers in plant pollination systems will cause some pollinators to modify their foraging behavior to act as secondary robbers, consequently adopting a mixed foraging strategy. The influence of nectar robbing on pollinator behavior may be affected by spatio-temporal difference of robbing intensity, and consequently, may have different effects on the pollination of host plants. However, whether and how the nectar robbing might influence pollinators under different robbing intensity still needs further investigation. In this study, Symphytum officinale was used to detect the effect of nectar robbers on pollinators under different robbing intensity as well as their effects on plant reproductive success. Six robbing levels and three bumblebees with mixed foraging behaviors were used to evaluate the effect of different robbing intensity on pollinator behavior, visitation rate, flower longevity and pollen deposition. Our results indicated that the robbing rate increased gradually with the proportion of robbed flowers, but which did not affect the frequency of legitimate visits. The increase of robbing rate promoted the corolla abscission, and then enhanced the self-pollen deposition, but which had no significant effect on cross-pollen deposition. These results indicate that the overall fitness of S. officinale was improved by combined self and cross-pollination modes when visited by both pollinators and nectar robbers simultaneously. Although nectar robbing is not uncommon, its consequences for pollination in the interaction web have not been well studied. Our results emphasize the significance of indirect impacts in mediating the adaptive outcomes of species interactions.
{"title":"Effect of robbing intensity on reproductive success of Symphytum officinale (Boraginaceae).","authors":"Nurbiye Ehmet, Tai-Hong Wang, Yi-Ping Zhang, Xiang Zhao, Kun Sun, Qin-Zheng Hou","doi":"10.1007/s10265-024-01536-1","DOIUrl":"10.1007/s10265-024-01536-1","url":null,"abstract":"<p><p>The intervention of nectar robbers in plant pollination systems will cause some pollinators to modify their foraging behavior to act as secondary robbers, consequently adopting a mixed foraging strategy. The influence of nectar robbing on pollinator behavior may be affected by spatio-temporal difference of robbing intensity, and consequently, may have different effects on the pollination of host plants. However, whether and how the nectar robbing might influence pollinators under different robbing intensity still needs further investigation. In this study, Symphytum officinale was used to detect the effect of nectar robbers on pollinators under different robbing intensity as well as their effects on plant reproductive success. Six robbing levels and three bumblebees with mixed foraging behaviors were used to evaluate the effect of different robbing intensity on pollinator behavior, visitation rate, flower longevity and pollen deposition. Our results indicated that the robbing rate increased gradually with the proportion of robbed flowers, but which did not affect the frequency of legitimate visits. The increase of robbing rate promoted the corolla abscission, and then enhanced the self-pollen deposition, but which had no significant effect on cross-pollen deposition. These results indicate that the overall fitness of S. officinale was improved by combined self and cross-pollination modes when visited by both pollinators and nectar robbers simultaneously. Although nectar robbing is not uncommon, its consequences for pollination in the interaction web have not been well studied. Our results emphasize the significance of indirect impacts in mediating the adaptive outcomes of species interactions.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"605-617"},"PeriodicalIF":2.7,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140175170","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-03-23DOI: 10.1007/s10265-024-01534-3
Thomas Kiebacher, Péter Szövényi
There is mounting evidence that reproductively isolated, but morphologically weakly differentiated species (so-called cryptic species) represent a substantial part of biological diversity, especially in bryophytes. We assessed the evolutionary history and ecological differentiation of a species pair, Dicranum brevifolium and D. septentrionale, which have overlapping ranges in the Holarctic. Despite their morphological similarity, we found similar genetic differentiation as between morphologically well-differentiated Dicranum species. Moreover, we detected gene tree discordance between plastid and nuclear markers, but neither of the two datasets resolved the two as sister species. The signal in trnL-trnF better reflects the morphological and ecological affinities and indicates a close relationship while ITS sequence data resolved the two taxa as phylogenetically distantly related. The discordance is probably unrelated to the ecological differentiation of D. septentrionale to colonise subneutral to alkaline substrates (vs. acidic in D. brevifolium), because this ability is rare in the genus and shared with D. acutifolium. This taxon is the closest relative of D. septentrionale according to the trnL-trnF data and does not share the discordance in ITS. We furthermore demonstrate that beside D. acutifolium, both D. septentrionale and D. brevifolium occur in the Alps but D. brevifolium is most likely rarer. Based on morphological analyses including factor analysis for mixed data of 45 traits we suggest treating the latter two as near-cryptic species and we recommend verifying morphological determinations molecularly.
越来越多的证据表明,生殖隔离但形态分化较弱的物种(所谓的隐生物种)代表了生物多样性的很大一部分,尤其是在红叶植物中。我们评估了一对物种(Dicranum brevifolium 和 D. septentrionale)的进化史和生态分化情况。尽管它们形态相似,但我们发现它们的遗传分化与形态分化良好的 Dicranum 物种之间相似。此外,我们还检测到质体标记与核标记之间的基因树不一致,但这两个数据集都没有将二者区分为姐妹种。trnL-trnF中的信号更好地反映了形态学和生态学上的亲缘关系,表明两者关系密切,而ITS序列数据则将这两个类群解析为系统发育关系较远的类群。这种不一致可能与 D. septentrionale 在亚中性至碱性基质(与 D. brevifolium 的酸性基质相比)上的生态分化无关,因为这种能力在该属中很少见,而且与 D. acutifolium 共享。根据 trnL-trnF 数据,该类群是 D. septentrionale 的近亲,而且不存在 ITS 不一致的情况。此外,我们还证明,除 D. acutifolium 外,阿尔卑斯山还分布有 D. septentrionale 和 D. brevifolium,但 D. brevifolium 可能更为罕见。根据形态学分析,包括对 45 个性状的混合数据进行因子分析,我们建议将后两种植物视为近隐性物种,并建议对形态学测定结果进行分子验证。
{"title":"Morphological, genetic and ecological divergence in near-cryptic bryophyte species widespread in the Holarctic: the Dicranum acutifolium complex (Dicranales) revisited in the Alps.","authors":"Thomas Kiebacher, Péter Szövényi","doi":"10.1007/s10265-024-01534-3","DOIUrl":"10.1007/s10265-024-01534-3","url":null,"abstract":"<p><p>There is mounting evidence that reproductively isolated, but morphologically weakly differentiated species (so-called cryptic species) represent a substantial part of biological diversity, especially in bryophytes. We assessed the evolutionary history and ecological differentiation of a species pair, Dicranum brevifolium and D. septentrionale, which have overlapping ranges in the Holarctic. Despite their morphological similarity, we found similar genetic differentiation as between morphologically well-differentiated Dicranum species. Moreover, we detected gene tree discordance between plastid and nuclear markers, but neither of the two datasets resolved the two as sister species. The signal in trnL-trnF better reflects the morphological and ecological affinities and indicates a close relationship while ITS sequence data resolved the two taxa as phylogenetically distantly related. The discordance is probably unrelated to the ecological differentiation of D. septentrionale to colonise subneutral to alkaline substrates (vs. acidic in D. brevifolium), because this ability is rare in the genus and shared with D. acutifolium. This taxon is the closest relative of D. septentrionale according to the trnL-trnF data and does not share the discordance in ITS. We furthermore demonstrate that beside D. acutifolium, both D. septentrionale and D. brevifolium occur in the Alps but D. brevifolium is most likely rarer. Based on morphological analyses including factor analysis for mixed data of 45 traits we suggest treating the latter two as near-cryptic species and we recommend verifying morphological determinations molecularly.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"561-574"},"PeriodicalIF":2.7,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11230997/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140194023","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Reevesia is an eastern Asian-eastern North American disjunction genus in the family Malvaceae s.l. and comprises approximately 25 species. The relationships within the genus are not well understood. Here, 15 plastomes representing 12 Reevesia species were compared, with the aim of better understanding the species circumscription and phylogenetic relationships within the genus and among genera in the family Malvaceae s.l. The 11 newly sequenced plastomes range between 161,532 and 161, 945 bp in length. The genomes contain 114 unique genes, 18 of which are duplicated in the inverted repeats (IRs). Gene content of these plastomes is nearly identical. All the protein-coding genes are under purifying selection in the Reevesia plastomes compared. The top ten hypervariable regions, SSRs, and the long repeats identified are potential molecular markers for future population genetic and phylogenetic studies. Phylogenetic analysis based on the whole plastomes confirmed the monophyly of Reevesia and a close relationship with Durio (traditional Bombacaceae) in subfamily Helicteroideae, but not with the morphologically similar genera Pterospermum and Sterculia (both of traditional Sterculiaceae). Phylogenetic relationships within Reevesia suggested that two species, R. pubescens and R. thyrsoidea, as newly defined, are not monophyletic. Six taxa, R. membranacea, R. xuefengensis, R. botingensis, R. lofouensis, R. longipetiolata and R. pycnantha, are suggested to be recognized.
{"title":"Plastome structure, phylogeny and evolution of plastid genes in Reevesia (Helicteroideae, Malvaceae).","authors":"Li-Yang Geng, Tian-Yi Jiang, Xin Chen, Qiang Li, Jian-Hui Ma, Wen-Xiang Hou, Chen-Qian Tang, Qin Wang, Yun-Fei Deng","doi":"10.1007/s10265-024-01547-y","DOIUrl":"10.1007/s10265-024-01547-y","url":null,"abstract":"<p><p>Reevesia is an eastern Asian-eastern North American disjunction genus in the family Malvaceae s.l. and comprises approximately 25 species. The relationships within the genus are not well understood. Here, 15 plastomes representing 12 Reevesia species were compared, with the aim of better understanding the species circumscription and phylogenetic relationships within the genus and among genera in the family Malvaceae s.l. The 11 newly sequenced plastomes range between 161,532 and 161, 945 bp in length. The genomes contain 114 unique genes, 18 of which are duplicated in the inverted repeats (IRs). Gene content of these plastomes is nearly identical. All the protein-coding genes are under purifying selection in the Reevesia plastomes compared. The top ten hypervariable regions, SSRs, and the long repeats identified are potential molecular markers for future population genetic and phylogenetic studies. Phylogenetic analysis based on the whole plastomes confirmed the monophyly of Reevesia and a close relationship with Durio (traditional Bombacaceae) in subfamily Helicteroideae, but not with the morphologically similar genera Pterospermum and Sterculia (both of traditional Sterculiaceae). Phylogenetic relationships within Reevesia suggested that two species, R. pubescens and R. thyrsoidea, as newly defined, are not monophyletic. Six taxa, R. membranacea, R. xuefengensis, R. botingensis, R. lofouensis, R. longipetiolata and R. pycnantha, are suggested to be recognized.</p>","PeriodicalId":16813,"journal":{"name":"Journal of Plant Research","volume":" ","pages":"589-604"},"PeriodicalIF":2.7,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140912577","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}