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Density Functional Theory Study of the Reductive Removal of Epoxide Oxygen From Small Polycyclic Aromatic Hydrocarbon Surface 小多环芳烃表面环氧氧还原脱除的密度泛函理论研究
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-06-16 DOI: 10.1002/poc.70022
Hiroshi Kawabata, Hiroto Tachikawa, Masahiro Shinoda

The conductivity of graphene oxide is significantly increases when it is reduced, and oxygen is removed. In this study, the mechanism of deoxygenation of the epoxide sites of small polycyclic aromatic hydrocarbons (PAHs) with triphenylphosphine (PPh3) was investigated using DFT. When PPh3 attacks the epoxide oxygen, the carbon–oxygen bond is immediately cleaved by electron transfer, and the oxygen is then abstracted to form triphenylphosphine oxide. The reaction was found to be single-step and different from that of three-membered ring ethers, which are not bound to PAHs. The activation energy for deoxygenation is approximately 20 kcal/mol, and the reaction is exothermic.

氧化石墨烯的电导率在还原、除氧时显著提高。本文研究了三苯基膦(PPh3)对小多环芳烃(PAHs)环氧化物位点的脱氧机理。当PPh3攻击环氧氧时,碳氧键立即通过电子转移被劈开,然后氧被抽离形成氧化三苯基膦。发现该反应是单步反应,与不与多环芳烃结合的三元环醚反应不同。脱氧反应的活化能约为20 kcal/mol,反应为放热反应。
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引用次数: 0
Assessing the Aromaticity of Fluorinated Benzene Derivatives Using New Descriptors Based on the Distributed Multipole Analysis (DMA) Partition of the Electron Density 基于电子密度分布多极分析(DMA)分配的新描述子评价氟化苯衍生物芳香性
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-06-11 DOI: 10.1002/poc.70024
Nathália M. P. Rosa, Matheus Máximo-Canadas, Itamar Borges Jr

We investigated the impact of fluorination on the aromaticity of 12 benzene-based compounds using a recently proposed new set of six descriptors (ACS Omega 2025, 10, 14, 14157–1417) based on the distributed multipole analysis (DMA) partition of the electron density. These descriptors allow the quantification of electron delocalization, an observable property related to aromaticity, and were defined from the components of the DMA quadrupole moment tensor Q2$$ {boldsymbol{Q}}_2 $$, the first electric multipole moment with out-of-plane contributions. We found a decrease in aromaticity that is related to the electron-withdrawing inductive effects of fluorine substituents, which modify the electron density distribution on the ring, particularly in regions adjacent to the substituents. The analysis by the Q2$$ {boldsymbol{Q}}_2 $$-based aromaticity descriptors revealed a strong correlation between electron distribution and electronic delocalization in fluorinated systems, confirming that fluorine substituents directly affect the symmetry and uniformity of electronic delocalization. A linear relationship between the Q2$$ {boldsymbol{Q}}_{mathbf{2}} $$ descriptors Q2zz,origin$$ {Q}_{2 zz, origin} $$ and the NICS1zz$$ NICS(1) zz $$ and ring current strength

我们利用最近提出的基于电子密度分布多极分析(DMA)划分的6个描述符(ACS Omega 2025、10、14、14157-1417)研究了氟化对12种苯基化合物芳香性的影响。这些描述符允许量化电子离域,这是一种与芳香性相关的可观察性质,并且是从DMA四极矩张量q2 $$ {boldsymbol{Q}}_2 $$的分量中定义的,这是第一个具有面外贡献的电多极矩。我们发现芳香性的降低与氟取代基的吸电子感应效应有关,氟取代基改变了环上的电子密度分布,特别是在取代基附近的区域。基于q2 $$ {boldsymbol{Q}}_2 $$芳香性描述符的分析揭示了氟化体系中电子分布与电子离域之间的强相关性,证实了氟取代基直接影响电子离域的对称性和均匀性。q2 $$ {boldsymbol{Q}}_{mathbf{2}} $$描述子q2zz,原点$$ {Q}_{2 zz, origin} $$和网卡1zz $$ NICS(1) zz $$和环电流强度(RCS)$$ RCS $$)描述符,表明这些描述符捕获了芳香性的相似方面。这些发现突出了新的芳构描述符对氟化化合物芳构性合理化的有效性和稳健性。
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引用次数: 0
Functionalization of Graphene Flake Surfaces With p-Substituted Phenyl Radicals: Estimation of Activation Energies From Hammett Substituent Constants 带p取代苯基自由基的石墨烯薄片表面功能化:由哈米特取代基常数估算活化能
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-06-10 DOI: 10.1002/poc.70025
Hiroshi Kawabata, Hiroto Tachikawa, Masahiro Shinoda

Chemical modification of flat graphene surfaces composed of pure sp2 carbons is extremely challenging. In this study, we used density functional theory to investigate the addition of phenyl radical derivatives to the surface of graphene flakes and clarified the effect of the nature of the substituents on the activation energy using Hammett plots. Circumcoronene was used as a model for the graphene flakes, and 13 para-substituted phenyl radicals were used as radical species. The activation energy consists of the distortion energies of the graphene flakes and radical species and the interaction energy between the graphene flakes and radical species. The interaction energy is 30%–40% of the activation energy. The interaction energy between the nitrophenyl radical and graphene flake is 3.1 kcal/mol, 2.3 kcal/mol lesser than that between the N,N-dimethylamino-phenyl radical and graphene flake. As the electron-withdrawing properties of the substituents increase, the interaction energy decreases, and consequently, the activation energy decreases. Furthermore, natural energy decomposition analysis shows that the intermolecular interactions are stabilized by charge transfer and electrostatic interactions, the magnitudes of which increase when increasing the Hammett constants of the substituents.

化学修饰由纯sp2碳组成的平坦石墨烯表面是极具挑战性的。在本研究中,我们利用密度泛函理论研究了苯基自由基衍生物在石墨烯薄片表面的加成,并利用Hammett图阐明了取代基性质对活化能的影响。以环冕烯作为石墨烯薄片的模型,以13个对取代苯基自由基作为自由基种。活化能由石墨烯薄片与自由基的畸变能和石墨烯薄片与自由基的相互作用能组成。相互作用能为活化能的30%-40%。硝基苯基自由基与石墨烯薄片的相互作用能为3.1 kcal/mol,比N,N-二甲氨基苯基自由基与石墨烯薄片的相互作用能小2.3 kcal/mol。随着取代基吸电子性质的增加,相互作用能降低,从而导致活化能降低。此外,自然能量分解分析表明,分子间相互作用是由电荷转移和静电相互作用稳定的,电荷转移和静电相互作用的大小随着取代基的Hammett常数的增加而增加。
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引用次数: 0
Reaction of N-Allenyl-1H-Pyrrole-2-Yl-Carbaldehydes With Hydroxylamine: A Quantum Chemical Insight Into the Mechanism and Substituent Influence n -烯基- 1h -吡咯-2-酰基-乙醛与羟胺的反应:机理和取代基影响的量子化学见解
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-06-01 DOI: 10.1002/poc.70023
Alexander S. Bobkov, Nikita V. Teplyashin, Svetlana V. Martynovskaya, Andrey V. Ivanov, Nadezhda M. Vitkovskaya

We report on a quantum chemical study (B2PLYP-D3BJ/6-311+G**//B3LYP/6-31+G*) of the mechanism of the reaction of N-allenyl-1H-pyrrole-2-yl-carbaldehydes with hydroxylamine in ethanol leading to pyrrolopyrazine oxides. The main focus is placed on unraveling the influence of the nature of the substituent in the fourth and fifth positions of the pyrrole ring on the kinetic characteristics of the key stages of the reaction, which are oximation and intramolecular cyclization. The aryl substituents are found to favor the reaction, in contrast to the alkyl substituents.

本文报道了n -烯基- 1h -吡咯-2-基-乙醛在乙醇中与羟胺反应生成吡咯吡嗪氧化物的量子化学研究(B2PLYP-D3BJ/6-311+G**//B3LYP/6-31+G*)。本研究的重点是揭示吡咯环第4位和第5位取代基的性质对反应关键阶段(模拟和分子内环化)动力学特征的影响。与烷基取代基相比,芳基取代基更有利于反应。
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引用次数: 0
The Fundamental Origin of the Polar Contribution to Heat Capacity Changes in Hydration in an Aqueous Solution 极性对水溶液水化热容变化贡献的基本来源
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-05-30 DOI: 10.1002/poc.70021
Maxim P. Evstigneev, Anastasiya O. Lantushenko

The current understanding of the nature of the physical factors making up the experimentally measured heat capacity change (CP$$ Delta {C}_P $$) for hydration/solvation occurring with net-neutral solutes at equilibrium in an aqueous solution is based on a large body of experimental work done from 1970 to 2000 which postulates the leading role of the hydrophobic effect (HE) in CP$$ Delta {C}_P $$. Other contributions have also been identified, but their relative role and nature are not well understood. In the present work, we provide a new insight into the nature of the fundamental terms contributing to CP$$ Delta {C}_P $$ for a wide variety of molecular processes in an aqueous solution. The crux of our findings is the identification of two leading physical factors, viz., the long known HE and the newly found non-specific solute-solvent van der Waals orientational interactions (Keesom force), making up the magnitude of experimental CP$$ Delta {C}_P $$ in a general case under the standard conditions of an aqueous solution, “classical” manifestation of HE and employing the model of a rigid net-neutral solute. As a consequence, one can now characterize the thermodynamic nature of various molecular interactions in a solution based on the level of CP$$ Delta {C}_P $$ from a single viewpoint, including the identification of the leading factor, understanding the interrelation of different factors, the interpretation of the sign of

目前对构成实验测量的水化/溶剂化的热容变化(∆cp $$ Delta {C}_P $$)的物理因素的性质的理解是基于1970年至2000年所做的大量实验工作,这些工作假设疏水效应(HE)在∆cp中起主导作用$$ Delta {C}_P $$。其他贡献也已确定,但它们的相对作用和性质尚未得到很好的了解。在目前的工作中,我们对水溶液中各种分子过程中产生∆C P $$ Delta {C}_P $$的基本术语的性质提供了新的见解。我们发现的关键是确定了两个主要的物理因素,即众所周知的HE和新发现的非特异性溶质-溶剂范德华斯取向相互作用(Keesom力)。在水溶液标准条件下的一般情况下,弥补实验∆C P $$ Delta {C}_P $$的大小,HE的“经典”表现,并采用刚性净中性溶质模型。因此,人们现在可以根据∆cp $$ Delta {C}_P $$的水平,从一个单一的观点来描述溶液中各种分子相互作用的热力学性质,包括确定主导因素,理解不同因素之间的相互关系,解释∆C P $$ Delta {C}_P $$的符号,并从分子角度解释其温度依赖性的起源。
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引用次数: 0
Hierarchical Molecular Structure–Based Method to Estimate the Normal Boiling Point of Aliphatic Oxygen-Containing Organic Compounds 基于层次分子结构的脂肪族含氧有机化合物正常沸点估算方法
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-05-29 DOI: 10.1002/poc.70020
Jincan Long, Chao-Tun Cao, Chenzhong Cao

In this work, a hierarchical molecular structure method (HMSM) was proposed to extract molecular descriptors. In this method, the molecular structure is divided into three hierarchies: the first hierarchy involves the contributions of the number of vertices (vertex number m and the sum of vertex number effect, SVNE); the second hierarchy involves the contributions of the vertex skeleton (odd-even index, OEI, and intramolecular polarization effect index, IMPEI); and the third hierarchy involves the contributions of the functional group (polarization effect index, PEI, and group influencing factor, GN). Using these six molecular descriptors, the normal boiling points (NBP) of aliphatic oxygen-containing organic compounds (AOCOCs), including alcohols, ethers, aldehydes, ketones, carboxylic acids, and esters, can be quantitatively correlated well. The results show that the average absolute percentage error (APPE) between the experimental and calculated NBP values for each series of AOCOCs is less than 1%. Based on the obtained QSPR models, the NBPs of some AOCOCs that have not been experimentally measured were predicted, including 14 alcohols, 25 ethers, 106 aldehydes, 72 ketones, 103 carboxylic acids, and 57 esters. Additionally, a QSPR model for all 518 AOCOCs was also derived, yielding an APPE value of only 1.35%, indicating that the HMSM-based QSPR model performs exceptionally well in the field of QSPR modeling. The specific contributions of functional groups to NBP were discussed and their order is as follows: COOH > OH > COO > C(O) > CHO > O.

本文提出了一种基于层次结构的分子描述符提取方法。在该方法中,分子结构分为三个层次:第一个层次涉及顶点数的贡献(顶点数m和顶点数效应的总和,SVNE);第二层涉及顶点骨架的贡献(奇偶指数OEI和分子内极化效应指数IMPEI);第三层次涉及官能团的贡献(极化效应指数PEI和基团影响因子GN)。利用这六个分子描述符,脂肪族含氧有机化合物(AOCOCs)的正常沸点(NBP),包括醇、醚、醛、酮、羧酸和酯,可以很好地定量相关。结果表明,各序列AOCOCs的实验值与NBP计算值的平均绝对百分比误差(APPE)小于1%。基于得到的QSPR模型,预测了一些未被实验测量的AOCOCs的NBPs,包括14个醇类、25个醚类、106个醛类、72个酮类、103个羧酸类和57个酯类。此外,还建立了518个AOCOCs的QSPR模型,其APPE值仅为1.35%,表明基于hmsm的QSPR模型在QSPR建模领域表现优异。讨论了各官能团对NBP的具体贡献,其顺序为: COOH >;·········································
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引用次数: 0
In-Depth Insights Into the Excited State Intramolecular Proton Transfer of Biologically Active Triazene Derivatives of Oxazole 生物活性恶唑三氮烯衍生物分子内激发态质子转移的深入研究
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-05-13 DOI: 10.1002/poc.70018
Ritu Payal, Manju K. Saroj, Sapan Kumar Jain, R. C. Rastogi

Phenyltriaz-1-en-1-yl-4-phenyloxazoles (PTOs) have been identified as photoinduced tautomeric photophysical probes. A series of PTOs has been synthesized and studied for their absorption and fluorescence spectral behavior in different solvent media with varying polarities. PTOs exhibited dual fluorescence behavior and large Stoke's shifts suggesting the presence of tautomeric forms (N* and T*). Dipole moments of PTOs in their excited states were calculated using Bakhshiev, Lippert–Mataga, Reichardt, and Kawski solvatochromic shift methods and were correlated with the theoretical dipole moments for N* and T* forms. The frontier molecular orbitals (HOMO-LUMO) and various physicochemical parameters (χ, η, σ, μp, ω, ΔEII, Nmax) were calculated using density functional theory (ground state-(CIS)/B3LYP/6–311++G(d,p)) computations to analyze the excited state intramolecular proton transfer (ESIPT) within these probes. The electrostatic potential (ESP) maps and Mulliken/NBO charges established the electrophilic and nucleophilic sites within molecules and intramolecular proton transfer from one end of the triazeno-bridge to the other end. DFT incorporated dispersion correction (D3(BJ)) accounts for significant van der Waals interactions. In vitro antioxidant activity of PTOs studied using 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging assay revealed them as potential antioxidants. Two multi-parametric scales based on solvent polarity, namely, (i) Catálan and (ii) Abboud-Kamlet-Taft, were employed to analyze the acidity and basicity of PTOs in ground and excited states to provide a plausible mechanism for ESIPT.

苯基三嗪-1-烯-1-基-4-苯氧唑(PTOs)是一种光诱导互变异构光物理探针。合成了一系列pto,并研究了它们在不同极性溶剂介质中的吸收和荧光光谱行为。pto表现出双重荧光行为和大的斯托克位移,表明存在互变异构形式(N*和T*)。利用Bakhshiev、Lippert-Mataga、Reichardt和Kawski溶剂致变色位移方法计算了pto激发态的偶极矩,并与N*和T*形式的理论偶极矩进行了关联。利用密度泛函数理论(基态-(CIS)/B3LYP/ 6-311 ++G(d,p))计算了探针的前沿分子轨道(HOMO-LUMO)和各种理化参数(χ, η, σ, μp, ω, ΔEII, Nmax),分析了探针内激发态质子转移(ESIPT)。静电电位图(ESP)和Mulliken/NBO电荷确定了分子内亲电和亲核位点以及分子内质子从三氮桥一端转移到另一端。DFT结合色散校正(D3(BJ))解释了显著的范德华相互作用。采用1,1-二苯基-2-苦味酰肼(DPPH)自由基清除实验研究了PTOs的体外抗氧化活性,揭示了其潜在的抗氧化剂作用。采用(i) Catálan和(ii) Abboud-Kamlet-Taft两个基于溶剂极性的多参数尺度来分析pto在基态和激发态的酸度和碱度,以提供ESIPT的合理机制。
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引用次数: 0
Computational Insight to Stereochemical Control on Conjugate Addition of Pyrroloalkenyl Thiol on Activated Alkyne 吡咯烯基硫醇在活化炔上共轭加成立体化学控制的计算研究
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-05-06 DOI: 10.1002/poc.70019
Akankasha Yadav, Sunita Siyak, Neelima Gupta

[3+2] Cycloaddition reaction of thiazolium ylide with activated acetylene does not yield the expected pyrrolothiazole, in contrast to a similar reaction of other N-cycloiminium ylides. Initially formed [3+2] cycloadduct undergoes thiazole ring opening followed by a thiol-yne type nucleophilic addition on second molecule of activated alkyne to give E,Z and/or Z,Z isomers of 1:2 adduct. We have investigated the reaction of thiazolium ylides with alkyl propiolate computationally at DFT level to understand the impact of stereochemical control on mechanistic aspects. Relatively more stable conformer of thiazolium ylide leads to a thermodynamically as well as kinetically preferred diastereomer of the cycloadduct having trans orientation of hydrogen atoms, which restricts the auto-oxidation and facilitates the ring opening. Formation of the Z or E isomer in subsequent thiol-yne reaction depends on the stereochemical control of the allene or allenoate intermediate. Experimentally observed reactivity of thiazolium ylide is computationally rationalized on the basis of the CDFT-based reactivity indices and the stereochemical control on reaction mechanism.

[3+2]与其他n -环亚胺类化合物的类似反应相比,噻唑类化合物与活化乙炔的环加成反应不能生成预期的吡咯洛噻唑。最初形成的[3+2]环加合物经过噻唑环开环,然后在第二个活化炔分子上进行巯基型亲核加成,得到1:2加合物的E,Z和/或Z,Z异构体。我们在DFT水平上研究了噻唑类化合物与丙酸烷基的反应,以了解立体化学控制对反应机理的影响。相对更稳定的噻唑酰化构象导致具有氢原子反取向的环加合物的热力学和动力学优选的非对映体,这限制了自氧化并有利于开环。在随后的巯基炔反应中,Z或E异构体的形成取决于对烯丙烯或烯丙酸中间体的立体化学控制。基于cdft的反应性指标和对反应机理的立体化学控制,对实验观察到的噻唑吡啶的反应性进行了计算合理化。
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引用次数: 0
Computational and Experimental Exploration of Di-Iodo-Based Schiff Bases as Esterase Inhibitors: Single Crystal and Spectral Insights 计算和实验探索二碘基希夫碱酯酶抑制剂:单晶和光谱的见解
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-04-25 DOI: 10.1002/poc.70017
Onur Erman Doğan, Muhammad Asam Raza, Mohd Farhan, Adnan Ashraf, Zeshan Ali Sandhu, Muhammad Hamayun, Erbil Ağar, Jahan Zaib Arshad, Necmi Dege, Shafiq Ur Rehman

The current study was aimed at synthesizing (E)-2-(((3-hydroxy-4-methylphenyl)imino)methyl)-4,6-diiodophenol (1) and (E)-3-((2-hydroxy-3,5-diiodobenzylidene)amino)-4-methylbenzoate (2). The modern spectral tools like UV–Vis, FTIR, and NMR were used to determine the structures, while a single X-ray diffraction approach was employed to prove that Compound 2 is orthorhombic and Compound 1 is triclinic. The 6-31G(d,p) basis set along B3LYP (hybrid functional) was used for the optimisation of synthesized compounds. The energy gaps between various orbitals were estimated using DFT calculations, and a comparative study in terms of different structural parameters was also conducted, which confirmed the correlation between XRD and DFT measurements. Two-dimensional fingerprint plots and Hirshfeld surface analysis were used to further elucidate the different interactions that stabilize the crystal. In vitro and in silico studies were employed to assess the biological potential of these molecules in terms of enzyme inhibition. Compound 2 depicted 74.17 ± 1.4% and 69.11 ± 1.3% inhibition against AChE and BChE, respectively. The docking score, as well as in vitro studies, demonstrated that Compound 2 is more potent than Compound 1 against acetylcholine esterase and butyrylcholine esterase.

本研究旨在合成(E)-2-((3-羟基-4-甲基苯基)亚氨基)甲基)-4,6-二碘苯酚(1)和(E)-3-((2-羟基-3,5-二碘多苄基)氨基)-4-甲基苯甲酸酯(2)。采用紫外可见光谱、红外光谱和核磁共振等现代光谱工具对其结构进行了测定,并采用单一x射线衍射方法证明了化合物2为正构体,化合物1为三斜体。利用B3LYP(杂化泛函)设置的6-31G(d,p)基对合成的化合物进行优化。利用DFT计算估算了不同轨道间的能隙,并对不同结构参数进行了对比研究,证实了XRD与DFT测量结果之间的相关性。利用二维指纹图谱和Hirshfeld表面分析进一步阐明了稳定晶体的不同相互作用。体外和计算机研究被用来评估这些分子在酶抑制方面的生物学潜力。化合物2对AChE和BChE的抑制作用分别为74.17±1.4%和69.11±1.3%。对接评分和体外实验表明,化合物2对乙酰胆碱酯酶和丁基胆碱酯酶的抑制作用强于化合物1。
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引用次数: 0
Oxidation Reaction of Dihydroazolopyridines: Quantum Chemical Study 二氢偶氮吡啶的氧化反应:量子化学研究
IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2025-04-25 DOI: 10.1002/poc.70016
Mariia O. Shyshkina, Serhiy M. Desenko

The quantum chemical study of the oxidation reaction of the 1,4-dihydropyridine and series of dihydroazolopyridines has been undertaken. The one-electron transfer processes as a key reaction stages and corresponding ionization potentials (IHetH2 and IHetH•) have been discussed. The azole ring effect on the electronic structure of the partially hydrogenated ring in the initial molecules and radicals as well as ionization potentials have been analyzed. The difference in the pyridine-like and pyrrole-like nitrogen atoms effect on the oxidation process has been observed.

对1,4-二氢吡啶与系列二氢偶氮吡啶的氧化反应进行了量子化学研究。讨论了作为关键反应阶段的单电子转移过程和相应的电离势(IHetH2和IHetH•)。分析了唑环对部分氢化环初始分子和自由基的电子结构及电离势的影响。观察了类吡啶氮原子和类吡咯氮原子对氧化过程影响的差异。
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引用次数: 0
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Journal of Physical Organic Chemistry
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