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Exploration of chemical interactions between Viscum combreticola Engl. and its hosts through a metabolic profiling approach and molecular networking 孔雀石间化学相互作用的探索。通过代谢分析方法和分子网络
3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-10-13 DOI: 10.1080/17429145.2023.2266511
Babra Moyo, Nikita Tawanda Tavengwa, Ian Dubery, Ntakadzeni Edwin Madala
Viscum combreticola Engl., an evergreen semi-parasitic mistletoe plant, is utilized in herbal medicines. Herein, a UHPLC-q-TOF-MS profiling and molecular networking approach were used to investigate the chemical interactions between V. combreticola and two of its host plants, Combretum erythrophyllum and Pseudolachnostylis maprouneifolia Pax. Moreover, in vitro grown V. combreticola seedlings were used to explore the host independence of the phytochemistry of these plants. The phytochemistry of V. combreticola was found to be independent and distinct from that of the host plants. Moreover, both mature V. combreticola and in vitro seedlings displayed diverse polyphenolic compounds but exhibited distinct metabolic profiles. Notably, the esterification of phenolic acids (hydroxycinnamic and benzoic acids) to quinic acid was a unique chemistry that was observed in both mature and in vitro grown V. combreticola. Beyond providing metabolic fingerprints of the studied samples, the UHPLC-q-TOF-MS and molecular networking effectively visualized plant-plant chemical relationships at a metabolite level.
英文:Viscum combreticola是一种常绿的半寄生槲寄生植物,用于草药。本文采用UHPLC-q-TOF-MS分析和分子网络方法,研究了红叶Combretum erythrophyllum和pseudoolachnostylis maprouneifolia Pax两种寄主植物间的化学相互作用。此外,利用体外培养的combreticola幼苗研究了这些植物的寄主独立性。结果表明,combreticola病原菌的植物化学与寄主植物的植物化学完全不同。此外,成熟的紫花苜蓿和离体幼苗均显示出不同的多酚化合物,但表现出不同的代谢谱。值得注意的是,酚酸(羟基肉桂酸和苯甲酸)酯化成奎宁酸是一种独特的化学反应,在成熟和体外生长的真菌中都可以观察到。除了提供所研究样品的代谢指纹图谱外,UHPLC-q-TOF-MS和分子网络还能在代谢物水平上有效地可视化植物与植物之间的化学关系。
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引用次数: 0
Phytochemical evaluation of the fruits and green biomass of determinate-type sweet pepper ( Capsicum annuum L. fasciculatum) grown in terrestrial bioregenerative life-support research facilities 陆地生物再生生命维持研究设施中生长的确定型甜椒果实和绿色生物量的植物化学评价
3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-10-13 DOI: 10.1080/17429145.2023.2268118
Éva Domokos-Szabolcsy, Tarek Alshaal, Judit Koroknai, Szilvia Kovács, Csaba Tóth, Gábor Csilléry, Zsuzsa Jókai, Anna Matkovits, Péter Makleit, Szilvia Veres, Miklós Gábor Fári
This study explores the potential feasibility of cultivating two determinate-type bell peppers, i.e. Hungarian Enigma Hot (HEH) and Hungarian Enigma Sweet (HES), in a ground bioregenerative life-support device. Fruits of the Hugarian Engima Sweet (HES) variety is advantageous for digestion due to it has thin cuticle and collenchyma at the same time the parenchyma of mesocarp of it is thin. β-carotene and caspanthin were the dominant carotenoids in both fruit varieties. Up to 55 tentative phytochemicals were not only in fruits but also in green juice processed from green leafy shoots. The green juice was also a rich source of protein (24–27% w/w) and a source of macro- and microelements. The findings of this study could hold valuable insights for the advancement of sustainable food production and resource utilization in space environments, with potential applications for long-duration space missions and beyond.
本研究探讨了在地面生物再生生命维持装置中培养两种确定型甜椒(Hungarian Enigma Hot, HEH)和Hungarian Enigma Sweet (HES)的潜在可行性。Hugarian Engima Sweet (HES)品种的果实具有较薄的角质层和厚壁组织,同时中果皮薄壁组织较薄,有利于消化。在两个水果品种中,β-胡萝卜素和卡斯潘素均为优势类胡萝卜素。不仅在水果中,而且在由绿叶嫩芽加工而成的绿色汁液中也有55种暂定植物化学物质。绿色果汁也是蛋白质的丰富来源(24-27% w/w)和宏量和微量元素的来源。这项研究的结果可能为在空间环境中推进可持续粮食生产和资源利用提供有价值的见解,并可能应用于长期空间任务及以后。
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引用次数: 0
Basic leucine zipper (bZIP) family in Asparagus ( Asparagus officinalis ): genome-wide identification, evolutionary, structure, collinearity, and expression analyses under abiotic stress at the seeding stage 芦笋(Asparagus officinalis)碱性亮氨酸拉链(bZIP)家族:全基因组鉴定、进化、结构、共线性和苗期非生物胁迫下的表达分析
3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-10-11 DOI: 10.1080/17429145.2023.2268627
Yu-Huan Li, Luo-Ming Zhang, Jun-Jie Xu, Ji-Xing Zhu, Lei Wang, Chang-Jian Chen, Haiyu Xu, Yi Zheng, Cai-Hua Li, Zhong-Sheng Mu, Wlodzimierz Zygmunt Krzesnski
Asparagus (Asparagus officinalis) is a crop with medicinal, horticultural, and nutritional uses. The basic leucine zipper (bZIP) family is a transcription factor family distributed throughout eukaryotes, including plants, and whose members participate in various biological processes, including plant growth, development, flowering, and stress responses. However, a few genome-wide studies of the bZIP family members have been reported. Here, 46 Asparagus bZIP members, named AobZIP01–AobZIP46, were identified from the reference genome via PFAM search and could be divided into 14 subgroups which were shown to be similar via motif and gene structure analysis. The molecular evolution, motif, and gene structure comparative analysis between A. officinalis and Arabidopsis indicated the accuracy of AobZIP member identification. Additionally, the cis-acting elements of the AobZIP members revealed that they might be associated with plant hormones and responses to abiotic stress. The collinear analysis predicted that the function of AobZIP members might be comparable to that of other species. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that AobZIP genes were enriched in the abscisic acid (ABA) pathway. Furthermore, the tissue-specific expression at the seedling stage revealed that root tissue could be used as a target tissue because of its high expression level. The expression of AobZIP genes determined by quantitative real-time PCR under abiotic stress at the seeding stage revealed that some AobZIP members could be candidate genes for plant breeding. This study offers insights for future research in improving the abiotic stress resistance of asparagus utilizing the AobZIP genes.
芦笋(Asparagus officinalis)是一种具有药用、园艺和营养用途的作物。碱性亮氨酸拉链(basic leucine zipper, bZIP)家族是一个分布于包括植物在内的真核生物中的转录因子家族,其成员参与植物生长、发育、开花和胁迫反应等多种生物过程。然而,对bZIP家族成员的全基因组研究已被报道。通过PFAM检索,从参考基因组中鉴定出46个芦笋bZIP成员,命名为AobZIP01-AobZIP46,并通过基序和基因结构分析将其划分为14个亚群。通过对南麻和拟南芥的分子进化、基序和基因结构的比较分析,验证了AobZIP成员鉴定的准确性。此外,AobZIP成员的顺式作用元件揭示了它们可能与植物激素和对非生物胁迫的反应有关。共线分析预测AobZIP成员的功能可能与其他物种相当。京都基因与基因组百科全书(KEGG)富集分析表明,AobZIP基因在脱落酸(ABA)途径中富集。此外,在苗期的组织特异性表达表明,根组织具有高表达水平,可以作为靶组织。通过实时荧光定量PCR检测苗期AobZIP基因在非生物胁迫下的表达情况,发现AobZIP成员可能是植物育种的候选基因。本研究为今后利用AobZIP基因提高芦笋非生物抗逆性的研究提供了思路。
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引用次数: 0
The seaweed Ascophyllum nodosum -based biostimulant enhances salt stress tolerance in rice ( Oryza sativa L.) by remodeling physiological, biochemical, and metabolic responses 以紫菜Ascophyllum nodosum为基础的生物刺激素通过重塑水稻的生理、生化和代谢反应来增强其耐盐性
3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-10-05 DOI: 10.1080/17429145.2023.2266514
Raheel Shahzad, Putri Widyanti Harlina, Pedro P. Gallego, Jaume Flexas, Mohamed Ewas, Xiang Leiwen, Agung Karuniawan
This study explores the role of a biostimulant derived from the seaweed Ascophyllum nodosum (AN) in mitigating salt stress in rice plants. The weekly (S+W) and biweekly (S+B) biostimulant treatments exhibited enhanced shoot and root biomass, maintained ionic balance, and increased pigment content (total chlorophyll increased by 26.35% and 31%, carotenoids by 11.90% and 16.67% in S+W and S+B treatments, respectively) compared to untreated salt-stressed plants (CS). Improved gas exchange parameters and PSII efficiency were observed in S+W and S+B treatments. AN-biostimulant treatments mitigated salt-induced oxidative stress by positively regulating the antioxidant defense system. Notably, a strong negative correlation was observed between antioxidants and oxidative markers. Furthermore, AN-biostimulant treatments induced key metabolites (organic acids, sugars, amino acids, flavonoids), emphasizing the integrated role of multiple pathways in enhancing salt tolerance in rice. These findings highlight the potential of AN biostimulants as eco-friendly tools for crop enhancement in challenging environments.
本研究探讨了从海藻中提取的一种生物刺激素(Ascophyllum nodosum)在缓解水稻盐胁迫中的作用。与未处理的盐胁迫植物(CS)相比,每周(S+W)和双周(S+B)生物刺激素处理提高了茎和根生物量,保持了离子平衡,提高了色素含量(S+W和S+B处理的总叶绿素分别提高了26.35%和31%,类胡萝卜素分别提高了11.90%和16.67%)。S+W和S+B处理改善了气体交换参数和PSII效率。an -生物刺激治疗通过正向调节抗氧化防御系统减轻盐诱导的氧化应激。值得注意的是,抗氧化剂与氧化标志物之间存在很强的负相关。此外,an生物刺激处理诱导了关键代谢产物(有机酸、糖、氨基酸、类黄酮),强调了多种途径在提高水稻耐盐性中的综合作用。这些发现突出了AN生物刺激剂作为具有挑战性环境下作物增产的环保工具的潜力。
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引用次数: 0
ZmMPK6-1 positively regulates maize resistance to E. turcicum through enhancing ZmERF061 activity ZmMPK6-1通过增强ZmERF061活性正向调节玉米对黄芽孢杆菌的抗性
3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-09-29 DOI: 10.1080/17429145.2023.2261772
Liangyu Jiang, Mingrui Li, Xiaoyue Liu, Zixin Zhang, Zhenyuan Zang
Northern corn leaf blight (NCLB) is one of the most important foliar disease in maize, which leads to serious yield losses. It is necessary to identify resistance genes in order to control NCLB. Mitogen-activated protein kinase (MAPK) cascades play important roles in plant defense reactions. Ethylene-response factor (ERF) is involved in plant disease resistance in maize through phosphorylation by MAPK signaling pathway. Here, we found that ZmMPK6-1 positively regulates maize resistance against E. turcicum through enhancing the expression of defense-related genes and enzyme activities. Moreover, ZmMPK6-1 can interact with ZmERF061 which enhanced the transcriptional activation activity of ZmERF061. Taken together, our findings indicated that ZmMPK6-1 would act through improving ZmERF061 transcriptional activation activity to induce defensin gene expression in regulating the maize resistance against E. turcicum. These results revealed the molecular mechanism of ZmMPK6-1-ZmERF061 signaling pathway in response to E. turcicum, which is useful to maize E. turcicum resistance breeding.
北方玉米叶枯病(NCLB)是玉米重要的叶面病害之一,造成严重的产量损失。为了控制NCLB,有必要鉴定耐药基因。丝裂原活化蛋白激酶(MAPK)级联反应在植物防御反应中起重要作用。乙烯反应因子(ERF)通过MAPK信号通路磷酸化参与玉米植株抗病过程。本研究发现,ZmMPK6-1通过增强防御相关基因的表达和酶活性,正向调节玉米对黄芽孢杆菌的抗性。ZmMPK6-1可以与ZmERF061相互作用,增强了ZmERF061的转录激活活性。综上所述,ZmMPK6-1可能通过提高ZmERF061转录激活活性,诱导防御素基因表达,调控玉米对黄芽孢杆菌的抗性。这些结果揭示了ZmMPK6-1-ZmERF061信号通路响应黄曲菌的分子机制,为玉米黄曲菌抗性育种提供参考。
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引用次数: 0
Comparative transcriptome analysis of the resistance mechanism of Hemerocallis citrina Baroni to Puccinia hemerocallidis infection 黄萱草对萱草锈病抗性机制的比较转录组分析
3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-09-25 DOI: 10.1080/17429145.2023.2260410
Lijie Zhang, Lingling Zhou, Jiali Meng, Shaojun Wu, Shuhua Liu, Nianfu Yang, Fufa Tian, Xiang Yu
Hemerocallis citrina Baroni (daylily) is an important cash crop in many regions of China. Daylily rust caused by Puccinia hemerocallidis (Ph) is a major disease in H. citrina. Rust infection on the leaves of two resistant and susceptible varieties of H. citrina was examined. Transcriptome sequencing and defense enzyme activity were used to analyze the differential expression of related genes after 0, 72, 144, 192, and 288 h, to reveal the response mechanism of H. citrina to rust infection and screen-related resistance genes. The results suggested that 72 h after Ph infection was the key time point for determining differences between resistant and susceptible varieties. DEGs were significantly enriched in phenylpropanoid biosynthesis, plant–pathogen interaction, plant hormone signal transduction, and the MAPK signaling pathway. TFs WRKY33 and CYP98A are key genes closely related to the disease-resistance response of H. citrina. This study is the first large-scale transcriptomic analysis of H. citrina.
黄花菜(萱草)是中国许多地区重要的经济作物。萱草锈病是由萱草锈病引起的一种主要病害。研究了2个柑桔抗感品种叶片的锈病情况。利用转录组测序和防御酶活性分析相关基因在0、72、144、192和288 h后的差异表达,揭示黄颡鱼对锈病的反应机制和筛选相关抗性基因。结果表明,Ph侵染后72h是判断耐感品种差异的关键时间点。deg在苯丙素生物合成、植物-病原体相互作用、植物激素信号转导和MAPK信号通路中显著富集。TFs WRKY33和CYP98A是与黄螺旋藻抗病反应密切相关的关键基因。本研究首次对黄颡鱼进行了大规模的转录组学分析。
{"title":"Comparative transcriptome analysis of the resistance mechanism of <i>Hemerocallis citrina</i> Baroni to <i>Puccinia hemerocallidis</i> infection","authors":"Lijie Zhang, Lingling Zhou, Jiali Meng, Shaojun Wu, Shuhua Liu, Nianfu Yang, Fufa Tian, Xiang Yu","doi":"10.1080/17429145.2023.2260410","DOIUrl":"https://doi.org/10.1080/17429145.2023.2260410","url":null,"abstract":"Hemerocallis citrina Baroni (daylily) is an important cash crop in many regions of China. Daylily rust caused by Puccinia hemerocallidis (Ph) is a major disease in H. citrina. Rust infection on the leaves of two resistant and susceptible varieties of H. citrina was examined. Transcriptome sequencing and defense enzyme activity were used to analyze the differential expression of related genes after 0, 72, 144, 192, and 288 h, to reveal the response mechanism of H. citrina to rust infection and screen-related resistance genes. The results suggested that 72 h after Ph infection was the key time point for determining differences between resistant and susceptible varieties. DEGs were significantly enriched in phenylpropanoid biosynthesis, plant–pathogen interaction, plant hormone signal transduction, and the MAPK signaling pathway. TFs WRKY33 and CYP98A are key genes closely related to the disease-resistance response of H. citrina. This study is the first large-scale transcriptomic analysis of H. citrina.","PeriodicalId":16830,"journal":{"name":"Journal of Plant Interactions","volume":"43 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135864483","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Intercropping of Hordeum vulgare L. and Lupinus angustifolius L. causes the generation of prenylated flavonoids in Lupinus angustifolius L. 黄花Hordeum L. and Lupinus angustifolius L.间作可使狼疮产生烯酰化黄酮类化合物。
3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-09-13 DOI: 10.1080/17429145.2023.2255039
Ida K. L. Andersen, Lars O. Dragsted, Jim Rasmussen, Inge S. Fomsgaard
In agricultural production, intercropping is a widely used system with many benefits. Lupin (Lupinus angustifolius L.) is a legume that contains a large variety of plant secondary metabolites, which have multiple functions in the plant, e.g. signalling, nodulation and stress response. An untargeted metabolomics approach was applied to investigate how the metabolome of lupin was affected by intercropped barley (Hordeum vulgare L.). The only primary metabolite of lupin affected by intercropping was tryptophan. Several secondary metabolites were affected by intercropping in lupin, and five flavonoids were annotated hereof. The flavonoid levels were increased, and tryptophan levels decreased in lupin when intercropped. Two flavonoids are prenylated, and prenylated flavonoids are believed to play a role in the plant’s stress response. Furthermore, flavonoids are involved in plant defence and the nodulation process. Thus the present flavonoids may affect regulation of lupin N2-fixation activity.
在农业生产中,间作是一种应用广泛、效益显著的制度。Lupin (Lupinus angustifolius L.)是一种含有多种植物次生代谢物的豆科植物,在植物中具有多种功能,如信号传导、结瘤和应激反应。采用非靶向代谢组学方法研究间作大麦对罗苹代谢组学的影响。间作影响的主要代谢物只有色氨酸。间作对罗苹的几种次生代谢产物有影响,并对5种黄酮类化合物进行了注释。间作增加了黄酮类化合物含量,降低了色氨酸含量。两种黄酮类化合物是烯酰化的,烯酰化的黄酮类化合物被认为在植物的应激反应中起作用。此外,黄酮类化合物还参与植物防御和结瘤过程。由此可见,黄酮类化合物可能对罗苹固氮活性有调控作用。
{"title":"Intercropping of <i>Hordeum vulgare</i> L. and <i>Lupinus angustifolius</i> L. causes the generation of prenylated flavonoids in <i>Lupinus angustifolius</i> L.","authors":"Ida K. L. Andersen, Lars O. Dragsted, Jim Rasmussen, Inge S. Fomsgaard","doi":"10.1080/17429145.2023.2255039","DOIUrl":"https://doi.org/10.1080/17429145.2023.2255039","url":null,"abstract":"In agricultural production, intercropping is a widely used system with many benefits. Lupin (Lupinus angustifolius L.) is a legume that contains a large variety of plant secondary metabolites, which have multiple functions in the plant, e.g. signalling, nodulation and stress response. An untargeted metabolomics approach was applied to investigate how the metabolome of lupin was affected by intercropped barley (Hordeum vulgare L.). The only primary metabolite of lupin affected by intercropping was tryptophan. Several secondary metabolites were affected by intercropping in lupin, and five flavonoids were annotated hereof. The flavonoid levels were increased, and tryptophan levels decreased in lupin when intercropped. Two flavonoids are prenylated, and prenylated flavonoids are believed to play a role in the plant’s stress response. Furthermore, flavonoids are involved in plant defence and the nodulation process. Thus the present flavonoids may affect regulation of lupin N2-fixation activity.","PeriodicalId":16830,"journal":{"name":"Journal of Plant Interactions","volume":"13 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135742230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
More than trichomes and acylsugars: the role of jasmonic acid as mediator of aphid resistance in tomato 超过毛状体和酰基糖:茉莉酸作为番茄抗蚜介质的作用
3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-09-11 DOI: 10.1080/17429145.2023.2255597
Lidia Blanco-Sánchez, Rosario Planelló, Victoria Ferrero, Rafael Fernández-Muñoz, Eduardo de la Peña, Juan Antonio Díaz Pendón
ABSTRACT This study investigates the impact of priming on the resistance of tomato plants to the potato aphid Macrosiphum euphorbiae, focusing on the role of glandular trichomes. Glandular trichomes are specific hairs that provide protection to tomato plants against herbivorous insects. The experimental priming conducted in this study revealed that prior infestation by Spodoptera littoralis caterpillars increased the plant's resistance against M. euphorbiae, pointing at the jasmonic acid (JA) signaling pathway in regulating this plant-aphid interaction. Glandular trichomes type IV were effective against aphids regardless of the previous infestation. Using JA-deficient tomato (spr2), we observed that M. euphorbiae multiplication increased, while the number of aphids on salicylic -deficient NahG plants was lower than in the wildtype Moneymaker. These findings emphasize the crucial role of the JA signaling pathway in tomato plant resistance to aphids and the importance of glandular trichomes to enhance plant defences against pests.
{"title":"More than trichomes and acylsugars: the role of jasmonic acid as mediator of aphid resistance in tomato","authors":"Lidia Blanco-Sánchez, Rosario Planelló, Victoria Ferrero, Rafael Fernández-Muñoz, Eduardo de la Peña, Juan Antonio Díaz Pendón","doi":"10.1080/17429145.2023.2255597","DOIUrl":"https://doi.org/10.1080/17429145.2023.2255597","url":null,"abstract":"ABSTRACT\u0000 This study investigates the impact of priming on the resistance of tomato plants to the potato aphid Macrosiphum euphorbiae, focusing on the role of glandular trichomes. Glandular trichomes are specific hairs that provide protection to tomato plants against herbivorous insects. The experimental priming conducted in this study revealed that prior infestation by Spodoptera littoralis caterpillars increased the plant's resistance against M. euphorbiae, pointing at the jasmonic acid (JA) signaling pathway in regulating this plant-aphid interaction. Glandular trichomes type IV were effective against aphids regardless of the previous infestation. Using JA-deficient tomato (spr2), we observed that M. euphorbiae multiplication increased, while the number of aphids on salicylic -deficient NahG plants was lower than in the wildtype Moneymaker. These findings emphasize the crucial role of the JA signaling pathway in tomato plant resistance to aphids and the importance of glandular trichomes to enhance plant defences against pests.","PeriodicalId":16830,"journal":{"name":"Journal of Plant Interactions","volume":"45 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135981884","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Rhizobium etli is able to emit nitrous oxide by connecting assimilatory nitrate reduction with nitrite respiration in the bacteroids of common bean nodules 普通根瘤菌通过同化硝酸盐还原与亚硝酸盐呼吸相结合,能够释放一氧化二氮
IF 3.2 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-09-04 DOI: 10.1080/17429145.2023.2251511
A. Hidalgo-García, G. Tortosa, Pedro J. Pacheco, Andrew J. Gates, David J. Richardson, E. Bedmar, Lourdes Girard, M. J. Torres, María J. Delgado
Legumes can contribute to emissions of the potent greenhouse gas nitrous oxide (N 2 O) directly by some rhizobia species that are able to denitrify under free-living conditions and in symbiotic association with the plant. In this study, the capacity of Phaseolus vulgaris - Rhizobium etli symbiosis to emit N 2 O in response to nitrate (NO 3) has been demonstrated for the fi rst time. We found that bacteroidal assimilatory nitrate reductase (NarB) as well as nitrite reductase (NirK) and nitric oxide reductase (cNor) denitrifying enzymes contribute to nitric oxide (NO) and N 2 O formation in nodules. We also show that R. etli NarK is involved in NO 2-extrusion and links NO 3-reduction by NarB in the cytoplasm with NirK and cNor denitri fi cation activities in the periplasm. The knowledge generated in this work will be instrumental for exploring strategies and sustainable practices in agricultural soil management to increase legume crop yield and mitigate greenhouse gas emissions
豆类可直接导致一些根瘤菌物种排放强效温室气体一氧化二氮(N2O),这些根瘤菌能够在自由生活条件下脱氮,并与植物共生。在这项研究中,首次证明了菜豆-根瘤菌共生体对硝酸盐(NO3)的反应释放N2 O的能力。我们发现,类杆菌同化硝酸还原酶(NarB)、亚硝酸盐还原酶(NirK)和一氧化氮还原酶(cNor)反硝化酶有助于根瘤中一氧化氮(NO)和N2O的形成。我们还表明,R.etli NarK参与了NO2的分泌,并将细胞质中NarB对NO3-的还原与周质中的NirK和cNor反硝化活性联系起来。这项工作中产生的知识将有助于探索农业土壤管理的战略和可持续做法,以提高豆类作物产量并减少温室气体排放
{"title":"Rhizobium etli is able to emit nitrous oxide by connecting assimilatory nitrate reduction with nitrite respiration in the bacteroids of common bean nodules","authors":"A. Hidalgo-García, G. Tortosa, Pedro J. Pacheco, Andrew J. Gates, David J. Richardson, E. Bedmar, Lourdes Girard, M. J. Torres, María J. Delgado","doi":"10.1080/17429145.2023.2251511","DOIUrl":"https://doi.org/10.1080/17429145.2023.2251511","url":null,"abstract":"Legumes can contribute to emissions of the potent greenhouse gas nitrous oxide (N 2 O) directly by some rhizobia species that are able to denitrify under free-living conditions and in symbiotic association with the plant. In this study, the capacity of Phaseolus vulgaris - Rhizobium etli symbiosis to emit N 2 O in response to nitrate (NO 3) has been demonstrated for the fi rst time. We found that bacteroidal assimilatory nitrate reductase (NarB) as well as nitrite reductase (NirK) and nitric oxide reductase (cNor) denitrifying enzymes contribute to nitric oxide (NO) and N 2 O formation in nodules. We also show that R. etli NarK is involved in NO 2-extrusion and links NO 3-reduction by NarB in the cytoplasm with NirK and cNor denitri fi cation activities in the periplasm. The knowledge generated in this work will be instrumental for exploring strategies and sustainable practices in agricultural soil management to increase legume crop yield and mitigate greenhouse gas emissions","PeriodicalId":16830,"journal":{"name":"Journal of Plant Interactions","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2023-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45715663","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bridging the gap: parallel profiling of ribosome associated and total RNA species can identify transcriptional regulatory mechanisms of plants in spaceflight 弥合差距:核糖体相关和总RNA物种的平行分析可以识别太空飞行中植物的转录调节机制
3区 生物学 Q2 PLANT SCIENCES Pub Date : 2023-08-28 DOI: 10.1080/17429145.2023.2248173
Eric S. Land, Emma Canaday, Alexander Meyers, Sarah Wyatt, Imara Y. Perera
As plants are an essential component of sustainable life support systems, long-duration space missions will require a sophisticated understanding of plant adaptations to spaceflight and microgravity. For many years, transcriptional profiling of steady state mRNA abundances has been used as measure of plant adaptations to the space environment. However, measured changes in transcript abundances are often not reflected in corresponding changes in the proteome due regulatory processes governing translation. Translating ribosome affinity purification (TRAP) is a technique which selectively targets ribosome bound mRNAs for isolation and downstream sequencing. Comparing profiles of ribosome associated mRNAs with total mRNAs provides insight into the translatome and may more accurately inform on the cellular responses to the spaceflight environment. Toward that goal, this work describes a methodology developed ahead of the APEx-07 flight mission.
由于植物是可持续生命支持系统的重要组成部分,长时间的太空任务将需要对植物对太空飞行和微重力的适应有深入的了解。多年来,稳定状态mRNA丰度的转录谱分析已被用来衡量植物对空间环境的适应性。然而,转录物丰度的测量变化往往没有反映在相应的蛋白质组的变化中,这是由于控制翻译的调节过程。翻译核糖体亲和纯化(TRAP)是一种选择性地针对核糖体结合mrna进行分离和下游测序的技术。将核糖体相关mrna与总mrna的谱图进行比较,可以深入了解翻译体,并可能更准确地了解细胞对航天环境的反应。为了实现这一目标,这项工作描述了在APEx-07飞行任务之前开发的一种方法。
{"title":"Bridging the gap: parallel profiling of ribosome associated and total RNA species can identify transcriptional regulatory mechanisms of plants in spaceflight","authors":"Eric S. Land, Emma Canaday, Alexander Meyers, Sarah Wyatt, Imara Y. Perera","doi":"10.1080/17429145.2023.2248173","DOIUrl":"https://doi.org/10.1080/17429145.2023.2248173","url":null,"abstract":"As plants are an essential component of sustainable life support systems, long-duration space missions will require a sophisticated understanding of plant adaptations to spaceflight and microgravity. For many years, transcriptional profiling of steady state mRNA abundances has been used as measure of plant adaptations to the space environment. However, measured changes in transcript abundances are often not reflected in corresponding changes in the proteome due regulatory processes governing translation. Translating ribosome affinity purification (TRAP) is a technique which selectively targets ribosome bound mRNAs for isolation and downstream sequencing. Comparing profiles of ribosome associated mRNAs with total mRNAs provides insight into the translatome and may more accurately inform on the cellular responses to the spaceflight environment. Toward that goal, this work describes a methodology developed ahead of the APEx-07 flight mission.","PeriodicalId":16830,"journal":{"name":"Journal of Plant Interactions","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135032992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of Plant Interactions
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