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Lycopene induces antiproliferative effects through apoptosis, autophagy, and oxidative DNA damage in the HeLa cells. 番茄红素通过细胞凋亡、自噬和氧化 DNA 损伤诱导 HeLa 细胞产生抗增殖作用。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-01 Epub Date: 2024-11-06 DOI: 10.1080/10799893.2024.2426516
Mesut Parlak, Ziad Joha, Fatih Yulak, Ali Sefa Mendil, Yaşar Taştemur

Background: This study explores the role of apoptosis, autophagy, and oxidative DNA damage in influencing the cytotoxic impact of lycopene on HeLa cells.

Material and methods: Cell viability following exposure to varying lycopene concentrations was determined using an XTT assay. ELISA measured key cell death proteins (Bax, BCL-2, etc.), while immunofluorescence staining visualized LC3β (autophagy) and 8-oxo-dG (DNA damage).

Results: Lycopene significantly killed HeLa cells in a dose-dependent way (IC50 = 10 μM). Subsequent examinations conducted with the IC50 dose of lycopene demonstrated a notable elevation in the expression levels of apoptotic proteins, such as cleaved caspase 3, cleaved PARP, and Bax (p < 0.001). Additionally, treatment with this substance led to an increase in the levels of 8-oxo-dG (p < 0.001), a widely acknowledged biomarker indicative of oxidative DNA damage. Furthermore, a significant rise (p < 0.05) in LC3β protein levels, a well-established indicator of autophagy activation, was noted.

Conclusion: This study suggests lycopene's potential to fight cervical cancer by triggering programmed cell death (apoptosis) and cellular self-digestion (autophagy). These findings highlight lycopene as a promising candidate for future cervical cancer treatments.

背景:本研究探讨了细胞凋亡、自噬和氧化 DNA 损伤在影响番茄红素对 HeLa 细胞的细胞毒性影响中的作用:使用 XTT 试验测定暴露于不同浓度番茄红素后的细胞活力。ELISA检测关键细胞死亡蛋白(Bax、BCL-2等),免疫荧光染色检测LC3β(自噬)和8-oxo-dG(DNA损伤):结果:番茄红素能以剂量依赖的方式(IC50 = 10 μM)明显杀死 HeLa 细胞。使用 IC50 剂量番茄红素进行的后续检测表明,凋亡蛋白(如裂解的 caspase 3、裂解的 PARP 和 Bax)的表达水平明显升高(p p p 结论):这项研究表明,番茄红素具有通过触发细胞程序性死亡(凋亡)和细胞自我消化(自噬)来对抗宫颈癌的潜力。这些发现凸显了番茄红素是未来治疗宫颈癌的一种有前途的候选物质。
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引用次数: 0
4-octyl itaconate inhibits high glucose induced renal tubular epithelial cell fibrosis through TGF-β-ROS pathway 伊它康酸 4-辛酯通过 TGF-β-ROS 通路抑制高血糖诱导的肾小管上皮细胞纤维化
IF 2.8 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-25 DOI: 10.1080/10799893.2024.2341678
Xiaoli Zou, Maoyan Wu, Mengqin Tu, Xiaozhen Tan, Yang Long, Yong Xu, Mingxiu Li
Diabetic kidney disease (DKD) is one of the most serious complications of diabetes and has become the leading cause of end-stage kidney disease, causing serious health damage and a huge economic bu...
糖尿病肾病(DKD)是糖尿病最严重的并发症之一,已成为终末期肾病的主要病因,造成严重的健康损害和巨大的经济损失。
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引用次数: 0
Intracerebroventricular injection of kisspeptin in male rats activates hypothalamo-pituitary-gonadal axis, but not hypothalamo-pituitary-adrenal axis 雄性大鼠脑室内注射吻肽能激活下丘脑-垂体-性腺轴,但不能激活下丘脑-垂体-肾上腺轴
IF 2.8 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-22 DOI: 10.1080/10799893.2024.2333470
Zafer Sahin, Osman Aktas, Omer Faruk Kalkan, Gokhan Cuce, Ahmet Alver, Elif Sahin, Seniz Erdem, Neslihan Saglam, Zulfikare Isik Solak Gormus, Selim Kutlu
Kisspeptin is an important hormone involved in the stimulation of the hypothalamo-pituitary gonadal (HPG) axis. The HPG axis can be suppressed in certain conditions such as stress, which gives rise...
Kisspeptin 是一种参与刺激下丘脑-垂体性腺轴(HPG)的重要激素。HPG轴在某些情况下会受到抑制,如压力,从而导致...
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引用次数: 0
Low pH modulates lipopolysaccharide-induced tumor necrosis factor-alpha expression and macropinocytotic activity in RAW264.7 cells. 低pH值可调节脂多糖诱导的RAW264.7细胞中肿瘤坏死因子-α的表达和巨细胞吞噬活性。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-08-22 DOI: 10.1080/10799893.2024.2395310
Miku Otsugu, Ayumi Mine, Izumi Uchida, Yuta Miyake, Ryo Tachihara, Kurumi Fujiwara, Ayako Ichimura, Koichi Sato, Hideaki Tomura

Inflammation triggers various types of diseases that need to be addressed. Macrophages play important roles in the inflammatory responses. As atherosclerosis progresses, macrophages transform into foam cells. Extracellular acidification is observed at and around bacterial infection and atherosclerotic sites. However, the effects of acidification on the inflammatory response of macrophages and the progression of atherosclerosis have not been fully understood. This study investigates the impact of extracellular acidification on lipopolysaccharide-induced tumor necrosis factor-alpha (TNF-α) expression and macropinocytotic activity in RAW264.7 cells. TNF-α expression is measured by real-time polymerase chain reaction (relative value to glyceraldehyde-3-phosphate dehydrogenase expression). Macropinocytotic activity is measured by neutral red uptake (absorbance at 540 nm). Results show that TNF-α expression increased with decreasing extracellular pH in both un-foamed and foamed cells. Macropinocytotic activity was upregulated at pH 6.8 in un-foamed cells, but downregulated in foamed cells stimulated at low pH. Proton-sensing G protein-coupled receptors (GPCRs) were involved in the expression of TNF-α and in the macropinocytotic activity of foamed cells. In conclusion, this study reveals that extracellular acidification differently affect various inflammatory responses such as LPS-induced TNF-α expression and macropinocytotic activity of RAW264.7 cells and different proton-sensing GPCRs are involved in the different inflammatory responses.

炎症会引发各种类型的疾病,亟待解决。巨噬细胞在炎症反应中发挥着重要作用。随着动脉粥样硬化的发展,巨噬细胞会转化为泡沫细胞。在细菌感染和动脉粥样硬化部位及其周围可观察到细胞外酸化。然而,酸化对巨噬细胞炎症反应和动脉粥样硬化进展的影响尚未完全明了。本研究探讨了细胞外酸化对 RAW264.7 细胞中脂多糖诱导的肿瘤坏死因子-α(TNF-α)表达和大吞噬细胞活性的影响。TNF-α 的表达量通过实时聚合酶链反应测定(与甘油醛-3-磷酸脱氢酶表达量的相对值)。大细胞活性通过中性红吸收(540 纳米吸光度)进行测量。结果显示,在未发泡细胞和发泡细胞中,TNF-α的表达量随细胞外pH值的降低而增加。在 pH 值为 6.8 时,未发泡细胞的大蛋白细胞活性上调,但在低 pH 值刺激下,发泡细胞的大蛋白细胞活性下调。质子传感 G 蛋白偶联受体(GPCR)参与了 TNF-α 的表达和发泡细胞的大蛋白细胞活性。总之,本研究揭示了细胞外酸化对各种炎症反应的不同影响,如 LPS 诱导的 TNF-α 表达和 RAW264.7 细胞的大蛋白细胞活性,而不同的质子感应 GPCRs 参与了不同的炎症反应。
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引用次数: 0
Heat shock protein (Hsp27)-ceramide synthase (Cers1) protein-protein interactions provide a new avenue for unexplored anti-cancer mechanism and therapy. 热休克蛋白(Hsp27)-甘油酰胺合成酶(Cers1)蛋白之间的相互作用为尚未探索的抗癌机制和疗法提供了一条新途径。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-08-27 DOI: 10.1080/10799893.2024.2392711
Musab Ali, Zhichao Zhang, Mahmoud A A Ibrahim, Mahmoud E S Soliman

Hsp27 is a member of the small heat-shock proteins (sHSPs) - the known cellular line of defence against abnormal protein folding behaviors. Nevertheless, its upregulation is linked to a variety of pathological disorders, including several types of cancers. The ceramide synthases (CerS) mediate the synthesis of ceramide, a critical structural and signaling lipid. Functionally, downstream ceramide metabolites are implicated in the apoptosis process and their abnormal functionality has been linked to anticancer resistance. Studies showed that CerS1 are possibly inhibited by Hsp27 leading to biochemical anticancer effects in vitro. Nevertheless, the nature of such protein-protein interaction (PPI) has not been considerably investigated in molecular terms, hence, we present the first description of the dynamics CerS1-Hsp27 interaction landscapes using molecular dynamics simulations. Time-scale molecular dynamics simulation analysis indicated a system-wide conformational events of decreased stability, increased flexibility, reduced compactness, and decreased folding of CerS1. Analysis of binding energy showed a favorable interaction entailing 56 residues at the interface and a total stabilizing energy of -158 KJ/mol. The CerS1 catalytic domain experienced an opposite trend compared to the protein backbone. Yet, these residues adopted a highly compact conformation as per DCCM and DSSP analysis. Furthermore, conserved residues (SER 212, ASP 213, ALA 240, GLY 243, ASP 319) comprising the substrate shuttling machinery showed notable rigidity implying a restrained ceramide precursor access and assembly; hence, a possible inhibitory mechanism. Findings from this report would streamline a better molecular understanding of CerS1-Hsp27 interactions and decipher its potential avenue toward unexplored anti-cancer mechanisms and therapy.

Hsp27 是小热休克蛋白(sHSPs)的一种,是已知的防止蛋白质折叠行为异常的细胞防线。然而,它的上调与包括几种癌症在内的多种病理紊乱有关。神经酰胺合成酶(CerS)介导神经酰胺的合成,神经酰胺是一种重要的结构脂质和信号脂质。从功能上讲,下游神经酰胺代谢产物与细胞凋亡过程有关,其功能异常与抗癌耐药性有关。研究表明,CerS1 可能会受到 Hsp27 的抑制,从而导致体外生化抗癌效应。因此,我们首次利用分子动力学模拟描述了 CerS1-Hsp27 的相互作用动态景观。时间尺度的分子动力学模拟分析表明,整个系统的构象事件包括 CerS1 的稳定性降低、灵活性增加、紧凑性降低和折叠性降低。结合能分析表明,界面上的 56 个残基产生了有利的相互作用,总稳定能为 -158 KJ/mol。与蛋白质骨架相比,CerS1 催化结构域出现了相反的趋势。然而,根据 DCCM 和 DSSP 分析,这些残基采用了高度紧凑的构象。此外,组成底物穿梭机制的保守残基(SER 212、ASP 213、ALA 240、GLY 243、ASP 319)显示出明显的刚性,这意味着神经酰胺前体的获取和组装受到限制;因此,这可能是一种抑制机制。本报告的研究结果将有助于更好地从分子角度理解 CerS1-Hsp27 的相互作用,并破译其潜在的抗癌机制和疗法。
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引用次数: 0
The vasodilator effect of Eugenol on uterine artery - potential therapeutic applications in pregnancy-associated hypertension. 丁香酚对子宫动脉的血管扩张作用--在妊娠相关性高血压中的潜在治疗应用。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-01 Epub Date: 2024-08-26 DOI: 10.1080/10799893.2024.2395301
Harithalakshmi Jandhyam, Bimal Prasanna Mohanty, Subas Chandra Parija

Preeclampsia, a gestational associated hypertension, has been reported in 6-8% of pregnant women worldwide leading to premature delivery and low birth weight of newborn due to reduced blood flow to placenta. Although several vasodilators (Methyl dopa, hydralazine, β-blockers and diuretics) are currently in use to treat preeclampsia, still there is a search for safer drugs with better efficacy. Lately, antihypertensive vasodilators from natural sources are gaining importance in treating preeclampsia. Eugenol (Eug), a natural essential oil, has been traditionally used in health and food products without any risk. In the present study, ex vivo experiments were designed to examine the vasorelaxation effect of Eug and its signaling pathways in a middle uterine artery (MUA) of pregnant Capra hircus (Ch). In presence of different blockers (L-NAME, indomethacin, ODQ, Ouabain, glibenclamide, 4-AP, Ba2, Carbenoxolone and 18β Glycyrrhetinic acid), Eug-induced concentration-dependent vasorelaxation response was elicited. The results showed that Eug caused a greater vasorelaxation effect in the MU of pregnant animals, which is mediated by potential activation of eNOS, KATP channels, and Kir channels with moderate activation of Na+- K+- ATPase and sGC and MEGJ. These findings provide a strong basis for developing Eug as a therapeutic candidate in the treatment of pregnancy-associated hypertension.

据报道,全世界有 6-8% 的孕妇患有子痫前期(一种妊娠高血压),由于胎盘血流量减少,导致早产和新生儿体重不足。尽管目前有几种血管扩张剂(甲基多巴、肼屈嗪、β-受体阻滞剂和利尿剂)可用于治疗子痫前期,但人们仍在寻找更安全、疗效更好的药物。最近,来自天然来源的降压血管扩张剂在治疗子痫前期方面的作用越来越重要。丁香酚(Eug)是一种天然精油,历来被用于保健品和食品中,没有任何风险。本研究设计了体内外实验,以检测丁香酚及其信号通路对妊娠貘(Capra hircus,Ch)子宫中动脉(MUA)的血管舒张作用。在不同阻滞剂(L-NAME、吲哚美辛、ODQ、欧阿巴因、格列本脲、4-AP、Ba2、卡贝诺酮和18β甘草次酸)的作用下,Eug诱导了浓度依赖性血管舒张反应。结果表明,Eug对妊娠动物中枢神经系统的血管舒张作用更强,这种作用是由eNOS、KATP通道和Kir通道的潜在激活以及Na+- K+- ATP酶、sGC和MEGJ的适度激活介导的。这些发现为开发 Eug 作为治疗妊娠相关高血压的候选药物提供了坚实的基础。
{"title":"The vasodilator effect of Eugenol on uterine artery - potential therapeutic applications in pregnancy-associated hypertension.","authors":"Harithalakshmi Jandhyam, Bimal Prasanna Mohanty, Subas Chandra Parija","doi":"10.1080/10799893.2024.2395301","DOIUrl":"10.1080/10799893.2024.2395301","url":null,"abstract":"<p><p>Preeclampsia, a gestational associated hypertension, has been reported in 6-8% of pregnant women worldwide leading to premature delivery and low birth weight of newborn due to reduced blood flow to placenta. Although several vasodilators (Methyl dopa, hydralazine, β-blockers and diuretics) are currently in use to treat preeclampsia, still there is a search for safer drugs with better efficacy. Lately, antihypertensive vasodilators from natural sources are gaining importance in treating preeclampsia. Eugenol (Eug), a natural essential oil, has been traditionally used in health and food products without any risk. In the present study, <i>ex vivo</i> experiments were designed to examine the vasorelaxation effect of Eug and its signaling pathways in a middle uterine artery (MUA) of pregnant <i>Capra hircus</i> (<i>Ch</i>). In presence of different blockers (L-NAME, indomethacin, ODQ, Ouabain, glibenclamide, 4-AP, Ba<sup>2</sup>, Carbenoxolone and 18β Glycyrrhetinic acid), Eug-induced concentration-dependent vasorelaxation response was elicited. The results showed that Eug caused a greater vasorelaxation effect in the MU of pregnant animals, which is mediated by potential activation of eNOS, K<sub>ATP</sub> channels, and K<sub>ir</sub> channels with moderate activation of Na<sup>+</sup>- K<sup>+</sup>- ATPase and sGC and MEGJ. These findings provide a strong basis for developing Eug as a therapeutic candidate in the treatment of pregnancy-associated hypertension.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"54-62"},"PeriodicalIF":2.6,"publicationDate":"2024-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142055849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The roles of angiotensin-converting enzyme 2 inhibitor, melatonin and its agonist on angiotensin II reactivity in intact and denuded rat aortic rings. 血管紧张素转换酶 2 抑制剂、褪黑激素及其激动剂对完整和变性大鼠主动脉环中血管紧张素 II 反应性的作用
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-02-01 Epub Date: 2024-04-26 DOI: 10.1080/10799893.2024.2345907
Nazar M Shareef Mahmood, Almas Mr Mahmud, Ismail M Maulood

Background: The pineal product melatonin (MEL) modulates blood vessels through G protein-coupled receptors (GPCRs) called melatonin type 1 receptor (MT1R) and melatonin type 2 receptor (MT2R), in that order. The renin-angiotensin system (RAS), which breaks down angiotensin II (Ang II) to create Ang 1-7, is thought to be mostly controlled by angiotensin-converting enzyme-2 (ACE2).

Aim: The current work examines the involvement of ACE2 inhibitor, MEL, and ramelteon (RAM) in the vascular response to Ang II activities in the endothelial denuded (E-) and intact (E+) rat isolated thoracic aortic rings.

Method: The isometric tension was measured to evaluate the vascular Ang II contractility using dose response curve (DRC).

Results: MEL and RAM caused a rightward shift of Ang II in endothelium E + and endothelium E- aorta.

Conclusion: According to the current study, the distribution of MEL receptors and the endothelium's condition are related to the vasomodulatory effect of MEL and ACE2 on Ang II attenuation. These physiological interactions can control vascular tone and increase Ang II reactivity denude endothelial layaer.

背景:松果体产物褪黑激素(MEL)依次通过称为褪黑激素1型受体(MT1R)和褪黑激素2型受体(MT2R)的G蛋白偶联受体(GPCR)调节血管。目的:本研究探讨了血管紧张素转换酶 2 抑制剂 MEL 和雷美替胺 (RAM) 参与内皮剥脱(E-)和完整(E+)大鼠离体胸主动脉环血管对 Ang II 活动的反应:方法:测量等长张力,利用剂量反应曲线(DRC)评估血管 Ang II 收缩能力:结果:MEL和RAM导致E+内皮细胞和E-内皮细胞主动脉中的Ang II右移:结论:根据目前的研究,MEL 受体的分布和内皮的状况与 MEL 和 ACE2 对 Ang II 的血管调节衰减作用有关。这些生理相互作用可控制血管张力,提高血管内皮层对 Ang II 的反应性。
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引用次数: 0
cGAS-STING and PD1/PDL-1 pathway in breast cancer: a window to new therapies. 乳腺癌中的 cGAS-STING 和 PD1/PDL-1 通路:通向新疗法的窗口。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-02-01 Epub Date: 2024-03-12 DOI: 10.1080/10799893.2024.2325353
Milad Khorasani, Maryam Alaei

Breast cancer is a complex malignancy with diverse molecular and cellular subtypes and clinical outcomes. Despite advances in treatment, breast cancer remains a significant health challenge. However, recent advances in cancer immunotherapy have shown promising results in the treatment of breast cancer, particularly the use of inhibitors that target the immune checkpoint PD1/PDL1. Also, the cGAS-STING pathway, an important part of the innate immune response, has been considered as a major potential therapeutic target for breast cancer. In this narrative review, we provide an overview of the cGAS-STING and PD1/PDL-1 pathway in breast cancer, including their role in tumor development, progression, and response to treatment. We also discuss potential future directions for research.

乳腺癌是一种复杂的恶性肿瘤,其分子和细胞亚型以及临床结果各不相同。尽管治疗手段不断进步,但乳腺癌仍然是一项重大的健康挑战。然而,癌症免疫疗法的最新进展显示,乳腺癌的治疗效果令人鼓舞,尤其是针对免疫检查点 PD1/PDL1 的抑制剂的使用。此外,作为先天性免疫反应的重要组成部分,cGAS-STING 通路也被认为是乳腺癌的主要潜在治疗靶点。在这篇叙述性综述中,我们概述了乳腺癌中的 cGAS-STING 和 PD1/PDL-1 通路,包括它们在肿瘤发生、发展和治疗反应中的作用。我们还讨论了未来潜在的研究方向。
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引用次数: 0
Mechanistic insights into sodium ion-mediated ligand binding affinity and modulation of 5-HT2B GPCR activity: implications for drug discovery and development. 钠离子介导的配体结合亲和力和 5-HT2B GPCR 活性调节的机理研究:对药物发现和开发的启示。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-02-01 Epub Date: 2024-03-26 DOI: 10.1080/10799893.2024.2332886
Arushi Chauhan, Jitender Singh, Namrata Sangwan, Pramod K Avti

Purpose: The G-protein coupled receptor (GPCR) family, implicated in neurological disorders and drug targets, includes the sensitive serotonin receptor subtype, 5-HT2B. The influence of sodium ions on ligand binding at the receptor's allosteric region is being increasingly studied for its impact on receptor structure.

Methods: High-throughput virtual screening of three libraries, specifically the Asinex-GPCR library, which contains 8,532 compounds and FDA-approved (2466 compounds) and investigational compounds (2731)) against the modeled receptor [4IB4-5HT2BRM] using the standard agonist/antagonist (Ergotamine/Methysergide), as previously selected from our studies based on ADMET profiling, and further on basis of binding free energy a single compound - dihydroergotamine is chosen.

Results: This compound displayed strong interactions with the conserved active site. Ions influence ligand binding, with stronger interactions (3-H-bonds and 1-π-bond around 3.35 Å) observed when an agonist and ions are present. Ions entry is guided by conserved motifs in helices III, IV, and VII, which regulate the receptor. Dihydroergotamine, the selected drug, showed binding variance based on ions presence/absence, affecting amino acid residues in these motifs. DCCM and PCA confirmed the stabilization of ligands, with a greater correlation (∼46.6%-PC1) observed with ions. Dihydroergotamine-modified interaction sites within the receptor necessary for activation, serving as a potential 5HT2BRM agonist. RDF analysis showed the sodium ions density around the active site during dihydroergotamine binding.

Conclusion: Our study provides insights into sodium ion mobility's role in controlling ligand binding affinity in 5HT2BR, offering therapeutic development insights.

目的:G-蛋白偶联受体(GPCR)家族与神经系统疾病和药物靶点有关,其中包括敏感的血清素受体亚型 5-HT2B。钠离子对受体异构区配体结合的影响正越来越多地被研究,以了解其对受体结构的影响。方法:针对模型受体[4IB4-5HT2BRM],使用标准激动剂/拮抗剂(麦角胺/美塞格列)对三个化合物库进行高通量虚拟筛选,特别是Asinex-GPCR化合物库,其中包含8532种化合物,以及FDA批准的化合物(2466种)和研究化合物(2731种):结果:该化合物与保守的活性位点有很强的相互作用。离子会影响配体的结合,当存在激动剂和离子时,会观察到更强的相互作用(3-H 键和 1-π 键,约 3.35 Å)。离子的进入由螺旋 III、IV 和 VII 中的保守基团引导,这些基团可调节受体。所选药物二氢麦角胺根据离子的存在/不存在显示出结合差异,影响了这些基团中的氨基酸残基。DCCM 和 PCA 证实了配体的稳定性,观察到配体与离子的相关性更大(∼46.6%-PC1)。二氢麦角胺修饰了激活受体所需的相互作用位点,可作为潜在的 5HT2BRM 激动剂。RDF 分析表明,在二氢麦角胺结合过程中,活性位点周围的钠离子密度较大:我们的研究深入揭示了钠离子迁移在控制 5HT2BR 中配体结合亲和力中的作用,为治疗开发提供了启示。
{"title":"Mechanistic insights into sodium ion-mediated ligand binding affinity and modulation of 5-HT2B GPCR activity: implications for drug discovery and development.","authors":"Arushi Chauhan, Jitender Singh, Namrata Sangwan, Pramod K Avti","doi":"10.1080/10799893.2024.2332886","DOIUrl":"10.1080/10799893.2024.2332886","url":null,"abstract":"<p><strong>Purpose: </strong>The G-protein coupled receptor (GPCR) family, implicated in neurological disorders and drug targets, includes the sensitive serotonin receptor subtype, 5-HT2B. The influence of sodium ions on ligand binding at the receptor's allosteric region is being increasingly studied for its impact on receptor structure.</p><p><strong>Methods: </strong>High-throughput virtual screening of three libraries, specifically the Asinex-GPCR library, which contains 8,532 compounds and FDA-approved (2466 compounds) and investigational compounds (2731)) against the modeled receptor [4IB4-5HT<sub>2B</sub>R<sub>M</sub>] using the standard agonist/antagonist (Ergotamine/Methysergide), as previously selected from our studies based on ADMET profiling, and further on basis of binding free energy a single compound - dihydroergotamine is chosen.</p><p><strong>Results: </strong>This compound displayed strong interactions with the conserved active site. Ions influence ligand binding, with stronger interactions (3-H-bonds and 1-π-bond around 3.35 Å) observed when an agonist and ions are present. Ions entry is guided by conserved motifs in helices III, IV, and VII, which regulate the receptor. Dihydroergotamine, the selected drug, showed binding variance based on ions presence/absence, affecting amino acid residues in these motifs. DCCM and PCA confirmed the stabilization of ligands, with a greater correlation (∼46.6%-PC1) observed with ions. Dihydroergotamine-modified interaction sites within the receptor necessary for activation, serving as a potential 5HT<sub>2B</sub>R<sub>M</sub> agonist. RDF analysis showed the sodium ions density around the active site during dihydroergotamine binding.</p><p><strong>Conclusion: </strong>Our study provides insights into sodium ion mobility's role in controlling ligand binding affinity in 5HT<sub>2B</sub>R, offering therapeutic development insights.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"8-18"},"PeriodicalIF":2.6,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140288408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The route of autophagy regulation by osteopontin: a review on the linking mechanisms 补骨脂素调控自噬的途径:关联机制综述
IF 2.8 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-12-11 DOI: 10.1080/10799893.2023.2291563
Zohreh Abdolvahabi, Samira Ezzati-Mobaser, Zahra Hesari
Autophagy is a dynamic intracellular process of protein degradation, which is mostly triggered by nutrient deprivation. This process initiates with the formation of autophagosomes, which they captu...
自噬是一种动态的细胞内蛋白质降解过程,主要由营养剥夺引起。这一过程始于自噬体的形成,它们捕获自噬体。
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引用次数: 0
期刊
Journal of Receptors and Signal Transduction
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