首页 > 最新文献

Journal of Receptors and Signal Transduction最新文献

英文 中文
The combined use of thymoquinone and metformin provides more effective neuroprotection in a mouse model of MPTP-induced Parkinson's disease. 在 MPTP 诱导的帕金森病小鼠模型中,联合使用胸腺醌和二甲双胍可提供更有效的神经保护。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-11-25 DOI: 10.1080/10799893.2024.2434112
Oguzhan Kavrik, Nurhan Gumral, Ozlem Ozmen, Rahime Aslankoc, Mustafa Saygin, Arzu Yalcin

Thymoquinone (TQ) is known for its antioxidant properties, and although metformin (MM) is known as an antidiabetic drug, it is suggested that it reduces neurodegeneration. The study aimed to investigate the neuroprotective effects of TQ and MM, particularly when used together, in relation to Parkinson's disease (PD). In the study, sixty-eight male C57BL/6 mice weighing 25-30 g were divided into five groups as follows: control, MPTP, MPTP+TQ, MPTP+MM, and MPTP+TQ+MM. MM (500 mg/kg, orally) and TQ (5 mg/kg, i.p.) were administered for 21 days. Motor coordination and locomotor activities were evaluated by the pole test. TOS and TAS analyses were conducted to determine oxidative stress levels in the substantia nigra. Dopaminergic degeneration in the substantia nigra was evaluated by analyzing Tyrosine hydroxylase (TH). To evaluate the apoptotic pathway, the expression levels of iNOS, BDNF, Complex 1, Bax, Bcl-2, Cytochrome C, AIF, and Caspase-3 were examined immunohistochemically. Compared to the MPTP-treated group, TQ, MM and MM+TQ treatment provided significant improvement in locomotor activity in mice, significantly increased antioxidant activity, significantly reduced the expression levels of iNOS, Bax, Cytochrome C, Caspase-3, and AIF, significantly increased BDNF, Bcl-2, and Complex 1 expressions, and significantly increased the number of TH positive cells. The separate use of TQ and MM exhibits neuroprotective activity, however, we showed that using TQ and MM in combination may be more effective. This may provide preclinical evidence supporting the therapeutic potential of their combined use for treating PD.

胸腺醌(TQ)以其抗氧化特性而闻名,而二甲双胍(MM)虽然是一种抗糖尿病药物,但也被认为能减少神经变性。这项研究旨在调查 TQ 和 MM 对帕金森病(PD)的神经保护作用,尤其是同时使用时的作用。在研究中,68只体重25-30克的雄性C57BL/6小鼠被分为以下五组:对照组、MPTP组、MPTP+TQ组、MPTP+MM组和MPTP+TQ+MM组。MM(500 毫克/千克,口服)和 TQ(5 毫克/千克,静注)给药 21 天。通过极点试验评估运动协调性和运动活动。进行TOS和TAS分析以确定黑质的氧化应激水平。通过分析酪氨酸羟化酶(TH)来评估黑质中的多巴胺能退化。为了评估凋亡途径,免疫组化法检测了iNOS、BDNF、Complex 1、Bax、Bcl-2、细胞色素C、AIF和Caspase-3的表达水平。与 MPTP 处理组相比,TQ、MM 和 MM+TQ 处理可显著改善小鼠的运动活性,显著提高抗氧化活性,显著降低 iNOS、Bax、细胞色素 C、Caspase-3 和 AIF 的表达水平,显著提高 BDNF、Bcl-2 和 Complex 1 的表达,并显著增加 TH 阳性细胞的数量。单独使用 TQ 和 MM 具有神经保护活性,但我们的研究表明,联合使用 TQ 和 MM 可能更有效。这为联合使用这两种药物治疗帕金森病提供了临床前证据。
{"title":"The combined use of thymoquinone and metformin provides more effective neuroprotection in a mouse model of MPTP-induced Parkinson's disease.","authors":"Oguzhan Kavrik, Nurhan Gumral, Ozlem Ozmen, Rahime Aslankoc, Mustafa Saygin, Arzu Yalcin","doi":"10.1080/10799893.2024.2434112","DOIUrl":"10.1080/10799893.2024.2434112","url":null,"abstract":"<p><p>Thymoquinone (TQ) is known for its antioxidant properties, and although metformin (MM) is known as an antidiabetic drug, it is suggested that it reduces neurodegeneration. The study aimed to investigate the neuroprotective effects of TQ and MM, particularly when used together, in relation to Parkinson's disease (PD). In the study, sixty-eight male C57BL/6 mice weighing 25-30 g were divided into five groups as follows: control, MPTP, MPTP+TQ, MPTP+MM, and MPTP+TQ+MM. MM (500 mg/kg, orally) and TQ (5 mg/kg, i.p.) were administered for 21 days. Motor coordination and locomotor activities were evaluated by the pole test. TOS and TAS analyses were conducted to determine oxidative stress levels in the substantia nigra. Dopaminergic degeneration in the substantia nigra was evaluated by analyzing Tyrosine hydroxylase (TH). To evaluate the apoptotic pathway, the expression levels of iNOS, BDNF, Complex 1, Bax, Bcl-2, Cytochrome C, AIF, and Caspase-3 were examined immunohistochemically. Compared to the MPTP-treated group, TQ, MM and MM+TQ treatment provided significant improvement in locomotor activity in mice, significantly increased antioxidant activity, significantly reduced the expression levels of iNOS, Bax, Cytochrome C, Caspase-3, and AIF, significantly increased BDNF, Bcl-2, and Complex 1 expressions, and significantly increased the number of TH positive cells. The separate use of TQ and MM exhibits neuroprotective activity, however, we showed that using TQ and MM in combination may be more effective. This may provide preclinical evidence supporting the therapeutic potential of their combined use for treating PD.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"161-173"},"PeriodicalIF":2.6,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142716412","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of dapagliflozin on pulmonary vascular remodeling in rats with chronic hypoxic pulmonary arterial hypertension. 达格列净对慢性缺氧肺动脉高压大鼠肺血管重构的影响。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-12-14 DOI: 10.1080/10799893.2024.2433083
Yi Xu, Wenxue Liang, Juan Huo, Ting Zhang, Tianpu Feng, Man Li, Zhemin Zhu, Ping Zhou, Shasha Zhu, Yingzhi Lu, Lei Wang

Objective: To investigate the effects of sodium-glucose co-transporter 2 inhibitor dapagliflozin on pulmonary vascular remodeling in a rat model of chronic hypoxic pulmonary arterial hypertension.

Methods: Eighteen female Sprague-Dawley rats were divided into three groups: control (CON), chronic hypoxia (HYP), and chronic hypoxia + dapagliflozin. The HYP and dapagliflozin groups were subjected to hypoxia and received saline or dapagliflozin. The CON group was normoxic and received saline. Body weight and fasting blood glucose were measured, and after 21 days, lung and heart tissues were analyzed for pulmonary artery reconstruction and right ventricular hypertrophy. Western blotting assessed Bax and Bcl-2 protein levels.

Results: Chronic hypoxia increased pulmonary artery wall thickness and lung fibrosis and caused right ventricular hypertrophy. Dapagliflozin reduced these changes, decreasing artery wall thickness, fibrosis, and hypertrophy while increasing the Bax/Bcl-2 ratio.

Conclusion: Dapagliflozin alleviates chronic hypoxia-induced pulmonary artery wall thickening and lung tissue fibrosis in rats, potentially through proapoptotic effects.

目的:探讨钠-葡萄糖共转运蛋白2抑制剂达格列净对慢性缺氧肺动脉高压模型大鼠肺血管重构的影响。方法:雌性Sprague-Dawley大鼠18只,随机分为对照组(CON)、慢性缺氧组(HYP)和慢性缺氧+达格列净组。HYP组和达格列净组进行缺氧治疗,并给予生理盐水或达格列净治疗。CON组为常氧,给予生理盐水。测量体重和空腹血糖,21 d后分析肺和心脏组织是否有肺动脉重建和右心室肥厚。Western blotting检测Bax和Bcl-2蛋白水平。结果:慢性缺氧使肺动脉壁增厚,肺纤维化,右心室肥厚。达格列净降低了这些变化,降低了动脉壁厚度、纤维化和肥厚,同时增加了Bax/Bcl-2比值。结论:达格列净减轻慢性缺氧大鼠肺动脉壁增厚和肺组织纤维化,可能是通过促凋亡作用。
{"title":"Effect of dapagliflozin on pulmonary vascular remodeling in rats with chronic hypoxic pulmonary arterial hypertension.","authors":"Yi Xu, Wenxue Liang, Juan Huo, Ting Zhang, Tianpu Feng, Man Li, Zhemin Zhu, Ping Zhou, Shasha Zhu, Yingzhi Lu, Lei Wang","doi":"10.1080/10799893.2024.2433083","DOIUrl":"10.1080/10799893.2024.2433083","url":null,"abstract":"<p><strong>Objective: </strong>To investigate the effects of sodium-glucose co-transporter 2 inhibitor dapagliflozin on pulmonary vascular remodeling in a rat model of chronic hypoxic pulmonary arterial hypertension.</p><p><strong>Methods: </strong>Eighteen female Sprague-Dawley rats were divided into three groups: control (CON), chronic hypoxia (HYP), and chronic hypoxia + dapagliflozin. The HYP and dapagliflozin groups were subjected to hypoxia and received saline or dapagliflozin. The CON group was normoxic and received saline. Body weight and fasting blood glucose were measured, and after 21 days, lung and heart tissues were analyzed for pulmonary artery reconstruction and right ventricular hypertrophy. Western blotting assessed Bax and Bcl-2 protein levels.</p><p><strong>Results: </strong>Chronic hypoxia increased pulmonary artery wall thickness and lung fibrosis and caused right ventricular hypertrophy. Dapagliflozin reduced these changes, decreasing artery wall thickness, fibrosis, and hypertrophy while increasing the Bax/Bcl-2 ratio.</p><p><strong>Conclusion: </strong>Dapagliflozin alleviates chronic hypoxia-induced pulmonary artery wall thickening and lung tissue fibrosis in rats, potentially through proapoptotic effects.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"174-180"},"PeriodicalIF":2.6,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142823834","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of elastin on abnormal proliferation of pulmonary artery smooth muscle cells at an early stage of hypoxic exposure. 弹性蛋白对缺氧早期肺动脉平滑肌细胞异常增殖的影响
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-01 Epub Date: 2024-11-26 DOI: 10.1080/10799893.2024.2430489
Hao Dong, Pengshuai Li, Xuefei Wang, Yuxin Zhang, Fei Han, Shan Gao, Weicao Hu, Xuewei Hao

Elastin (Eln) is an extracellular matrix protein implicated in the proliferation of vascular smooth muscle cells. However, its potential role in hypoxic pulmonary hypertension (HPH) remains uncertain. This study is the first to demonstrate that elastin can promote the proliferation of mouse pulmonary artery smooth muscle cells (mPASMCs) and that hypoxia significantly induces Eln expression in cultured mPASMCs, thereby participating in the cell cycle. Interference with Eln expression via siRNA led to the downregulation of PCNA, Cyclin A, and Cyclin D, thus, the hypoxia-induced proliferation of mPASMCs was reversed. Furthermore, our study demonstrated that the hypoxia-induced expression of Eln and the proliferation of mPASMCs are associated with the proliferation-related phosphatidylinositol 3-kinase (PI3K)/protein kinase B (Akt) signaling pathway. In conclusion, these data suggest that Eln is a key regulatory factor in mPASMCs proliferation, potentially elucidating the mechanism underlying hypoxia-induced mPASMCs proliferation. This finding may offer valuable insights for the study of hypoxic pulmonary hypertension.

弹性蛋白(Eln)是一种细胞外基质蛋白,与血管平滑肌细胞的增殖有关。然而,它在缺氧性肺动脉高压(HPH)中的潜在作用仍不确定。本研究首次证明弹性蛋白能促进小鼠肺动脉平滑肌细胞(mPASMCs)的增殖,缺氧能显著诱导培养的 mPASMCs 中 Eln 的表达,从而参与细胞周期。通过 siRNA 干扰 Eln 的表达会导致 PCNA、细胞周期蛋白 A 和细胞周期蛋白 D 的下调,从而逆转缺氧诱导的 mPASMCs 增殖。此外,我们的研究还表明,缺氧诱导的 Eln 表达和 mPASMCs 的增殖与增殖相关的磷脂酰肌醇 3- 激酶(PI3K)/蛋白激酶 B(Akt)信号通路有关。总之,这些数据表明,Eln是mPASMCs增殖的关键调控因子,有可能阐明缺氧诱导mPASMCs增殖的机制。这一发现可能为缺氧性肺动脉高压的研究提供有价值的启示。
{"title":"Effect of elastin on abnormal proliferation of pulmonary artery smooth muscle cells at an early stage of hypoxic exposure.","authors":"Hao Dong, Pengshuai Li, Xuefei Wang, Yuxin Zhang, Fei Han, Shan Gao, Weicao Hu, Xuewei Hao","doi":"10.1080/10799893.2024.2430489","DOIUrl":"10.1080/10799893.2024.2430489","url":null,"abstract":"<p><p>Elastin (Eln) is an extracellular matrix protein implicated in the proliferation of vascular smooth muscle cells. However, its potential role in hypoxic pulmonary hypertension (HPH) remains uncertain. This study is the first to demonstrate that elastin can promote the proliferation of mouse pulmonary artery smooth muscle cells (mPASMCs) and that hypoxia significantly induces Eln expression in cultured mPASMCs, thereby participating in the cell cycle. Interference with Eln expression <i>via</i> siRNA led to the downregulation of PCNA, Cyclin A, and Cyclin D, thus, the hypoxia-induced proliferation of mPASMCs was reversed. Furthermore, our study demonstrated that the hypoxia-induced expression of Eln and the proliferation of mPASMCs are associated with the proliferation-related phosphatidylinositol 3-kinase (PI3K)/protein kinase B (Akt) signaling pathway. In conclusion, these data suggest that Eln is a key regulatory factor in mPASMCs proliferation, potentially elucidating the mechanism underlying hypoxia-induced mPASMCs proliferation. This finding may offer valuable insights for the study of hypoxic pulmonary hypertension.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"129-139"},"PeriodicalIF":2.6,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142716348","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Investigating the inhibitory potential of natural bioactive compounds against cyclin-dependent kinase 13: virtual high throughput screening and MD simulation studies to target CDK signaling. 研究天然生物活性化合物对细胞周期蛋白依赖性激酶 13 的抑制潜力:针对 CDK 信号转导的虚拟高通量筛选和 MD 模拟研究。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-01 Epub Date: 2024-11-23 DOI: 10.1080/10799893.2024.2430495
Zehra, Farah Anjum, Talha Jawaid, Romana Ishrat, Md Imtaiyaz Hassan

Cyclin-dependent kinase 13 (CDK13) belongs to the cyclin-dependent kinase (CDK) family that is actively involved in transcription regulation and RNA splicing. CDK13 binds with its partner, cyclin K, to regulate several biological processes. CDK13 and cyclin K complex phosphorylates RNA pol II carboxyl-terminal domain (CTD) at several serine residues, creating transcription elongation. The upregulation of the kinase contributes to tumor growth and cell proliferation, and is highly associated with various cancers, including skin, stomach, and ovarian. Thus, it can be considered an efficient therapeutic target for the development of drugs against cancer. In this work, a virtual high throughput screening (vHTS) of the ZINC library was carried out to elucidate the initial potent compounds. Further, filters were applied to identify the hit compounds among the ∼90,000 compound library. Based on the docking scores and binding affinity, the top 100 hits were elucidated, and they were further narrowed down to 50 compounds based on ADMET and Lipinski's RO5 filter. Finally, 10 compounds were chosen that showed appreciable biological activity. Among them, ZINC02136558 was selected as a potent lead compound that showed strong interaction with the amino acid residues of active and binding sites of CDK13. Furthermore, the all-atom molecular dynamic simulation was performed at 200 ns to explore the dynamic evolution of the system. Finally, the results showed that the ZINC02136558 may be considered as a potential lead molecule to inhibit CDK13 and implicated in therapeutic management of cancer and associated diseases.

细胞周期蛋白依赖性激酶 13(CDK13)属于细胞周期蛋白依赖性激酶(CDK)家族,它积极参与转录调控和 RNA 剪接。CDK13 与其伙伴细胞周期蛋白 K 结合,调节多个生物过程。CDK13 和细胞周期蛋白 K 复合物会使 RNA pol II 羧基末端结构域(CTD)的多个丝氨酸残基磷酸化,从而导致转录延长。激酶的上调有助于肿瘤生长和细胞增殖,与皮肤癌、胃癌和卵巢癌等多种癌症密切相关。因此,它可被视为开发抗癌药物的有效治疗靶点。在这项工作中,对 ZINC 库进行了虚拟高通量筛选(vHTS),以阐明最初的强效化合物。此外,还采用了筛选方法,从∼90,000 个化合物库中找出了命中化合物。根据对接得分和结合亲和力,阐明了前 100 个命中化合物,并根据 ADMET 和 Lipinski 的 RO5 过滤器将其进一步缩小到 50 个化合物。最后,选出了 10 个具有显著生物活性的化合物。其中,ZINC02136558 被选为强效先导化合物,它与 CDK13 活性位点和结合位点的氨基酸残基有很强的相互作用。此外,还进行了 200 ns 的全原子分子动态模拟,以探索系统的动态演化。最后,研究结果表明,ZINC02136558 可被视为抑制 CDK13 的潜在先导分子,并可用于癌症及相关疾病的治疗。
{"title":"Investigating the inhibitory potential of natural bioactive compounds against cyclin-dependent kinase 13: virtual high throughput screening and MD simulation studies to target CDK signaling.","authors":"Zehra, Farah Anjum, Talha Jawaid, Romana Ishrat, Md Imtaiyaz Hassan","doi":"10.1080/10799893.2024.2430495","DOIUrl":"10.1080/10799893.2024.2430495","url":null,"abstract":"<p><p>Cyclin-dependent kinase 13 (CDK13) belongs to the cyclin-dependent kinase (CDK) family that is actively involved in transcription regulation and RNA splicing. CDK13 binds with its partner, cyclin K, to regulate several biological processes. CDK13 and cyclin K complex phosphorylates RNA pol II carboxyl-terminal domain (CTD) at several serine residues, creating transcription elongation. The upregulation of the kinase contributes to tumor growth and cell proliferation, and is highly associated with various cancers, including skin, stomach, and ovarian. Thus, it can be considered an efficient therapeutic target for the development of drugs against cancer. In this work, a virtual high throughput screening (vHTS) of the ZINC library was carried out to elucidate the initial potent compounds. Further, filters were applied to identify the hit compounds among the ∼90,000 compound library. Based on the docking scores and binding affinity, the top 100 hits were elucidated, and they were further narrowed down to 50 compounds based on ADMET and Lipinski's RO5 filter. Finally, 10 compounds were chosen that showed appreciable biological activity. Among them, ZINC02136558 was selected as a potent lead compound that showed strong interaction with the amino acid residues of active and binding sites of CDK13. Furthermore, the all-atom molecular dynamic simulation was performed at 200 ns to explore the dynamic evolution of the system. Finally, the results showed that the ZINC02136558 may be considered as a potential lead molecule to inhibit CDK13 and implicated in therapeutic management of cancer and associated diseases.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"140-150"},"PeriodicalIF":2.6,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142693161","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The cannabinoid CB2 receptor positive allosteric modulator EC21a exhibits complicated pharmacology in vitro. 大麻素 CB2 受体正异位调节剂 EC21a 在体外表现出复杂的药理学特性。
IF 2.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-01 Epub Date: 2024-11-22 DOI: 10.1080/10799893.2024.2431986
Aidong Qi, Xueqing Han, Marc Quitalig, Jessica Wu, Plamen P Christov, KyuOk Jeon, Somnath Jana, Kwangho Kim, Darren W Engers, Craig W Lindsley, Alice L Rodriguez, Colleen M Niswender

Schizophrenia is a complex disease involving the dysregulation of numerous brain circuits and patients exhibit positive symptoms (hallucinations, delusions), negative symptoms (anhedonia), and cognitive impairments. We have shown that the antipsychotic efficacy of positive allosteric modulators (PAMs) of both the M4 muscarinic receptor and metabotropic glutamate receptor 1 (mGlu1) involve the retrograde activation of the presynaptic cannabinoid type-2 (CB2) receptor, indicating that CB2 activation or potentiation could result in a novel therapeutic strategy for schizophrenia. We used two complementary assays, receptor-mediated phosphoinositide hydrolysis and GIRK channel activation, to characterize a CB2 PAM scaffold, represented by the compound EC21a, to explore its potential as a starting point to optimize therapeutics for schizophrenia. These studies revealed that EC21a acts as an allosteric inverse agonist at CB2 in both assays and exhibits a mixed allosteric agonist/negative allosteric modulator profile at CB1 depending upon the assay used for profiling. A series of compounds related to EC21a also functioned as CB2 inverse agonists. Overall, these results suggest that EC21a exhibits complicated and potentially assay-dependent pharmacology, which may impact interpretation of in vivo studies.

精神分裂症是一种复杂的疾病,涉及众多大脑回路的失调,患者表现出阳性症状(幻觉、妄想)、阴性症状(失神)和认知障碍。我们已经证明,M4毒蕈碱受体和代谢谷氨酸受体1(mGlu1)的正性异位调节剂(PAMs)的抗精神病药效涉及突触前大麻素2型(CB2)受体的逆行激活,这表明CB2激活或增效可能会导致一种新型的精神分裂症治疗策略。我们使用了两种互补的检测方法,即受体介导的磷酸肌醇水解和 GIRK 通道激活,对以化合物 EC21a 为代表的 CB2 PAM 支架进行了表征,以探索其作为优化精神分裂症疗法起点的潜力。这些研究表明,EC21a 在两种检测方法中都是 CB2 的异位反向激动剂,而在 CB1 上则表现出异位激动剂/负性异位调节剂的混合特性,具体取决于用于分析的检测方法。与 EC21a 相关的一系列化合物也具有 CB2 反向激动剂的功能。总之,这些结果表明 EC21a 的药理作用复杂,可能与检测方法有关,这可能会影响体内研究的解释。
{"title":"The cannabinoid CB<sub>2</sub> receptor positive allosteric modulator EC21a exhibits complicated pharmacology <i>in vitro</i>.","authors":"Aidong Qi, Xueqing Han, Marc Quitalig, Jessica Wu, Plamen P Christov, KyuOk Jeon, Somnath Jana, Kwangho Kim, Darren W Engers, Craig W Lindsley, Alice L Rodriguez, Colleen M Niswender","doi":"10.1080/10799893.2024.2431986","DOIUrl":"10.1080/10799893.2024.2431986","url":null,"abstract":"<p><p>Schizophrenia is a complex disease involving the dysregulation of numerous brain circuits and patients exhibit positive symptoms (hallucinations, delusions), negative symptoms (anhedonia), and cognitive impairments. We have shown that the antipsychotic efficacy of positive allosteric modulators (PAMs) of both the M<sub>4</sub> muscarinic receptor and metabotropic glutamate receptor 1 (mGlu<sub>1</sub>) involve the retrograde activation of the presynaptic cannabinoid type-2 (CB<sub>2</sub>) receptor, indicating that CB<sub>2</sub> activation or potentiation could result in a novel therapeutic strategy for schizophrenia. We used two complementary assays, receptor-mediated phosphoinositide hydrolysis and GIRK channel activation, to characterize a CB<sub>2</sub> PAM scaffold, represented by the compound EC21a, to explore its potential as a starting point to optimize therapeutics for schizophrenia. These studies revealed that EC21a acts as an allosteric inverse agonist at CB<sub>2</sub> in both assays and exhibits a mixed allosteric agonist/negative allosteric modulator profile at CB<sub>1</sub> depending upon the assay used for profiling. A series of compounds related to EC21a also functioned as CB<sub>2</sub> inverse agonists. Overall, these results suggest that EC21a exhibits complicated and potentially assay-dependent pharmacology, which may impact interpretation of <i>in vivo</i> studies.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"151-159"},"PeriodicalIF":2.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11636628/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142687251","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An in-silico approach - molecular docking analysis of flavonoids against GSK-3β and TNF-α targets in Alzheimer's disease. 针对阿尔茨海默病中 GSK-3β 和 TNF-α 靶点的黄酮类化合物的分子对接分析。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-01 Epub Date: 2024-08-27 DOI: 10.1080/10799893.2024.2396430
Sittarthan Viswanathan, Rengaraj Sivaraj, A Hannah Rachel Vasanthi, Kavimani Subramanian, Vimalavathini Ramesh

Introduction: Drug development for Alzheimer's disease has one of the greatest failure rates of any therapeutic field and AD is still incurable. Glycogen synthase kinase-3β is a critical enzyme implicated in the pathogenesis of AD, particularly in the hyperphosphorylation of tau protein, which leads to the formation of neurofibrillary tangles. TNF-α also plays a significant role in the pathogenesis of Alzheimer's disease by promoting neuroinflammation, contributing to the formation of amyloid plaques and neurofibrillary tangles, impairing synaptic function, and disrupting the balance of neurotrophic factors. Phytomedicine has numerous advantages over synthetic medications, acting multiple mode of action, including being less toxic and having fewer adverse effects. Flavonoids act as a promising therapeutic target for treating Alzheimer's disease. The present work investigates the anti-AD potentials of 35 flavonoids for the inhibition of GSK-3β and TNF-α.

Methods: The physicochemical, pharmacokinetic parameters, toxicity profile and drug-likeliness of the selected 35 flavonoids were predicted using SwissADME & OSIRIS data Warrier property explorer web tool. All flavonoids were selected for docking studies on GSK-3β and TNF-α protein using Autodock 4.2.1.

Results: The predictions of this study suggested that among the selected 35 flavonoids, Top 3 flavonoids, such as Epicatechin gallate -10.93 kcal/mol, Fisetin -9.44 kcal/mol and Eriodictyol -8.54 kcal/mol for GSK-3β targets. TNF-α Fisetin -11.52 kcal/mol, Sterubin -10.87 kcal/mol, Biochainin A -10.69 kcal/mol were compared with standard drug donepezil.

Conclusion: Therefore, these flavonoids could be utilized as possible leads for the structure-based design in the advancement of new, strong Anti-Alzheimer's agents. However, more invitro and invivo analyses are required to finally confirm the outcomes of this research.

导言:在所有治疗领域中,阿尔茨海默病药物开发的失败率最高,而阿尔茨海默病至今仍无法治愈。糖原合成酶激酶-3β是与阿尔兹海默病发病机制有关的一种关键酶,特别是在tau蛋白过度磷酸化导致神经纤维缠结形成的过程中。TNF-α 在阿尔茨海默病的发病机制中也起着重要作用,它能促进神经炎症,促成淀粉样斑块和神经纤维缠结的形成,损害突触功能,破坏神经营养因子的平衡。与合成药物相比,植物药具有多种作用模式,包括毒性低、不良反应少等优势。类黄酮是治疗阿尔茨海默病的一个很有前景的治疗靶点。本研究探讨了 35 种黄酮类化合物抑制 GSK-3β 和 TNF-α 的抗老年痴呆症潜力:方法:利用SwissADME和OSIRIS数据Warrier Property explorer网络工具预测了所选35种黄酮类化合物的理化、药代动力学参数、毒性特征和可药性。使用 Autodock 4.2.1 对所有黄酮类化合物与 GSK-3β 和 TNF-α 蛋白进行了对接研究:该研究的预测结果表明,在选定的 35 种黄酮类化合物中,前 3 种黄酮类化合物(如表儿茶素没食子酸酯-10.93 kcal/mol、鱼腥草素-9.44 kcal/mol和桉叶油醇-8.54 kcal/mol)是 GSK-3β 的靶标。与标准药物多奈哌齐相比,TNF-α的飞沙素-11.52 kcal/mol、Sterubin-10.87 kcal/mol和Biochainin A-10.69 kcal/mol:因此,这些黄酮类化合物可作为基于结构设计的线索,用于开发新型强效抗老年痴呆症药物。不过,要最终确认这项研究的成果,还需要进行更多的体外和体内分析。
{"title":"An <i>in-silico</i> approach - molecular docking analysis of flavonoids against GSK-3β and TNF-α targets in Alzheimer's disease.","authors":"Sittarthan Viswanathan, Rengaraj Sivaraj, A Hannah Rachel Vasanthi, Kavimani Subramanian, Vimalavathini Ramesh","doi":"10.1080/10799893.2024.2396430","DOIUrl":"10.1080/10799893.2024.2396430","url":null,"abstract":"<p><strong>Introduction: </strong>Drug development for Alzheimer's disease has one of the greatest failure rates of any therapeutic field and AD is still incurable. Glycogen synthase kinase-3β is a critical enzyme implicated in the pathogenesis of AD, particularly in the hyperphosphorylation of tau protein, which leads to the formation of neurofibrillary tangles. TNF-α also plays a significant role in the pathogenesis of Alzheimer's disease by promoting neuroinflammation, contributing to the formation of amyloid plaques and neurofibrillary tangles, impairing synaptic function, and disrupting the balance of neurotrophic factors. Phytomedicine has numerous advantages over synthetic medications, acting multiple mode of action, including being less toxic and having fewer adverse effects. Flavonoids act as a promising therapeutic target for treating Alzheimer's disease. The present work investigates the anti-AD potentials of 35 flavonoids for the inhibition of GSK-3β and TNF-α.</p><p><strong>Methods: </strong>The physicochemical, pharmacokinetic parameters, toxicity profile and drug-likeliness of the selected 35 flavonoids were predicted using SwissADME & OSIRIS data Warrier property explorer web tool. All flavonoids were selected for docking studies on GSK-3β and TNF-α protein using Autodock 4.2.1.</p><p><strong>Results: </strong>The predictions of this study suggested that among the selected 35 flavonoids, Top 3 flavonoids, such as Epicatechin gallate -10.93 kcal/mol, Fisetin -9.44 kcal/mol and Eriodictyol -8.54 kcal/mol for GSK-3β targets. TNF-α Fisetin -11.52 kcal/mol, Sterubin -10.87 kcal/mol, Biochainin A -10.69 kcal/mol were compared with standard drug donepezil.</p><p><strong>Conclusion: </strong>Therefore, these flavonoids could be utilized as possible leads for the structure-based design in the advancement of new, strong Anti-Alzheimer's agents. However, more <i>invitro</i> and <i>invivo</i> analyses are required to finally confirm the outcomes of this research.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"73-81"},"PeriodicalIF":2.6,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142073131","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
UBE2C, targeted by miR-140-3p, promotes the progression of osteosarcoma via PI3K/AKT signaling pathway. miR-140-3p 靶向的 UBE2C 通过 PI3K/AKT 信号通路促进骨肉瘤的进展。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-01 Epub Date: 2024-11-05 DOI: 10.1080/10799893.2024.2423100
Wenze Huang, Yan Zhou, Jing Ren, Chunfa Chen

Background: UBE2C was reported to play carcinogenic effects in diverse cancers. However, the role of UBE2C in osteosarcoma was poorly understood, and its functional mechanisms were not fully clarified.

Methods: RT-qPCR was used to assess the expression of UBE2C mRNA and miR-140-3p, and western blot technique was used to examine the UBE2C protein and PI3K/AKT pathway-associated proteins. CCK-8 test was applied to measure cell proliferation, and wound healing assay were used to measure migration. Using animal studies, the function of UBE2C in vivo was evaluated. Dual-luciferase reporter assay was used to confirm the potential interaction among UBE2C and miR-140-3p.

Results: In osteosarcoma cells as well as tumor samples, UBE2C was strongly expressed. Osteosarcoma cell proliferation as well as cell migration were inhibited by UBE2C knockdown, and PI3K/AKT signaling activity was diminished. In addition, UBE2C knockdown impeded tumor growth in animal models. UBE2C expression was lessened by miR-140-3p as miR-140-3p targets it. UBE2C is overexpressed which promote osteosarcoma proliferation as well as migration, and strengthened the PI3K/AKT signaling activity, while forced miR-140-3p expression partially abolished these effects.

Conclusion: UBE2C, targeted by miR-140-3p, drove carcinogenic effects in osteosarcoma through activating the PI3K/AKT pathway.

背景:据报道,UBE2C在多种癌症中具有致癌作用。方法:采用 RT-qPCR 技术评估 UBE2C mRNA 和 miR-140-3p 的表达,并采用 Western blot 技术检测其在骨肉瘤中的作用:方法:采用 RT-qPCR 评估 UBE2C mRNA 和 miR-140-3p 的表达,采用 Western 印迹技术检测 UBE2C 蛋白和 PI3K/AKT 通路相关蛋白。CCK-8试验用于检测细胞增殖,伤口愈合试验用于检测细胞迁移。通过动物实验评估了 UBE2C 在体内的功能。使用双荧光素酶报告实验证实了 UBE2C 和 miR-140-3p 之间潜在的相互作用:结果:UBE2C在骨肉瘤细胞和肿瘤样本中均有强表达。结果:UBE2C在骨肉瘤细胞和肿瘤样本中强表达,UBE2C敲除抑制了骨肉瘤细胞的增殖和迁移,并降低了PI3K/AKT信号活性。此外,在动物模型中敲除 UBE2C 会阻碍肿瘤生长。由于 miR-140-3p 是 UBE2C 的靶点,因此 miR-140-3p 会降低 UBE2C 的表达。UBE2C的过度表达促进了骨肉瘤的增殖和迁移,并增强了PI3K/AKT信号活性,而强制表达miR-140-3p则部分消除了这些影响:结论:miR-140-3p靶向的UBE2C通过激活PI3K/AKT通路驱动骨肉瘤的致癌效应。
{"title":"UBE2C, targeted by miR-140-3p, promotes the progression of osteosarcoma via PI3K/AKT signaling pathway.","authors":"Wenze Huang, Yan Zhou, Jing Ren, Chunfa Chen","doi":"10.1080/10799893.2024.2423100","DOIUrl":"10.1080/10799893.2024.2423100","url":null,"abstract":"<p><strong>Background: </strong>UBE2C was reported to play carcinogenic effects in diverse cancers. However, the role of UBE2C in osteosarcoma was poorly understood, and its functional mechanisms were not fully clarified.</p><p><strong>Methods: </strong>RT-qPCR was used to assess the expression of UBE2C mRNA and miR-140-3p, and western blot technique was used to examine the UBE2C protein and PI3K/AKT pathway-associated proteins. CCK-8 test was applied to measure cell proliferation, and wound healing assay were used to measure migration. Using animal studies, the function of UBE2C <i>in vivo</i> was evaluated. Dual-luciferase reporter assay was used to confirm the potential interaction among UBE2C and miR-140-3p.</p><p><strong>Results: </strong>In osteosarcoma cells as well as tumor samples, UBE2C was strongly expressed. Osteosarcoma cell proliferation as well as cell migration were inhibited by UBE2C knockdown, and PI3K/AKT signaling activity was diminished. In addition, UBE2C knockdown impeded tumor growth in animal models. UBE2C expression was lessened by miR-140-3p as miR-140-3p targets it. UBE2C is overexpressed which promote osteosarcoma proliferation as well as migration, and strengthened the PI3K/AKT signaling activity, while forced miR-140-3p expression partially abolished these effects.</p><p><strong>Conclusion: </strong>UBE2C, targeted by miR-140-3p, drove carcinogenic effects in osteosarcoma through activating the PI3K/AKT pathway.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"107-114"},"PeriodicalIF":2.6,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142582882","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Acetylcholinesterase - glucose-regulated protein 78 binding site prediction, a hope to cure neurological disorders such as Alzheimer's disease. 乙酰胆碱酯酶--葡萄糖调节蛋白 78 结合位点预测,有望治愈阿尔茨海默病等神经系统疾病。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-01 Epub Date: 2024-11-10 DOI: 10.1080/10799893.2024.2426523
Ahmed M Ali, Ahmed A Mohamed, Ahmed N Ibrahim, Abdo A Elfiky

Cerebral amyloid plaques in the brain define the elderly neuralgic disorder, Alzheimer's disease (AD). The enzyme Acetylcholinesterase (AChE) was reported to play a vital role in AD. It was shown that AChE induces amyloid fibril formation forming highly toxic AChE-Amyloid-β (Aβ) complexes. AChE can accelerate amyloid formation, and its inhibition could prevent such alterations to the enzyme. Understanding the proteostasis of AChE and its binding site to cellular chaperone GRP78 (Glucose-regulated protein 78) would help find a treatment for AD. In this study, the state of the art computational tools were utilized to predict the binding location of AChE that can stably associate with the cellular chaperone, GRP78. Sequence comparison along with molecular docking predicts two binding locations on AChE (C69-C96 and C257-C272) that could bind to GRP78 substrate binding domain β (SBDβ). The analysis of the docking data suggests that the former location has the best average binding affinity value (-12.16 kcal/mol) and average interaction pattern (13.9 ± 3.5 H-bonds, 5.5 ± 1.4 hydrophobic contacts, and 1.4 ± 1.2 salt bridges).

大脑中的淀粉样斑块是老年神经性疾病--阿尔茨海默病(AD)的特征。据报道,乙酰胆碱酯酶(AChE)在阿尔兹海默病中起着至关重要的作用。研究表明,乙酰胆碱酯酶可诱导淀粉样纤维形成,形成毒性极强的乙酰胆碱酯酶-淀粉样-β(Aβ)复合物。AChE 可加速淀粉样蛋白的形成,而抑制 AChE 可防止酶的这种变化。了解AChE的蛋白稳态及其与细胞伴侣GRP78(葡萄糖调节蛋白78)的结合位点将有助于找到治疗AD的方法。本研究利用最先进的计算工具来预测 AChE 与细胞伴侣 GRP78 的结合位置。序列比较和分子对接预测了 AChE 上两个可以与 GRP78 底物结合域 β(SBDβ)结合的结合位置(C69-C96 和 C257-C272)。对接数据分析表明,前一个位置的平均结合亲和值(-12.16 kcal/mol)和平均相互作用模式(13.9 ± 3.5 个氢键、5.5 ± 1.4 个疏水接触和 1.4 ± 1.2 个盐桥)最好。
{"title":"Acetylcholinesterase - glucose-regulated protein 78 binding site prediction, a hope to cure neurological disorders such as Alzheimer's disease.","authors":"Ahmed M Ali, Ahmed A Mohamed, Ahmed N Ibrahim, Abdo A Elfiky","doi":"10.1080/10799893.2024.2426523","DOIUrl":"10.1080/10799893.2024.2426523","url":null,"abstract":"<p><p>Cerebral amyloid plaques in the brain define the elderly neuralgic disorder, Alzheimer's disease (AD). The enzyme Acetylcholinesterase (AChE) was reported to play a vital role in AD. It was shown that AChE induces amyloid fibril formation forming highly toxic AChE-Amyloid-β (Aβ) complexes. AChE can accelerate amyloid formation, and its inhibition could prevent such alterations to the enzyme. Understanding the proteostasis of AChE and its binding site to cellular chaperone GRP78 (Glucose-regulated protein 78) would help find a treatment for AD. In this study, the state of the art computational tools were utilized to predict the binding location of AChE that can stably associate with the cellular chaperone, GRP78. Sequence comparison along with molecular docking predicts two binding locations on AChE (C69-C96 and C257-C272) that could bind to GRP78 substrate binding domain β (SBDβ). The analysis of the docking data suggests that the former location has the best average binding affinity value (-12.16 kcal/mol) and average interaction pattern (13.9 ± 3.5 H-bonds, 5.5 ± 1.4 hydrophobic contacts, and 1.4 ± 1.2 salt bridges).</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"122-128"},"PeriodicalIF":2.6,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142622685","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Virtual screening, molecular docking and dynamics simulation studies to identify potential agonists of orphan receptor GPR78 targeting CNS disorders. 通过虚拟筛选、分子对接和动力学模拟研究,确定针对中枢神经系统疾病的孤儿受体 GPR78 的潜在激动剂。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-01 Epub Date: 2024-09-24 DOI: 10.1080/10799893.2024.2405488
Vasavi Garisetti, Roslin Elsa Varughese, Arthikasree Anandamurthy, Jebiti Haribabu, Claudio Allard Garrote, Gayathri Dasararaju

G protein-coupled receptors (GPCRs) are important targets in drug discovery because of their roles in physiological and pathological processes. Orphan GPCRs are GPCR proteins for which endogenous ligands have not yet been identified and they present interesting avenues for therapeutic intervention. This study focuses on GPR78, an orphan GPCR that is expressed in the central nervous system and linked to neurological disorders. GPR78 has no reported crystal structure and there is limited research. In this study, we have predicted the three dimensional model of GPR78 and its probable binding pocket. Structure-based virtual screening was carried out using the ChemDiv and Enamine REAL databases, followed by induced-fit docking studies to identify potential lead compounds with favorable interactions. These lead compounds were then embedded into a POPC lipid bilayer for a 200 ns molecular dynamics simulation. Free energy landscapes and MM-PBSA analyses were performed to assess the binding energies and conformational dynamics. The results highlight the dynamic nature of GPR78 in the presence of lead compounds and show favorable binding interactions. This study aims to predict a reliable three dimensional model of GPR78 and identify novel lead compounds through a comprehensive in silico approach. The identification of these potential GPR78 agonists represents a significant step in the development of new therapeutics for neurological disorders, highlighting the therapeutic potential of orphan GPR78 in CNS disorders.

由于 G 蛋白偶联受体(GPCR)在生理和病理过程中的作用,它们是药物发现的重要目标。孤儿 GPCR 是指尚未发现内源性配体的 GPCR 蛋白,它们为治疗干预提供了有趣的途径。本研究的重点是 GPR78,这是一种在中枢神经系统中表达并与神经系统疾病相关的孤儿 GPCR。GPR78 没有晶体结构的报道,研究也很有限。在本研究中,我们预测了 GPR78 的三维模型及其可能的结合口袋。我们利用 ChemDiv 和 Enamine REAL 数据库进行了基于结构的虚拟筛选,然后进行了诱导拟合对接研究,以确定具有有利相互作用的潜在先导化合物。然后将这些先导化合物嵌入 POPC 脂质双分子层,进行 200 ns 分子动力学模拟。自由能图谱和 MM-PBSA 分析用于评估结合能和构象动力学。结果凸显了 GPR78 在先导化合物存在下的动态性质,并显示出有利的结合相互作用。本研究旨在预测 GPR78 的可靠三维模型,并通过全面的硅学方法鉴定新型先导化合物。这些潜在的 GPR78 激动剂的鉴定是开发神经系统疾病新疗法的重要一步,凸显了孤儿 GPR78 在中枢神经系统疾病中的治疗潜力。
{"title":"Virtual screening, molecular docking and dynamics simulation studies to identify potential agonists of orphan receptor GPR78 targeting CNS disorders.","authors":"Vasavi Garisetti, Roslin Elsa Varughese, Arthikasree Anandamurthy, Jebiti Haribabu, Claudio Allard Garrote, Gayathri Dasararaju","doi":"10.1080/10799893.2024.2405488","DOIUrl":"10.1080/10799893.2024.2405488","url":null,"abstract":"<p><p>G protein-coupled receptors (GPCRs) are important targets in drug discovery because of their roles in physiological and pathological processes. Orphan GPCRs are GPCR proteins for which endogenous ligands have not yet been identified and they present interesting avenues for therapeutic intervention. This study focuses on GPR78, an orphan GPCR that is expressed in the central nervous system and linked to neurological disorders. GPR78 has no reported crystal structure and there is limited research. In this study, we have predicted the three dimensional model of GPR78 and its probable binding pocket. Structure-based virtual screening was carried out using the ChemDiv and Enamine REAL databases, followed by induced-fit docking studies to identify potential lead compounds with favorable interactions. These lead compounds were then embedded into a POPC lipid bilayer for a 200 ns molecular dynamics simulation. Free energy landscapes and MM-PBSA analyses were performed to assess the binding energies and conformational dynamics. The results highlight the dynamic nature of GPR78 in the presence of lead compounds and show favorable binding interactions. This study aims to predict a reliable three dimensional model of GPR78 and identify novel lead compounds through a comprehensive <i>in silico</i> approach. The identification of these potential GPR78 agonists represents a significant step in the development of new therapeutics for neurological disorders, highlighting the therapeutic potential of orphan GPR78 in CNS disorders.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"82-96"},"PeriodicalIF":2.6,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142307993","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Allosteric covalent inhibition of TOE1 as potential unexplored anti-cancer target: structure-based virtual screening and covalent molecular dynamics analysis. 作为潜在未开发抗癌靶点的 TOE1 的异位共价抑制:基于结构的虚拟筛选和共价分子动力学分析。
IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-01 Epub Date: 2024-10-08 DOI: 10.1080/10799893.2024.2411690
Ibrahim Oluwatobi Kehinde, Ernest Oduro-Kwateng, Mahmoud E S Soliman

Cancer remains a formidable challenge in therapeutic development owing to its complex molecular mechanisms and resistance to conventional treatments. Recent evidence suggests that TOE1 may play a role in cancer progression, making it an attractive target for therapeutic interventions, nevertheless, very limited research in literature has explored the potential of TOE1 inhibitors as anti-cancer. Herein, by exploring a library of 13,900 cysteine-targeted covalent inhibitors via a comprehensive virtual screening process, we sought to identify potential compounds that could be developed into effective cancer therapies against TOE1. The compounds were first screened based on their binding affinity, followed by their compliance with drug-like properties, and finally, by their effective covalent modeling to a reactive cysteine (Cys80). A total of 66 compounds, 28 compounds, and 3 compounds were found to have higher binding affinities, optimum drug-likeness, and higher covalent docking scores, respectively, than the reference compound. The top three screened compounds, 0462, 2204, and 7034, demonstrated favorable interaction profiles, covalent binding dynamics, free binding energetics, and per-residue energy contributions as compared to the reference compound. Notably, compound 0462 contributed to the highest free binding energy and significantly enhanced the stability and rigidity of TOE1, while restricting residue flexibility. This study provides an account of the molecular mechanics underpinning the covalent inhibition of TOE1, while providing a compelling case for further investigation and translation of the screened TOE1 inhibitors, particularly compound 0462, as novel therapeutics against cancer.

癌症由于其复杂的分子机制和对传统疗法的抗药性,仍然是治疗开发中的一项艰巨挑战。最近的证据表明,TOE1 可能在癌症进展中发挥作用,使其成为一个有吸引力的治疗干预靶点,然而,文献中探索 TOE1 抑制剂抗癌潜力的研究非常有限。在此,我们通过全面的虚拟筛选过程,探索了一个由 13,900 个半胱氨酸靶向共价抑制剂组成的化合物库,试图找出可开发成有效抗 TOE1 癌症疗法的潜在化合物。首先根据化合物的结合亲和力进行筛选,然后根据其是否符合药物的类似性质进行筛选,最后根据其与活性半胱氨酸(Cys80)的有效共价模型进行筛选。结果发现,分别有 66 个化合物、28 个化合物和 3 个化合物的结合亲和力、最佳类药物性和共价对接得分高于参考化合物。与参比化合物相比,筛选出的前三个化合物(0462、2204 和 7034)在相互作用概况、共价结合动力学、自由结合能量和每残基能量贡献方面均表现出优势。值得注意的是,化合物 0462 贡献了最高的自由结合能,并显著增强了 TOE1 的稳定性和刚性,同时限制了残基的灵活性。这项研究阐述了共价抑制 TOE1 的分子力学基础,同时为进一步研究和将筛选出的 TOE1 抑制剂(尤其是化合物 0462)转化为新型癌症疗法提供了有力的依据。
{"title":"Allosteric covalent inhibition of TOE1 as potential unexplored anti-cancer target: structure-based virtual screening and covalent molecular dynamics analysis.","authors":"Ibrahim Oluwatobi Kehinde, Ernest Oduro-Kwateng, Mahmoud E S Soliman","doi":"10.1080/10799893.2024.2411690","DOIUrl":"10.1080/10799893.2024.2411690","url":null,"abstract":"<p><p>Cancer remains a formidable challenge in therapeutic development owing to its complex molecular mechanisms and resistance to conventional treatments. Recent evidence suggests that TOE1 may play a role in cancer progression, making it an attractive target for therapeutic interventions, nevertheless, very limited research in literature has explored the potential of TOE1 inhibitors as anti-cancer. Herein, by exploring a library of 13,900 cysteine-targeted covalent inhibitors <i>via</i> a comprehensive virtual screening process, we sought to identify potential compounds that could be developed into effective cancer therapies against TOE1. The compounds were first screened based on their binding affinity, followed by their compliance with drug-like properties, and finally, by their effective covalent modeling to a reactive cysteine (Cys80). A total of 66 compounds, 28 compounds, and 3 compounds were found to have higher binding affinities, optimum drug-likeness, and higher covalent docking scores, respectively, than the reference compound. The top three screened compounds, 0462, 2204, and 7034, demonstrated favorable interaction profiles, covalent binding dynamics, free binding energetics, and per-residue energy contributions as compared to the reference compound. Notably, compound 0462 contributed to the highest free binding energy and significantly enhanced the stability and rigidity of TOE1, while restricting residue flexibility. This study provides an account of the molecular mechanics underpinning the covalent inhibition of TOE1, while providing a compelling case for further investigation and translation of the screened TOE1 inhibitors, particularly compound 0462, as novel therapeutics against cancer.</p>","PeriodicalId":16962,"journal":{"name":"Journal of Receptors and Signal Transduction","volume":" ","pages":"97-106"},"PeriodicalIF":2.6,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142391390","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Receptors and Signal Transduction
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1