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Identification of novel mycocompounds as inhibitors of PI3K/AKT/mTOR pathway against RCC. 新型真菌化合物作为抗RCC PI3K/AKT/mTOR通路抑制剂的鉴定。
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 DOI: 10.1080/10799893.2022.2123515
Ravi Prakash Yadav, Srilagna Chatterjee, Arindam Chatterjee, Dilip Kumar Pal, Sudakshina Ghosh, Krishnendu Acharya, Madhusudan Das

PI3K/AKT/mTOR pathway is one of the frequently disrupted signaling pathways in renal cell carcinoma (RCC) that plays a significant role in tumor formation, disease progression and therapeutic resistance. Therefore, novel natural molecules targeting the critical proteins of this pathway will provide the best alternative to existing drugs, which are toxic and develops resistance. Recent studies have recognized the anti-cancer therapeutic potential of mycocompounds. The current study is focused on screening various mycocompounds from Astraeus hygrometricus against key cancer signaling proteins phosphoinositide 3-kinase (PI3K), protein kinase B, PKB (AKT1) and mammalian target of rapamycin (mTOR). We also studied in-silico cancer cells cytotoxicity and ADMET (absorption, distribution, metabolism, excretion and toxicity) profiles to elucidate the molecular mechanism against RCC and also to uncover the pharmacokinetic profile of these compounds. Astrakurkurone and Ergosta-4,6, 8-(14) 22-tetraene-3-one were the two most efficacious compounds with highest interaction scores and bonding. These compounds were both active against RCC4 and VMRC-RCZ cell lines of RCC. The ADME profiles of both were satisfactory based on druglikeness and bioavailability score criteria. Thus, this proposed study identified astrakurkurone and ergosta-4,6, 8-(14) 22-tetraene-3-one as potential anticancer drug candidates, and provides comparative structural insight into their binding to the 3 protein kinases.

PI3K/AKT/mTOR通路是肾细胞癌(RCC)中经常被破坏的信号通路之一,在肿瘤形成、疾病进展和治疗耐药中起重要作用。因此,针对这一途径的关键蛋白质的新型天然分子将为现有的有毒和产生耐药性的药物提供最佳替代方案。最近的研究已经认识到真菌化合物的抗癌治疗潜力。目前的研究重点是筛选湿法黄芪中各种真菌化合物对关键癌症信号蛋白磷酸肌肽3激酶(PI3K)、蛋白激酶B、PKB (AKT1)和哺乳动物雷帕霉素靶点(mTOR)的抑制作用。我们还研究了硅癌细胞的细胞毒性和ADMET(吸收、分布、代谢、排泄和毒性)谱,以阐明抗RCC的分子机制,并揭示这些化合物的药代动力学谱。黄芪甲酮和麦角- 4,6,8 -(14)22-四烯-3- 1是两种最有效的化合物,具有最高的相互作用得分和键合。这些化合物对RCC4和VMRC-RCZ细胞系均有活性。基于药物相似度和生物利用度评分标准,两者的ADME谱均令人满意。因此,本研究确定了astrakurkurone和麦角糖- 4,6,8 -(14)22-四烯-3- 1作为潜在的抗癌候选药物,并提供了它们与3种蛋白激酶结合的比较结构见解。
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引用次数: 0
Ozone protects cardiomyocytes from myocardial ischemia-reperfusion injury through miR-200c/FOXO3 axis. 臭氧通过miR-200c/FOXO3轴保护心肌细胞免受心肌缺血再灌注损伤。
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 DOI: 10.1080/10799893.2022.2060259
Lian Zhang, Xingping Men, Shenglong Yu, Huizhuang Guo, Yi Luo, Hanwei Chen, Shaohua Mi

Purpose: Myocardial ischemia-reperfusion injury (I/R) is a detrimental process contributing to the pathological progression of coronary artery diseases. Studies indicate that miRNAs are implicated in ischemic heart disease, and ozone therapy could protect the heart from ischemic heart disease. In this study, we investigated the effect of ozone on miR-200c expression and the potential role of miR-200c in an I/R myocardial injury model.

Methods: A myocardial cellular model of I/R was established to detect the expression of miR-200c. Cardiomyocytes with I/R induction were treated with ozone as a cellular model to detect miR-200 expression and investigate its functional roles. The downstream target of miR-200c was predicted with Starbase online tools and validated by dual luciferase reporter assay. The function of miR-200c/FOXO3 axis in I/R was examined by CCK-8 proliferation and apoptotic assays.

Results: miR-200c was upregulated in primary cardiomyocytes of the I/R model. In cardiomyocyte cells, cell proliferation in the I/R group was significantly impaired, which could be partially rescued by miR-200c inhibitor or ozone treatment. Cell death detected by LDH release and apoptosis assay in the I/R model could also be inhibited by miR-200c inhibitor or ozone treatment. FOXO3 was identified as a downstream target of miR-200c, which was induced by ozone treatment and suppressed by miR-200c. Silencing FOXO3 abrogated the protective effect of ozone treatment on the I/R cell model.

Conclusion: Overall, our results suggest that ozone plays a cardio-protective role in I/R through regulating miR-200/FOXO3 axis, and indicate that targeting miR-200/FOXO3 axis could potentially alleviate I/R.

目的:心肌缺血再灌注损伤(I/R)是导致冠状动脉疾病病理进展的一个有害过程。研究表明,mirna与缺血性心脏病有关,臭氧治疗可以保护心脏免受缺血性心脏病的侵害。在这项研究中,我们研究了臭氧对miR-200c表达的影响以及miR-200c在I/R心肌损伤模型中的潜在作用。方法:建立I/R心肌细胞模型,检测miR-200c的表达。用臭氧处理I/R诱导的心肌细胞作为细胞模型,检测miR-200的表达并研究其功能作用。使用Starbase在线工具预测miR-200c的下游靶标,并通过双荧光素酶报告基因试验进行验证。通过CCK-8增殖和凋亡实验检测miR-200c/FOXO3轴在I/R中的功能。结果:miR-200c在I/R模型原代心肌细胞中表达上调。在心肌细胞中,I/R组细胞增殖明显受损,可通过miR-200c抑制剂或臭氧处理部分恢复。在I/R模型中,通过LDH释放和凋亡实验检测到的细胞死亡也可以通过miR-200c抑制剂或臭氧处理来抑制。FOXO3被确定为miR-200c的下游靶点,通过臭氧处理诱导并被miR-200c抑制。沉默FOXO3消除了臭氧处理对I/R细胞模型的保护作用。结论:总体而言,我们的研究结果表明臭氧通过调节miR-200/FOXO3轴在I/R中发挥心脏保护作用,并且表明靶向miR-200/FOXO3轴可能会减轻I/R。
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引用次数: 2
Methylglyoxal enhances the proliferation of vascular smooth muscle cells via Akt phosphorylation. 甲基乙二醛通过Akt磷酸化促进血管平滑肌细胞的增殖。
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 DOI: 10.1080/10799893.2022.2098328
Mustafa Kırça

Methylglyoxal (MGO) is predominantly produced as a by-product of the glycolysis pathway. The glyoxalase system effectively removes it in a healthy organism. However, this process is impaired, and MGO level is elevated in people with diabetes. MGO's effects on proliferation were mostly studied in cancer cells, and the data in other cell types are limited. This study inspected the proliferative capacity of MGO in vascular smooth muscle cells (VSMCs), which have a crucial role in atherosclerosis and restenosis. The roles of ERK1/2 MAPK and Akt phosphorylations in proliferation were determined. Telmisartan, irbesartan, and NF-κB inhibitor JSH-23's roles in protecting the cells from MGO-induced proliferation were also investigated. Primary VSMCs were isolated from the rat aorta. The proliferation was spectrophotometrically measured by using a tetrazolium salt (Wst-1). The cells were cultured in standard media (SM, glucose conc. 5.5 mM) or high glucose media (HGM, glucose conc. 25 mM; an in vitro model of hyperglycemia). ERK1/2 MAPK and Akt phosphorylations were determined by the western blot method. MGO triggered the proliferation at 24, 48, and 72 hrs in SM and 48 and 72 hrs in HGM. Low doses of MGO such as 1-10 µM can induce proliferation. The phosphorylated ERK1/2 MAPK and Akt participated in MGO-induced proliferation. Telmisartan, irbesartan, and JSH-23 effectively alleviated the proliferation and Akt phosphorylation. MGO could proliferate VSMCs even at low doses. Moreover, hypertensive diabetic patients might benefit from a sartan family drug to protect VSMCs from MGO-induced proliferation.

甲基乙二醛(MGO)主要作为糖酵解途径的副产物产生。乙二醛酶系统在一个健康的生物体中有效地去除它。然而,这一过程受损,糖尿病患者的MGO水平升高。MGO对细胞增殖的影响主要是在癌细胞中研究,其他细胞类型的研究数据有限。本研究检测了MGO在血管平滑肌细胞(VSMCs)中的增殖能力,血管平滑肌细胞在动脉粥样硬化和再狭窄中起关键作用。确定ERK1/2 MAPK和Akt磷酸化在细胞增殖中的作用。我们还研究了替米沙坦、厄贝沙坦和NF-κB抑制剂JSH-23对mgo诱导的细胞增殖的保护作用。从大鼠主动脉分离原代VSMCs。用四氮唑盐(Wst-1)分光光度法测定细胞增殖。细胞在标准培养基中培养(SM,葡萄糖培养基)。5.5 mM)或高糖培养基(HGM,葡萄糖conc。25毫米;体外高血糖模型)。western blot法检测ERK1/2 MAPK和Akt磷酸化水平。MGO在SM和HGM分别于24、48、72小时和48、72小时触发细胞增殖。低剂量MGO(1-10µM)可诱导增殖。磷酸化的ERK1/2 MAPK和Akt参与了mgo诱导的增殖。替米沙坦、厄贝沙坦和JSH-23均能有效缓解细胞增殖和Akt磷酸化。即使在低剂量下,MGO也能使VSMCs增殖。此外,高血压糖尿病患者可能受益于沙坦家族药物,以保护VSMCs免受mgo诱导的增殖。
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引用次数: 0
Crosstalk between kisspeptin and gonadotropin-inhibitory hormone in the silence of puberty: preclinical evidence from a calcium signaling study. kisspeptin和促性腺激素抑制激素在青春期沉默中的串扰:来自钙信号研究的临床前证据。
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 DOI: 10.1080/10799893.2022.2125014
Ferah Bulut, Emine Kacar, Batuhan Bilgin, Munevver Gizem Hekim, Muhammed Mirac Keleştemur, Zafer Sahin, Ahmet Ayar, Mete Ozcan

Kisspeptin and gonadotropin-inhibitory hormone (GnIH) are among suggested neuroendocrine modulators of reproductive function. Intracellular calcium signaling is a critical component in the regulation of a variety of physiological and pathological processes including neurotransmitter release, and, therefore, can be used as signaling indicator for investigating the involvement of kisspeptin, GnIH, and gonadotropin-releasing hormone (GnRH) release. Hence, this study investigated the effects of kisspeptin and GnIH on calcium signaling using immortalized hypothalamic cells (rHypoE-8) as a model. Kisspeptin neurons were loaded with the ratiometric calcium dye (Fura-2 AM, 1 μmol) and intracellular free calcium ([Ca2+]i) responses were quantified using digital fluorescence imaging system. Kisspeptin-10 (100, 300, and 1000 nM) caused a significant increase in [Ca2+]i in rHypoE-8 cells (n = 58, n = 64, and n = 49, respectively, p < 0.001). The kisspeptin receptor antagonist, P234, inhibited the calcium responses to kisspeptin (p < 0.001, n = 32). GnIH (100 and 1000 nM), alone, did not cause any significant change in the mean basal [Ca2+]i levels in kisspeptin cells, but GnIH attenuated the kisspeptin-evoked [Ca2+]i transients (n = 47, p < 0.001). This novel findings of [Ca2+]i signaling in in vitro setting implicate that kisspeptin and GnIH may exert their effects on hypothalamus-pituitary-gonadal (HPG) axis by modulating kisspeptin neurons. These results also implicate that kisspeptin neurons may have an autocrine regulation.

Kisspeptin和促性腺激素抑制激素(GnIH)被认为是生殖功能的神经内分泌调节剂。细胞内钙信号是调节包括神经递质释放在内的多种生理和病理过程的关键组成部分,因此可以作为研究kisspeptin、GnIH和促性腺激素释放激素(GnRH)释放参与的信号转导指标。因此,本研究以永生化下丘脑细胞(rHypoE-8)为模型,研究kisspeptin和GnIH对钙信号传导的影响。将Kisspeptin神经元加载比例钙染料(Fura-2 AM, 1 μmol),用数字荧光成像系统定量细胞内游离钙([Ca2+]i)的响应。Kisspeptin-10(100,300和1000 nM)引起rHypoE-8细胞[Ca2+]i显著升高(n = 58, n = 64和n = 49, p p n = 32)。单独GnIH (100 nM和1000 nM)未引起kisspeptin细胞平均基础[Ca2+]i水平的显著变化,但GnIH减弱了kisspeptin诱发的[Ca2+]i瞬变(n = 47, p 2+]i信号),提示kisspeptin和GnIH可能通过调节kisspeptin神经元对下丘脑-垂体-性腺(HPG)轴起作用。这些结果也暗示kisspeptin神经元可能具有自分泌调节作用。
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引用次数: 1
Pharmacological characterization of the α2A-adrenergic receptor inhibiting rat hippocampal CA3 epileptiform activity: comparison of ligand efficacy and potency. 抑制大鼠海马 CA3 癫痫样活动的 α2A-肾上腺素能受体的药理学特征:配体功效和效力的比较。
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 Epub Date: 2022-08-19 DOI: 10.1080/10799893.2022.2110896
Joseph P Biggane, Ke Xu, Brianna L Goldenstein, Kylie L Davis, Elizabeth J Luger, Bethany A Davis, Chris W D Jurgens, Dianne M Perez, James E Porter, Van A Doze

The mechanism underlying the antiepileptic actions of norepinephrine (NE) is unclear with conflicting results. Our objectives are to conclusively delineate the specific adrenergic receptor (AR) involved in attenuating hippocampal CA3 epileptiform activity and assess compounds for lead drug development. We utilized the picrotoxin model of seizure generation in rat brain slices using electrophysiological recordings. Epinephrine (EPI) reduced epileptiform burst frequency in a concentration-dependent manner. To identify the specific receptor involved in this response, the equilibrium dissociation constants were determined for a panel of ligands and compared with established binding values for α1, α2, and other receptor subtypes. Correlation and slope of unity were found for the α2A-AR, but not other receptors. Effects of different chemical classes of α-AR agonists at inhibiting epileptiform activity by potency (pEC50) and relative efficacy (RE) were determined. Compared with NE (pEC50, 6.20; RE, 100%), dexmedetomidine, an imidazoline (pEC50, 8.59; RE, 67.1%), and guanabenz, a guanidine (pEC50, 7.94; RE, 37.9%), exhibited the highest potency (pEC50). In contrast, the catecholamines, EPI (pEC50, 6.95; RE, 120%) and α-methyl-NE (pEC50, 6.38; RE, 116%) were the most efficacious. These findings confirm that CA3 epileptiform activity is mediated solely by α2A-ARs without activation of other receptor systems. These findings suggest a pharmacotherapeutic target for treating epilepsy and highlight the need for selective and efficacious α2A-AR agonists that can cross the blood-brain barrier.

去甲肾上腺素(NE)抗癫痫作用的机制尚不清楚,结果也相互矛盾。我们的目标是最终确定参与减弱海马 CA3 癫痫样活动的特定肾上腺素能受体 (AR),并评估用于先导药物开发的化合物。我们利用电生理记录在大鼠脑片上建立了癫痫发作的微毒素模型。肾上腺素(EPI)以浓度依赖的方式降低了癫痫样爆发频率。为了确定参与这种反应的特定受体,测定了一组配体的平衡解离常数,并与α1、α2和其他受体亚型的既定结合值进行了比较。结果发现,α2A-AR 与其他受体的相关性和斜率相同。测定了不同化学类别的α-AR激动剂抑制癫痫样活动的效力(pEC50)和相对效力(RE)。与 NE(pEC50,6.20;RE,100%)相比,咪唑啉类右美托咪定(pEC50,8.59;RE,67.1%)和胍类胍(pEC50,7.94;RE,37.9%)表现出最高的效力(pEC50)。相比之下,儿茶酚胺、EPI(pEC50,6.95;RE,120%)和α-甲基-NE(pEC50,6.38;RE,116%)的效力最高。这些研究结果证实,CA3 癫痫样活动仅由α2A-ARs 介导,而没有激活其他受体系统。这些发现提出了治疗癫痫的药物治疗靶点,并强调了对可穿过血脑屏障的选择性和高效α2A-AR激动剂的需求。
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引用次数: 1
Can calcitonin gene-related peptide (CGRP) and pentraxin-3 (PTX-3) be useful in diagnosing acute migraine attack? 降钙素基因相关肽(CGRP)和戊素-3 (PTX-3)在诊断急性偏头痛发作中有用吗?
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-12-01 DOI: 10.1080/10799893.2022.2097264
Sevilay Vural, Levent Albayrak

Purpose: Even if migraine is not fatal, it is a common and challenging disease with adverse effects on individuals' lives. The lack of objective diagnostic tools causes delays in diagnosis and treatment initiation. The primary aim of this study is to reveal the diagnostic value of Calcitonin Gene-Related Peptide (CGRP) and Pentraxin-3 (PTX-3) in acute migraine. To this aim, we compared the serum CGRP and PTX-3 levels of migraine patients with acute attacks to those in healthy individuals.

Material and method: A total of 135 individuals (85 patients with migraine attacks with or without aura and 50 healthy controls) participated in the study. Serum CGRP and PTX-3 levels were measured with ELISA analysis. A p value less than 0.05 was considered significant.

Results: Serum CGRP [146.70 (21.52-413.67) vs. 65.90 (3.80-256.60) pg/mL] and PTX-3 levels [12.71 (0.62-33.97) vs. 1.01 (0.06-9.48) ng/mL] were higher in patients with migraine attack than the control group (p < 0.01 and p < 0.01, respectively). ROC analysis showed that the cutoff value for serum CGRP was 121.39 pg/mL (AUC: 0.751, Sen:%61, Spe:%64) whereas the cutoff value for PTX-3 was 4,06 ng/mL (AUC:0.876, Sen:%73, Spe:%76). Serum CGRP levels were positively correlated with pain intensity. Serum CGRP and PTX-3 levels did not differ across gender groups and presence of aura in subgroup analysis.

Conclusion: Patients with acute migraine attacks have higher serum CGRP and PTX-3 levels than controls. Both biomarkers show high potential for the diagnosis of a migraine attack.

目的:即使偏头痛不是致命的,它也是一种常见和具有挑战性的疾病,对个人的生活产生不利影响。缺乏客观的诊断工具导致诊断和治疗开始的延误。本研究的主要目的是揭示降钙素基因相关肽(CGRP)和戊traxin-3 (PTX-3)在急性偏头痛中的诊断价值。为此,我们比较了急性发作偏头痛患者与健康人群的血清CGRP和PTX-3水平。材料和方法:共有135人(85名有或没有先兆的偏头痛患者和50名健康对照者)参加了这项研究。ELISA法检测血清CGRP、PTX-3水平。p值小于0.05为显著性。结果:偏头痛发作组血清CGRP[146.70(21.52-413.67)比65.90 (3.80-256.60)pg/mL]和PTX-3水平[12.71(0.62-33.97)比1.01 (0.06-9.48)ng/mL]高于对照组(p < 0.05)。结论:急性偏头痛发作组血清CGRP和PTX-3水平高于对照组。这两种生物标志物都显示出诊断偏头痛发作的高潜力。
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引用次数: 2
Determination of cytokine profile and associated genes of the signaling pathway in HNSCC. HNSCC细胞因子谱及信号通路相关基因的测定。
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-10-01 Epub Date: 2021-12-09 DOI: 10.1080/10799893.2021.2013888
Aysel Kalayci Yigin, Ali Azzawri, Kayhan Ozturk, Tulin Cora, Mehmet Seven

Head and neck squamose cell carcinoma (HNSCC) is an aggressive group of tumors that are generally heterogeneous. Despite treatment advances, disease-free survival has not significantly improved. Therefore, it is of great importance to understand the molecular etiology of HNSCC and genetic alterations in the signal pathways in order to develop new therapeutic approaches. In this study, firstly we used a cytokine array to analyze the secretomes of HNSCC patients and healthy controls. In the next step, the results from the cytokine sequence were validated by qRT-PCR and western blot, including genes in the associated signaling pathway. In array analysis, the levels of EGF, IGF-1, IGFBP-1, and PDGFBB were significantly higher in patients than in the controls. The results of qRT-PCR analyses showed that expression levels of PDGFRB gene were significantly up-regulated (p = 0.006) and PTEN (p > 0.001) were significantly down-regulated in tumors compared with normal tissues. When groups (early vs. advanced) were compared, higher expression of IGFBP-1 was observed in the larynx (p = 0.045) and larynx + oral cavity tumors (p = 0.010) in an advanced stage. In western blot analysis, pEGFR, pIGF-IR, pIR-β, pPDGFRB, and pAKT levels were upregulated, and pPTEN was downregulated in tumors. Based on our observations, determining the interactions of EGFR, PDGFRB, IGF-1R and PTEN or the activation of each might represent a promising new and innovative treatment approach in HNSCC patients. It seems clear that, in most cancers, effective targeted therapy may be involved the blockade of each one or multiple targets.

头颈部鳞状细胞癌(HNSCC)是一种侵袭性肿瘤,通常是异质性的。尽管治疗取得了进展,但无病生存率并没有显著提高。因此,了解HNSCC的分子病因和信号通路的遗传改变对于开发新的治疗方法具有重要意义。在这项研究中,我们首先使用细胞因子阵列分析了HNSCC患者和健康对照者的分泌组。下一步,通过qRT-PCR和western blot验证细胞因子序列的结果,包括相关信号通路中的基因。在阵列分析中,患者的EGF、IGF-1、IGFBP-1和PDGFBB水平显著高于对照组。qRT-PCR分析结果显示,与正常组织相比,肿瘤组织中PDGFRB基因表达水平显著上调(p = 0.006), PTEN基因表达水平显著下调(p > 0.001)。比较各组(早期和晚期),IGFBP-1在喉部(p = 0.045)和喉部+口腔肿瘤(p = 0.010)中表达较高。western blot结果显示,肿瘤组织中pEGFR、pIGF-IR、pIR-β、pPDGFRB和pAKT表达上调,pPTEN表达下调。根据我们的观察,确定EGFR、PDGFRB、IGF-1R和PTEN的相互作用或每一种的激活可能代表了一种有希望的治疗HNSCC患者的新方法。很明显,在大多数癌症中,有效的靶向治疗可能包括阻断每个或多个靶点。
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引用次数: 0
Integrated computational approach for in silico design of new purinyl pyridine derivatives as B-Raf kinase inhibitors. 新型嘌呤基吡啶衍生物B-Raf激酶抑制剂的集成计算机设计方法。
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-10-01 Epub Date: 2021-11-29 DOI: 10.1080/10799893.2021.1999472
Vinutha Kuchana, Vaeshnavi Kashetti, Sai Kiran Reddy Peddi, Sreekanth Sivan, Vijjulatha Manga

B-Raf is one among the most frequently mutating proto-oncogene which is associated with the serine/threonine Raf kinase family involved in the RAS-RAF-MEK-ERK pathway, which is the most deregulated pathway in human cancers. Mutant B-Raf V600E got an excellent scope for investigation in cancer as a potential therapeutic target. Formerly B-RafV600E is considered the molecular target for numerous antitumor compounds like purinyl pyridine and pyrimidine derivatives. In the current research work using molecular docking approach of Schrodinger Glide 5.6 version, ligand docking, pharmacophore-based virtual screening, binding free energy calculations of a series of 2-amino purinyl pyridine and pyrimidine derivatives were modeled, their docking values were predicted, that were considered to be potent against B-Raf V600E. A five-point hypothesis accompanied by a hydrogen bond acceptor(A), two hydrogen bond donors(D), and two aromatic rings (R) was built with a justifiable R2 value of 0.91 and a Q2 value of 0.64. Then by using Asinex Elite Synergy database, virtual screening was performed, and identified several potential hits. Subsequently, the molecules which had interactions with the target B-Raf kinase were determined by subjecting the obtained hits for SP and XP docking processes. Finally, for the top leads obtained, binding free energies were accomplished. About 16 new purinyl pyridine molecules were also designed. Almost nine molecules manifested crucial ligand interactions and binding free energies. At the outset, this research paved the way for us in spotting new molecules with B-Raf inhibitory activity, which can further be explored to design molecules with enhanced pharmacokinetic profiles.

B-Raf是最常突变的原癌基因之一,它与丝氨酸/苏氨酸Raf激酶家族相关,参与RAS-RAF-MEK-ERK途径,这是人类癌症中最不受管制的途径。突变体B-Raf V600E作为潜在的治疗靶点,在癌症研究中具有很好的应用前景。以前B-RafV600E被认为是许多抗肿瘤化合物的分子靶标,如嘌呤基吡啶和嘧啶衍生物。在目前的研究工作中,利用Schrodinger Glide 5.6版本的分子对接方法,对一系列2-氨基嘌呤基吡啶和嘧啶衍生物进行了配体对接、基于药物载体的虚拟筛选、结合自由能计算等建模,并对其对接值进行了预测,认为它们对B-Raf V600E具有强效。建立了由一个氢键受体(A)、两个氢键给体(D)和两个芳香环(R)组成的五点假设,R2值为0.91,Q2值为0.64。然后使用Asinex Elite Synergy数据库进行虚拟筛选,并确定了几个潜在的命中目标。随后,通过获得的SP和XP对接过程命中来确定与目标B-Raf激酶相互作用的分子。最后,对得到的顶部引线进行束缚自由能的计算。同时还设计了16个新的嘌呤基吡啶分子。几乎有9个分子表现出关键的配体相互作用和结合自由能。首先,这项研究为我们发现具有B-Raf抑制活性的新分子铺平了道路,可以进一步探索设计具有增强药代动力学特征的分子。
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引用次数: 2
Endothelial progenitor cells promote neural stem cell proliferation in hypoxic conditions through VEGF via the PI3K/AKT pathway. 内皮祖细胞通过PI3K/AKT通路通过VEGF促进缺氧条件下神经干细胞的增殖。
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-10-01 DOI: 10.1080/10799893.2021.2019275
Jingti Jing, Haoming Jiang, Lin Zhang

Neurons and vascular cells compose neurovascular niches in the central nervous system where endothelial cells can promote neurogenesis via direct and indirect effects. Neurocytes and vascular cells are gravely destroyed upon spinal cord injury, which severely affects spinal motor functions. Neurogenesis originates from neural stem cells (NSCs) and endothelial cells derived from endothelial progenitor cells (EPCs) in the spinal cord. To demonstrate whether EPCs promote NSC proliferation, we cultured NSCs with EPC-conditioned medium from hypoxic conditions (CM) and EPC-unconditioned medium (UCM), i.e. endothelial cell basal medium-2, as a control. The number of S-phase cells in CM were 54.73 ± 0.67 whereas those in UCM were 26.30 ± 0.43, and the number of cells in CM was higher than that in UCM (0.32 ± 0.0019 vs. 0.55 ± 0.0029). We hypothesized that the cell proliferation was promoted by vascular endothelial growth factor A (VEGFA), which is secreted by EPCs in hypoxic conditions. We then used VEGF shRNA to decrease VEGFA secretion by EPCs. NSCs were cultured in conditioned medium from shRNA transfected EPCs under hypoxia (shRNA-CM) and EPC-conditioned medium under hypoxia (CM). The number of S-phase cells in the shRNA-CM was 36.86 ± 0.49 whereas that in CM was 53.61 ± 0.89, and the number of cells in the shRNA-CM was lower than that in CM (0.55 ± 0.0032 vs. 0.34 ± 0.0029). These data indicate that EPCs could promote NSC proliferation in hypoxic condition through VEGFA secretion.

神经元和血管细胞构成中枢神经系统的神经血管壁龛,内皮细胞通过直接和间接作用促进神经发生。脊髓损伤严重破坏神经细胞和血管细胞,严重影响脊髓运动功能。神经发生起源于神经干细胞(NSCs)和脊髓内皮祖细胞(EPCs)衍生的内皮细胞。为了证明EPCs是否促进NSC增殖,我们用缺氧条件下的EPCs条件培养基(CM)和内皮细胞基础培养基(UCM)培养NSCs作为对照。CM组s期细胞数为54.73±0.67个,UCM组为26.30±0.43个,且CM组细胞数高于UCM组(0.32±0.0019比0.55±0.0029)。我们假设缺氧条件下EPCs分泌的血管内皮生长因子A (VEGFA)促进了细胞增殖。然后我们使用VEGF shRNA减少EPCs的VEGFA分泌。将shRNA转染的EPCs在缺氧条件下(shRNA-CM)和缺氧条件下的EPCs条件培养基(CM)中培养NSCs。shRNA-CM中的s期细胞数为36.86±0.49个,而CM中的s期细胞数为53.61±0.89个,且shRNA-CM中的细胞数低于CM(0.55±0.0032 vs. 0.34±0.0029)。提示缺氧条件下EPCs可通过VEGFA分泌促进NSC增殖。
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引用次数: 4
Target-based in-silico screening of basil polysaccharides against different epigenetic targets responsible for breast cancer. 罗勒多糖对乳腺癌不同表观遗传靶标的靶向性筛选。
IF 2.8 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-10-01 Epub Date: 2022-07-21 DOI: 10.1080/10799893.2022.2058016
Nancy Bhura, Pawan Gupta, Jeena Gupta

Purpose: Breast cancer (BC) is one of the leading types of cancer found in women. One of the causes reported for BC is improper regulation of epigenetic modifications. Various epigenetic targets such as histone deacetylases (HDAC) and histone acetyltransferases (HAT) regulate many types of cancer, including BC. Basil is known to possess anti-cancer properties; however, the role of its polysaccharides against different epigenetic targets is still not very clear. Therefore, the molecular docking method is used to find out the binding potential of the BPSs against different epigenetic targets responsible for BC.

Methods: All the basil polysaccharides (BPSs) were screened against the diverse epigenetic targets reported for BC (HDAC1-2, 4-8, and HAT) using molecular docking studies alongwith swissADME studies to check the drug likeliness of the BPSs.

Results: It was found that glucosamine ring, glucosamine linear, glucuronic acid linear, rhamnose linear, glucuronic acid ring, galactose ring, mannose, glucose, and xylose were exhibited consistent binding potential against the epigenetic targets (HDAC1, HDAC2, HDAC4, HDAC5, HDAC6, HDAC7, HDAC8, and HAT,) responsible for BC.

Conclusion: This is the first report where BPSs were reported against these epigenetic targets. These studies can help to understand the underlying mechanism of BPSs used against epigenetic targets for BC. These results can be further validated experimentally to confirm their potential as a promising inhibitor against the epigenetic targets (HDAC1-2, 4-8, and HAT) having a role in BC.

目的:乳腺癌(BC)是女性中发现的主要癌症类型之一。据报道,导致BC的原因之一是表观遗传修饰调控不当。各种表观遗传靶点,如组蛋白去乙酰化酶(HDAC)和组蛋白乙酰转移酶(HAT)调节许多类型的癌症,包括BC。罗勒被认为具有抗癌特性;然而,其多糖对不同表观遗传靶点的作用尚不清楚。因此,我们采用分子对接的方法来寻找bps对不同的BC表观遗传靶点的结合潜力。方法:利用分子对接研究和swissADME研究对所有罗勒多糖(bps)进行筛选,以对抗已报道的BC的多种表观遗传靶点(HDAC1-2, 4-8和HAT),以检查bps的药物可能性。结果:发现葡萄糖胺环、葡萄糖胺线性、葡萄糖醛酸线性、鼠李糖线性、葡萄糖醛酸环、半乳糖环、甘露糖、葡萄糖和木糖对导致BC的表观遗传靶点(HDAC1、HDAC2、HDAC4、HDAC5、HDAC6、HDAC7、HDAC8和HAT)具有一致的结合潜力。结论:这是首次报道针对这些表观遗传靶点的bps。这些研究有助于了解bps用于抗BC表观遗传靶点的潜在机制。这些结果可以通过实验进一步验证,以证实它们作为抑制表观遗传靶点(HDAC1-2、4-8和HAT)的潜力,这些靶点在BC中起作用。
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引用次数: 0
期刊
Journal of Receptors and Signal Transduction
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