Pub Date : 2017-10-01DOI: 10.1016/j.jaubas.2016.08.001
Sunday Aribo, Sunday J. Olusegun, Leonard J. Ibhadiyi, Akinlabi Oyetunji, Davies O. Folorunso
Tafel extrapolation method has been employed to determine the corrosion resistance of super austenitic stainless steel (UNS S31254) in a CO2-saturated acidizing oilfield environment. Green inhibitors (Tridax procumbens and Chromolaena odorata extracts) were employed for protection of the alloy in the environment. Over 90% inhibition efficiency was achieved at inhibition dosage of 100 ppm for one of the inhibitors. Results showed that both inhibitors are effective for protecting the alloy in the acidizing environment. The result of the adsorption isotherm showed that the adsorption of the extracts on the surface of UNS S31254 is a monolayer and consistent with the Langmuir isotherm.
{"title":"Green inhibitors for corrosion protection in acidizing oilfield environment","authors":"Sunday Aribo, Sunday J. Olusegun, Leonard J. Ibhadiyi, Akinlabi Oyetunji, Davies O. Folorunso","doi":"10.1016/j.jaubas.2016.08.001","DOIUrl":"10.1016/j.jaubas.2016.08.001","url":null,"abstract":"<div><p>Tafel extrapolation method has been employed to determine the corrosion resistance of super austenitic stainless steel (UNS S31254) in a CO<sub>2</sub>-saturated acidizing oilfield environment. Green inhibitors (<em>Tridax procumbens</em> and <em>Chromolaena odorata</em> extracts) were employed for protection of the alloy in the environment. Over 90% inhibition efficiency was achieved at inhibition dosage of 100<!--> <!-->ppm for one of the inhibitors. Results showed that both inhibitors are effective for protecting the alloy in the acidizing environment. The result of the adsorption isotherm showed that the adsorption of the extracts on the surface of UNS S31254 is a monolayer and consistent with the Langmuir isotherm.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"24 ","pages":"Pages 34-38"},"PeriodicalIF":0.0,"publicationDate":"2017-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2016.08.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77683606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-10-01DOI: 10.1016/j.jaubas.2017.04.002
Muazu Abubakar , Uday Basheer , Norhayati Ahmad
A dense and mesoporous ceramic from locally sourced Nigerian clay under fracture-strength test were produced and the reliability analysis of the fractured strength was conducted using a three-parameter Weibull probability distribution. The samples were prepared by addition of starch (0–20wt%), pressed at 60 MPa and fired at 1300 °C. The as-received Nigerian clay, dense and porous ceramic were characterized using XRD, XRF, TGA/DTA, PSD, multi-point BET and FESEM. The fracture strength of the samples (33 each) was determined using a three-point bending test. The fracture strength data were analyzed using three-parameter Weibull probability distribution. From the characterization results, a mullite ceramic formed at a sintering temperature of 1300 °C. The threshold strength for the three-parameter Weibull provides the strength below which the dense and the porous ceramic will not fail. The Weibull moduli of the ceramics at different starch compositions show that failure modes in these materials are not identical. The Weibull modulus increases with increase in percentage starch from 0% to 15%. However, the value decreases with 20% starch addition. Reliability analysis provides a detailed interpretation and assessment of the fracture strength of the porous ceramics.
{"title":"Mesoporosity, thermochemical and probabilistic failure analysis of fired locally sourced kaolinitic clay","authors":"Muazu Abubakar , Uday Basheer , Norhayati Ahmad","doi":"10.1016/j.jaubas.2017.04.002","DOIUrl":"10.1016/j.jaubas.2017.04.002","url":null,"abstract":"<div><p>A dense and mesoporous ceramic from locally sourced Nigerian clay under fracture-strength test were produced and the reliability analysis of the fractured strength was conducted using a three-parameter Weibull probability distribution. The samples were prepared by addition of starch (0–20wt%), pressed at 60<!--> <!-->MPa and fired at 1300<!--> <!-->°C. The as-received Nigerian clay, dense and porous ceramic were characterized using XRD, XRF, TGA/DTA, PSD, multi-point BET and FESEM. The fracture strength of the samples (33 each) was determined using a three-point bending test. The fracture strength data were analyzed using three-parameter Weibull probability distribution. From the characterization results, a mullite ceramic formed at a sintering temperature of 1300<!--> <!-->°C. The threshold strength for the three-parameter Weibull provides the strength below which the dense and the porous ceramic will not fail. The Weibull moduli of the ceramics at different starch compositions show that failure modes in these materials are not identical. The Weibull modulus increases with increase in percentage starch from 0% to 15%. However, the value decreases with 20% starch addition. Reliability analysis provides a detailed interpretation and assessment of the fracture strength of the porous ceramics.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"24 ","pages":"Pages 81-88"},"PeriodicalIF":0.0,"publicationDate":"2017-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2017.04.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"75414193","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-06-01DOI: 10.1016/j.jaubas.2016.04.001
M. Devakar, K. Ramesh, Sagar Chouhan, Ankush Raje
In this paper, we have studied the flow of incompressible fluids in a straight square duct through the porous medium. The couple stress fluid model and Jeffrey fluid model are considered separately to study the flow properties. The governing partial differential equations have been solved numerically using finite difference method in each case. In both the cases, the variation of different flow parameters on the fluid velocity is illustrated graphically and the numerical results for the volume flow rate have been presented through tables. It is observed that, the velocity and volume flow rate decrease with an increase in couple stress parameter and porosity parameter, while the velocity and volume flow rate increase with an increase in Jeffrey parameter and pressure gradient.
{"title":"Fully developed flow of non-Newtonian fluids in a straight uniform square duct through porous medium","authors":"M. Devakar, K. Ramesh, Sagar Chouhan, Ankush Raje","doi":"10.1016/j.jaubas.2016.04.001","DOIUrl":"10.1016/j.jaubas.2016.04.001","url":null,"abstract":"<div><p>In this paper, we have studied the flow of incompressible fluids in a straight square duct through the porous medium. The couple stress fluid model and Jeffrey fluid model are considered separately to study the flow properties. The governing partial differential equations have been solved numerically using finite difference method in each case. In both the cases, the variation of different flow parameters on the fluid velocity is illustrated graphically and the numerical results for the volume flow rate have been presented through tables. It is observed that, the velocity and volume flow rate decrease with an increase in couple stress parameter and porosity parameter, while the velocity and volume flow rate increase with an increase in Jeffrey parameter and pressure gradient.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"23 ","pages":"Pages 66-74"},"PeriodicalIF":0.0,"publicationDate":"2017-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2016.04.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73985900","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-06-01DOI: 10.1016/j.jaubas.2016.04.002
Rajesh H. Vekariya , Kinjal D. Patel , Dhanji P. Rajani , Smita D. Rajani , Hitesh D. Patel
A convenient, one-pot, multi-component protocol for the preparation of 2-(1-(2-oxo-2H-chromen-3-yl)ethylidene)hydrazinecarbothioamide derivatives has been achieved. Here, firstly we have reported the synthesis of 3-acetyl-2H-chromen-2-one using starch sulfuric acid and cellulose sulfuric acid as biodegradable catalysts. Subsequently, we also carried out the reaction of isothiocynates, hydrazine hydrate and 3-acetyl-2H-chromen-2-one in the presence of catalytic amount of glacial acetic acid in refluxing ethanol to afford corresponding 2-(1-(2-oxo-2H-chromen-3-yl)ethylidene)hydrazinecarbothioamide derivatives in high to excellent yields. All synthesized compounds were screened for antimicrobial activity. All compounds were found to show good to excellent activity against Escherichia coli MTCC 443.
{"title":"A one pot, three component synthesis of coumarin hybrid thiosemicarbazone derivatives and their antimicrobial evolution","authors":"Rajesh H. Vekariya , Kinjal D. Patel , Dhanji P. Rajani , Smita D. Rajani , Hitesh D. Patel","doi":"10.1016/j.jaubas.2016.04.002","DOIUrl":"10.1016/j.jaubas.2016.04.002","url":null,"abstract":"<div><p>A convenient, one-pot, multi-component protocol for the preparation of 2-(1-(2-oxo-2<em>H</em>-chromen-3-yl)ethylidene)hydrazinecarbothioamide derivatives has been achieved. Here, firstly we have reported the synthesis of 3-acetyl-2<em>H</em>-chromen-2-one using starch sulfuric acid and cellulose sulfuric acid as biodegradable catalysts. Subsequently, we also carried out the reaction of isothiocynates, hydrazine hydrate and 3-acetyl-2<em>H</em>-chromen-2-one in the presence of catalytic amount of glacial acetic acid in refluxing ethanol to afford corresponding 2-(1-(2-oxo-2<em>H</em>-chromen-3-yl)ethylidene)hydrazinecarbothioamide derivatives in high to excellent yields. All synthesized compounds were screened for antimicrobial activity. All compounds were found to show good to excellent activity against <em>Escherichia coli</em> MTCC 443.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"23 ","pages":"Pages 10-19"},"PeriodicalIF":0.0,"publicationDate":"2017-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2016.04.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72576572","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study involves the adsorption of Crystal Violet (CV) dye adsorbed from solution on the pyrophyllite’s surface. The batch technique was used under a variety of conditions to produce quantitative adsorption, namely amount of adsorbent, dye concentration, contact time, pH solution and temperature. The maximum adsorption capacity of Crystal Violet on pyrophyllite was 9.58 mg/g for 10 mg/L of CV concentration, pH = 6.8 at a temperature 20 °C and 1 g/L of adsorbent. This study of adsorption kinetics was carried out within framework of three models: intraparticle diffusion, pseudo-first order and pseudo-second order. The experimental isotherm data were analyzed using Langmuir and Freundlich models. Different thermodynamic parameters have shown spontaneous reaction with endothermic nature (The estimated value for ΔG was −7.64 kJ/mol at 293 K). Various techniques for characterizing the adsorbent were applied including X-ray diffraction (XRD), X-ray fluorescence spectroscopy (XRF), scanning electron microscopy (SEM) and transmission electron microscopy (TEM) coupled by energy dispersive X-ray spectroscopy (EDX). In addition, the regenerated adsorbents technique was reused several times; this demonstrated an economical aspect of using pyrophyllite which underlines the re-use importance considering the material capacity to regenerate.
{"title":"Assessment of adsorption kinetics for removal potential of Crystal Violet dye from aqueous solutions using Moroccan pyrophyllite","authors":"Youssef Miyah , Anissa Lahrichi , Meryem Idrissi , Saïd Boujraf , Hasnae Taouda , Farid Zerrouq","doi":"10.1016/j.jaubas.2016.06.001","DOIUrl":"10.1016/j.jaubas.2016.06.001","url":null,"abstract":"<div><p>This study involves the adsorption of Crystal Violet (CV) dye adsorbed from solution on the pyrophyllite’s surface. The batch technique was used under a variety of conditions to produce quantitative adsorption, namely amount of adsorbent, dye concentration, contact time, pH solution and temperature. The maximum adsorption capacity of Crystal Violet on pyrophyllite was 9.58<!--> <!-->mg/g for 10<!--> <!-->mg/L of CV concentration, pH<!--> <!-->=<!--> <!-->6.8 at a temperature 20<!--> <!-->°C and 1<!--> <!-->g/L of adsorbent. This study of adsorption kinetics was carried out within framework of three models: intraparticle diffusion, pseudo-first order and pseudo-second order. The experimental isotherm data were analyzed using Langmuir and Freundlich models. Different thermodynamic parameters have shown spontaneous reaction with endothermic nature (The estimated value for Δ<em>G</em> was −7.64<!--> <!-->kJ/mol at 293<!--> <!-->K). Various techniques for characterizing the adsorbent were applied including X-ray diffraction (XRD), X-ray fluorescence spectroscopy (XRF), scanning electron microscopy (SEM) and transmission electron microscopy (TEM) coupled by energy dispersive X-ray spectroscopy (EDX). In addition, the regenerated adsorbents technique was reused several times; this demonstrated an economical aspect of using pyrophyllite which underlines the re-use importance considering the material capacity to regenerate.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"23 ","pages":"Pages 20-28"},"PeriodicalIF":0.0,"publicationDate":"2017-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2016.06.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73803398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-06-01DOI: 10.1016/j.jaubas.2016.03.001
Vikas Jayasree, R.V. Siva Balan
This paper proposes to evaluate the adaptability risk in money laundering using Bitmap Index-based Decision Tree (BIDT) technique. Initially, the Bitmap Index-based Decision Tree learning is used to induce the knowledge tree which helps to determine a company’s money laundering risk and improve scalability. A bitmap index in BIDT is used to effectively access large banking databases. In a BIDT bitmap index, account in a table is numbered in sequence with each key value, account number and a bitmap (array of bytes) used instead of a list of row ids. Subsequently, BIDT algorithm uses the “select” query performance to apply count and bit-wise logical operations on AND. Query result coincides exactly to build a decision tree and more precisely to evaluate the adaptability risk in the money laundering operation. For the root node, the main account of the decision tree, the population frequencies are obtained by simply counting the total number of “1” in the bitmaps constructed on the attribute to predict money laundering and evaluate the risk factor rate. The experiment is conducted on factors such as regulatory risk rate, false positive rate, and risk identification time.
{"title":"Money laundering regulatory risk evaluation using Bitmap Index-based Decision Tree","authors":"Vikas Jayasree, R.V. Siva Balan","doi":"10.1016/j.jaubas.2016.03.001","DOIUrl":"10.1016/j.jaubas.2016.03.001","url":null,"abstract":"<div><p>This paper proposes to evaluate the adaptability risk in money laundering using Bitmap Index-based Decision Tree (BIDT) technique. Initially, the Bitmap Index-based Decision Tree learning is used to induce the knowledge tree which helps to determine a company’s money laundering risk and improve scalability. A bitmap index in BIDT is used to effectively access large banking databases. In a BIDT bitmap index, account in a table is numbered in sequence with each key value, account number and a bitmap (array of bytes) used instead of a list of row ids. Subsequently, BIDT algorithm uses the “select” query performance to apply count and bit-wise logical operations on AND. Query result coincides exactly to build a decision tree and more precisely to evaluate the adaptability risk in the money laundering operation. For the root node, the main account of the decision tree, the population frequencies are obtained by simply counting the total number of “1” in the bitmaps constructed on the attribute to predict money laundering and evaluate the risk factor rate. The experiment is conducted on factors such as regulatory risk rate, false positive rate, and risk identification time.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"23 ","pages":"Pages 96-102"},"PeriodicalIF":0.0,"publicationDate":"2017-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2016.03.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88932297","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-06-01DOI: 10.1016/j.jaubas.2016.07.002
E.A. Moawed , M.A. El-ghamry , M.A. El-Hagrasy , M.F. El-Shahat
This paper describes a simple, rapid, inexpensive method for the preparation of a new biosorbent based on the modification of miswak fibers by NaOH (AT-Miswak-F). The synthesized AT-Miswak-F sorbent was utilized as an efficient sorbent for the extraction and preconcentration of iron group metal ions from various water samples. In this study, it was found that Fe(III), Co(II) and Ni(II) ions were completely extracted (100%) at pH range of 3–7 and flow rate of 0.3–2.0 mL min−1. Also, the sorption capacity of AT-Miswak-F for Fe(III), Co(II) and Ni(II) are 0.54, 0.24 and 0.15 mmol g−1, respectively. Equilibrium was best described by Freundlich isotherm model (R2 = 0.793) and the initial rate constants were 0.077, 0.054 and 0.035 mmol g−1 min−1, respectively. Under the optimized conditions, the method exhibited a detection limit of 1.4, 2.8 and 2.1 ng mL−1 for Fe(III), Co(II) and Ni(II) ions in water samples with relative standard deviations of 2.6% (n = 4). The method was successfully applied for the determination of Fe(III), Co(II) and Ni(II) ions in sea, ground and contaminated water samples.
本文介绍了一种简单、快速、廉价的以氢氧化钠(at - miswake - f)改性miswake纤维为原料制备新型生物吸附剂的方法。将合成的at - miswake - f吸附剂作为一种高效的吸附剂,用于各种水样中铁族金属离子的萃取和预富集。本研究发现,在pH为3-7,流速为0.3-2.0 mL min - 1的条件下,Fe(III), Co(II)和Ni(II)离子被完全提取(100%)。at - misak - f对Fe(III)、Co(II)和Ni(II)的吸附量分别为0.54、0.24和0.15 mmol g−1。Freundlich等温模型最适合描述反应平衡(R2 = 0.793),初始速率常数分别为0.077、0.054和0.035 mmol g−1 min−1。在优化条件下,该方法对水样中Fe(III)、Co(II)和Ni(II)离子的检出限分别为1.4、2.8和2.1 ng mL−1,相对标准偏差为2.6% (n = 4),可成功应用于海、地、污染水样中Fe(III)、Co(II)和Ni(II)离子的检测。
{"title":"Determination of iron, cobalt and nickel ions from aqueous media using the alkali modified miswak","authors":"E.A. Moawed , M.A. El-ghamry , M.A. El-Hagrasy , M.F. El-Shahat","doi":"10.1016/j.jaubas.2016.07.002","DOIUrl":"10.1016/j.jaubas.2016.07.002","url":null,"abstract":"<div><p>This paper describes a simple, rapid, inexpensive method for the preparation of a new biosorbent based on the modification of miswak fibers by NaOH (AT-Miswak-F). The synthesized AT-Miswak-F sorbent was utilized as an efficient sorbent for the extraction and preconcentration of iron group metal ions from various water samples. In this study, it was found that Fe(III), Co(II) and Ni(II) ions were completely extracted (100%) at pH range of 3–7 and flow rate of 0.3–2.0<!--> <!-->mL<!--> <!-->min<sup>−1</sup>. Also, the sorption capacity of AT-Miswak-F for Fe(III), Co(II) and Ni(II) are 0.54, 0.24 and 0.15<!--> <!-->mmol<!--> <!-->g<sup>−1</sup>, respectively. Equilibrium was best described by Freundlich isotherm model (<em>R</em><sup>2</sup> <!-->=<!--> <!-->0.793) and the initial rate constants were 0.077, 0.054 and 0.035<!--> <!-->mmol<!--> <!-->g<sup>−1</sup> <!-->min<sup>−1</sup>, respectively. Under the optimized conditions, the method exhibited a detection limit of 1.4, 2.8 and 2.1<!--> <!-->ng<!--> <!-->mL<sup>−1</sup> for Fe(III), Co(II) and Ni(II) ions in water samples with relative standard deviations of 2.6% (<em>n</em> <!-->=<!--> <!-->4). The method was successfully applied for the determination of Fe(III), Co(II) and Ni(II) ions in sea, ground and contaminated water samples.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"23 ","pages":"Pages 43-51"},"PeriodicalIF":0.0,"publicationDate":"2017-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2016.07.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72630719","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Systematic Evolution of Ligands by EXponential enrichment (SELEX) is the method to select the specific aptamer against a wide range of targets. For this process, the initial library usually has a length of random sequences from ∼25 and it reaches over 100 bases. The lengthy sequences have disadvantages such as difficult to prepare, less stable and expensive. It is wise to prefer shorter version of aptamer for a wide range of applications including drug delivery process. It is a common practice to shorten the full-length aptamer by mapping analyses and it is tedious. Here, we used a crawling method to shorten the aptamer by different sequential deletion of bases from both 5′ and 3′ ends, assisted by Mfold web server application. Two different kinds of aptamer with varied lengths (randomized region of 30 and 74 bases) were desired for this study, generated against Influenza A/Panama/2007/1999 (H3N2) and gD protein of Herpes Simplex Virus-1. It was found that shortening the aptamer length by crawling pattern is possible with the assistance of Mfold web server application. The obtained results resemble the shortened aptamer derived by mapping analyses. The proposed strategy is recommended to predict the shorter aptamer without involving any wet experimental section.
指数富集配体的系统进化(SELEX)是一种针对广泛靶标选择特定适配体的方法。在这个过程中,初始文库的随机序列长度通常在~ 25之间,达到100多个碱基。冗长的序列具有制备困难、稳定性差和价格昂贵等缺点。对于包括给药过程在内的广泛应用而言,选择较短版本的适体是明智的。通过映射分析来缩短全长适配体是一种常见的做法,这是乏味的。在Mfold web server应用程序的辅助下,我们采用爬行法从5 '端和3 '端不同顺序地删除碱基来缩短适配体。本研究需要两种不同长度的适体(30和74个碱基的随机区域),分别针对甲型流感/巴拿马/2007/1999 (H3N2)和单纯疱疹病毒-1的gD蛋白产生。发现在Mfold web服务器应用程序的帮助下,通过爬行模式缩短适配体长度是可能的。所得结果与通过图谱分析得到的缩短的适体相似。所提出的策略被推荐用于预测较短的适体,而不涉及任何湿实验切片。
{"title":"Shortening full-length aptamer by crawling base deletion – Assisted by Mfold web server application","authors":"Subash C.B. Gopinath , Thangavel Lakshmipriya , M.K. Md Arshad , C.H. Voon , Tijjani Adam , Uda Hashim , Harbant Singh , Suresh V. Chinni","doi":"10.1016/j.jaubas.2016.07.001","DOIUrl":"10.1016/j.jaubas.2016.07.001","url":null,"abstract":"<div><p>Systematic Evolution of Ligands by EXponential enrichment (SELEX) is the method to select the specific aptamer against a wide range of targets. For this process, the initial library usually has a length of random sequences from ∼25 and it reaches over 100 bases. The lengthy sequences have disadvantages such as difficult to prepare, less stable and expensive. It is wise to prefer shorter version of aptamer for a wide range of applications including drug delivery process. It is a common practice to shorten the full-length aptamer by mapping analyses and it is tedious. Here, we used a crawling method to shorten the aptamer by different sequential deletion of bases from both 5′ and 3′ ends, assisted by Mfold web server application. Two different kinds of aptamer with varied lengths (randomized region of 30 and 74 bases) were desired for this study, generated against Influenza A/Panama/2007/1999 (H3N2) and gD protein of Herpes Simplex Virus-1. It was found that shortening the aptamer length by crawling pattern is possible with the assistance of Mfold web server application. The obtained results resemble the shortened aptamer derived by mapping analyses. The proposed strategy is recommended to predict the shorter aptamer without involving any wet experimental section.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"23 ","pages":"Pages 37-42"},"PeriodicalIF":0.0,"publicationDate":"2017-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2016.07.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90809931","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-06-01DOI: 10.1016/j.jaubas.2016.05.004
B. Mahanthesh , B.J. Gireesha , Rama Subba Reddy Gorla
The purpose of this study is to investigate the unsteady magnetohydrodynamic three-dimensional flow induced by a stretching surface. An incompressible electrically conducting Eyring-Powell fluid fills the convectively heated stretching surface in the presence of nanoparticles. The effects of thermal radiation, viscous dissipation and Joule heating are accounted in heat transfer equation. The model used for the nanofluid includes the effects of Brownian motion and thermophoresis. The highly nonlinear partial differential equations are reduced to ordinary differential equations with the help of similarity method. The reduced complicated two-point boundary value problem is treated numerically using Runge–Kutta–Fehlberg 45 method with shooting technique. A comparison of the obtained numerical results with existing results in a limiting sense is also presented. At the end, the effects of influential parameters on velocity, temperature and nanoparticles concentration fields are also discussed comprehensively. Further, the physical quantities of engineering interest such as the Nusselt number and Sherwood number are also calculated.
{"title":"Unsteady three-dimensional MHD flow of a nano Eyring-Powell fluid past a convectively heated stretching sheet in the presence of thermal radiation, viscous dissipation and Joule heating","authors":"B. Mahanthesh , B.J. Gireesha , Rama Subba Reddy Gorla","doi":"10.1016/j.jaubas.2016.05.004","DOIUrl":"10.1016/j.jaubas.2016.05.004","url":null,"abstract":"<div><p>The purpose of this study is to investigate the unsteady magnetohydrodynamic three-dimensional flow induced by a stretching surface. An incompressible electrically conducting Eyring-Powell fluid fills the convectively heated stretching surface in the presence of nanoparticles. The effects of thermal radiation, viscous dissipation and Joule heating are accounted in heat transfer equation. The model used for the nanofluid includes the effects of Brownian motion and thermophoresis. The highly nonlinear partial differential equations are reduced to ordinary differential equations with the help of similarity method. The reduced complicated two-point boundary value problem is treated numerically using Runge–Kutta–Fehlberg 45 method with shooting technique. A comparison of the obtained numerical results with existing results in a limiting sense is also presented. At the end, the effects of influential parameters on velocity, temperature and nanoparticles concentration fields are also discussed comprehensively. Further, the physical quantities of engineering interest such as the Nusselt number and Sherwood number are also calculated.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"23 ","pages":"Pages 75-84"},"PeriodicalIF":0.0,"publicationDate":"2017-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2016.05.004","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81853650","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-06-01DOI: 10.1016/j.jaubas.2016.05.002
M. Remili, D. Beldjerd
This paper is devoted to study the boundedness, ultimate boundedness, and the asymptotic stability of solutions for a certain class of third-order nonlinear differential equations using Lyapunov’s second method. Our results improve and form a complement to some earlier results in the literature.
{"title":"Stability and ultimate boundedness of solutions of some third order differential equations with delay","authors":"M. Remili, D. Beldjerd","doi":"10.1016/j.jaubas.2016.05.002","DOIUrl":"10.1016/j.jaubas.2016.05.002","url":null,"abstract":"<div><p>This paper is devoted to study the boundedness, ultimate boundedness, and the asymptotic stability of solutions for a certain class of third-order nonlinear differential equations using Lyapunov’s second method. Our results improve and form a complement to some earlier results in the literature.</p></div>","PeriodicalId":17232,"journal":{"name":"Journal of the Association of Arab Universities for Basic and Applied Sciences","volume":"23 ","pages":"Pages 90-95"},"PeriodicalIF":0.0,"publicationDate":"2017-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.jaubas.2016.05.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84497735","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}