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Extended-Spectrum Beta-Lactamases Genes in Klebsiella pneumoniae Isolates Obtained from Patients in Intensive Care Units 重症监护病房患者肺炎克雷伯菌分离株的广谱β -内酰胺酶基因
4区 医学 Q4 Medicine Pub Date : 2023-11-08 DOI: 10.5812/jjm-140497
Reyhaneh Taheri Tinjani, Milad Sabaei, Fatemeh Shamlou Mahmoudi, Soheil Rahmani Fard, Seyyed Khalil Shokouhi Mostafavi, Leyla Bahadorizadeh, Sara Minaeian
Background: Drug-resistant hospital-acquired infections (HAIs) are a growing concern in modern medicine throughout the world. Klebsiella pneumoniae is one of the most prominent causative agents of multidrug-resistant nosocomial infections. It is also widely recognized for having a high resistance level to many antibiotic classes, particularly beta-lactams. Carbapenemase-producing K. pneumoniae has been identified as a major global cause of HAIs with adverse clinical outcomes. Therefore, it is of the utmost importance to have an in-depth understanding of the antimicrobial resistance (AMR) genetic determinants of this bacterium to stop the spread of highly resistant K. pneumoniae in healthcare facilities and the resulting patient morbidity and mortality. Objectives: This study aimed to investigate the AMR pattern of K. pneumoniae isolates obtained from intensive care units (ICUs), with a focus on extended-spectrum beta-lactamases (ESBLs) genes blaCTX-M, blaGES, and blaIMP. Methods: A total of 105 K. pneumoniae isolates obtained from the sputum samples of ICU patients were identified and confirmed using standard microbiological tests and 16S rRNA polymerase chain reaction (PCR). The antibiotic susceptibility test was performed for all the isolates. The presence of ESBL genes was determined phenotypically and by PCR. Results: The highest level of resistance was observed against ceftazidime (100%), cefotaxime (99%), and imipenem (93.3%). Approximately 87.6% and 39% of the isolates were sensitive to colistin and gentamicin, respectively. Phenotypic ESBL production was observed in 16 isolates, and the prevalence of blaCTX-M was 86.7%. No blaGES and blaIMP genes were detected. Conclusions: Periodic investigation of AMR-mediating genes is essential due to the high prevalence of ESBL genes in HAIs. The presence of other ESBL genes needs to be investigated for a more accurate understanding of the AMR status of K. pneumoniae in healthcare settings.
背景:耐药医院获得性感染(HAIs)是全世界现代医学日益关注的问题。肺炎克雷伯菌是多药耐药医院感染的最主要病原体之一。它也被广泛认为对许多抗生素类具有高耐药性,特别是β -内酰胺类。产生碳青霉烯酶的肺炎克雷伯菌已被确定为具有不良临床结果的HAIs的主要全球原因。因此,深入了解这种细菌的抗微生物药物耐药性(AMR)遗传决定因素对于阻止高耐药性肺炎克雷伯菌在卫生保健设施中的传播以及由此导致的患者发病率和死亡率至关重要。目的:本研究旨在调查重症监护病房(icu)肺炎克雷伯菌分离株的AMR模式,重点关注广谱β -内酰胺酶(ESBLs)基因blaCTX-M、blaGES和blaIMP。方法:采用标准微生物学检测和16S rRNA聚合酶链反应(PCR)对从ICU患者痰液中分离的105株肺炎克雷伯菌进行鉴定和鉴定。对所有分离株进行药敏试验。通过表型和PCR检测ESBL基因的存在。结果:对头孢他啶(100%)、头孢噻肟(99%)和亚胺培南(93.3%)的耐药率最高。分别有87.6%和39%的分离株对粘菌素和庆大霉素敏感。在16株分离株中观察到表型ESBL产生,blaCTX-M的患病率为86.7%。未检出blaGES和blaIMP基因。结论:由于ESBL基因在HAIs中的高流行率,定期调查amr介导基因是必要的。为了更准确地了解医疗机构中肺炎克雷伯菌的AMR状况,需要调查其他ESBL基因的存在。
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引用次数: 0
A New Duplication in 668 to 672 Sites of UL54 Gene in Cytomegalovirus Ganciclovir Resistant Liver Transplanted Patients 巨细胞病毒更昔洛韦耐药肝移植患者UL54基因668 ~ 672位点的新重复
4区 医学 Q4 Medicine Pub Date : 2023-11-07 DOI: 10.5812/jjm-137970
Leila Jalilsani, Ramin Yaghobi, Bita Geramizadeh, Afsoon Afshari, Mohammadhossein Karimi
Background: In liver transplant recipients, human Cytomegalovirus (CMV) infection is a significant concern. Ganciclovir is the preferred medication for treating widespread CMV infections. In some cases, patients might require high doses of treatment for CMV infections that are resistant to ganciclovir, although liver transplant patients who have received extended ganciclovir and valganciclovir prophylaxis have reported infrequent cases of ganciclovir-resistant CMV infections. Mutations in the UL54 gene, responsible for encoding deoxyribonucleic acid (DNA) polymerase, can result in resistance. Objectives: In this study, the focus was on UL54 mutations and their association with ganciclovir resistance. Methods: In this study, 23 liver transplant recipients who were admitted to the transplant departments of Namazi and Abu Ali Sina hospitals within 2015 and 2017 were examined. Cytomegalovirus infection was then confirmed in them using the quantitative real-time polymerase chain reaction (PCR) method. The UL54 mutations were found after electrophoresis using the nested PCR method, and the PCR products were subsequently sequenced using the Sanger method. Sequence analysis and locating of UL54 mutations were performed using Finch software (version 1.4.0). Results: After sequencing 52 samples from 23 patients, 25 mutations in the UL54 gene were identified in 9 patients who were CMV-infected, occurring at a median of 32 days after transplant. These mutations, including S655L (10/9, 40%), N685S (8/9, 32%), F669L (4/9, 16%), A688V (2/9, 8%), and the novel AK124703.1: p.V668-G672dup (1/9, 4%), were detected in 9 liver transplant recipients over a median period of 2 years in the UL54 gene. Furthermore, a phylogenetic analysis was conducted to investigate the origins of these mutations in CMV isolated from the Iranian population. Conclusions: Considering that treatment with the drug ganciclovir has led to resistance mutations, particularly the new AK124703.1:p.V668-G672dup mutation, and inefficiency in treatment, it is necessary to determine drug-resistant CMV strains and closely monitor these patients. This includes determining viral load, assessing response to treatment, and identifying non-response at regular intervals until the viral load is completely eradicated in order to ensure the effectiveness of the treatment.
背景:在肝移植受者中,人巨细胞病毒(CMV)感染是一个值得关注的问题。更昔洛韦是治疗广泛的巨细胞病毒感染的首选药物。在某些情况下,患者可能需要对更昔洛韦耐药的巨细胞病毒感染进行高剂量治疗,尽管肝移植患者接受了更昔洛韦和缬更昔洛韦的长期预防治疗,但报告了更昔洛韦耐药巨细胞病毒感染的罕见病例。负责编码脱氧核糖核酸(DNA)聚合酶的UL54基因的突变可导致耐药性。目的:本研究的重点是UL54突变及其与更昔洛韦耐药性的关系。方法:本研究对2015年至2017年在Namazi和Abu Ali Sina医院移植科住院的23例肝移植受者进行调查。采用实时荧光定量聚合酶链反应(PCR)法检测巨细胞病毒感染。用巢式PCR法电泳发现UL54突变,PCR产物用Sanger法测序。使用Finch软件(版本1.4.0)进行序列分析和定位UL54突变。结果:在对来自23例患者的52个样本进行测序后,在9例cmv感染患者中发现了25个UL54基因突变,这些突变发生在移植后32天。这些突变包括S655L(10/9, 40%)、N685S(8/9, 32%)、F669L(4/9, 16%)、A688V(2/9, 8%)和新型AK124703.1: p.V668-G672dup(1/9, 4%),在UL54基因中位时间为2年的9例肝移植受者中检测到。此外,还进行了系统发育分析,以调查从伊朗人群中分离的巨细胞病毒中这些突变的起源。结论:考虑到更昔洛韦治疗已导致耐药突变,特别是新的AK124703.1:p。V668-G672dup突变,治疗效率低下,有必要确定耐药CMV菌株并密切监测这些患者。这包括确定病毒载量,评估对治疗的反应,并定期识别无反应,直到病毒载量完全根除,以确保治疗的有效性。
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引用次数: 0
Assessment of Salivary Glands as Reservoirs of SARS-CoV-2 and the Contagiousness of Saliva in Asymptomatic COVID-19 Patients: Is Delta Variant More Contagious? 无症状COVID-19患者唾液腺作为SARS-CoV-2储存库和唾液传染性的评估:Delta变体更具传染性吗?
4区 医学 Q4 Medicine Pub Date : 2023-11-06 DOI: 10.5812/jjm-139773
Kazem Savojbolaghchi Khiabani, Niloofar Neisi, Shahrokh Raiesian, Houman Sina, Mohammad Hosein Amirzade-Iranaq
Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection transmits when aerosols or droplets containing the virus are inhaled or come directly into contact, mainly in close contact with an infected person. Objectives: This study aimed to evaluate the role of the salivary glands in the secretion of SARS-CoV-2-infected saliva and determine the contagiousness of saliva in asymptomatic coronavirus disease 2019 (COVID-19) patients. Methods: In this cross-sectional analytical study between March 2021 and March 2022, 85 asymptomatic COVID-19 individuals with positive nasopharyngeal/oropharyngeal swabs were recruited. The SARS-CoV-2 cycle threshold (Ct) value was investigated in concomitant nasopharyngeal swabs (NPS), saliva, and pure saliva (collected directly from the salivary duct opening) using Real Time-PCR assay. Statistical analysis was performed using SPSS software (version 23), and a p-value of < 0.05 was considered significant. Results: The saliva Ct-value was the lowest (the highest viral load) for Delta (29.82 ± 4.66), Omicron (32.75 ± 4.82), and Alpha (36.83 ± 4.8) variants, respectively. Delta-infected saliva and pure saliva revealed the strongest correlation (correlation coefficient = 0.971, P < 0.001). Saliva Ct-value was significantly lower in Delta- (P < 0.001) and Omicron- (P = 0.012) infected patients than in Alpha-infected patients. The pure saliva Ct-value was significantly lower (P = 0.014) in Delta samples (30.13 ± 4.51). Asymptomatic Alpha- and Omicron-infected patients revealed significantly lower NPS Ct-value (30.52 ± 4.02 and 29.44 ± 3.34) than the saliva (36.83 ± 4.8 and 32.75 ± 4.82). Conclusions: The major salivary glands secrete SARS-CoV-2-infected saliva in nearly all Delta-infected and most Omicron-infected asymptomatic individuals. Although the transmission process is complex, saliva droplets and aerosols seem to have a higher contagiousness potential in individuals infected with the Delta variant.
背景:严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)感染通过吸入含有该病毒的气溶胶或飞沫或直接接触(主要是与感染者密切接触)传播。目的:本研究旨在评估无症状冠状病毒病2019 (COVID-19)患者唾液腺在感染sars - cov -2的唾液分泌中的作用,并确定唾液的传染性。方法:在2021年3月至2022年3月的横断面分析研究中,招募了85例无症状的COVID-19鼻咽/口咽拭子阳性个体。采用Real - Time-PCR检测同时使用鼻咽拭子(NPS)、唾液和纯唾液(直接从唾液管开口采集)的SARS-CoV-2周期阈值(Ct)。采用SPSS软件(version 23)进行统计分析,p值为<0.05为显著性。结果:δ型(29.82±4.66)、Omicron型(32.75±4.82)和α型(36.83±4.8)的唾液ct值最低(病毒载量最高)。δ感染唾液与纯唾液相关性最强(相关系数= 0.971,P <0.001)。唾液ct值显著低于Delta- (P <0.001)和Omicron- (P = 0.012)感染患者比α -感染患者多。Delta样品的纯唾液ct值(30.13±4.51)显著低于前者(P = 0.014)。无症状Alpha-和omicron -感染患者NPS ct值(30.52±4.02和29.44±3.34)明显低于唾液(36.83±4.8和32.75±4.82)。结论:几乎所有delta感染者和大多数omicron感染者的主要唾液腺分泌sars - cov -2感染的唾液。虽然传播过程复杂,但唾液滴和气溶胶似乎在感染Delta变体的个体中具有更高的传染潜力。
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引用次数: 0
Mutation Interest in the Receptor-Binding Domain of Spike Protein of Severe Acute Respiratory Syndrome Coronavirus 2 in the Northwest of Iran 伊朗西北部地区严重急性呼吸综合征冠状病毒2型刺突蛋白受体结合域的突变兴趣
4区 医学 Q4 Medicine Pub Date : 2023-11-06 DOI: 10.5812/jjm-137863
Chiman Karami, Vahid Asghariazar, Yasamin Pahlavan, Kamyar Mazloum Jalali, Ahmad Tajehmiri, Mohammad GhorbaniVanan, Elham Safarzadeh
Background: The spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been undergoing variation. Most of the variants cause no concern for human health. Some others have had worse outcomes in terms of transmissibility, vaccination resistance, and, generally, the survival of patients infected with SARS-CoV-2. Objectives: This study investigated the mutation of interest in the receptor-binding domain (RBD) of SARS-CoV-2. Methods: Ribonucleic acid (RNA) was extracted from 40 swap samples. Next, the polymerase chain reaction (PCR) assay was carried out to detect the RBD. Investigation of SARS-COV-2 RBD was performed completely by phylogenetic and tree alignment. The multiple sequence alignment (MSA) of the biological sequence of RBD was created by BioEdit, Snap Gene, and MEGA software and was then compared to sequences of different variants of SARS-COV-2 in the GenBank (National Center for Biotechnology Information). The Influenza Surveillance and Response System (GSAID) was used to detect mutations in the RBD sequence. Results: Multiple sequence alignment (MSA) RBD domain showed that the RBD domain sequence obtained from the Iranian patients' highest identity by severe acute respiratory syndrome coronavirus 2 isolate MZ907347. Several mutations of interest, including A475V, L452R, V483A, and F490L, were detected in the RBD region. However, the dN/dS analysis detected positive selection in RBD regions. Conclusions: Amino acid changes in the surface protein can significantly alter the viral function and/or interactions with neutralizing antibodies. Most of the nucleotide changes in the spike gene reduce infectivity. The V503W and P521Q mutations reduce infectivity, the A522Q mutation increases sensitivity to neutralizing antibodies, and the H519T mutation decreases susceptibility to convalescent sera.
背景:严重急性呼吸综合征冠状病毒2型(SARS-CoV-2)刺突蛋白发生变异。大多数变异对人体健康没有影响。其他一些在传播性、疫苗耐药性以及感染SARS-CoV-2的患者的总体存活率方面的结果更差。目的:研究SARS-CoV-2受体结合域(receptor-binding domain, RBD)的突变。方法:从40份交换样品中提取核糖核酸(RNA)。接下来,采用聚合酶链反应(PCR)检测RBD。SARS-COV-2 RBD的调查完全通过系统发育和树比对进行。RBD生物序列的多序列比对(MSA)由BioEdit、Snap Gene和MEGA软件创建,然后与GenBank (National Center for Biotechnology Information)中SARS-COV-2不同变体的序列进行比较。流感监测和反应系统(GSAID)用于检测RBD序列的突变。结果:多序列比对(MSA)显示,严重急性呼吸综合征冠状病毒2型分离物MZ907347从伊朗患者获得的RBD结构域序列最高。在RBD区域检测到几个感兴趣的突变,包括A475V、L452R、V483A和F490L。然而,dN/dS分析在RBD区域检测到阳性选择。结论:表面蛋白氨基酸的改变可以显著改变病毒的功能和/或与中和抗体的相互作用。刺突基因的大部分核苷酸变化都降低了传染性。V503W和P521Q突变降低传染性,A522Q突变增加对中和抗体的敏感性,H519T突变降低对恢复期血清的敏感性。
{"title":"Mutation Interest in the Receptor-Binding Domain of Spike Protein of Severe Acute Respiratory Syndrome Coronavirus 2 in the Northwest of Iran","authors":"Chiman Karami, Vahid Asghariazar, Yasamin Pahlavan, Kamyar Mazloum Jalali, Ahmad Tajehmiri, Mohammad GhorbaniVanan, Elham Safarzadeh","doi":"10.5812/jjm-137863","DOIUrl":"https://doi.org/10.5812/jjm-137863","url":null,"abstract":"Background: The spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been undergoing variation. Most of the variants cause no concern for human health. Some others have had worse outcomes in terms of transmissibility, vaccination resistance, and, generally, the survival of patients infected with SARS-CoV-2. Objectives: This study investigated the mutation of interest in the receptor-binding domain (RBD) of SARS-CoV-2. Methods: Ribonucleic acid (RNA) was extracted from 40 swap samples. Next, the polymerase chain reaction (PCR) assay was carried out to detect the RBD. Investigation of SARS-COV-2 RBD was performed completely by phylogenetic and tree alignment. The multiple sequence alignment (MSA) of the biological sequence of RBD was created by BioEdit, Snap Gene, and MEGA software and was then compared to sequences of different variants of SARS-COV-2 in the GenBank (National Center for Biotechnology Information). The Influenza Surveillance and Response System (GSAID) was used to detect mutations in the RBD sequence. Results: Multiple sequence alignment (MSA) RBD domain showed that the RBD domain sequence obtained from the Iranian patients' highest identity by severe acute respiratory syndrome coronavirus 2 isolate MZ907347. Several mutations of interest, including A475V, L452R, V483A, and F490L, were detected in the RBD region. However, the dN/dS analysis detected positive selection in RBD regions. Conclusions: Amino acid changes in the surface protein can significantly alter the viral function and/or interactions with neutralizing antibodies. Most of the nucleotide changes in the spike gene reduce infectivity. The V503W and P521Q mutations reduce infectivity, the A522Q mutation increases sensitivity to neutralizing antibodies, and the H519T mutation decreases susceptibility to convalescent sera.","PeriodicalId":17803,"journal":{"name":"Jundishapur Journal of Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135634616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Impact of Bacterial Co-Infection on Hospitalized Children with Human Rhinovirus and Human Metapneumovirus Infections: A Retrospective Analytical Cross-Sectional Study 细菌合并感染对人鼻病毒和人偏肺病毒感染住院儿童的影响:回顾性分析横断面研究
4区 医学 Q4 Medicine Pub Date : 2023-10-30 DOI: 10.5812/jjm-139106
Qing Wan, Ya-wei Li, Ying Cheng, Hongbo Hu
Background: Human rhinovirus (HRV) and human metapneumovirus (hMPV) are common viral causes of pediatric respiratory tract infections. Bacterial co-infections frequently complicate HRV and hMPV illnesses in children, but the interactions between viral and bacterial pathogens and their impacts on disease severity are not well understood. Objectives: The present research aimed to analyze and compare the clinical features of HRV and hMPV mono-infections in hospitalized children and to assess the impact of bacterial co-infection on the disease severity of HRV and hMPV infections. Methods: The present retrospective analytical cross-sectional study was conducted to compare the clinical features between HRV and hMPV mono-infections and HRV and hMPV with bacterial co-infections in hospitalized children aged 14 years or younger. Results: Between January and December 2022, we investigated 1,978 children hospitalized with HRV infection, of which 1,529 had HRV mono-infection and 1,117 hospitalized with hMPV infection, among whom 910 had hMPV mono-infection. Compared to HRV, hMPV mono-infection exhibited more pronounced symptoms of fever, cough, and rales in most age groups, while HRV showed more wheezing. Except in patients ≥ 6 years old, hMPV was more associated with pneumonia and longer hospitalizations. In contrast to HRV mono-infections, children with bacterial co-infections had a higher proportion of coughs (P < 0.001), pneumonia (P < 0.001), pediatric intensive care unit (PICU) admissions (P < 0.001), and longer hospitalizations (P = 0.003). Demographic characteristics, clinical presentation, diagnosis, and treatments showed no significant differences between patients with hMPV mono-infection and co-infection. Conclusions: Among hospitalized children, hMPV mono-infection resulted in more severe respiratory illnesses compared to HRV mono-infection. Bacterial co-infections exacerbated disease severity in HRV infections.
背景:人鼻病毒(HRV)和人偏肺病毒(hMPV)是引起小儿呼吸道感染的常见病毒。细菌合并感染经常使儿童HRV和hMPV疾病复杂化,但病毒和细菌病原体之间的相互作用及其对疾病严重程度的影响尚不清楚。目的:本研究旨在分析和比较住院儿童HRV和hMPV单感染的临床特征,并评估细菌共感染对HRV和hMPV感染病情严重程度的影响。方法:回顾性分析横断面研究,比较14岁及以下住院儿童HRV和hMPV单一感染及HRV和hMPV合并细菌感染的临床特点。结果:2022年1 - 12月,我们调查了1978例HRV感染住院儿童,其中1529例为HRV感染,1117例为hMPV感染,其中910例为hMPV感染。与HRV相比,hMPV单一感染在大多数年龄组中表现出更明显的发烧、咳嗽和啰音症状,而HRV则表现出更多的喘息。除6岁以上的患者外,hMPV与肺炎和住院时间更长相关。与单纯HRV感染相比,合并细菌感染的儿童咳嗽的比例更高(P <0.001),肺炎(P <0.001),儿科重症监护病房(PICU)入院率(P <0.001),住院时间更长(P = 0.003)。人口统计学特征、临床表现、诊断和治疗在hMPV单一感染和合并感染患者之间无显著差异。结论:在住院儿童中,单hMPV感染比单HRV感染导致更严重的呼吸道疾病。细菌合并感染加重了HRV感染的疾病严重程度。
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引用次数: 0
A Small Regulatory RNA, Rli82, Is Involved in the Motility and Pathogenicity of Listeria monocytogenes 小调控 RNA Rli82 参与了单核细胞增生李斯特菌的运动性和致病性过程
IF 0.6 4区 医学 Q4 Medicine Pub Date : 2023-10-29 DOI: 10.5812/jjm-139707
Chunhui Ji, Nengxiu Li, Jian Jiao, Yaoqiang Sun, Yufei Zuo, Xin Huang, Xiaoxing Huang, Zhiyuan Li, Yaling Li, Qingwen Leng, Xuepeng Cai, Q. Meng, Jun Qiao
Background: Listeria monocytogenes (LM) is a facultative intracellular pathogen that causes food-borne infections in humans and animals. To invade and multiply within host cells, LM utilizes various strategies to precisely modulate its gene expression and to adapt to the in vivo environment. Objectives: To investigate the regulatory roles of Rli82 sRNA in the motility and pathogenicity of LM EGD-e. Methods: The Rli82 gene knock-out mutant strain, LM-ΔRli82, and the complementation strain, LM-ΔRli82/Rli82, were constructed using homologous recombination technology, and their motility and virulence, respectively, were determined. Moreover, the potential target mRNA regulated by Rli82 was predicted using TargetRNA2 software, and then the interaction between the target mRNA and Rli82 was verified by the two-plasmid reporter system. Results: The results showed that the motility of LM-ΔRli82 was significantly increased at 25°C, facilitated by the production of more flagella than LM EGD-e and LM-ΔRli82/Rli82. Furthermore, LD50 in LM-ΔRli82-infected mice was significantly increased as compared to LM EGD-e and LM-ΔRli82/Rli82, suggesting that the virulence of LM was weakened when the Rli82 gene was deleted. In addition, the mRNA level of flaA was not significantly elevated, but flaA protein was significantly higher in LM-ΔRli82 than in LM EGD-e and LM-ΔRli82/Rli82, suggesting that Rli82 might modulate the translation of flaA mRNA at the post-transcriptional level. Conclusions: Taken together, our findings for the first time revealed that Rli82 sRNA might be involved in the modulation of the expression of flaA protein, thereby influencing the mobility and pathogenicity of LM.
背景:单核细胞增生李斯特菌(LM)是一种细胞内兼性病原体,可导致人类和动物的食源性感染。为了在宿主细胞内入侵和繁殖,李斯特菌利用各种策略精确调节其基因表达并适应体内环境。研究目的研究 Rli82 sRNA 在 LM EGD-e 的运动性和致病性中的调控作用。方法:利用同源重组技术构建 Rli82 基因敲除突变株 LM-ΔRli82 和互补株 LM-ΔRli82/Rli82,并分别测定其运动性和致病性。此外,利用TargetRNA2软件预测了Rli82调控的潜在靶mRNA,并通过双质粒报告系统验证了靶mRNA与Rli82之间的相互作用。结果表明结果表明,与 LM EGD-e 和 LM-ΔRli82/Rli82 相比,LM-ΔRli82 在 25°C 时的运动能力明显增强,能产生更多的鞭毛。此外,与 LM EGD-e 和 LM-ΔRli82/Rli82 相比,LM-ΔRli82 感染小鼠的半数致死剂量(LD50)明显增加,这表明删除 Rli82 基因后 LM 的毒力减弱。此外,与 LM EGD-e 和 LM-ΔRli82/Rli82 相比,LM-ΔRli82 的 flaA mRNA 水平没有显著升高,但 flaA 蛋白水平显著升高,这表明 Rli82 可能在转录后水平上调节了 flaA mRNA 的翻译。结论综上所述,我们的研究结果首次揭示了 Rli82 sRNA 可能参与调控 flaA 蛋白的表达,从而影响 LM 的移动性和致病性。
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引用次数: 0
Molecular Identification of Candida Species Isolated from Onychomycosis with In Vitro Antifungal Susceptibility Profiles 甲癣念珠菌的分子鉴定及体外抗真菌敏感性分析
4区 医学 Q4 Medicine Pub Date : 2023-10-25 DOI: 10.5812/jjm-139906
Mohammad Hosein Afsarian, Zahra Sharafi
Background: Onychomycosis is one of the most common fungal infections. The most common etiological agents of onychomycosis in Iran are Candida species, especially fingernails. It is more common in women than men, particularly workers in occupations requiring them to submerge their hands or feet in water for prolonged periods. Objectives: The current study's main aim was to determine the abundance of candidal onychomycosis, identify the Candida species using molecular methods, and evaluate the in vitro antifungal susceptibility profiles. Methods: One hundred forty samples were obtained from patients suspected of onychomycosis, and 51 (36.4%) Candida strains were identified by PCR-RFLP. The in vitro susceptibility of four triazole (FLC, ITC, VRC, and POS) antifungal drug testing of 51 Candida species was performed using broth microdilution. Results: Direct microscopic examination by KOH 20% of 140 nail samples showed that 51 (36.4%) samples were positive in terms of fungal elements, with Candida parapsilosis complex being the most frequently isolated of patients, followed by C. albicans complex, C. glabrata, C. krusei, C. tropicalis, C. guilliermondii, C. famata, C. kefyr, and Candida species. All Candida species showed they were susceptible to four triazoles, except that five C. krusei were resistant to fluconazole. Only one C. glabrata isolates and one C. parapsilosis isolate were resistant to fluconazole. Conclusions: The growing trend towards the frequency of fingernail onychomycosis in housewives has been noticeable in the last decades in Iran. Therefore, accurate identification of Candida species and perform in vitro antifungal susceptibility testing can aid physicians in choosing an effective potential drug for treating onychomycosis patients.
背景:甲真菌病是最常见的真菌感染之一。伊朗甲癣最常见的病原是念珠菌,尤其是指甲。这在女性中比男性更常见,特别是那些需要长时间将手或脚浸入水中的职业的工人。目的:本研究的主要目的是确定念珠菌甲真菌病的丰度,利用分子方法鉴定念珠菌种类,并评估体外抗真菌敏感性。方法:从疑似甲癣患者采集标本140份,采用PCR-RFLP法鉴定念珠菌51株(36.4%)。采用微量肉汤稀释法对51种念珠菌进行了四种三唑(FLC、ITC、VRC和POS)的体外药敏试验。结果:140份指甲标本中,20%经KOH直接镜检,51份(36.4%)指甲标本真菌成分阳性,检出最多的是假丝酵母菌复合体,其次是白色念珠菌复合体、光秃念珠菌、克鲁塞念珠菌、热带念珠菌、吉列蒙地念珠菌、famata念珠菌、kefyr念珠菌。除5株克氏念珠菌对氟康唑耐药外,其余念珠菌均对4种三唑类药物敏感。仅有1株光秃弧菌和1株拟枯弧菌对氟康唑耐药。结论:近几十年来,伊朗家庭主妇指甲甲真菌病的发病率呈明显上升趋势。因此,准确鉴定念珠菌种类并进行体外抗真菌药敏试验可以帮助医生选择有效的潜在药物治疗甲癣患者。
{"title":"Molecular Identification of Candida Species Isolated from Onychomycosis with In Vitro Antifungal Susceptibility Profiles","authors":"Mohammad Hosein Afsarian, Zahra Sharafi","doi":"10.5812/jjm-139906","DOIUrl":"https://doi.org/10.5812/jjm-139906","url":null,"abstract":"Background: Onychomycosis is one of the most common fungal infections. The most common etiological agents of onychomycosis in Iran are Candida species, especially fingernails. It is more common in women than men, particularly workers in occupations requiring them to submerge their hands or feet in water for prolonged periods. Objectives: The current study's main aim was to determine the abundance of candidal onychomycosis, identify the Candida species using molecular methods, and evaluate the in vitro antifungal susceptibility profiles. Methods: One hundred forty samples were obtained from patients suspected of onychomycosis, and 51 (36.4%) Candida strains were identified by PCR-RFLP. The in vitro susceptibility of four triazole (FLC, ITC, VRC, and POS) antifungal drug testing of 51 Candida species was performed using broth microdilution. Results: Direct microscopic examination by KOH 20% of 140 nail samples showed that 51 (36.4%) samples were positive in terms of fungal elements, with Candida parapsilosis complex being the most frequently isolated of patients, followed by C. albicans complex, C. glabrata, C. krusei, C. tropicalis, C. guilliermondii, C. famata, C. kefyr, and Candida species. All Candida species showed they were susceptible to four triazoles, except that five C. krusei were resistant to fluconazole. Only one C. glabrata isolates and one C. parapsilosis isolate were resistant to fluconazole. Conclusions: The growing trend towards the frequency of fingernail onychomycosis in housewives has been noticeable in the last decades in Iran. Therefore, accurate identification of Candida species and perform in vitro antifungal susceptibility testing can aid physicians in choosing an effective potential drug for treating onychomycosis patients.","PeriodicalId":17803,"journal":{"name":"Jundishapur Journal of Microbiology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135219267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synergistic Peptide-Antibiotic Approach to Combat Multidrug-Resistant Acinetobacter baumannii 多肽-抗生素协同对抗多药耐药鲍曼不动杆菌
4区 医学 Q4 Medicine Pub Date : 2023-10-22 DOI: 10.5812/jjm-136712
Choon-Mee Kim, Seul-Bi Lee, Young-Jin Ko, Seong-Ho Kang, Geon Park, Sook-Jin Jang
Background: Antibacterial peptides have a broad antibacterial spectrum and are not affected by classical resistance mechanisms; therefore, they can be used in combination with classic antibiotics to treat multidrug-resistant Acinetobacter baumannii infections, making them an alternative for the development of new therapeutic strategies. Objectives: This study aimed to assess the effectiveness of combining amphiphilic peptides, specifically C12-prp and mastoparan, with antibiotics in combating A. baumannii clinical isolates. Methods: We investigated combinations that inhibited the growth of A. baumannii clinical isolates, consisting of 24 extensively drug-resistant (XDR) and 11 pan-drug-resistant (PDR) strains collected between January 2004 and December 2014 at Chosun University Hospital using a multiple combination bactericidal test (MCBT). A time-kill study was used to confirm the bactericidal activity and synergism of the four combinations selected via MCBT. Results: Four combinations (C12-prp-colistin, C12-prp-rifampicin, mastoparan-colistin, and mastoparan-rifampicin) showed 100% (24/24) synergy with XDR A. baumannii strains. However, in the case of the PDR strains, only two combinations, C12-prp-colistin and mastoparan-colistin, showed a 9.1% (1/11) synergy. Moreover, the mastoparan-colistin and mastoparan-rifampicin combinations showed 100% (24/24) bactericidal activity against the XDR A. baumannii strains, whereas the C12-prp-colistin and C12-prp-rifampicin combinations showed 91.7% (22/24) bactericidal activity. None of the combinations showed bactericidal activity against PDR strains. Conclusions: Our study highlighted the substantial synergistic antibacterial efficacy of C12-prp and mastoparan peptides when combined with colistin or rifampicin. Furthermore, this approach could be a promising alternative for developing new treatment strategies for XDR A. baumannii infections.
背景:抗菌肽抗菌谱广,不受经典耐药机制的影响;因此,它们可与经典抗生素联合用于治疗耐多药鲍曼不动杆菌感染,使其成为开发新治疗策略的替代方案。目的:本研究旨在评估两亲肽(特别是C12-prp和mastoparan)与抗生素联合治疗鲍曼不动杆菌临床分离株的有效性。方法:采用多重联合杀菌试验(MCBT)对2004年1月至2014年12月在朝鲜大学医院采集的24株广泛耐药(XDR)和11株泛耐药(PDR)鲍曼不雅杆菌临床分离株的生长抑制组合进行研究。通过时间杀伤试验确定了MCBT选择的四种组合的杀菌活性和协同作用。结果:4种组合(c12 -prp-粘菌素、c12 -prp-利福平、mastoparan-粘菌素、mastoparan-利福平)与XDR鲍曼杆菌的增效率为100%(24/24)。然而,在PDR菌株中,只有c12 -prp-粘菌素和mastoparan-粘菌素两种组合表现出9.1%(1/11)的协同作用。此外,乳突菌素-粘菌素和乳突菌素-利福平联合对XDR鲍曼尼杆菌的杀菌活性为100%(24/24),而c12 -prp-粘菌素和c12 -prp-利福平联合对XDR鲍曼尼杆菌的杀菌活性为91.7%(22/24)。所有组合均未显示出对PDR菌株的杀菌活性。结论:我们的研究强调了C12-prp和乳突蛋白肽与粘菌素或利福平联合使用时具有显著的协同抗菌效果。此外,这种方法可能是开发XDR鲍曼杆菌感染新治疗策略的一种有希望的替代方法。
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引用次数: 0
Quinolone Resistance in Biofilm-Forming Klebsiella pneumoniae-Related Catheter-Associated Urinary Tract Infections: A Neglected Problem 形成生物膜的肺炎克雷伯菌与导尿管相关尿路感染的喹诺酮耐药性:一个被忽视的问题
4区 医学 Q4 Medicine Pub Date : 2023-10-17 DOI: 10.5812/jjm-136170
Mahdi Dadashi Firouzjaei, Peyman Hendizadeh, Mehrdad Halaji, Sajad Yaghoubi, Mohammad Teimourian, Akramossadat Hosseini, Mehdi Rajabnia, Abazar Pournajaf
Background: Klebsiella pneumoniae is a bacterium that commonly causes urinary tract infections (UTIs) in hospital settings. The widespread and improper usage of quinolones has increased the resistance rates against these broad-spectrum antibiotics. Objectives: This study aimed to examine the connection between the ability to form biofilms and fluoroquinolone resistance in K. pneumoniae isolated from catheter-associated UTIs. Methods: A total of 110 nonduplicative K. pneumoniae-related catheter-associated UTIs were isolated from three large educational hospitals in Babol, north of Iran. The minimal inhibitory concentration (MIC) of ciprofloxacin was calculated for each detected isolate using the agar dilution procedure. Biofilm production was investigated by a 96-well flat-bottom microtiter plate. The prevalence of gyrA, parC, qnrA, qnrS, acc (6’)-Ib-cr, qepA, qnrB, oqxA, and oqxB genes was evaluated using polymerase chain reaction (PCR). Results: Overall, 28.2% of the strains were resistant to imipenem and considered carbapenem-resistant K. pneumoniae (CRKp). Ciprofloxacin resistance was observed in 66.4%. Moreover, 70% of the isolates produced biofilm. Biofilm production was significantly higher in ciprofloxacin-resistant compared to ciprofloxacin-susceptible strains (P-value < 0.05). Molecular distribution of resistance genes in the 68-fluoroquinolone resistance-Kp strains showed that the prevalence of gyrA, parC, qnrA, qnrS, acc (6’)-Ib-cr, qepA,, qnrB, oqxA, and oqxB genes was 39.7%, 42.6%, 5.9%, 54.4%, 69.1%, 94.1%, 41.2%, 69.1%, and 83.8%, respectively. Conclusions: Our study highlights the high prevalence of plasmid-mediated quinolone resistance genes in clinical samples of K. pneumoniae in the studied region, which is alarming given the possibility of the spread of these pathogens and the few treatments available for infections brought on by multidrug-resistant strains. Moreover, the study characterizes particular mutations in the parC and gyrA genes that cause quinolone resistance.
背景:肺炎克雷伯菌是一种细菌,通常导致尿路感染(uti)在医院设置。喹诺酮类药物的广泛和不当使用增加了对这些广谱抗生素的耐药率。目的:本研究旨在探讨从导管相关uti分离的肺炎克雷伯菌形成生物膜的能力与氟喹诺酮类药物耐药性之间的关系。方法:从伊朗北部巴博勒的三家大型教育医院分离出110例非重复肺炎克雷伯菌相关的导管相关尿路感染。使用琼脂稀释程序计算每个检测到的分离物的环丙沙星的最小抑制浓度(MIC)。采用96孔平板微滴板研究生物膜的生成。采用聚合酶链反应(PCR)检测gyrA、parC、qnrA、qnrS、acc(6’)-Ib-cr、qepA、qnrB、oqxA和oqxB基因的流行情况。结果:总体而言,28.2%的菌株对亚胺培南耐药,认为是碳青霉烯耐药肺炎克雷伯菌(CRKp)。66.4%的患者对环丙沙星耐药。此外,70%的分离菌产生生物膜。环丙沙星耐药菌株的生物膜产量显著高于环丙沙星敏感菌株(p值<0.05)。68株氟喹诺酮耐药kp菌株的耐药基因分子分布显示,gyrA、parC、qnrA、qnrS、acc(6’)-Ib-cr、qepA、qnrB、oqxA和oqxB基因的阳性率分别为39.7%、42.6%、5.9%、54.4%、69.1%、94.1%、41.2%、69.1%和83.8%。结论:我们的研究强调了研究地区肺炎克雷伯菌临床样本中质粒介导的喹诺酮类耐药基因的高流行率,考虑到这些病原体传播的可能性和对多重耐药菌株引起的感染的可用治疗方法很少,这是令人担忧的。此外,该研究还描述了导致喹诺酮类药物耐药性的parC和gyrA基因的特定突变。
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引用次数: 0
Identification of Etiological Agents of Pertussis-Like Syndrome in Children Younger Than 5 Years Old Hospitalized in Southwestern Iran 伊朗西南部5岁以下住院儿童百日咳样综合征病原学鉴定
4区 医学 Q4 Medicine Pub Date : 2023-10-16 DOI: 10.5812/jjm-130146
Ahmad Shamsizadeh, Roya Nikfar, Elham Bavarsadiankhah, Effat Abbasi-Montazeri, Niloofar Neisi, Maniya Arshadi
Background: Despite the global vaccination program, there are many new cases of pertussis in different societies annually. Objectives: This study aimed to investigate the prevalence of some microorganisms associated with pertussis-like syndrome and compare the clinical presentations between Bordetella pertussis and pertussis-like syndrome in children. Methods: Children younger than 5 years old suspected of pertussis-like syndrome were admitted to a hospital in Ahvaz, Iran, and examined from July 2018 to July 2019. Nasopharyngeal samples were evaluated using molecular methods. The studied microorganisms were the following: B. pertussis, B. parapertussis, Mycoplasma pneumoniae, Chlamydophila pneumoniae, adenovirus, respiratory syncytial virus, and parainfluenza virus type III. Results: Forty-five children were enrolled. B. pertussis was detected in 15 cases (33.3%), respiratory syncytial virus in 14 (31.1%), C. pneumoniae in 3 (6.7%), and parainfluenza virus type III in 3 (6.7%). The collected samples were negative in terms of M. pneumoniae, adenovirus, and B. parapertussis. In the case of paroxysmal cough, the clinical symptoms were significantly different between pertussis and pertussis-like groups. Conclusions: The results indicated that children with pertussis-like syndrome are commonly infected with B. pertussis and respiratory syncytial virus, so more attention should be paid to this issue. The study also demonstrated the importance of molecular diagnosis methods, along with diagnosis based on clinical symptoms, in children suspected of pertussis-like syndrome.
背景:尽管全球疫苗接种计划,每年仍有许多百日咳新病例出现在不同的社会。目的:本研究旨在调查与百日咳样综合征相关的一些微生物的流行情况,并比较百日咳博德泰菌和百日咳样综合征在儿童中的临床表现。方法:2018年7月至2019年7月,对伊朗阿瓦士一家医院收治的5岁以下疑似百日咳样综合征儿童进行检查。采用分子方法对鼻咽标本进行评价。研究的微生物有:百日咳、副百日咳、肺炎支原体、肺炎衣原体、腺病毒、呼吸道合胞病毒和副流感病毒III型。结果:45名儿童入组。百日咳15例(33.3%),呼吸道合胞病毒14例(31.1%),肺炎支原体3例(6.7%),副流感病毒3例(6.7%)。收集的样本在肺炎支原体、腺病毒和副百日咳分枝杆菌方面均为阴性。在阵发性咳嗽的情况下,百日咳组和百日咳样组的临床症状有显著差异。结论:百日咳样综合征患儿感染百日咳双歧杆菌和呼吸道合胞病毒较为常见,应引起重视。该研究还证明了分子诊断方法的重要性,以及基于临床症状的诊断,在怀疑患有百日咳样综合征的儿童中。
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引用次数: 0
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Jundishapur Journal of Microbiology
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