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Antigen presentation of post-translationally modified peptides in major histocompatibility complexes 翻译后修饰肽在主要组织相容性复合体中的抗原呈递。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-11-28 DOI: 10.1111/imcb.12839
Alexine S de Wit, Frans Bianchi, Geert van den Bogaart

T cells of the adaptive immune system recognize pathogens and malignantly transformed cells through a process called antigen presentation. During this process, peptides are displayed on major histocompatibility complex (MHC) class I and II molecules. Self-reactive T cells are typically removed or suppressed during T-cell development and through peripheral tolerance mechanisms, ensuring that only T cells recognizing peptides that are either absent or present in low abundance under normal conditions remain. This selective process allows T cells to respond to peptides derived from foreign proteins while ignoring those from self-proteins. However, T cells can also respond to peptides derived from proteins that have undergone post-translational modifications (PTMs). Over 200 different PTMs have been described, and while they are essential for protein function, localization and stability, their dysregulation is often associated with disease conditions. PTMs can affect the proteolytic processing of proteins and prevent MHC binding, thereby changing the repertoire of peptides presented on MHC molecules. However, it is also increasingly evident that many peptides presented on MHC molecules carry PTMs, which can alter their immunogenicity. As a result, the presentation of post-translationally modified peptides by MHC molecules plays a significant role in various diseases, as well as autoimmune disorders and allergies. This review will provide an overview of the impact of PTMs on antigen presentation and their implications for immune recognition and disease.

适应性免疫系统的T细胞通过抗原递呈过程识别病原体和恶性转化细胞。在这个过程中,多肽显示在主要组织相容性复合体(MHC)的I类和II类分子上。在T细胞发育过程中,通过外周耐受机制,自反应性T细胞通常会被移除或抑制,从而确保只有在正常条件下缺乏或低丰度存在的T细胞才能识别肽。这种选择性过程允许T细胞对来自外源蛋白的肽作出反应,而忽略来自自身蛋白的肽。然而,T细胞也可以对经过翻译后修饰(PTMs)的蛋白质衍生的肽产生反应。超过200种不同的ptm已被描述,虽然它们对蛋白质功能、定位和稳定性至关重要,但它们的失调通常与疾病状况有关。PTMs可以影响蛋白质的蛋白水解过程,阻止MHC结合,从而改变MHC分子上呈现的肽库。然而,也越来越明显的是,MHC分子上呈递的许多肽携带PTMs,这可以改变其免疫原性。因此,MHC分子翻译后修饰肽的呈现在各种疾病,以及自身免疫性疾病和过敏中起着重要作用。本文将综述ptm对抗原呈递的影响及其对免疫识别和疾病的影响。
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引用次数: 0
Anyone can cook, but only the fearless can be a great chef 人人都会烹饪,但只有无所畏惧的人才能成为大厨。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-11-28 DOI: 10.1111/imcb.12841
Eduardo J Villablanca

Role models play a crucial role in inspiring and guiding careers in science, offering tangible examples of success and resilience. Reflecting on my journey from a small town in southern Chile to leading a lab at Karolinska Institutet, I've learned that relatable role models are particularly impactful for overcoming imposter syndrome and fostering a sense of belonging in academia. Early in my career, I drew inspiration from peers and mentors, gradually building my confidence and embracing my strengths. Later, exposure to interdisciplinary role models expanded my horizons and shaped my approach to science. Now, as a PI, I see my role as both a coach and mentor, fostering a team dynamic that amplifies individual strengths. Success in science often stems from fearlessness, adaptability and a willingness to seize opportunities, even when the outcome is uncertain. My journey demonstrates that good scientists can come from anywhere, including a small town in southern Chile.

榜样在激励和引导科学事业方面发挥着至关重要的作用,他们提供了成功和坚韧不拔的具体范例。回顾我从智利南部小镇到领导卡罗林斯卡医学院实验室的历程,我认识到,可亲的榜样对于克服冒名顶替综合症和培养学术归属感尤其具有影响力。在我职业生涯的早期,我从同龄人和导师那里汲取灵感,逐渐建立起自信并拥抱自己的优势。后来,接触到跨学科的榜样,拓展了我的视野,塑造了我的科学方法。现在,作为一名首席科学家,我将自己的角色视为教练和导师,培养团队活力,放大个人优势。科学领域的成功往往源于无畏精神、适应能力和抓住机遇的意愿,即使结果并不确定。我的经历表明,优秀的科学家可以来自任何地方,包括智利南部的一个小镇。
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引用次数: 0
The future of scientific labs: how we are making our research more sustainable 科学实验室的未来:我们如何使我们的研究更具可持续性。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-11-27 DOI: 10.1111/imcb.12840
Ebony A Monson, Stephanie Rutter, Christopher C Reimann, Andrea Bueno-Pedraz, Caitlin Vella, Xavier G Pearce, Jennifer L Wood, Kerry V Fanson

The need for climate action is becoming increasingly urgent, and research labs need to be part of the solution. Scientific labs consume large amounts of energy and water and produce significant waste. Globally, scientific research generates over 5.5 million tons of plastic waste annually, which is ~2% of the world's plastic waste. Recognizing the need for sustainability in research, the La Trobe Green Labs program leads this effort in Australia. Since receiving Australia's first “MyGreenLab” certification in 2021, a dedicated steering committee of volunteers has driven successful green initiatives at La Trobe University. The program ensures proper implementation of sustainable practices, enhanced safety and integration with existing operations. More importantly, these small changes will initiate wide-scale and long-term transformations that will improve research into more sustainable options for the future.

气候行动的需求日益迫切,而研究实验室需要成为解决方案的一部分。科学实验室消耗大量能源和水,并产生大量废物。在全球范围内,科学研究每年产生的塑料垃圾超过 550 万吨,约占全球塑料垃圾总量的 2%。拉筹伯绿色实验室计划认识到科研工作的可持续性发展的必要性,在澳大利亚率先开展了这项工作。自 2021 年获得澳大利亚首个 "我的绿色实验室"(MyGreenLab)认证以来,一个由志愿者组成的专门指导委员会已成功推动了拉筹伯大学的绿色倡议。该计划确保了可持续实践的正确实施、安全性的提高以及与现有业务的整合。更重要的是,这些微小的变化将启动大规模的长期转型,从而改进研究,为未来提供更多可持续的选择。
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引用次数: 0
Prenatal Skin Cell Atlas reveals macrophages’ role beyond immunity 产前皮肤细胞图谱揭示了巨噬细胞在免疫之外的作用。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-11-17 DOI: 10.1111/imcb.12837
Céline Pattaroni

In this article, we discuss a recently published study by Gopee et al., who have unveiled a surprising role for macrophages in human prenatal skin development, extending far beyond their traditional immune function. By constructing a comprehensive multi-omics single-cell atlas of human prenatal skin, they demonstrate that innate immune cells play a key role in hair follicle formation, scarless wound healing and neurovascular development.

在这篇文章中,我们讨论了 Gopee 等人最近发表的一项研究,他们揭示了巨噬细胞在人类产前皮肤发育中的惊人作用,远远超出了其传统的免疫功能。通过构建全面的人类产前皮肤多组学单细胞图谱,他们证明了先天性免疫细胞在毛囊形成、无疤痕伤口愈合和神经血管发育中发挥着关键作用。
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引用次数: 0
The journey of young scientists in Brazil: challenges and perspectives 巴西青年科学家的历程:挑战与展望。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-11-09 DOI: 10.1111/imcb.12835
Fabiana Corsi-Zuelli

As a young scientist in Brazil, my journey began with a modest education in a public school system that often lacked the resources needed to provide students with comprehensive support. However, with persistence and determination, I successfully gained admission to the University of São Paulo, a prestigious institution and one of the top universities in Latin America. My research focuses on the relationship between the nervous and immune systems in psychosis, a topic I am deeply passionate about. In this piece, I will discuss the systemic issues within the Brazilian education and research systems and delve deeper into my own challenges and achievements as a young scientist in Brazil, sharing insights that can inspire others in similar situations.

作为巴西的一名年轻科学家,我的求学之路始于在公立学校系统接受的普通教育,该系统往往缺乏为学生提供全面支持所需的资源。然而,凭借毅力和决心,我成功考入了圣保罗大学,这是一所享有盛誉的学府,也是拉丁美洲最顶尖的大学之一。我的研究重点是神经系统和免疫系统在精神病中的关系,这是我深感热衷的课题。在这篇文章中,我将讨论巴西教育和研究体系中的系统性问题,并深入探讨我作为一名巴西青年科学家所面临的挑战和取得的成就,与大家分享我的见解,以启发其他处于类似境况的人。
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引用次数: 0
When academia met industry: working toward a needle-free vaccination future in the sunshine state 当学术界遇到工业界:在阳光之州努力实现无针疫苗接种的未来。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-11-09 DOI: 10.1111/imcb.12836
Arti Medhavy, Alex Johnston, Imogen Bermingham, Danielle I Stanisic

Located in Brisbane's Northshore riverfront precinct, just meters from the iconic Brisbane River, is the new Vaxxas Biomedical Facility. Dr Imogen Bermingham is a Principal Scientist in the Formulation and Analytical Team at Vaxxas, an Australian biotech company focused on developing a needle-free vaccination technology. Here, we discuss her work at Vaxxas, highlighting the opportunities for translational research within the growing biotech industry landscape in Queensland, Australia. Dr Bermingham also reflects on her transition from academia to industry, leveraging her skill set and expanding her capabilities within the dynamic research environment at Vaxxas.

新的 Vaxxas 生物医药设施位于布里斯班北岸河滨区,距离标志性的布里斯班河仅数米之遥。伊莫金-伯明翰(Imogen Bermingham)博士是澳大利亚生物技术公司Vaxxas配方和分析团队的首席科学家,该公司致力于开发无针疫苗接种技术。在这里,我们将讨论她在Vaxxas公司的工作,重点介绍在澳大利亚昆士兰州不断发展的生物技术产业中开展转化研究的机会。Bermingham 博士还回顾了她从学术界到产业界的转变,在 Vaxxas 充满活力的研究环境中利用自己的技能组合和扩展自己的能力。
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引用次数: 0
Choose your own T-cell fate: creation of a narrative-based, decision-making activity to engage students in immunology 选择自己的 T 细胞命运:创建基于叙事的决策活动,让学生参与免疫学。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-11-05 DOI: 10.1111/imcb.12833
Helen E Ritchie, Gareth Denyer, Kylie E Webster

Undergraduate courses in immunology are content-heavy and combined with a new, complex vocabulary, can be an overwhelming subject for students. In-class active learning approaches have been found to improve understanding of difficult concepts in science, technology, engineering and mathematics (STEM) disciplines; however, many undergraduate courses maintain a high dependence on lecture-style teaching because of time constraints, content demands and student resistance. We designed an online, out-of-class activity, the “Life and Death of a T cell”, to complement a lecture on a complex immunological concept, T-cell development. Inspired by the “Choose Your Own Adventure” children's books, a fictional narrative was created in which students assume the role of a cell with a dream of becoming a helper T cell. Decision-making scenarios then prompt students to draw on their knowledge from the lecture to successfully navigate the steps of T-cell development. The activity was built on two platforms, Google Forms and H5P (HTML 5 Package), both of which are readily accessible and allow the inclusion of branching logic and the creation of a decision tree–based activity. An anonymous survey revealed that students found this interactive approach enjoyable, and their perceived understanding of the content significantly increased. Students appreciated the inclusion of a novel learning resource, with requests for similar activities to be developed for other immunological concepts. In conclusion, we developed a narrative-based, decision-making activity to complement a lecture on T-cell development. As an out-of-class activity, this style of learning approach can potentially capitalize on the benefits of active learning, while also overcoming barriers of student resistance.

免疫学本科课程内容繁杂,再加上新的、复杂的词汇,对学生来说可能是一门难以承受的学科。研究发现,课内主动学习方法可以提高学生对科学、技术、工程和数学(STEM)学科中困难概念的理解;然而,由于时间限制、内容要求和学生的抵触情绪,许多本科课程仍然高度依赖讲授式教学。我们设计了一个名为 "T 细胞的生与死 "的在线课外活动,以补充关于 T 细胞发育这一复杂免疫学概念的讲座。受 "选择你自己的冒险"(Choose Your Own Adventure)儿童读物的启发,我们设计了一个虚构的故事,让学生扮演一个梦想成为辅助性 T 细胞的细胞。然后,决策情景会促使学生利用讲座中的知识成功完成 T 细胞发育的各个步骤。该活动建立在两个平台上:Google Forms 和 H5P(HTML 5 软件包),这两个平台都很容易访问,并允许加入分支逻辑和创建基于决策树的活动。一项匿名调查显示,学生们认为这种互动方法很有趣,而且他们对教学内容的理解能力明显提高。学生们对这种新颖的学习资源表示赞赏,并要求为其他免疫学概念开发类似的活动。总之,我们开发了一种基于叙事的决策活动,以补充有关 T 细胞发育的讲座。作为一种课外活动,这种学习方式既能发挥主动学习的优势,又能克服学生的抵触情绪。
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引用次数: 0
Identification of clonally expanded γδ T-cell populations during CAR-T cell therapy 识别 CAR-T 细胞疗法中克隆扩增的 γδ T 细胞群。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-11-05 DOI: 10.1111/imcb.12834
Arman Safavi, Jerome Samir, Mandeep Singh, Martina Bonomi, Raymond Yip Louie, Kenneth Micklethwaite, Fabio Luciani

Anti-CD19 Chimeric Antigen Receptor (CAR)-T cell therapies have shown promise for treating B cell malignancies, but the clinical outcome is influenced by both the CAR-T product and the patient's immune system. The role of γδ T cells in the context of CAR-T cell therapy remains poorly understood. This study investigates the transcriptional heterogeneity, clonal expansion and dynamics of γδ T cells in patients undergoing anti-CD19 CAR-T cell therapy. Longitudinal single cell multi-omics analysis was performed on γδ T cells from four patients receiving anti-CD19 CAR-T cell therapy. Single cell RNA-seq, antibody-based protein profiling (AbSeq) and full-length TCRγδ sequences revealed clonally expanded populations displaying plasticity in T cell differentiation, and temporal dynamics of large clones, suggesting ongoing expansion and differentiation. Clonally expanded γδ T cells had heterogeneous gene expression profiles, occupying seven transcriptionally distinct clusters. Analysis of chemokine markers indicated cluster-specific homing tendencies of circulating γδ T cells to peripheral tissues. We found unexpectedly high frequencies of Vδ1 and Vδ3 cells in the blood with distinct gene and protein expression profiles. This analysis provides insights into the dynamic and heterogeneous nature of γδ T cells following anti-CD19 CAR-T cell therapy, contributing valuable information for optimizing CAR-T cell therapies in B cell malignancies.

抗CD19嵌合抗原受体(CAR)-T细胞疗法已显示出治疗B细胞恶性肿瘤的前景,但临床结果受CAR-T产品和患者免疫系统的影响。γδT细胞在CAR-T细胞疗法中的作用仍鲜为人知。本研究调查了接受抗CD19 CAR-T细胞治疗的患者体内γδT细胞的转录异质性、克隆扩增和动态变化。对接受抗 CD19 CAR-T 细胞疗法的四名患者的 γδ T 细胞进行了纵向单细胞多组学分析。单细胞 RNA-seq、基于抗体的蛋白质分析(AbSeq)和全长 TCRγδ 序列揭示了克隆扩增的群体,显示了 T 细胞分化的可塑性,以及大克隆的时间动态性,表明了持续的扩增和分化。克隆扩增的γδT细胞具有异质性基因表达谱,占据了七个转录不同的集群。趋化因子标记物的分析表明,循环中的γδT细胞具有向外周组织归巢的特异性集群倾向。我们意外地发现,血液中的 Vδ1 和 Vδ3 细胞频率很高,而且基因和蛋白表达谱截然不同。这项分析深入揭示了抗CD19 CAR-T细胞疗法后γδT细胞的动态和异质性,为优化B细胞恶性肿瘤的CAR-T细胞疗法提供了有价值的信息。
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引用次数: 0
The power of networking in science and academia 科学和学术界网络的力量。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-11-04 DOI: 10.1111/imcb.12832
Jessica G Borger

In science and academia, success is often shaped by both knowledge and networking. Reflecting on nearly two decades in academic research, I recount my experience as a postdoctoral immunologist returning to Australia with limited local connections and support. Upon re-establishing myself in Australia, I initially faced barriers that restricted my visibility and collaborations. A turning point came when personal challenges motivated me to actively network, leading to valuable collaborations and career opportunities. By initiating conversations with academic leaders and peers, I expanded my network and established numerous leadership roles, even as a “junior” postdoc through founding a symposium, engaging with an immunology society, volunteering on various academic and advocacy committees, contributing to public outreach and nationally advocating for gender equity in science. These experiences reinforced that networking is about fostering meaningful relationships and creating opportunities to grow professionally. I provide advice on how to increase your networks by volunteering at work, when attending conferences, through contributing to societies and building a social media presence. My journey highlights the importance of being proactive in building networks, which can open doors, amplify one's voice, and drive career advancement in science and academia.

在科学和学术界,成功往往取决于知识和人脉。在回顾近二十年的学术研究生涯时,我讲述了自己作为一名博士后免疫学家在当地人脉和支持有限的情况下返回澳大利亚的经历。在澳大利亚重新站稳脚跟后,我最初面临的障碍限制了我的知名度和合作。转折点出现了,个人的挑战促使我积极拓展人脉,从而获得了宝贵的合作和职业机会。通过主动与学术带头人和同行交谈,我扩大了自己的人际网络,并确立了许多领导角色,即使是作为一名 "初级 "博士后,我也创办了一个研讨会,参与了一个免疫学协会,在各种学术和宣传委员会中担任志愿者,为公共宣传做出了贡献,并在全国范围内倡导科学中的性别平等。这些经历让我进一步认识到,人际网络的意义在于培养有意义的关系,并创造专业成长的机会。我就如何通过工作中的志愿服务、参加会议时的志愿服务、为学会做贡献以及建立社交媒体形象来增加人际网络提供了建议。我的经历凸显了积极主动建立人际关系网络的重要性,它可以打开大门,扩大自己的声音,推动科学界和学术界的职业发展。
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引用次数: 0
Altered immunophenotypic expression in the peripheral bladder cancer immune landscape 外周膀胱癌免疫景观中免疫表型表达的改变。
IF 3.2 4区 医学 Q3 CELL BIOLOGY Pub Date : 2024-10-30 DOI: 10.1111/imcb.12829
Nathan J Mackenzie, Kate Zimmermann, Clarissa Nicholls, Mahasha PJ Perera, Alexander Ngoo, Penny L Jeffery, Ian Vela, Tony J Kenna, Elizabeth D Williams, Patrick B Thomas

Treatments targeting the immune system only benefit a subset of patients with bladder cancer (BC). Biomarkers predictive of BC progression and response to specific therapeutic interventions are required. We evaluated whether peripheral blood immune subsets and expression of clinically relevant immune checkpoint markers are associated with clinicopathologic features of BC. Peripheral blood mononuclear cells isolated from blood collected from 23 patients with BC and 9 age-matched unaffected-by-cancer control donors were assessed using a 21-parameter flow cytometry panel composed of markers of T, B, natural killer and myeloid populations and immune checkpoint markers. Patients with BC had significantly lower numbers of circulating CD19+ B cells and elevated circulating CD4+CD8+ T cells compared with the control cohort. Immune checkpoint markers programmed cell death protein 1 (PD-1) and T-cell immunoglobulin and mucin-domain containing-3 (TIM-3) were elevated in the total peripheral immune cell population in patients with BC. Within the BC cohort, PD-1 expression in T and myeloid cells was elevated in muscle-invasive compared with non–muscle-invasive disease. In addition, elevated T, B and myeloid PD-1 cell surface expression was significantly associated with tumor stage, suggesting that measures of peripheral immune cell exhaustion may be a predictor of tumor progression in BC. Finally, positive correlations between expression levels of the various immune checkpoints both overall and within key peripheral blood immune subsets collected from patients with BC were observed, highlighting likely coregulation of peripheral immune checkpoint expression. The peripheral blood immunophenotype in patients with BC is altered compared with cancer-free individuals. Understanding this dysregulated immune profile will contribute to the identification of diagnostic and prognostic indicators to guide effective immune-targeted, personalized treatments.

针对免疫系统的治疗只能使一部分膀胱癌(BC)患者受益。需要能预测膀胱癌进展和对特定治疗干预反应的生物标志物。我们评估了外周血免疫亚群和临床相关免疫检查点标记物的表达是否与膀胱癌的临床病理特征相关。从 23 名 BC 患者和 9 名年龄匹配的未受癌症影响的对照供血者的血液中分离出外周血单核细胞,使用 21 个参数的流式细胞仪面板进行评估,该面板由 T、B、自然杀伤细胞、髓样细胞群标记物和免疫检查点标记物组成。与对照组相比,BC 患者的循环 CD19+ B 细胞数量明显减少,而循环 CD4+CD8+ T 细胞数量增加。免疫检查点标记物程序性细胞死亡蛋白1(PD-1)和T细胞免疫球蛋白和含粘蛋白域-3(TIM-3)在BC患者的外周免疫细胞总数中升高。在 BC 患者群中,肌肉浸润性疾病的 T 细胞和骨髓细胞中 PD-1 的表达高于非肌肉浸润性疾病。此外,T、B和髓系PD-1细胞表面表达的升高与肿瘤分期显著相关,这表明外周免疫细胞衰竭的测量值可能是预测BC肿瘤进展的一个指标。最后,从 BC 患者采集的外周血免疫亚群中观察到,各种免疫检查点的表达水平在整体上和关键亚群中都呈正相关,这表明外周血免疫检查点的表达可能存在核心关联。与未患癌症的人相比,BC 患者的外周血免疫表型发生了改变。了解这种失调的免疫特征将有助于确定诊断和预后指标,从而指导有效的免疫靶向个性化治疗。
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引用次数: 0
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Immunology & Cell Biology
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