Roberta Esposito, Roberta Trani, Marco Bertolino, Michele Sonnessa, Gaia Laurenzi, Valerio Zupo, Caterina Longo, Maria Costantini
Marine sponges are recognized as reservoirs of diverse microorganisms that produce bioactive natural compounds. In this study, we conducted a metataxonomic analysis of Geodia cydonium specimens collected from four sites in Italy: Secca delle Fumose (Gulf of Naples, Tyrrhenian Sea), Mar Piccolo of Taranto and an Integrated Multi-Trophic Aquaculture (IMTA) system in Mar Grande of Taranto (both located in the Ionian Sea), and Polignano a Mare (Adriatic Sea). Our results revealed a highly diverse microbial community within the sponges, encompassing 24 bacterial phyla. Among these, Chloroflexota was the most abundant phylum, accounting for an average of 30.2% of the total community across all samples. In addition, the majority of the microbiota was composed of Actinomycetota, Proteobacteria, Acidobacteriota, Poribacteriota, Gemmatimonadota, and Dadabacteria. The sponge sample from Polignano a Mare exhibited the richest and most diverse bacterial community. This observation was supported by phylogenetic analysis, which identified seven bacterial genera, Albidovulum, Filomicrobium, Microtrix, Gaiellales, D90 (Gammaproteobacteria class), and Blastopirellula, exclusive to this site. Several of these taxa are known for their potential biotechnological applications, underlining the significance of site-specific microbial diversity in G. cydonium.
海洋海绵被认为是产生生物活性天然化合物的各种微生物的储存库。本研究对意大利第勒尼安海那不勒斯湾Secca delle Fumose、塔兰托Mar Piccolo、塔兰托Mar Grande(均位于爱奥尼亚海)和Polignano a Mare(亚得里亚海)四个地点采集的cydonium Geodia标本进行了元分类学分析。我们的研究结果揭示了海绵中高度多样化的微生物群落,包括24个细菌门。其中氯氟藻门数量最多,平均占总群落的30.2%。此外,大部分微生物群由放线菌门、变形菌门、酸性菌门、Poribacteriota、Gemmatimonadota和dadabobacteria组成。海绵样品中细菌群落最丰富、种类最多。系统发育分析支持了这一观察结果,鉴定出该地点特有的7个细菌属:Albidovulum、Filomicrobium、Microtrix、Gaiellales、D90 (Gammaproteobacteria类)和Blastopirellula。这些分类群中有几个因其潜在的生物技术应用而闻名,强调了在cydonium中特定地点的微生物多样性的重要性。
{"title":"Exploring the Microbial Reservoir of <i>Geodia cydonium</i> (Linnaeus, 1767): Insights into Site-Specific Diversity and Biotechnological Potential.","authors":"Roberta Esposito, Roberta Trani, Marco Bertolino, Michele Sonnessa, Gaia Laurenzi, Valerio Zupo, Caterina Longo, Maria Costantini","doi":"10.3390/md24010002","DOIUrl":"10.3390/md24010002","url":null,"abstract":"<p><p>Marine sponges are recognized as reservoirs of diverse microorganisms that produce bioactive natural compounds. In this study, we conducted a metataxonomic analysis of <i>Geodia cydonium</i> specimens collected from four sites in Italy: Secca delle Fumose (Gulf of Naples, Tyrrhenian Sea), Mar Piccolo of Taranto and an Integrated Multi-Trophic Aquaculture (IMTA) system in Mar Grande of Taranto (both located in the Ionian Sea), and Polignano a Mare (Adriatic Sea). Our results revealed a highly diverse microbial community within the sponges, encompassing 24 bacterial phyla. Among these, Chloroflexota was the most abundant phylum, accounting for an average of 30.2% of the total community across all samples. In addition, the majority of the microbiota was composed of Actinomycetota, Proteobacteria, Acidobacteriota, Poribacteriota, Gemmatimonadota, and Dadabacteria. The sponge sample from Polignano a Mare exhibited the richest and most diverse bacterial community. This observation was supported by phylogenetic analysis, which identified seven bacterial genera, <i>Albidovulum</i>, <i>Filomicrobium</i>, <i>Microtrix</i>, <i>Gaiellales</i>, <i>D90</i> (Gammaproteobacteria class), and <i>Blastopirellula</i>, exclusive to this site. Several of these taxa are known for their potential biotechnological applications, underlining the significance of site-specific microbial diversity in <i>G. cydonium</i>.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"24 1","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12842704/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146052744","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ekaterina N Lyukmanova, Tamara Y Gornostaeva, Sergey V Shabelnikov, Zakhar O Shenkarev, Mikhail P Kirpichnikov, Alexander S Paramonov, Maxim L Bychkov
Recently, we found that Lystar5 protein from coelomic cells of A. rubens starfish interacts with nicotinic acetylcholine receptors (nAChRs) and integrin α8-like protein. We hypothesized that Lystar5 mediates detachment of coelomic cells from the matrix and their migration. Skin wound healing in humans is based on keratinocytes migration and is regulated by nAChRs and integrins. Here, we revealed that Lystar5 stimulates migration of human skin HaCaT keratinocytes and peripheral blood monocytes. Using ELISA, we found that Lystar5 binds to the membrane fraction of coelomic cells with its loops I and II, which form an active site of Lystar5 and resemble its pro-migratory activity. In keratinocytes and monocytes, Lystar5 and the peptides mimicking its loops I and II bound with α3, α4, and β2 nAChR and α5, αV, and β1 integrin subunits, which form molecular complexes. In keratinocytes, Lystar5 and its mimetics promoted short-term E/N cadherin switch and upregulated expression of α5 and αV integrins, EGFR, and ICAM-1. In keratinocytes and monocytes, Lystar5 and its mimetics upregulated E-selectin secretion. The ability of Lystar5 and its mimetics to stimulate skin keratinocyte migration and immune cell infiltration may be considered promising for the development of new wound-healing agents.
{"title":"Ly6/uPAR Protein from <i>Asterias rubens</i> Starfish Stimulates Migration and Invasion of Human Epithelial and Immune Cells.","authors":"Ekaterina N Lyukmanova, Tamara Y Gornostaeva, Sergey V Shabelnikov, Zakhar O Shenkarev, Mikhail P Kirpichnikov, Alexander S Paramonov, Maxim L Bychkov","doi":"10.3390/md24010003","DOIUrl":"10.3390/md24010003","url":null,"abstract":"<p><p>Recently, we found that Lystar5 protein from coelomic cells of <i>A. rubens</i> starfish interacts with nicotinic acetylcholine receptors (nAChRs) and integrin α8-like protein. We hypothesized that Lystar5 mediates detachment of coelomic cells from the matrix and their migration. Skin wound healing in humans is based on keratinocytes migration and is regulated by nAChRs and integrins. Here, we revealed that Lystar5 stimulates migration of human skin HaCaT keratinocytes and peripheral blood monocytes. Using ELISA, we found that Lystar5 binds to the membrane fraction of coelomic cells with its loops I and II, which form an active site of Lystar5 and resemble its pro-migratory activity. In keratinocytes and monocytes, Lystar5 and the peptides mimicking its loops I and II bound with α3, α4, and β2 nAChR and α5, αV, and β1 integrin subunits, which form molecular complexes. In keratinocytes, Lystar5 and its mimetics promoted short-term E/N cadherin switch and upregulated expression of α5 and αV integrins, EGFR, and ICAM-1. In keratinocytes and monocytes, Lystar5 and its mimetics upregulated E-selectin secretion. The ability of Lystar5 and its mimetics to stimulate skin keratinocyte migration and immune cell infiltration may be considered promising for the development of new wound-healing agents.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"24 1","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12843386/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146052767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Microalgae represent some of the most promising eukaryotic platforms in biotechnology due to their rapid growth, simple cultivation requirements, reliance on sunlight as a primary energy source, and ability to synthesize high-value bioactive compounds. These characteristics have made microalgae attractive candidates in various fields, including biofuel production, carbon capture, and pharmaceutical development. However, several technical limitations have limited their large-scale use as sustainable biofactories. A paradigm shift is currently occurring thanks to the genetic manipulation of microalgae, driven by CRISPR-Cas technology. Significant progress has been made in the model species Chlamydomonas reinhardtii, particularly in the targeted and efficient insertion of foreign DNA. Despite this progress, key challenges remain, and further optimization of CRISPR-Cas methodologies is needed to fully unleash the genetic potential of this organism. This review provides an overview of the convergence of CRISPR-Cas technologies in microalgae research, highlighting their impact on genetic studies, metabolic engineering, and industrial applications. It summarizes recent advances in microalgal genome editing through CRISPR systems, outlines current technical challenges, and highlights future directions for improving the implementation of this innovative technology in microalgal biotechnology.
{"title":"CRISPR-Cas Technology Turns <i>Chlamydomonas reinhardtii</i> into a Flagship for Algal Biotechnology.","authors":"Amina Antonacci, Annalisa Masi, Vincenzo Vedi, Sara Colella, Federica Musella, Gabriella Fiorentino, Viviana Scognamiglio","doi":"10.3390/md24010001","DOIUrl":"10.3390/md24010001","url":null,"abstract":"<p><p>Microalgae represent some of the most promising eukaryotic platforms in biotechnology due to their rapid growth, simple cultivation requirements, reliance on sunlight as a primary energy source, and ability to synthesize high-value bioactive compounds. These characteristics have made microalgae attractive candidates in various fields, including biofuel production, carbon capture, and pharmaceutical development. However, several technical limitations have limited their large-scale use as sustainable biofactories. A paradigm shift is currently occurring thanks to the genetic manipulation of microalgae, driven by CRISPR-Cas technology. Significant progress has been made in the model species <i>Chlamydomonas reinhardtii</i>, particularly in the targeted and efficient insertion of foreign DNA. Despite this progress, key challenges remain, and further optimization of CRISPR-Cas methodologies is needed to fully unleash the genetic potential of this organism. This review provides an overview of the convergence of CRISPR-Cas technologies in microalgae research, highlighting their impact on genetic studies, metabolic engineering, and industrial applications. It summarizes recent advances in microalgal genome editing through CRISPR systems, outlines current technical challenges, and highlights future directions for improving the implementation of this innovative technology in microalgal biotechnology.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"24 1","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12842831/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146052699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lingyue Zhong, Yirui Wu, Xuefang Guan, Mei Xu, Juqing Huang, Yafeng Zheng, Qi Wang
Oyster peptides (OPs) have gained increasing attention for their excellent biological activities, especially immunomodulatory effects. In this study, oyster proteins were fermented using Lactobacillus casei to prepare bioactive peptides, and the effects of fermentation parameters (time, temperature, and inoculum amount) on the degree of hydrolysis (DH) were optimized. The optimal fermentation conditions were determined as 30 h, 35 °C, and 5% inoculum amount, resulting in a DH of 28.24%. Structural characterization showed that OPs were mainly composed of low-molecular-weight peptides (<1000 Da) with high hydrophobic amino acid content, and they exhibited good stability during in vitro gastrointestinal digestion. In vitro immunological evaluation using RAW264.7 macrophages demonstrated that OPs significantly enhanced phagocytic activity and nitric oxide (NO) production, and upregulated the mRNA expression levels of pro-inflammatory cytokines including interleukin (IL)-6, IL-1β, and tumor necrosis factor (TNF)-α. Mechanistically, OPs exerted immunostimulatory effects by specifically activating the extracellular signal-regulated kinase (ERK) pathway within the mitogen-activated protein kinase (MAPK) signaling cascade, without significant alterations in the phosphorylation levels of p38 and c-Jun N-terminal kinase (JNK). These findings highlight the potential of Lactobacillus casei-fermented oyster peptides as natural immunomodulatory ingredients for functional food development.
{"title":"Oyster Peptides Prepared by <i>Lactobacillus casei</i> Fermentation Enhance Immune Activity in RAW264.7 Cells via Activation of the MAPK Pathway.","authors":"Lingyue Zhong, Yirui Wu, Xuefang Guan, Mei Xu, Juqing Huang, Yafeng Zheng, Qi Wang","doi":"10.3390/md23120484","DOIUrl":"10.3390/md23120484","url":null,"abstract":"<p><p>Oyster peptides (OPs) have gained increasing attention for their excellent biological activities, especially immunomodulatory effects. In this study, oyster proteins were fermented using <i>Lactobacillus casei</i> to prepare bioactive peptides, and the effects of fermentation parameters (time, temperature, and inoculum amount) on the degree of hydrolysis (DH) were optimized. The optimal fermentation conditions were determined as 30 h, 35 °C, and 5% inoculum amount, resulting in a DH of 28.24%. Structural characterization showed that OPs were mainly composed of low-molecular-weight peptides (<1000 Da) with high hydrophobic amino acid content, and they exhibited good stability during in vitro gastrointestinal digestion. In vitro immunological evaluation using RAW264.7 macrophages demonstrated that OPs significantly enhanced phagocytic activity and nitric oxide (NO) production, and upregulated the mRNA expression levels of pro-inflammatory cytokines including interleukin (IL)-6, IL-1β, and tumor necrosis factor (TNF)-α. Mechanistically, OPs exerted immunostimulatory effects by specifically activating the extracellular signal-regulated kinase (ERK) pathway within the mitogen-activated protein kinase (MAPK) signaling cascade, without significant alterations in the phosphorylation levels of p38 and c-Jun N-terminal kinase (JNK). These findings highlight the potential of <i>Lactobacillus casei</i>-fermented oyster peptides as natural immunomodulatory ingredients for functional food development.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734967/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145820001","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Shufang Yang, Xue Lu, Jia Wang, Ye Liu, Man Nie, Jin Liu, Han Sun
Astaxanthin, a high-value keto-carotenoid with potent antioxidant and health-promoting properties, has gained global attention as a sustainable nutraceutical and biotechnological product. The green microalgae Haematococcus pluvialis and Chromochloris zofingiensis represent two promising natural producers, yet they differ markedly in physiology, productivity, and industrial scalability. This review provides a focused comparative analysis of these two species, emphasizing their quantitative performance differences. H. pluvialis can accumulate astaxanthin up to ~3-5% of dry biomass but typically reaches biomass densities of only 5-10 g L-1, whereas C. zofingiensis achieves ultrahigh biomass concentrations of 100-220 g L-1 under heterotrophic fed-batch fermentation, although its astaxanthin content is much lower (~0.1-0.5% DW). While H. pluvialis remains the benchmark for natural astaxanthin due to its exceptionally high cellular content, its thick cell wall, slow growth, and strict phototrophic requirements impose major cost and operational barriers. In contrast, C. zofingiensis exhibits rapid and flexible growth under heterotrophic, mixotrophic, or phototrophic conditions and can achieve ultrahigh biomass in fermentation, though its ketocarotenoid flux and astaxanthin accumulation remain comparatively limited. Meanwhile, a rapidly growing patent landscape demonstrates global technological competition, with major portfolios emerging in China, the United States, and Europe, spanning chemical synthesis, microbial fermentation, algal metabolic engineering, and high-density cultivation methods. These patents reveal clear innovation trends-ranging from solvent-free green synthesis routes to engineered microalgae and yeast chassis for enhanced astaxanthin production-which increasingly shape industrial development strategies. By synthesizing recent advances in metabolic engineering, two-stage cultivation, and green extraction technologies, this review identifies key knowledge gaps and outlines a practical roadmap for developing next-generation astaxanthin biorefineries, with an emphasis on scalable production and future integration into broader biorefinery frameworks. The findings aim to guide future research and provide actionable insights for scaling sustainable, cost-effective production of natural astaxanthin.
虾青素是一种高价值的类酮胡萝卜素,具有有效的抗氧化和促进健康的特性,作为一种可持续的营养保健和生物技术产品受到了全球的关注。绿色微藻雨红球藻和佐银绿球藻是两种很有前途的天然藻类,但它们在生理、生产力和工业可扩展性方面存在显著差异。本文综述了这两个物种的比较分析,强调了它们的定量性能差异。雨芽草(H. pluvialis)的虾青素积累量可达干生物量的~3-5%,但生物量密度通常仅为5-10 g L-1,而异养分批补料发酵的紫芽草(C. zoofingiensis)的虾青素含量要低得多(~0.1-0.5% DW),但其生物量浓度却高达100-220 g L-1。虽然由于其异常高的细胞含量,雨芽虾仍然是天然虾青素的基准,但其细胞壁厚、生长缓慢和严格的光养要求造成了主要的成本和操作障碍。相比之下,C. zofingiensis在异养、混合营养或光养条件下均表现出快速灵活的生长,在发酵过程中可以实现超高的生物量,但其类酮胡萝卜素通量和虾青素积累相对有限。与此同时,快速增长的专利格局显示了全球技术竞争,主要投资组合出现在中国、美国和欧洲,涵盖化学合成、微生物发酵、藻类代谢工程和高密度培养方法。这些专利揭示了清晰的创新趋势——从无溶剂的绿色合成路线到用于增强虾青素生产的工程微藻和酵母底盘——它们日益影响着工业发展战略。通过综合代谢工程、两阶段培养和绿色提取技术的最新进展,本文确定了关键的知识空白,并概述了开发下一代虾青素生物炼制的实用路线图,重点是可扩展生产和未来整合到更广泛的生物炼制框架中。这些发现旨在指导未来的研究,并为规模化、可持续、具有成本效益的天然虾青素生产提供可操作的见解。
{"title":"Astaxanthin from <i>Haematococcus pluvialis</i> and <i>Chromochloris zofingiensis</i>: Biosynthetic Pathways, Engineering Strategies, and Industrial Prospects.","authors":"Shufang Yang, Xue Lu, Jia Wang, Ye Liu, Man Nie, Jin Liu, Han Sun","doi":"10.3390/md23120485","DOIUrl":"10.3390/md23120485","url":null,"abstract":"<p><p>Astaxanthin, a high-value keto-carotenoid with potent antioxidant and health-promoting properties, has gained global attention as a sustainable nutraceutical and biotechnological product. The green microalgae <i>Haematococcus pluvialis</i> and <i>Chromochloris zofingiensis</i> represent two promising natural producers, yet they differ markedly in physiology, productivity, and industrial scalability. This review provides a focused comparative analysis of these two species, emphasizing their quantitative performance differences. <i>H. pluvialis</i> can accumulate astaxanthin up to ~3-5% of dry biomass but typically reaches biomass densities of only 5-10 g L<sup>-1</sup>, whereas <i>C. zofingiensis</i> achieves ultrahigh biomass concentrations of 100-220 g L<sup>-1</sup> under heterotrophic fed-batch fermentation, although its astaxanthin content is much lower (~0.1-0.5% DW). While <i>H. pluvialis</i> remains the benchmark for natural astaxanthin due to its exceptionally high cellular content, its thick cell wall, slow growth, and strict phototrophic requirements impose major cost and operational barriers. In contrast, <i>C. zofingiensis</i> exhibits rapid and flexible growth under heterotrophic, mixotrophic, or phototrophic conditions and can achieve ultrahigh biomass in fermentation, though its ketocarotenoid flux and astaxanthin accumulation remain comparatively limited. Meanwhile, a rapidly growing patent landscape demonstrates global technological competition, with major portfolios emerging in China, the United States, and Europe, spanning chemical synthesis, microbial fermentation, algal metabolic engineering, and high-density cultivation methods. These patents reveal clear innovation trends-ranging from solvent-free green synthesis routes to engineered microalgae and yeast chassis for enhanced astaxanthin production-which increasingly shape industrial development strategies. By synthesizing recent advances in metabolic engineering, two-stage cultivation, and green extraction technologies, this review identifies key knowledge gaps and outlines a practical roadmap for developing next-generation astaxanthin biorefineries, with an emphasis on scalable production and future integration into broader biorefinery frameworks. The findings aim to guide future research and provide actionable insights for scaling sustainable, cost-effective production of natural astaxanthin.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734979/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lihao Wang, Lei Gao, Chendong Yang, Mengfei Yin, Jiqin Sun, Luyao Yang, Chanjuan Liu, Simon F R Hinkley, Guangli Yu, Chao Cai
The ongoing COVID-19 pandemic, caused by SARS-CoV-2, continues to pose major global health challenges despite extensive vaccination efforts. Variant escape, waning immunity, and reduced vaccine efficacy in immunocompromised populations underscore the urgent need for complementary antiviral therapeutics. Here, we report the design, synthesis, and biological evaluation of precision-engineered dermatan sulfate (DS)-mimetic glycopolymers as multi-targeted inhibitors of SARS-CoV-2. Guided by molecular docking and virtual screening, sulfation at the C2 and C4 positions of iduronic acid was identified as critical for binding to the viral spike protein and inhibiting host and viral enzymes, including heparanase (HPSE) and main protease (Mpro). Chemically synthesized DS disaccharides were covalently grafted onto polymer scaffolds via a post-modification strategy, yielding glycopolymers with well-defined assembly that form uniform nanoparticles under physiological conditions. Surface plasmon resonance and pseudovirus assays revealed strong binding to the viral spike protein (KD ≈ 177 nM), potent viral neutralization, and minimal cytotoxicity. Cellular uptake studies further demonstrated efficient internalization of nanoparticles and intracellular inhibition of HPSE and Mpro. These results establish a modular, non-anticoagulant, and glycosaminoglycan-mimetic platform for the development of broad-spectrum antiviral agents to complement vaccination and enhance preparedness against emerging coronavirus variants.
{"title":"Precision-Engineered Dermatan Sulfate-Mimetic Glycopolymers for Multi-Targeted SARS-CoV-2 Inhibition.","authors":"Lihao Wang, Lei Gao, Chendong Yang, Mengfei Yin, Jiqin Sun, Luyao Yang, Chanjuan Liu, Simon F R Hinkley, Guangli Yu, Chao Cai","doi":"10.3390/md23120486","DOIUrl":"10.3390/md23120486","url":null,"abstract":"<p><p>The ongoing COVID-19 pandemic, caused by SARS-CoV-2, continues to pose major global health challenges despite extensive vaccination efforts. Variant escape, waning immunity, and reduced vaccine efficacy in immunocompromised populations underscore the urgent need for complementary antiviral therapeutics. Here, we report the design, synthesis, and biological evaluation of precision-engineered dermatan sulfate (DS)-mimetic glycopolymers as multi-targeted inhibitors of SARS-CoV-2. Guided by molecular docking and virtual screening, sulfation at the C2 and C4 positions of iduronic acid was identified as critical for binding to the viral spike protein and inhibiting host and viral enzymes, including heparanase (HPSE) and main protease (M<sup>pro</sup>). Chemically synthesized DS disaccharides were covalently grafted onto polymer scaffolds via a post-modification strategy, yielding glycopolymers with well-defined assembly that form uniform nanoparticles under physiological conditions. Surface plasmon resonance and pseudovirus assays revealed strong binding to the viral spike protein (K<i><sub>D</sub></i> ≈ 177 nM), potent viral neutralization, and minimal cytotoxicity. Cellular uptake studies further demonstrated efficient internalization of nanoparticles and intracellular inhibition of HPSE and M<sup>pro</sup>. These results establish a modular, non-anticoagulant, and glycosaminoglycan-mimetic platform for the development of broad-spectrum antiviral agents to complement vaccination and enhance preparedness against emerging coronavirus variants.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734876/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145820073","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The biomass and lipid production responses of the psychrophilic marine thraustochytrid Thraustochytrium sp. RT2316-16 were assessed in chemically defined media comprising glucose, up to 17 amino acids and up to 9 B-vitamins and mineral salts. Compared to the control medium with all amino acids and B-vitamins (biomass concentration: 7.1 ± 0.1 g L-1; total lipid content: 30.4 ± 0.5% of the DW), the growth of RT2316-16 was reduced by more than 50% in the medium that lacked cyanocobalamin or pyridoxamine. The total lipid content of the biomass grown in the absence of vitamins was 63% lower than in the biomass produced in the control medium. The composition of the B-vitamin mixture modulated the fatty acid composition, an effect that may have been related to the availability of dissolved oxygen. In bioreactor culture with the dissolved oxygen level controlled to ≥10% of air saturation, the microorganism consumed all 17 amino acids; 8 of the amino acids were fully consumed within a 0-33 h period, in which the specific growth rate was 0.065 h-1. Under these culture conditions, the sum of eicosapentaenoic acid and docosahexaenoic acid in the total fatty acid content rose from 15% (at time 0) to 54% (after 95 h). A medium that contained the 9 amino acids that were not preferentially consumed favored the accumulation of total lipids, but reduced biomass growth.
在由葡萄糖、多达17种氨基酸、多达9种b族维生素和矿物盐组成的化学定义培养基中,研究了嗜冷性海洋Thraustochytrium sp. RT2316-16的生物量和脂质生产反应。与添加所有氨基酸和b族维生素的对照培养基(生物量浓度为7.1±0.1 g L-1,总脂质含量为DW的30.4±0.5%)相比,RT2316-16在缺乏氰钴胺素或吡哆胺的培养基中生长降低了50%以上。在没有维生素的培养基中生长的生物量的总脂含量比在对照培养基中生产的生物量低63%。b族维生素混合物的组成调节了脂肪酸的组成,这种作用可能与溶解氧的可用性有关。在溶解氧水平控制在空气饱和度≥10%的生物反应器培养中,微生物消耗了全部17种氨基酸;其中8种氨基酸在0 ~ 33 h内被完全消耗,比生长率为0.065 h-1。在此培养条件下,二十碳五烯酸和二十二碳六烯酸在总脂肪酸含量中的总和从0时的15%上升到95 h后的54%。含有未被优先消耗的9种氨基酸的培养基有利于总脂质的积累,但降低了生物量的增长。
{"title":"Biomass Growth and Fatty Acid Production by the Marine <i>Thraustochytrium</i> sp. RT2316-16 in Chemically Defined Media.","authors":"Liset Flores, María Paz Lefiguala, Carolina Shene","doi":"10.3390/md23120482","DOIUrl":"10.3390/md23120482","url":null,"abstract":"<p><p>The biomass and lipid production responses of the psychrophilic marine thraustochytrid <i>Thraustochytrium</i> sp. RT2316-16 were assessed in chemically defined media comprising glucose, up to 17 amino acids and up to 9 B-vitamins and mineral salts. Compared to the control medium with all amino acids and B-vitamins (biomass concentration: 7.1 ± 0.1 g L<sup>-1</sup>; total lipid content: 30.4 ± 0.5% of the DW), the growth of RT2316-16 was reduced by more than 50% in the medium that lacked cyanocobalamin or pyridoxamine. The total lipid content of the biomass grown in the absence of vitamins was 63% lower than in the biomass produced in the control medium. The composition of the B-vitamin mixture modulated the fatty acid composition, an effect that may have been related to the availability of dissolved oxygen. In bioreactor culture with the dissolved oxygen level controlled to ≥10% of air saturation, the microorganism consumed all 17 amino acids; 8 of the amino acids were fully consumed within a 0-33 h period, in which the specific growth rate was 0.065 h<sup>-1</sup>. Under these culture conditions, the sum of eicosapentaenoic acid and docosahexaenoic acid in the total fatty acid content rose from 15% (at time 0) to 54% (after 95 h). A medium that contained the 9 amino acids that were not preferentially consumed favored the accumulation of total lipids, but reduced biomass growth.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734794/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The past five years have marked a significant evolution in terpenoid natural product research, with direct implications for marine drug discovery [...].
过去五年标志着萜类天然产物研究取得了重大进展,对海洋药物的发现具有直接影响[…]。
{"title":"Marine-Derived Terpenes: Chemistry, Synthesis and Their Therapeutic Potential.","authors":"Jinmei Xia","doi":"10.3390/md23120483","DOIUrl":"10.3390/md23120483","url":null,"abstract":"<p><p>The past five years have marked a significant evolution in terpenoid natural product research, with direct implications for marine drug discovery [...].</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734945/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145820050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Heabin Kim, Seung-Hyun Jung, Seonmi Jo, Jong Won Han, Jei Ha Lee
Marine algae are a prolific bioactive peptide source with a broad pharmacological potential. We characterized MP28, a cationic peptide isolated from the green alga Bryopsis plumosa. Structural modeling indicated a predominantly amphipathic α-helix (residues 3-16) flanked by flexible termini and stabilized by intramolecular disulfide bonds, a motif typical of membrane-active anticancer peptides. Functionally, MP28 demonstrated potent activity against non-small-cell lung cancer cell lines (A549, H460, H1299) without affecting non-tumorigenic lung fibroblasts (MRC-5). In vitro, MP28 decreased cell viability and clonogenic growth and suppressed migration and invasion in a dose-dependent manner. Flow cytometry revealed increased early/late apoptotic fractions, accompanied by caspase-9 activation, consistent with engagement of the intrinsic apoptotic pathway. In a mouse xenograft model, MP28 treatment significantly reduced tumor size compared with that of controls. Collectively, MP28 may be a potent anticancer peptide that exhibits selective cytotoxicity and low toxicity toward normal cells.
{"title":"Induction of Apoptotic Cell Death in Non-Small-Cell Lung Cancer Cells by MP28 Peptide Derived from <i>Bryopsis plumosa</i>.","authors":"Heabin Kim, Seung-Hyun Jung, Seonmi Jo, Jong Won Han, Jei Ha Lee","doi":"10.3390/md23120481","DOIUrl":"10.3390/md23120481","url":null,"abstract":"<p><p>Marine algae are a prolific bioactive peptide source with a broad pharmacological potential. We characterized MP28, a cationic peptide isolated from the green alga <i>Bryopsis plumosa</i>. Structural modeling indicated a predominantly amphipathic α-helix (residues 3-16) flanked by flexible termini and stabilized by intramolecular disulfide bonds, a motif typical of membrane-active anticancer peptides. Functionally, MP28 demonstrated potent activity against non-small-cell lung cancer cell lines (A549, H460, H1299) without affecting non-tumorigenic lung fibroblasts (MRC-5). In vitro, MP28 decreased cell viability and clonogenic growth and suppressed migration and invasion in a dose-dependent manner. Flow cytometry revealed increased early/late apoptotic fractions, accompanied by caspase-9 activation, consistent with engagement of the intrinsic apoptotic pathway. In a mouse xenograft model, MP28 treatment significantly reduced tumor size compared with that of controls. Collectively, MP28 may be a potent anticancer peptide that exhibits selective cytotoxicity and low toxicity toward normal cells.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734986/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145820044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lixiao Liu, Hackwon Do, Jong-Oh Kim, Jun Hyuck Lee, Hak Jun Kim
Cold-active lipolytic enzymes enable low-temperature biocatalysis, but remain underexplored in Antarctic actinomycetes. Here, we report the discovery and first-step characterization of a CALB-like cold-active lipolytic enzyme (PanLip) from Pseudonocardia antarctica. Sequence and structure analyses revealed a canonical α/β-hydrolase fold with a conserved Ser-Asp-His triad and short helical elements around the pocket reminiscent of CALB's α5/α10 lid. Mature PanLip was expressed primarily as inclusion bodies in E. coli; an N-terminally truncation (PanLipΔN) improved solubility and PanLipΔN was purified by Ni-NTA. Far-UV CD confirmed a folded α/β architecture. PanLipΔN favored short-chain substrates (p-NPA, kcat/KM = 2.4 × 105 M-1·s-1) but also showed measurable hydrolytic activity toward natural triglycerides, consistently with a lipase-family esterase. The enzyme showed an activity optimum near 25 °C and pH 8.0. The enzyme tolerated low salt (maximal at 0.1 M NaCl), mild glycerol, and selected organic solvents (notably n-hexane), but was inhibited by high salt, Triton X-100, and SDS. AlphaFold predicted high local confidence for the catalytic core; DALI placed PanLip closest to fungal lipases (AFLB/CALB). Temperature-series MD and CABS-flex indicated enhanced surface breathing and flexible segments adjacent to the active site-including a region topologically matching CALB α10-supporting a flexibility-assisted access mechanism at low temperature. Structure-based MSAs did not support a cold adaptation role for the reported VDLPGRS motif. Taken together, these findings position PanLip as a promising cold-active catalyst with CALB-like access control and potential for low-temperature biocatalysis.
{"title":"A CALB-like Cold-Active Lipolytic Enzyme from <i>Pseudonocardia antarctica</i>: Expression, Biochemical Characterization, and AlphaFold-Guided Dynamics.","authors":"Lixiao Liu, Hackwon Do, Jong-Oh Kim, Jun Hyuck Lee, Hak Jun Kim","doi":"10.3390/md23120480","DOIUrl":"10.3390/md23120480","url":null,"abstract":"<p><p>Cold-active lipolytic enzymes enable low-temperature biocatalysis, but remain underexplored in Antarctic actinomycetes. Here, we report the discovery and first-step characterization of a CALB-like cold-active lipolytic enzyme (PanLip) from <i>Pseudonocardia antarctica</i>. Sequence and structure analyses revealed a canonical α/β-hydrolase fold with a conserved Ser-Asp-His triad and short helical elements around the pocket reminiscent of CALB's α5/α10 lid. Mature PanLip was expressed primarily as inclusion bodies in <i>E. coli</i>; an N-terminally truncation (PanLipΔN) improved solubility and PanLipΔN was purified by Ni-NTA. Far-UV CD confirmed a folded α/β architecture. PanLipΔN favored short-chain substrates (<i>p</i>-NPA, <i>k</i><sub>cat</sub>/<i>K</i><sub>M</sub> = 2.4 × 10<sup>5</sup> M<sup>-1</sup>·s<sup>-1</sup>) but also showed measurable hydrolytic activity toward natural triglycerides, consistently with a lipase-family esterase. The enzyme showed an activity optimum near 25 °C and pH 8.0. The enzyme tolerated low salt (maximal at 0.1 M NaCl), mild glycerol, and selected organic solvents (notably n-hexane), but was inhibited by high salt, Triton X-100, and SDS. AlphaFold predicted high local confidence for the catalytic core; DALI placed PanLip closest to fungal lipases (AFLB/CALB). Temperature-series MD and CABS-flex indicated enhanced surface breathing and flexible segments adjacent to the active site-including a region topologically matching CALB α10-supporting a flexibility-assisted access mechanism at low temperature. Structure-based MSAs did not support a cold adaptation role for the reported VDLPGRS motif. Taken together, these findings position PanLip as a promising cold-active catalyst with CALB-like access control and potential for low-temperature biocatalysis.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734981/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819945","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}