首页 > 最新文献

Marine Drugs最新文献

英文 中文
Exploring the Microbial Reservoir of Geodia cydonium (Linnaeus, 1767): Insights into Site-Specific Diversity and Biotechnological Potential. Geodia cydonium (Linnaeus, 1767)微生物储层的探索:对特定位点多样性和生物技术潜力的见解。
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-19 DOI: 10.3390/md24010002
Roberta Esposito, Roberta Trani, Marco Bertolino, Michele Sonnessa, Gaia Laurenzi, Valerio Zupo, Caterina Longo, Maria Costantini

Marine sponges are recognized as reservoirs of diverse microorganisms that produce bioactive natural compounds. In this study, we conducted a metataxonomic analysis of Geodia cydonium specimens collected from four sites in Italy: Secca delle Fumose (Gulf of Naples, Tyrrhenian Sea), Mar Piccolo of Taranto and an Integrated Multi-Trophic Aquaculture (IMTA) system in Mar Grande of Taranto (both located in the Ionian Sea), and Polignano a Mare (Adriatic Sea). Our results revealed a highly diverse microbial community within the sponges, encompassing 24 bacterial phyla. Among these, Chloroflexota was the most abundant phylum, accounting for an average of 30.2% of the total community across all samples. In addition, the majority of the microbiota was composed of Actinomycetota, Proteobacteria, Acidobacteriota, Poribacteriota, Gemmatimonadota, and Dadabacteria. The sponge sample from Polignano a Mare exhibited the richest and most diverse bacterial community. This observation was supported by phylogenetic analysis, which identified seven bacterial genera, Albidovulum, Filomicrobium, Microtrix, Gaiellales, D90 (Gammaproteobacteria class), and Blastopirellula, exclusive to this site. Several of these taxa are known for their potential biotechnological applications, underlining the significance of site-specific microbial diversity in G. cydonium.

海洋海绵被认为是产生生物活性天然化合物的各种微生物的储存库。本研究对意大利第勒尼安海那不勒斯湾Secca delle Fumose、塔兰托Mar Piccolo、塔兰托Mar Grande(均位于爱奥尼亚海)和Polignano a Mare(亚得里亚海)四个地点采集的cydonium Geodia标本进行了元分类学分析。我们的研究结果揭示了海绵中高度多样化的微生物群落,包括24个细菌门。其中氯氟藻门数量最多,平均占总群落的30.2%。此外,大部分微生物群由放线菌门、变形菌门、酸性菌门、Poribacteriota、Gemmatimonadota和dadabobacteria组成。海绵样品中细菌群落最丰富、种类最多。系统发育分析支持了这一观察结果,鉴定出该地点特有的7个细菌属:Albidovulum、Filomicrobium、Microtrix、Gaiellales、D90 (Gammaproteobacteria类)和Blastopirellula。这些分类群中有几个因其潜在的生物技术应用而闻名,强调了在cydonium中特定地点的微生物多样性的重要性。
{"title":"Exploring the Microbial Reservoir of <i>Geodia cydonium</i> (Linnaeus, 1767): Insights into Site-Specific Diversity and Biotechnological Potential.","authors":"Roberta Esposito, Roberta Trani, Marco Bertolino, Michele Sonnessa, Gaia Laurenzi, Valerio Zupo, Caterina Longo, Maria Costantini","doi":"10.3390/md24010002","DOIUrl":"10.3390/md24010002","url":null,"abstract":"<p><p>Marine sponges are recognized as reservoirs of diverse microorganisms that produce bioactive natural compounds. In this study, we conducted a metataxonomic analysis of <i>Geodia cydonium</i> specimens collected from four sites in Italy: Secca delle Fumose (Gulf of Naples, Tyrrhenian Sea), Mar Piccolo of Taranto and an Integrated Multi-Trophic Aquaculture (IMTA) system in Mar Grande of Taranto (both located in the Ionian Sea), and Polignano a Mare (Adriatic Sea). Our results revealed a highly diverse microbial community within the sponges, encompassing 24 bacterial phyla. Among these, Chloroflexota was the most abundant phylum, accounting for an average of 30.2% of the total community across all samples. In addition, the majority of the microbiota was composed of Actinomycetota, Proteobacteria, Acidobacteriota, Poribacteriota, Gemmatimonadota, and Dadabacteria. The sponge sample from Polignano a Mare exhibited the richest and most diverse bacterial community. This observation was supported by phylogenetic analysis, which identified seven bacterial genera, <i>Albidovulum</i>, <i>Filomicrobium</i>, <i>Microtrix</i>, <i>Gaiellales</i>, <i>D90</i> (Gammaproteobacteria class), and <i>Blastopirellula</i>, exclusive to this site. Several of these taxa are known for their potential biotechnological applications, underlining the significance of site-specific microbial diversity in <i>G. cydonium</i>.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"24 1","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12842704/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146052744","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ly6/uPAR Protein from Asterias rubens Starfish Stimulates Migration and Invasion of Human Epithelial and Immune Cells. 星形海星Ly6/uPAR蛋白对人上皮和免疫细胞迁移和侵袭的刺激作用
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-19 DOI: 10.3390/md24010003
Ekaterina N Lyukmanova, Tamara Y Gornostaeva, Sergey V Shabelnikov, Zakhar O Shenkarev, Mikhail P Kirpichnikov, Alexander S Paramonov, Maxim L Bychkov

Recently, we found that Lystar5 protein from coelomic cells of A. rubens starfish interacts with nicotinic acetylcholine receptors (nAChRs) and integrin α8-like protein. We hypothesized that Lystar5 mediates detachment of coelomic cells from the matrix and their migration. Skin wound healing in humans is based on keratinocytes migration and is regulated by nAChRs and integrins. Here, we revealed that Lystar5 stimulates migration of human skin HaCaT keratinocytes and peripheral blood monocytes. Using ELISA, we found that Lystar5 binds to the membrane fraction of coelomic cells with its loops I and II, which form an active site of Lystar5 and resemble its pro-migratory activity. In keratinocytes and monocytes, Lystar5 and the peptides mimicking its loops I and II bound with α3, α4, and β2 nAChR and α5, αV, and β1 integrin subunits, which form molecular complexes. In keratinocytes, Lystar5 and its mimetics promoted short-term E/N cadherin switch and upregulated expression of α5 and αV integrins, EGFR, and ICAM-1. In keratinocytes and monocytes, Lystar5 and its mimetics upregulated E-selectin secretion. The ability of Lystar5 and its mimetics to stimulate skin keratinocyte migration and immune cell infiltration may be considered promising for the development of new wound-healing agents.

近年来,研究人员发现黄星体腔细胞中的Lystar5蛋白与烟碱乙酰胆碱受体(nAChRs)和整合素α8样蛋白相互作用。我们假设Lystar5介导体腔细胞脱离基质及其迁移。人类皮肤伤口愈合是基于角质形成细胞的迁移,并受nachr和整合素的调节。在这里,我们发现Lystar5刺激人皮肤HaCaT角质形成细胞和外周血单核细胞的迁移。通过ELISA,我们发现Lystar5通过其环I和环II结合到体腔细胞的膜部分,形成了Lystar5的活性位点,与其促迁移活性相似。在角质形成细胞和单核细胞中,Lystar5和模拟其环I和II的肽与α3、α4和β2 nAChR以及α5、αV和β1整合素亚基结合,形成分子复合物。在角质形成细胞中,Lystar5及其模拟物促进短期E/N钙粘蛋白转换,上调α5和αV整合素、EGFR和ICAM-1的表达。在角质形成细胞和单核细胞中,Lystar5及其模拟物上调e -选择素的分泌。Lystar5及其模拟物刺激皮肤角质细胞迁移和免疫细胞浸润的能力可能被认为是开发新的伤口愈合剂的前景。
{"title":"Ly6/uPAR Protein from <i>Asterias rubens</i> Starfish Stimulates Migration and Invasion of Human Epithelial and Immune Cells.","authors":"Ekaterina N Lyukmanova, Tamara Y Gornostaeva, Sergey V Shabelnikov, Zakhar O Shenkarev, Mikhail P Kirpichnikov, Alexander S Paramonov, Maxim L Bychkov","doi":"10.3390/md24010003","DOIUrl":"10.3390/md24010003","url":null,"abstract":"<p><p>Recently, we found that Lystar5 protein from coelomic cells of <i>A. rubens</i> starfish interacts with nicotinic acetylcholine receptors (nAChRs) and integrin α8-like protein. We hypothesized that Lystar5 mediates detachment of coelomic cells from the matrix and their migration. Skin wound healing in humans is based on keratinocytes migration and is regulated by nAChRs and integrins. Here, we revealed that Lystar5 stimulates migration of human skin HaCaT keratinocytes and peripheral blood monocytes. Using ELISA, we found that Lystar5 binds to the membrane fraction of coelomic cells with its loops I and II, which form an active site of Lystar5 and resemble its pro-migratory activity. In keratinocytes and monocytes, Lystar5 and the peptides mimicking its loops I and II bound with α3, α4, and β2 nAChR and α5, αV, and β1 integrin subunits, which form molecular complexes. In keratinocytes, Lystar5 and its mimetics promoted short-term E/N cadherin switch and upregulated expression of α5 and αV integrins, EGFR, and ICAM-1. In keratinocytes and monocytes, Lystar5 and its mimetics upregulated E-selectin secretion. The ability of Lystar5 and its mimetics to stimulate skin keratinocyte migration and immune cell infiltration may be considered promising for the development of new wound-healing agents.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"24 1","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12843386/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146052767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRISPR-Cas Technology Turns Chlamydomonas reinhardtii into a Flagship for Algal Biotechnology. CRISPR-Cas技术使莱茵衣藻成为藻类生物技术的旗舰。
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-19 DOI: 10.3390/md24010001
Amina Antonacci, Annalisa Masi, Vincenzo Vedi, Sara Colella, Federica Musella, Gabriella Fiorentino, Viviana Scognamiglio

Microalgae represent some of the most promising eukaryotic platforms in biotechnology due to their rapid growth, simple cultivation requirements, reliance on sunlight as a primary energy source, and ability to synthesize high-value bioactive compounds. These characteristics have made microalgae attractive candidates in various fields, including biofuel production, carbon capture, and pharmaceutical development. However, several technical limitations have limited their large-scale use as sustainable biofactories. A paradigm shift is currently occurring thanks to the genetic manipulation of microalgae, driven by CRISPR-Cas technology. Significant progress has been made in the model species Chlamydomonas reinhardtii, particularly in the targeted and efficient insertion of foreign DNA. Despite this progress, key challenges remain, and further optimization of CRISPR-Cas methodologies is needed to fully unleash the genetic potential of this organism. This review provides an overview of the convergence of CRISPR-Cas technologies in microalgae research, highlighting their impact on genetic studies, metabolic engineering, and industrial applications. It summarizes recent advances in microalgal genome editing through CRISPR systems, outlines current technical challenges, and highlights future directions for improving the implementation of this innovative technology in microalgal biotechnology.

微藻生长迅速,培养要求简单,依赖阳光作为主要能源,能够合成高价值的生物活性化合物,是生物技术中最有前途的真核生物平台之一。这些特点使得微藻在生物燃料生产、碳捕获和药物开发等各个领域具有吸引力。然而,一些技术限制限制了它们作为可持续生物工厂的大规模使用。由于由CRISPR-Cas技术驱动的微藻基因操作,目前正在发生范式转变。模式物种莱茵衣藻(Chlamydomonas reinhardtii)的研究取得了重大进展,特别是在靶向和有效插入外源DNA方面。尽管取得了这些进展,关键的挑战仍然存在,需要进一步优化CRISPR-Cas方法,以充分释放这种生物的遗传潜力。本文综述了CRISPR-Cas技术在微藻研究中的融合,重点介绍了它们在遗传研究、代谢工程和工业应用方面的影响。它总结了利用CRISPR系统进行微藻基因组编辑的最新进展,概述了当前的技术挑战,并强调了在微藻生物技术中改进这一创新技术实施的未来方向。
{"title":"CRISPR-Cas Technology Turns <i>Chlamydomonas reinhardtii</i> into a Flagship for Algal Biotechnology.","authors":"Amina Antonacci, Annalisa Masi, Vincenzo Vedi, Sara Colella, Federica Musella, Gabriella Fiorentino, Viviana Scognamiglio","doi":"10.3390/md24010001","DOIUrl":"10.3390/md24010001","url":null,"abstract":"<p><p>Microalgae represent some of the most promising eukaryotic platforms in biotechnology due to their rapid growth, simple cultivation requirements, reliance on sunlight as a primary energy source, and ability to synthesize high-value bioactive compounds. These characteristics have made microalgae attractive candidates in various fields, including biofuel production, carbon capture, and pharmaceutical development. However, several technical limitations have limited their large-scale use as sustainable biofactories. A paradigm shift is currently occurring thanks to the genetic manipulation of microalgae, driven by CRISPR-Cas technology. Significant progress has been made in the model species <i>Chlamydomonas reinhardtii</i>, particularly in the targeted and efficient insertion of foreign DNA. Despite this progress, key challenges remain, and further optimization of CRISPR-Cas methodologies is needed to fully unleash the genetic potential of this organism. This review provides an overview of the convergence of CRISPR-Cas technologies in microalgae research, highlighting their impact on genetic studies, metabolic engineering, and industrial applications. It summarizes recent advances in microalgal genome editing through CRISPR systems, outlines current technical challenges, and highlights future directions for improving the implementation of this innovative technology in microalgal biotechnology.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"24 1","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12842831/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146052699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Oyster Peptides Prepared by Lactobacillus casei Fermentation Enhance Immune Activity in RAW264.7 Cells via Activation of the MAPK Pathway. 干酪乳杆菌发酵制备的牡蛎肽通过激活MAPK通路增强RAW264.7细胞的免疫活性
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-18 DOI: 10.3390/md23120484
Lingyue Zhong, Yirui Wu, Xuefang Guan, Mei Xu, Juqing Huang, Yafeng Zheng, Qi Wang

Oyster peptides (OPs) have gained increasing attention for their excellent biological activities, especially immunomodulatory effects. In this study, oyster proteins were fermented using Lactobacillus casei to prepare bioactive peptides, and the effects of fermentation parameters (time, temperature, and inoculum amount) on the degree of hydrolysis (DH) were optimized. The optimal fermentation conditions were determined as 30 h, 35 °C, and 5% inoculum amount, resulting in a DH of 28.24%. Structural characterization showed that OPs were mainly composed of low-molecular-weight peptides (<1000 Da) with high hydrophobic amino acid content, and they exhibited good stability during in vitro gastrointestinal digestion. In vitro immunological evaluation using RAW264.7 macrophages demonstrated that OPs significantly enhanced phagocytic activity and nitric oxide (NO) production, and upregulated the mRNA expression levels of pro-inflammatory cytokines including interleukin (IL)-6, IL-1β, and tumor necrosis factor (TNF)-α. Mechanistically, OPs exerted immunostimulatory effects by specifically activating the extracellular signal-regulated kinase (ERK) pathway within the mitogen-activated protein kinase (MAPK) signaling cascade, without significant alterations in the phosphorylation levels of p38 and c-Jun N-terminal kinase (JNK). These findings highlight the potential of Lactobacillus casei-fermented oyster peptides as natural immunomodulatory ingredients for functional food development.

牡蛎肽因其优异的生物活性,尤其是免疫调节作用而受到越来越多的关注。本研究利用干酪乳杆菌对牡蛎蛋白进行发酵,制备生物活性肽,并优化发酵参数(时间、温度、接种量)对水解度(DH)的影响。最佳发酵条件为30 h、35℃、5%接种量,DH为28.24%。结构表征表明,OPs主要由低分子量肽(干酪乳杆菌-发酵牡蛎肽)组成,可作为功能性食品开发的天然免疫调节成分。
{"title":"Oyster Peptides Prepared by <i>Lactobacillus casei</i> Fermentation Enhance Immune Activity in RAW264.7 Cells via Activation of the MAPK Pathway.","authors":"Lingyue Zhong, Yirui Wu, Xuefang Guan, Mei Xu, Juqing Huang, Yafeng Zheng, Qi Wang","doi":"10.3390/md23120484","DOIUrl":"10.3390/md23120484","url":null,"abstract":"<p><p>Oyster peptides (OPs) have gained increasing attention for their excellent biological activities, especially immunomodulatory effects. In this study, oyster proteins were fermented using <i>Lactobacillus casei</i> to prepare bioactive peptides, and the effects of fermentation parameters (time, temperature, and inoculum amount) on the degree of hydrolysis (DH) were optimized. The optimal fermentation conditions were determined as 30 h, 35 °C, and 5% inoculum amount, resulting in a DH of 28.24%. Structural characterization showed that OPs were mainly composed of low-molecular-weight peptides (<1000 Da) with high hydrophobic amino acid content, and they exhibited good stability during in vitro gastrointestinal digestion. In vitro immunological evaluation using RAW264.7 macrophages demonstrated that OPs significantly enhanced phagocytic activity and nitric oxide (NO) production, and upregulated the mRNA expression levels of pro-inflammatory cytokines including interleukin (IL)-6, IL-1β, and tumor necrosis factor (TNF)-α. Mechanistically, OPs exerted immunostimulatory effects by specifically activating the extracellular signal-regulated kinase (ERK) pathway within the mitogen-activated protein kinase (MAPK) signaling cascade, without significant alterations in the phosphorylation levels of p38 and c-Jun N-terminal kinase (JNK). These findings highlight the potential of <i>Lactobacillus casei</i>-fermented oyster peptides as natural immunomodulatory ingredients for functional food development.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734967/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145820001","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Astaxanthin from Haematococcus pluvialis and Chromochloris zofingiensis: Biosynthetic Pathways, Engineering Strategies, and Industrial Prospects. 雨红球藻和佐青绿球藻的虾青素:生物合成途径、工程策略和工业前景。
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-18 DOI: 10.3390/md23120485
Shufang Yang, Xue Lu, Jia Wang, Ye Liu, Man Nie, Jin Liu, Han Sun

Astaxanthin, a high-value keto-carotenoid with potent antioxidant and health-promoting properties, has gained global attention as a sustainable nutraceutical and biotechnological product. The green microalgae Haematococcus pluvialis and Chromochloris zofingiensis represent two promising natural producers, yet they differ markedly in physiology, productivity, and industrial scalability. This review provides a focused comparative analysis of these two species, emphasizing their quantitative performance differences. H. pluvialis can accumulate astaxanthin up to ~3-5% of dry biomass but typically reaches biomass densities of only 5-10 g L-1, whereas C. zofingiensis achieves ultrahigh biomass concentrations of 100-220 g L-1 under heterotrophic fed-batch fermentation, although its astaxanthin content is much lower (~0.1-0.5% DW). While H. pluvialis remains the benchmark for natural astaxanthin due to its exceptionally high cellular content, its thick cell wall, slow growth, and strict phototrophic requirements impose major cost and operational barriers. In contrast, C. zofingiensis exhibits rapid and flexible growth under heterotrophic, mixotrophic, or phototrophic conditions and can achieve ultrahigh biomass in fermentation, though its ketocarotenoid flux and astaxanthin accumulation remain comparatively limited. Meanwhile, a rapidly growing patent landscape demonstrates global technological competition, with major portfolios emerging in China, the United States, and Europe, spanning chemical synthesis, microbial fermentation, algal metabolic engineering, and high-density cultivation methods. These patents reveal clear innovation trends-ranging from solvent-free green synthesis routes to engineered microalgae and yeast chassis for enhanced astaxanthin production-which increasingly shape industrial development strategies. By synthesizing recent advances in metabolic engineering, two-stage cultivation, and green extraction technologies, this review identifies key knowledge gaps and outlines a practical roadmap for developing next-generation astaxanthin biorefineries, with an emphasis on scalable production and future integration into broader biorefinery frameworks. The findings aim to guide future research and provide actionable insights for scaling sustainable, cost-effective production of natural astaxanthin.

虾青素是一种高价值的类酮胡萝卜素,具有有效的抗氧化和促进健康的特性,作为一种可持续的营养保健和生物技术产品受到了全球的关注。绿色微藻雨红球藻和佐银绿球藻是两种很有前途的天然藻类,但它们在生理、生产力和工业可扩展性方面存在显著差异。本文综述了这两个物种的比较分析,强调了它们的定量性能差异。雨芽草(H. pluvialis)的虾青素积累量可达干生物量的~3-5%,但生物量密度通常仅为5-10 g L-1,而异养分批补料发酵的紫芽草(C. zoofingiensis)的虾青素含量要低得多(~0.1-0.5% DW),但其生物量浓度却高达100-220 g L-1。虽然由于其异常高的细胞含量,雨芽虾仍然是天然虾青素的基准,但其细胞壁厚、生长缓慢和严格的光养要求造成了主要的成本和操作障碍。相比之下,C. zofingiensis在异养、混合营养或光养条件下均表现出快速灵活的生长,在发酵过程中可以实现超高的生物量,但其类酮胡萝卜素通量和虾青素积累相对有限。与此同时,快速增长的专利格局显示了全球技术竞争,主要投资组合出现在中国、美国和欧洲,涵盖化学合成、微生物发酵、藻类代谢工程和高密度培养方法。这些专利揭示了清晰的创新趋势——从无溶剂的绿色合成路线到用于增强虾青素生产的工程微藻和酵母底盘——它们日益影响着工业发展战略。通过综合代谢工程、两阶段培养和绿色提取技术的最新进展,本文确定了关键的知识空白,并概述了开发下一代虾青素生物炼制的实用路线图,重点是可扩展生产和未来整合到更广泛的生物炼制框架中。这些发现旨在指导未来的研究,并为规模化、可持续、具有成本效益的天然虾青素生产提供可操作的见解。
{"title":"Astaxanthin from <i>Haematococcus pluvialis</i> and <i>Chromochloris zofingiensis</i>: Biosynthetic Pathways, Engineering Strategies, and Industrial Prospects.","authors":"Shufang Yang, Xue Lu, Jia Wang, Ye Liu, Man Nie, Jin Liu, Han Sun","doi":"10.3390/md23120485","DOIUrl":"10.3390/md23120485","url":null,"abstract":"<p><p>Astaxanthin, a high-value keto-carotenoid with potent antioxidant and health-promoting properties, has gained global attention as a sustainable nutraceutical and biotechnological product. The green microalgae <i>Haematococcus pluvialis</i> and <i>Chromochloris zofingiensis</i> represent two promising natural producers, yet they differ markedly in physiology, productivity, and industrial scalability. This review provides a focused comparative analysis of these two species, emphasizing their quantitative performance differences. <i>H. pluvialis</i> can accumulate astaxanthin up to ~3-5% of dry biomass but typically reaches biomass densities of only 5-10 g L<sup>-1</sup>, whereas <i>C. zofingiensis</i> achieves ultrahigh biomass concentrations of 100-220 g L<sup>-1</sup> under heterotrophic fed-batch fermentation, although its astaxanthin content is much lower (~0.1-0.5% DW). While <i>H. pluvialis</i> remains the benchmark for natural astaxanthin due to its exceptionally high cellular content, its thick cell wall, slow growth, and strict phototrophic requirements impose major cost and operational barriers. In contrast, <i>C. zofingiensis</i> exhibits rapid and flexible growth under heterotrophic, mixotrophic, or phototrophic conditions and can achieve ultrahigh biomass in fermentation, though its ketocarotenoid flux and astaxanthin accumulation remain comparatively limited. Meanwhile, a rapidly growing patent landscape demonstrates global technological competition, with major portfolios emerging in China, the United States, and Europe, spanning chemical synthesis, microbial fermentation, algal metabolic engineering, and high-density cultivation methods. These patents reveal clear innovation trends-ranging from solvent-free green synthesis routes to engineered microalgae and yeast chassis for enhanced astaxanthin production-which increasingly shape industrial development strategies. By synthesizing recent advances in metabolic engineering, two-stage cultivation, and green extraction technologies, this review identifies key knowledge gaps and outlines a practical roadmap for developing next-generation astaxanthin biorefineries, with an emphasis on scalable production and future integration into broader biorefinery frameworks. The findings aim to guide future research and provide actionable insights for scaling sustainable, cost-effective production of natural astaxanthin.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734979/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Precision-Engineered Dermatan Sulfate-Mimetic Glycopolymers for Multi-Targeted SARS-CoV-2 Inhibition. 多靶点抑制SARS-CoV-2的精密工程皮肤硫酸盐模拟糖共聚物
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-18 DOI: 10.3390/md23120486
Lihao Wang, Lei Gao, Chendong Yang, Mengfei Yin, Jiqin Sun, Luyao Yang, Chanjuan Liu, Simon F R Hinkley, Guangli Yu, Chao Cai

The ongoing COVID-19 pandemic, caused by SARS-CoV-2, continues to pose major global health challenges despite extensive vaccination efforts. Variant escape, waning immunity, and reduced vaccine efficacy in immunocompromised populations underscore the urgent need for complementary antiviral therapeutics. Here, we report the design, synthesis, and biological evaluation of precision-engineered dermatan sulfate (DS)-mimetic glycopolymers as multi-targeted inhibitors of SARS-CoV-2. Guided by molecular docking and virtual screening, sulfation at the C2 and C4 positions of iduronic acid was identified as critical for binding to the viral spike protein and inhibiting host and viral enzymes, including heparanase (HPSE) and main protease (Mpro). Chemically synthesized DS disaccharides were covalently grafted onto polymer scaffolds via a post-modification strategy, yielding glycopolymers with well-defined assembly that form uniform nanoparticles under physiological conditions. Surface plasmon resonance and pseudovirus assays revealed strong binding to the viral spike protein (KD ≈ 177 nM), potent viral neutralization, and minimal cytotoxicity. Cellular uptake studies further demonstrated efficient internalization of nanoparticles and intracellular inhibition of HPSE and Mpro. These results establish a modular, non-anticoagulant, and glycosaminoglycan-mimetic platform for the development of broad-spectrum antiviral agents to complement vaccination and enhance preparedness against emerging coronavirus variants.

尽管开展了广泛的疫苗接种工作,但目前由SARS-CoV-2引起的COVID-19大流行仍在继续构成重大的全球卫生挑战。在免疫功能低下的人群中,变异逃逸、免疫力下降和疫苗效力降低强调了对补充抗病毒治疗的迫切需要。在这里,我们报道了精密工程硫酸皮肤聚糖(DS)-模拟糖共聚物作为SARS-CoV-2多靶点抑制剂的设计、合成和生物学评价。在分子对接和虚拟筛选的指导下,确定了在伊杜醛酸C2和C4位置的硫酸化是与病毒刺突蛋白结合并抑制宿主和病毒酶(包括肝素酶(HPSE)和主蛋白酶(Mpro))的关键。化学合成的DS双糖通过后修饰策略共价接枝到聚合物支架上,得到具有明确组装的糖共聚物,在生理条件下形成均匀的纳米颗粒。表面等离子体共振和假病毒实验显示,与病毒刺突蛋白(KD≈177 nM)结合强,病毒中和作用强,细胞毒性小。细胞摄取研究进一步证明了纳米颗粒的有效内化和细胞内抑制HPSE和Mpro。这些结果为开发广谱抗病毒药物建立了模块化、非抗凝血和模拟糖胺聚糖的平台,以补充疫苗接种并加强对新出现的冠状病毒变体的准备。
{"title":"Precision-Engineered Dermatan Sulfate-Mimetic Glycopolymers for Multi-Targeted SARS-CoV-2 Inhibition.","authors":"Lihao Wang, Lei Gao, Chendong Yang, Mengfei Yin, Jiqin Sun, Luyao Yang, Chanjuan Liu, Simon F R Hinkley, Guangli Yu, Chao Cai","doi":"10.3390/md23120486","DOIUrl":"10.3390/md23120486","url":null,"abstract":"<p><p>The ongoing COVID-19 pandemic, caused by SARS-CoV-2, continues to pose major global health challenges despite extensive vaccination efforts. Variant escape, waning immunity, and reduced vaccine efficacy in immunocompromised populations underscore the urgent need for complementary antiviral therapeutics. Here, we report the design, synthesis, and biological evaluation of precision-engineered dermatan sulfate (DS)-mimetic glycopolymers as multi-targeted inhibitors of SARS-CoV-2. Guided by molecular docking and virtual screening, sulfation at the C2 and C4 positions of iduronic acid was identified as critical for binding to the viral spike protein and inhibiting host and viral enzymes, including heparanase (HPSE) and main protease (M<sup>pro</sup>). Chemically synthesized DS disaccharides were covalently grafted onto polymer scaffolds via a post-modification strategy, yielding glycopolymers with well-defined assembly that form uniform nanoparticles under physiological conditions. Surface plasmon resonance and pseudovirus assays revealed strong binding to the viral spike protein (K<i><sub>D</sub></i> ≈ 177 nM), potent viral neutralization, and minimal cytotoxicity. Cellular uptake studies further demonstrated efficient internalization of nanoparticles and intracellular inhibition of HPSE and M<sup>pro</sup>. These results establish a modular, non-anticoagulant, and glycosaminoglycan-mimetic platform for the development of broad-spectrum antiviral agents to complement vaccination and enhance preparedness against emerging coronavirus variants.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734876/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145820073","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biomass Growth and Fatty Acid Production by the Marine Thraustochytrium sp. RT2316-16 in Chemically Defined Media. 海洋Thraustochytrium sp. RT2316-16在化学定义介质中的生物量生长和脂肪酸生产。
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-17 DOI: 10.3390/md23120482
Liset Flores, María Paz Lefiguala, Carolina Shene

The biomass and lipid production responses of the psychrophilic marine thraustochytrid Thraustochytrium sp. RT2316-16 were assessed in chemically defined media comprising glucose, up to 17 amino acids and up to 9 B-vitamins and mineral salts. Compared to the control medium with all amino acids and B-vitamins (biomass concentration: 7.1 ± 0.1 g L-1; total lipid content: 30.4 ± 0.5% of the DW), the growth of RT2316-16 was reduced by more than 50% in the medium that lacked cyanocobalamin or pyridoxamine. The total lipid content of the biomass grown in the absence of vitamins was 63% lower than in the biomass produced in the control medium. The composition of the B-vitamin mixture modulated the fatty acid composition, an effect that may have been related to the availability of dissolved oxygen. In bioreactor culture with the dissolved oxygen level controlled to ≥10% of air saturation, the microorganism consumed all 17 amino acids; 8 of the amino acids were fully consumed within a 0-33 h period, in which the specific growth rate was 0.065 h-1. Under these culture conditions, the sum of eicosapentaenoic acid and docosahexaenoic acid in the total fatty acid content rose from 15% (at time 0) to 54% (after 95 h). A medium that contained the 9 amino acids that were not preferentially consumed favored the accumulation of total lipids, but reduced biomass growth.

在由葡萄糖、多达17种氨基酸、多达9种b族维生素和矿物盐组成的化学定义培养基中,研究了嗜冷性海洋Thraustochytrium sp. RT2316-16的生物量和脂质生产反应。与添加所有氨基酸和b族维生素的对照培养基(生物量浓度为7.1±0.1 g L-1,总脂质含量为DW的30.4±0.5%)相比,RT2316-16在缺乏氰钴胺素或吡哆胺的培养基中生长降低了50%以上。在没有维生素的培养基中生长的生物量的总脂含量比在对照培养基中生产的生物量低63%。b族维生素混合物的组成调节了脂肪酸的组成,这种作用可能与溶解氧的可用性有关。在溶解氧水平控制在空气饱和度≥10%的生物反应器培养中,微生物消耗了全部17种氨基酸;其中8种氨基酸在0 ~ 33 h内被完全消耗,比生长率为0.065 h-1。在此培养条件下,二十碳五烯酸和二十二碳六烯酸在总脂肪酸含量中的总和从0时的15%上升到95 h后的54%。含有未被优先消耗的9种氨基酸的培养基有利于总脂质的积累,但降低了生物量的增长。
{"title":"Biomass Growth and Fatty Acid Production by the Marine <i>Thraustochytrium</i> sp. RT2316-16 in Chemically Defined Media.","authors":"Liset Flores, María Paz Lefiguala, Carolina Shene","doi":"10.3390/md23120482","DOIUrl":"10.3390/md23120482","url":null,"abstract":"<p><p>The biomass and lipid production responses of the psychrophilic marine thraustochytrid <i>Thraustochytrium</i> sp. RT2316-16 were assessed in chemically defined media comprising glucose, up to 17 amino acids and up to 9 B-vitamins and mineral salts. Compared to the control medium with all amino acids and B-vitamins (biomass concentration: 7.1 ± 0.1 g L<sup>-1</sup>; total lipid content: 30.4 ± 0.5% of the DW), the growth of RT2316-16 was reduced by more than 50% in the medium that lacked cyanocobalamin or pyridoxamine. The total lipid content of the biomass grown in the absence of vitamins was 63% lower than in the biomass produced in the control medium. The composition of the B-vitamin mixture modulated the fatty acid composition, an effect that may have been related to the availability of dissolved oxygen. In bioreactor culture with the dissolved oxygen level controlled to ≥10% of air saturation, the microorganism consumed all 17 amino acids; 8 of the amino acids were fully consumed within a 0-33 h period, in which the specific growth rate was 0.065 h<sup>-1</sup>. Under these culture conditions, the sum of eicosapentaenoic acid and docosahexaenoic acid in the total fatty acid content rose from 15% (at time 0) to 54% (after 95 h). A medium that contained the 9 amino acids that were not preferentially consumed favored the accumulation of total lipids, but reduced biomass growth.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734794/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Marine-Derived Terpenes: Chemistry, Synthesis and Their Therapeutic Potential. 海洋衍生萜烯:化学、合成及其治疗潜力。
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-17 DOI: 10.3390/md23120483
Jinmei Xia

The past five years have marked a significant evolution in terpenoid natural product research, with direct implications for marine drug discovery [...].

过去五年标志着萜类天然产物研究取得了重大进展,对海洋药物的发现具有直接影响[…]。
{"title":"Marine-Derived Terpenes: Chemistry, Synthesis and Their Therapeutic Potential.","authors":"Jinmei Xia","doi":"10.3390/md23120483","DOIUrl":"10.3390/md23120483","url":null,"abstract":"<p><p>The past five years have marked a significant evolution in terpenoid natural product research, with direct implications for marine drug discovery [...].</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734945/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145820050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Induction of Apoptotic Cell Death in Non-Small-Cell Lung Cancer Cells by MP28 Peptide Derived from Bryopsis plumosa. 毛羽苔藓MP28肽诱导非小细胞肺癌细胞凋亡的研究
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-17 DOI: 10.3390/md23120481
Heabin Kim, Seung-Hyun Jung, Seonmi Jo, Jong Won Han, Jei Ha Lee

Marine algae are a prolific bioactive peptide source with a broad pharmacological potential. We characterized MP28, a cationic peptide isolated from the green alga Bryopsis plumosa. Structural modeling indicated a predominantly amphipathic α-helix (residues 3-16) flanked by flexible termini and stabilized by intramolecular disulfide bonds, a motif typical of membrane-active anticancer peptides. Functionally, MP28 demonstrated potent activity against non-small-cell lung cancer cell lines (A549, H460, H1299) without affecting non-tumorigenic lung fibroblasts (MRC-5). In vitro, MP28 decreased cell viability and clonogenic growth and suppressed migration and invasion in a dose-dependent manner. Flow cytometry revealed increased early/late apoptotic fractions, accompanied by caspase-9 activation, consistent with engagement of the intrinsic apoptotic pathway. In a mouse xenograft model, MP28 treatment significantly reduced tumor size compared with that of controls. Collectively, MP28 may be a potent anticancer peptide that exhibits selective cytotoxicity and low toxicity toward normal cells.

海藻是一种多产的生物活性肽源,具有广泛的药理潜力。我们鉴定了MP28,一种从绿藻Bryopsis plumosa中分离的阳离子肽。结构模型表明,其主要为两亲性α-螺旋(残基3-16),两侧为柔性末端,并由分子内二硫键稳定,这是典型的膜活性抗癌肽基序。在功能上,MP28对非小细胞肺癌细胞系(A549, H460, H1299)具有有效活性,而不影响非致瘤性肺成纤维细胞(MRC-5)。在体外,MP28呈剂量依赖性地降低细胞活力和克隆生长,抑制迁移和侵袭。流式细胞术显示早期/晚期凋亡分数增加,并伴有caspase-9激活,与内在凋亡通路的参与一致。在小鼠异种移植模型中,与对照组相比,MP28治疗显著减小了肿瘤大小。总的来说,MP28可能是一种有效的抗癌肽,对正常细胞具有选择性的细胞毒性和低毒性。
{"title":"Induction of Apoptotic Cell Death in Non-Small-Cell Lung Cancer Cells by MP28 Peptide Derived from <i>Bryopsis plumosa</i>.","authors":"Heabin Kim, Seung-Hyun Jung, Seonmi Jo, Jong Won Han, Jei Ha Lee","doi":"10.3390/md23120481","DOIUrl":"10.3390/md23120481","url":null,"abstract":"<p><p>Marine algae are a prolific bioactive peptide source with a broad pharmacological potential. We characterized MP28, a cationic peptide isolated from the green alga <i>Bryopsis plumosa</i>. Structural modeling indicated a predominantly amphipathic α-helix (residues 3-16) flanked by flexible termini and stabilized by intramolecular disulfide bonds, a motif typical of membrane-active anticancer peptides. Functionally, MP28 demonstrated potent activity against non-small-cell lung cancer cell lines (A549, H460, H1299) without affecting non-tumorigenic lung fibroblasts (MRC-5). In vitro, MP28 decreased cell viability and clonogenic growth and suppressed migration and invasion in a dose-dependent manner. Flow cytometry revealed increased early/late apoptotic fractions, accompanied by caspase-9 activation, consistent with engagement of the intrinsic apoptotic pathway. In a mouse xenograft model, MP28 treatment significantly reduced tumor size compared with that of controls. Collectively, MP28 may be a potent anticancer peptide that exhibits selective cytotoxicity and low toxicity toward normal cells.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734986/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145820044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A CALB-like Cold-Active Lipolytic Enzyme from Pseudonocardia antarctica: Expression, Biochemical Characterization, and AlphaFold-Guided Dynamics. 一种来自南极伪心的calb样冷活性脂溶酶:表达、生化表征和alphafold引导动力学。
IF 5.4 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2025-12-15 DOI: 10.3390/md23120480
Lixiao Liu, Hackwon Do, Jong-Oh Kim, Jun Hyuck Lee, Hak Jun Kim

Cold-active lipolytic enzymes enable low-temperature biocatalysis, but remain underexplored in Antarctic actinomycetes. Here, we report the discovery and first-step characterization of a CALB-like cold-active lipolytic enzyme (PanLip) from Pseudonocardia antarctica. Sequence and structure analyses revealed a canonical α/β-hydrolase fold with a conserved Ser-Asp-His triad and short helical elements around the pocket reminiscent of CALB's α5/α10 lid. Mature PanLip was expressed primarily as inclusion bodies in E. coli; an N-terminally truncation (PanLipΔN) improved solubility and PanLipΔN was purified by Ni-NTA. Far-UV CD confirmed a folded α/β architecture. PanLipΔN favored short-chain substrates (p-NPA, kcat/KM = 2.4 × 105 M-1·s-1) but also showed measurable hydrolytic activity toward natural triglycerides, consistently with a lipase-family esterase. The enzyme showed an activity optimum near 25 °C and pH 8.0. The enzyme tolerated low salt (maximal at 0.1 M NaCl), mild glycerol, and selected organic solvents (notably n-hexane), but was inhibited by high salt, Triton X-100, and SDS. AlphaFold predicted high local confidence for the catalytic core; DALI placed PanLip closest to fungal lipases (AFLB/CALB). Temperature-series MD and CABS-flex indicated enhanced surface breathing and flexible segments adjacent to the active site-including a region topologically matching CALB α10-supporting a flexibility-assisted access mechanism at low temperature. Structure-based MSAs did not support a cold adaptation role for the reported VDLPGRS motif. Taken together, these findings position PanLip as a promising cold-active catalyst with CALB-like access control and potential for low-temperature biocatalysis.

冷活性脂解酶可以实现低温生物催化,但在南极放线菌中仍未得到充分开发。在这里,我们报道了一种calb样冷活性脂溶酶(PanLip)的发现和第一步表征。序列和结构分析显示一个典型的α/β-水解酶折叠,具有保守的Ser-Asp-His三联体和短螺旋元件,围绕在口袋周围,使人联想到CALB的α5/α10盖。成熟的PanLip主要以包涵体形式在大肠杆菌中表达;n端截断(PanLipΔN)提高了溶解度,PanLipΔN被Ni-NTA纯化。远紫外CD证实了α/β折叠结构。PanLipΔN倾向于短链底物(p-NPA, kcat/KM = 2.4 × 105 M-1·s-1),但也显示出可测量的天然甘油三酯水解活性,与脂肪酶家族酯酶一致。该酶在25°C和pH 8.0条件下活性最佳。该酶耐受低盐(最大0.1 M NaCl)、温和的甘油和特定的有机溶剂(特别是正己烷),但被高盐、Triton X-100和SDS抑制。AlphaFold预测催化核心具有较高的局部置信度;DALI将PanLip放置在最接近真菌脂肪酶(AFLB/CALB)的位置。温度系列MD和CABS-flex表明,活性位点附近的表面呼吸和柔性段增强,包括拓扑结构与CALB α10相匹配的区域,支持低温下柔性辅助进入机制。基于结构的msa不支持报道的VDLPGRS motif的冷适应作用。综上所述,这些发现使PanLip成为一种有前途的冷活性催化剂,具有类似calb的访问控制和低温生物催化的潜力。
{"title":"A CALB-like Cold-Active Lipolytic Enzyme from <i>Pseudonocardia antarctica</i>: Expression, Biochemical Characterization, and AlphaFold-Guided Dynamics.","authors":"Lixiao Liu, Hackwon Do, Jong-Oh Kim, Jun Hyuck Lee, Hak Jun Kim","doi":"10.3390/md23120480","DOIUrl":"10.3390/md23120480","url":null,"abstract":"<p><p>Cold-active lipolytic enzymes enable low-temperature biocatalysis, but remain underexplored in Antarctic actinomycetes. Here, we report the discovery and first-step characterization of a CALB-like cold-active lipolytic enzyme (PanLip) from <i>Pseudonocardia antarctica</i>. Sequence and structure analyses revealed a canonical α/β-hydrolase fold with a conserved Ser-Asp-His triad and short helical elements around the pocket reminiscent of CALB's α5/α10 lid. Mature PanLip was expressed primarily as inclusion bodies in <i>E. coli</i>; an N-terminally truncation (PanLipΔN) improved solubility and PanLipΔN was purified by Ni-NTA. Far-UV CD confirmed a folded α/β architecture. PanLipΔN favored short-chain substrates (<i>p</i>-NPA, <i>k</i><sub>cat</sub>/<i>K</i><sub>M</sub> = 2.4 × 10<sup>5</sup> M<sup>-1</sup>·s<sup>-1</sup>) but also showed measurable hydrolytic activity toward natural triglycerides, consistently with a lipase-family esterase. The enzyme showed an activity optimum near 25 °C and pH 8.0. The enzyme tolerated low salt (maximal at 0.1 M NaCl), mild glycerol, and selected organic solvents (notably n-hexane), but was inhibited by high salt, Triton X-100, and SDS. AlphaFold predicted high local confidence for the catalytic core; DALI placed PanLip closest to fungal lipases (AFLB/CALB). Temperature-series MD and CABS-flex indicated enhanced surface breathing and flexible segments adjacent to the active site-including a region topologically matching CALB α10-supporting a flexibility-assisted access mechanism at low temperature. Structure-based MSAs did not support a cold adaptation role for the reported VDLPGRS motif. Taken together, these findings position PanLip as a promising cold-active catalyst with CALB-like access control and potential for low-temperature biocatalysis.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":"23 12","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12734981/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145819945","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Marine Drugs
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1