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Design, Synthesis and Anticonvulsant Activity of Cinnamoyl Derivatives of 3,4,6,7,8,9-hexahydrodibenzo[b,d]furan-1-(2H)-one Oxime. 3,4,6,7,8,9-六氢二苯并[b,d]呋喃-1-(2H)-酮肟的肉桂酰衍生物的设计、合成和抗惊厥活性。
IF 2.3 4区 医学 Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-01-01 DOI: 10.2174/1573406419666230908121759
Grigory V Mokrov, Valentina E Biryukova, Tatiana Y Vorobieva, Andry S Pantileev, Oksana S Grigorkevich, Ludmila A Zhmurenko, Alexey G Rebeko, Felix S Bayburtskiy, Svetlana A Litvinova, Tatiana A Voronina, Tatiana A Gudasheva, Sergei B Seredenin

Background: Epilepsy continues to be a significant global health problem and the search for new drugs for its treatment remains an urgent task. 5-HT2 and GABAA-receptors are among promising biotargets for the search for new anticonvulsants.

Methods: New potential 5-HT2 and GABAA ligands in the series of substituted cinnamoyl derivatives of 3,4,6,7,8,9-hexahydrodibenzo[b,d]furan-1-(2H)-one oxime were designed using pharmacophore model and molecular docking analysis. The synthesis of new compounds was carried out from 3,4,6,7,8,9-hexahydrodibenzo[b,d]furan-1(2H)-one oxime and substituted cinnamoyl chlorides. The anticonvulsant activity of new substances has been established using the maximal electroshock seizure test.

Results: Several synthesized substituted cinnamoyl derivatives of 3,4,6,7,8,9-hexahydrodibenzo [b,d]furan-1-(2H)-one oxime significantly reduced the severity of convulsive manifestations and completely prevented the death of animals after MES. The structure-activity relationship was investigated. The most effective compound was found to be GIZH-348 (1g) (3,4,6,7,8,9-hexahydrodibenzo[ b,d]furan-1(2Н)-one О-(4-chlorophenyl)acryloyl)oxime) at the doses of 10-20 mg/kg.

Conclusion: Molecular and pharmacophore modelling methods allowed us to create a new group of substituted cinnamoyl derivatives of 3,4,6,7,8,9-hexahydrodibenzo[b,d]furan-1-(2H)-one oxime with anticonvulsant activity.

背景:癫痫仍然是一个重大的全球健康问题,寻找治疗癫痫的新药仍然是一项紧迫任务。5-HT2和GABAA受体是寻找新型抗惊厥药物的有希望的生物靶点之一:方法:利用药理模型和分子对接分析设计了 3,4,6,7,8,9-六氢二苯并[b,d]呋喃-1-(2H)-酮肟的取代肉桂酰衍生物系列中新的潜在 5-HT2 和 GABAA 配体。新化合物由 3,4,6,7,8,9-hexahydrodibenzo[b,d]furan-1(2H)-one oxime 和取代的肉桂酰氯合成。新物质的抗惊厥活性是通过最大电击癫痫发作试验确定的:结果:3,4,6,7,8,9-六氢二苯并[b,d]呋喃-1-(2H)-酮肟的几种合成的取代肉桂酰衍生物显著降低了抽搐表现的严重程度,并完全阻止了动物在 MES 后的死亡。研究人员对其结构-活性关系进行了研究。发现最有效的化合物是 GIZH-348 (1g)(3,4,6,7,8,9-六氢二苯并[b,d]呋喃-1(2Н)-酮 О-(4-氯苯基)丙烯酰)肟),剂量为 10-20 mg/kg:通过分子和药理模型方法,我们创造了一组新的具有抗惊厥活性的 3,4,6,7,8,9-六氢二苯并[b,d]呋喃-1-(2H)-酮肟的取代肉桂酰衍生物。
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引用次数: 0
A Review of Antidiabetic Medicinal Plants as a Novel Source of Phosphodiesterase Inhibitors: Future Perspective of New Challenges Against Diabetes Mellitus. 抗糖尿病药用植物作为磷酸二酯酶抑制剂新来源的综述:抗糖尿病新挑战的未来展望》。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064255060231116192839
Hayat Ouassou, Nour Elhouda Daoudi, Saliha Bouknana, Rhizlan Abdnim, Mohamed Bnouham

Intracellular glucose concentration plays a crucial role in initiating the molecular secretory process of pancreatic β-cells through multiple messengers and signaling pathways. Cyclic nucleotides are key physiological regulators that modulate pathway interactions in β -cells. An increase of cyclic nucleotides is controled by hydrolysed phosphodiesterases (PDEs), which degrades cyclic nucleotides into inactive metabolites. Despite the undeniable therapeutic potential of PDE inhibitors, they are associated with several side effects. The treatment strategy for diabetes based on PDE inhibitors has been proposed for a long time. Hence, the world of natural antidiabetic medicinal plants represents an ideal source of phosphodiesterase inhibitors as a new strategy for developing novel agents to treat diabetes mellitus. This review highlights medicinal plants traditionally used in the treatment of diabetes mellitus that have been proven to have inhibitory effects on PDE activity. The contents of this review were sourced from electronic databases, including Science Direct, PubMed, Springer Link, Web of Science, Scopus, Wiley Online, Scifinder and Google Scholar. These databases were consulted to collect information without any limitation date. After comprehensive literature screening, this paper identified 27 medicinal plants that have been reported to exhibit anti-phosphodiesterase activities. The selection of these plants was based on their traditional uses in the treatment of diabetes mellitus. The review emphasizes the antiphosphodiesterase properties of 31 bioactive components derived from these plant extracts. Many phenolic compounds have been identified as PDE inhibitors: Brazilin, mesozygin, artonin I, chalcomaracin, norartocarpetin, moracin L, moracin M, moracin C, curcumin, gallic acid, caffeic acid, rutin, quercitrin, quercetin, catechin, kaempferol, chlorogenic acid, and ellagic acid. Moreover, smome lignans have reported as PDE inhibitors: (+)-Medioresinol di-O-β-d-glucopyranoside, (+)- Pinoresinol di-O-β-d-glucopyranoside, (+)-Pinoresinol-4-O-β-d-glucopyranosyl (1→6)-β-dglucopyranoside, Liriodendrin, (+)-Pinoresinol 4'-O-β-d-glucopyranoside, and forsythin. This review provides a promising starting point of medicinal plants, which could be further studied for the development of natural phosphodiesterase inhibitors to treat diabetes mellitus. Therefore, it is important to consider clinical studies for the identification of new targets for the treatment of diabetes.

细胞内葡萄糖浓度通过多种信使和信号通路在启动胰腺β细胞的分子分泌过程中发挥着至关重要的作用。环核苷酸是调节β细胞内通路相互作用的关键生理调节剂。环核苷酸的增加受水解磷酸二酯酶(PDE)的控制,磷酸二酯酶可将环核苷酸降解为无活性的代谢物。尽管磷酸二酯酶抑制剂具有不可否认的治疗潜力,但它们也有一些副作用。基于 PDE 抑制剂的糖尿病治疗策略提出已久。因此,天然抗糖尿病药用植物是磷酸二酯酶抑制剂的理想来源,是开发治疗糖尿病新型药物的新策略。本综述重点介绍了传统上用于治疗糖尿病的药用植物,这些植物已被证实对磷酸二酯酶活性具有抑制作用。本综述的内容来自电子数据库,包括 Science Direct、PubMed、Springer Link、Web of Science、Scopus、Wiley Online、Scifinder 和 Google Scholar。这些数据库的信息收集不受日期限制。经过全面的文献筛选,本文确定了 27 种据报道具有抗磷酸二酯酶活性的药用植物。选择这些植物的依据是它们在治疗糖尿病方面的传统用途。综述强调了从这些植物提取物中提取的 31 种生物活性成分的抗磷酸二酯酶特性。许多酚类化合物已被确认为 PDE 抑制剂:这些酚类化合物包括:巴西苷、中泽苷、青蒿素 I、查尔科马拉辛、去甲斑蝥素、吗拉辛 L、吗拉辛 M、吗拉辛 C、姜黄素、没食子酸、咖啡酸、芦丁、槲皮素、槲皮素、儿茶素、山柰酚、绿原酸和鞣花酸。此外,据报道还有一些木酚素可作为 PDE 抑制剂:(+)-Medioresinol di-O-β-d-glucopyranoside, (+)-Pinoresinol di-O-β-d-glucopyranoside, (+)-Pinoresinol-4-O-β-d-glucopyranosyl (1→6)-β-dglucopyranoside, Liriodendrin, (+)-Pinoresinol 4'-O-β-d-glucopyranoside, 和连翘素。这篇综述为药用植物提供了一个很有前景的起点,可以进一步研究这些植物,以开发治疗糖尿病的天然磷酸二酯酶抑制剂。因此,必须考虑进行临床研究,以确定治疗糖尿病的新靶点。
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引用次数: 0
Synthesis, Antimicrobial Evaluation, and Interaction of Emodin Alkyl Azoles with DNA and HSA. 大黄素烷基唑的合成、抗菌评估以及与 DNA 和 HSA 的相互作用。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064283049240124115544
Yu-Hang Zhou, Ying Wang, Hui-Zhen Zhang

Objective: This study aimed to overcome the growing antibiotic resistance. Moreover, the new series of emodin alkyl azoles were synthesized.

Method: The novel emodin alkyl azoles were synthesized using commercial emodin and azoles by alkylation. The NMR and HRMS spectra were employed to confirm the structures of novel prepared compounds. The in vitro antibacterial and antifungal activities of the prepared emodin compounds were studied by the 96-well plate method. The binding behavior between emodin 4-nitro imidazole compound 3c and S. aureus DNA was researched using an ultraviolet-visible spectrophotometer. Furthermore, fluorescence spectrometry was used to explore the interaction with human serum albumin (HSA).

Results: The in vitro antimicrobial results displayed that compound 3c gave relatively strong activities with MIC values of 4-16 μg/mL. Notably, this compound exhibited 2-fold more potent activity against S. aureus (MIC = 4 μg/mL) and E. coli (MIC = 8 μg/mL) strains than clinical drug Chloromycin (MIC = 8 and 16 μg/mL). The UV-vis absorption spectroscopy showed that 4-nitro imidazole emodin 3c could form the 3c-DNA complex by intercalating into S. aureus DNA, inhibiting antimicrobial activities. The simulation results displayed that the emodin 3c and DNA complex were formed by hydrogen bonds. The spectral experiment demonstrated that compound 3c could be transported by human serum albumin (HSA) via hydrogen bonds. The molecular simulation found that the hydroxyl group and the nitroimidazole ring of the emodin compound showed an important role in transportation behavior.

Conclusion: This work may supply useful directions for the exploration of novel antimicrobial agents.

研究目的本研究旨在克服日益增长的抗生素耐药性。此外,还合成了一系列新的大黄素烷基唑:方法:利用商品大黄素和唑类化合物通过烷基化反应合成了新型大黄素烷基唑类化合物。利用核磁共振和 HRMS 图谱确认了所制备的新型化合物的结构。采用 96 孔板法研究了所制备的大黄素化合物的体外抗菌和抗真菌活性。利用紫外可见分光光度计研究了大黄素 4-硝基咪唑化合物 3c 与金黄色葡萄球菌 DNA 的结合行为。此外,还利用荧光光谱法探讨了与人血清白蛋白(HSA)的相互作用:体外抗菌结果表明,化合物 3c 具有相对较强的活性,其 MIC 值为 4-16 µg/mL。值得注意的是,该化合物对金黄色葡萄球菌(MIC = 4 µg/mL)和大肠杆菌(MIC = 8 µg/mL)菌株的活性是临床药物氯霉素(MIC = 8 和 16 µg/mL)的 2 倍。紫外-可见吸收光谱显示,4-硝基咪唑大黄素 3c 可通过插入金黄色葡萄球菌 DNA 形成 3c-DNA 复合物,从而抑制抗菌活性。模拟结果表明,大黄素 3c 与 DNA 复合物是通过氢键形成的。光谱实验表明,大黄素 3c 可通过氢键被人血清白蛋白(HSA)转运。分子模拟发现,大黄素化合物的羟基和硝基咪唑环在运输行为中起着重要作用:结论:这项研究为探索新型抗菌剂提供了有益的方向。
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引用次数: 0
Biochemical and In Silico Studies on Triazole Derivatives as Tyrosinase Inhibitors: Potential Treatment of Hyperpigmentation Related Skin Disorders. 三唑衍生物作为酪氨酸酶抑制剂的生化和硅学研究:治疗色素沉着相关皮肤疾病的潜力。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064271581231219111952
Yusra Choudhary, Atia-Tul-Wahab, Humaira Zafar, Salman Siddiqui, Majid Khan, Khalid M Khan, Amer H Asseri, M Iqbal Choudhary, Atta-Ur-Rahman

Introduction: Tyrosinase is a versatile, glycosylated copper-containing oxidase enzyme that mainly catalyzes the biosynthesis of melanin in mammals. Its overexpression leads to the formation of excess melanin, resulting in hyperpigmentary skin disorders, such as dark spots, melasma, freckles, etc. Therefore, inhibition of tyrosinase is a therapeutic approach for the treatment of hyperpigmentation.

Methods: The current study focused on evaluating tyrosinase inhibitory activities of triazole derivatives 1-20, bearing different substituents on the phenyl ring. 17 derivatives have shown a potent tyrosinase inhibition with IC50 values between 1.6 to 13 μM, as compared to the standard drug, i.e., kojic acid (IC50 = 24.1 ± 0.5 μM). Particularly, compounds 11 and 15 displayed 12 times more potent inhibitory effects than the kojic acid.

Results: The structure-activity relationship revealed that substituting halogens at the C-4 position of the benzene ring renders remarkable anti-tyrosinase activities. Compounds 1-3 and 8 showed a competitive type of inhibition, while compounds 5, 11, and 15 showed a non-competitive mode of inhibition. Next, we performed molecular docking analyses to study the binding modes and interactions between the ligands (inhibitors) and the active site of the tyrosinase enzyme (receptor). Besides this, we have assessed the toxicity profile of inhibitors on the BJ human fibroblast cell line.

Conclusion: The majority of the newly identified tyrosinase inhibitors were found to be noncytotoxic. The results presented herein form the basis of further studies on triazole derivatives as potential drug leads against tyrosinase-related diseases.

简介:酪氨酸酶是一种多功能的糖基化含铜氧化酶,主要催化哺乳动物体内黑色素的生物合成。它的过度表达会导致过量黑色素的形成,从而引起色素沉着性皮肤病,如黑斑、黄褐斑、雀斑等。因此,抑制酪氨酸酶是治疗色素沉着的一种治疗方法:本研究重点评估了在苯环上具有不同取代基的三唑衍生物 1-20 的酪氨酸酶抑制活性。与标准药物曲酸(IC50 = 24.1 ± 0.5 μM)相比,17 种衍生物对酪氨酸酶具有强效抑制作用,IC50 值在 1.6 至 13 μM 之间。其中,化合物 11 和 15 的抑制效果是曲酸的 12 倍:结果:结构-活性关系表明,在苯环的 C-4 位上取代卤素具有显著的抗酪氨酸酶活性。化合物 1-3 和 8 显示出竞争型抑制作用,而化合物 5、11 和 15 显示出非竞争型抑制作用。接下来,我们进行了分子对接分析,研究配体(抑制剂)与酪氨酸酶活性位点(受体)之间的结合模式和相互作用。此外,我们还评估了抑制剂对 BJ 人成纤维细胞系的毒性:结论:大多数新发现的酪氨酸酶抑制剂都是无毒的。本文介绍的结果为进一步研究三唑衍生物作为治疗酪氨酸酶相关疾病的潜在药物线索奠定了基础。
{"title":"Biochemical and <i>In Silico</i> Studies on Triazole Derivatives as Tyrosinase Inhibitors: Potential Treatment of Hyperpigmentation Related Skin Disorders.","authors":"Yusra Choudhary, Atia-Tul-Wahab, Humaira Zafar, Salman Siddiqui, Majid Khan, Khalid M Khan, Amer H Asseri, M Iqbal Choudhary, Atta-Ur-Rahman","doi":"10.2174/0115734064271581231219111952","DOIUrl":"10.2174/0115734064271581231219111952","url":null,"abstract":"<p><strong>Introduction: </strong>Tyrosinase is a versatile, glycosylated copper-containing oxidase enzyme that mainly catalyzes the biosynthesis of melanin in mammals. Its overexpression leads to the formation of excess melanin, resulting in hyperpigmentary skin disorders, such as dark spots, melasma, freckles, etc. Therefore, inhibition of tyrosinase is a therapeutic approach for the treatment of hyperpigmentation.</p><p><strong>Methods: </strong>The current study focused on evaluating tyrosinase inhibitory activities of triazole derivatives 1-20, bearing different substituents on the phenyl ring. 17 derivatives have shown a potent tyrosinase inhibition with IC<sub>50</sub> values between 1.6 to 13 μM, as compared to the standard drug, i.e., kojic acid (IC<sub>50</sub> = 24.1 ± 0.5 μM). Particularly, compounds 11 and 15 displayed 12 times more potent inhibitory effects than the kojic acid.</p><p><strong>Results: </strong>The structure-activity relationship revealed that substituting halogens at the C-4 position of the benzene ring renders remarkable anti-tyrosinase activities. Compounds 1-3 and 8 showed a competitive type of inhibition, while compounds 5, 11, and 15 showed a non-competitive mode of inhibition. Next, we performed molecular docking analyses to study the binding modes and interactions between the ligands (inhibitors) and the active site of the tyrosinase enzyme (receptor). Besides this, we have assessed the toxicity profile of inhibitors on the BJ human fibroblast cell line.</p><p><strong>Conclusion: </strong>The majority of the newly identified tyrosinase inhibitors were found to be noncytotoxic. The results presented herein form the basis of further studies on triazole derivatives as potential drug leads against tyrosinase-related diseases.</p>","PeriodicalId":18382,"journal":{"name":"Medicinal Chemistry","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139996699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Predicting the Efficacy of Novel Synthetic Compounds in the Treatment of Osteosarcoma via Anti-Receptor Activator of Nuclear Factor-κB Ligand (RANKL)/Receptor Activator of Nuclear Factor-κB (RANK) Targets. 通过抗核因子κB受体激活剂配体(RANKL)/核因子κB受体激活剂(RANK)靶点预测新型合成化合物治疗骨肉瘤的疗效。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064287922240222115200
Wenhua Zhang, Siping Xu, Peng Liu, Xusheng Li, Xinyuan Yu, Bing Kang

Background: Osteosarcoma (OS) currently demonstrates a rising incidence, ranking as the predominant primary malignant tumor in the adolescent demographic. Notwithstanding this trend, the pharmaceutical landscape lacks therapeutic agents that deliver satisfactory efficacy against OS.

Objective: This study aimed to authenticate the outcomes of prior research employing the HM and GEP algorithms, endeavoring to expedite the formulation of efficacious therapeutics for osteosarcoma.

Methods: A robust quantitative constitutive relationship model was engineered to prognosticate the IC50 values of innovative synthetic compounds, harnessing the power of gene expression programming. A total of 39 natural products underwent optimization via heuristic methodologies within the CODESSA software, resulting in the establishment of a linear model. Subsequent to this phase, a mere quintet of descriptors was curated for the generation of non-linear models through gene expression programming.

Results: The squared correlation coefficients and s2 values derived from the heuristics stood at 0.5516 and 0.0195, respectively. Gene expression programming yielded squared correlation coefficients and mean square errors for the training set at 0.78 and 0.0085, respectively. For the test set, these values were determined to be 0.71 and 0.0121, respectively. The s2 of the heuristics for the training set was discerned to be 0.0085.

Conclusion: The analytic scrutiny of both algorithms underscores their commendable reliability in forecasting the efficacy of nascent compounds. A juxtaposition based on correlation coefficients elucidates that the GEP algorithm exhibits superior predictive prowess relative to the HM algorithm for novel synthetic compounds.

背景:骨肉瘤(Osteosarcoma,OS)目前的发病率呈上升趋势,是青少年人群中最主要的原发性恶性肿瘤。尽管有这一趋势,但医药领域仍缺乏对骨肉瘤有满意疗效的治疗药物:本研究旨在验证之前采用 HM 和 GEP 算法的研究成果,以加快骨肉瘤有效治疗药物的研发:方法:利用基因表达编程的力量,设计了一个稳健的定量构效关系模型来预测创新合成化合物的 IC50 值。通过 CODESSA 软件中的启发式方法,共对 39 种天然产品进行了优化,最终建立了一个线性模型。在这一阶段之后,通过基因表达编程,仅对五种描述因子进行了策划,以生成非线性模型:结果:启发式方法得出的平方相关系数和 s2 值分别为 0.5516 和 0.0195。基因表达编程得出的训练集相关系数平方和均方误差分别为 0.78 和 0.0085。测试集的相关系数平方和均方误差分别为 0.78 和 0.0085,测试集的相关系数平方和均方误差分别为 0.71 和 0.0121。启发式方法在训练集上的 s2 为 0.0085:对这两种算法的分析研究表明,它们在预测新化合物的疗效方面具有值得称道的可靠性。基于相关系数的并列分析表明,相对于 HM 算法,GEP 算法对新型合成化合物的预测能力更强。
{"title":"Predicting the Efficacy of Novel Synthetic Compounds in the Treatment of Osteosarcoma <i>via</i> Anti-Receptor Activator of Nuclear Factor-κB Ligand (RANKL)/Receptor Activator of Nuclear Factor-κB (RANK) Targets.","authors":"Wenhua Zhang, Siping Xu, Peng Liu, Xusheng Li, Xinyuan Yu, Bing Kang","doi":"10.2174/0115734064287922240222115200","DOIUrl":"10.2174/0115734064287922240222115200","url":null,"abstract":"<p><strong>Background: </strong>Osteosarcoma (OS) currently demonstrates a rising incidence, ranking as the predominant primary malignant tumor in the adolescent demographic. Notwithstanding this trend, the pharmaceutical landscape lacks therapeutic agents that deliver satisfactory efficacy against OS.</p><p><strong>Objective: </strong>This study aimed to authenticate the outcomes of prior research employing the HM and GEP algorithms, endeavoring to expedite the formulation of efficacious therapeutics for osteosarcoma.</p><p><strong>Methods: </strong>A robust quantitative constitutive relationship model was engineered to prognosticate the IC<sub>50</sub> values of innovative synthetic compounds, harnessing the power of gene expression programming. A total of 39 natural products underwent optimization <i>via</i> heuristic methodologies within the CODESSA software, resulting in the establishment of a linear model. Subsequent to this phase, a mere quintet of descriptors was curated for the generation of non-linear models through gene expression programming.</p><p><strong>Results: </strong>The squared correlation coefficients and <i>s</i>2 values derived from the heuristics stood at 0.5516 and 0.0195, respectively. Gene expression programming yielded squared correlation coefficients and mean square errors for the training set at 0.78 and 0.0085, respectively. For the test set, these values were determined to be 0.71 and 0.0121, respectively. The s2 of the heuristics for the training set was discerned to be 0.0085.</p><p><strong>Conclusion: </strong>The analytic scrutiny of both algorithms underscores their commendable reliability in forecasting the efficacy of nascent compounds. A juxtaposition based on correlation coefficients elucidates that the GEP algorithm exhibits superior predictive prowess relative to the HM algorithm for novel synthetic compounds.</p>","PeriodicalId":18382,"journal":{"name":"Medicinal Chemistry","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11348461/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140101861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Determination of Novel SARS-CoV-2 Inhibitors by Combination of Machine Learning and Molecular Modeling Methods. 结合机器学习和分子建模方法确定新型SARS-CoV-2抑制剂
IF 2.3 4区 医学 Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-01-01 DOI: 10.2174/0115734064265609231026063624
Ersin Güner, Özgür Özkan, Gözde Yalcin-Ozkat, Süreyya Ölgen

Introduction: Within the scope of the project, this study aimed to find novel inhibitors by combining computational methods. In order to design inhibitors, it was aimed to produce molecules similar to the RdRp inhibitor drug Favipiravir by using the deep learning method.

Methods: For this purpose, a Trained Neural Network (TNN) was used to produce 75 molecules similar to Favipiravir by using Simplified Molecular Input Line Entry System (SMILES) representations. The binding properties of molecules to Viral RNA-dependent RNA polymerase (RdRp) were studied by using molecular docking studies. To confirm the accuracy of this method, compounds were also tested against 3CL protease (3CLpro), which is another important enzyme for the progression of SARS-CoV-2. Compounds having better binding energies and RMSD values than favipiravir were searched with similarity analysis on the ChEMBL drug database in order to find similar structures with RdRp and 3CLpro inhibitory activities.

Results: A similarity search found new 200 potential RdRp and 3CLpro inhibitors structurally similar to produced molecules, and these compounds were again evaluated for their receptor interactions with molecular docking studies. Compounds showed better interaction with RdRp protease than 3CLpro. This result presented that artificial intelligence correctly produced structures similar to favipiravir that act more specifically as RdRp inhibitors. In addition, Lipinski's rules were applied to the molecules that showed the best interaction with RdRp, and 7 compounds were determined to be potential drug candidates. Among these compounds, a Molecular Dynamic simulation study was applied for ChEMBL ID:1193133 to better understand the existence and duration of the compound in the receptor site.

Conclusion: The results confirmed that the ChEMBL ID:1193133 compound showed good Root Mean Square Deviation (RMSD), Root Mean Square Fluctuation (RMSF), hydrogen bonding, and remaining time in the active site; therefore, it was considered that it could be active against the virus. This compound was also tested for antiviral activity, and it was determined that it did not delay viral infection, although it was cytotoxic between 5mg/mL-1.25mg/mL concentrations. However, if other compounds could be tested, it might provide a chance to obtain activity, and compounds should also be tested against the enzymes as well as the other types of viruses.

在项目范围内,本研究旨在结合计算方法寻找新的抑制剂。为了设计抑制剂,目的是利用深度学习方法产生类似于RdRp抑制剂药物Favipiravir的分子。方法:为此,采用简化分子输入线输入系统(SMILES)表示,利用训练神经网络(TNN)生成75个与Favipiravir相似的分子。采用分子对接方法研究了分子与病毒RNA依赖性RNA聚合酶(RdRp)的结合特性。为了证实该方法的准确性,还测试了化合物对3CL蛋白酶(3CLpro)的作用,3CL蛋白酶是SARS-CoV-2进展的另一个重要酶。在ChEMBL药物数据库中进行相似性分析,寻找结合能和RMSD值比favipiravir更好的化合物,寻找与RdRp和3CLpro抑制活性相似的结构。结果:相似性搜索发现了新的200个潜在的RdRp和3CLpro抑制剂,其结构与产生的分子相似,这些化合物再次通过分子对接研究评估其受体相互作用。化合物与RdRp蛋白酶的相互作用优于3CLpro。这一结果表明,人工智能正确地产生了类似于favipiravir的结构,更特异性地作为RdRp抑制剂。此外,将Lipinski规则应用于与RdRp相互作用最好的分子,确定了7种化合物作为潜在的候选药物。其中,我们对ChEMBL ID:1193133进行了分子动力学模拟研究,以更好地了解该化合物在受体位点的存在和持续时间。结论:化合物ChEMBL ID:1193133具有良好的均方根偏差(RMSD)、均方根波动(RMSF)、氢键和活性位点剩余时间;因此,人们认为它可能对病毒有活性。该化合物还进行了抗病毒活性测试,并确定它不能延缓病毒感染,尽管它在5mg/mL-1.25mg/mL浓度之间具有细胞毒性。然而,如果可以测试其他化合物,它可能提供一个获得活性的机会,并且化合物也应该针对酶和其他类型的病毒进行测试。
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引用次数: 0
Design and Synthesis of 6-amido-3-carboxypyridazine Derivatives as Potent T3SS Inhibitors of Salmonella enterica Serovar Typhimurium. 6-amido-3-carboxypyridazine Derivatives 作为伤寒沙门氏菌 T3SS 强效抑制剂的设计与合成。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064252833231129062005
Zhenyu Li, Zhiyong Liu, Yuemao Shen, Chengwu Shen

Background: Salmonella enterica (S. enterica) serovar Typhimurium, an anaerobic enteric pathogene, could cause human and animal diseases ranging from mild gastroenteritis to whole body serious infections.

Objective: The goal of this paper was to synthesize new 6-amido-3-carboxypyridazine derivatives with different lengths of side chains with the aim of getting potent antibacterial agents.

Methods: Synthesized compounds were analyzed by analytical techniques, such as 1H NMR, 13C NMR spectra, and mass spectrometry. We designed a series of novel 6-amido-3-carboxypyridazines using FA as the lead compound with the scaffold hopping strategy and their inhibitory activity against the effectors of type III secretion system (T3SS) using SDS-PAGE and western blot analysis for two rounds. Also, the preliminary mechanism of action of this series of compounds on T3SS was performed using real-time qPCR.

Results: Nine 6-amido-3-carboxypyridazines was synthesized. The inhibitory activities evaluated showed that compound 2i was the most potent T3SS inhibitor, which demonstrated potent inhibitory activities on the secretion of the T3SS SPI-1 effectors in a dose-dependent manner. The transcription of SPI-1 may be affected by compound 2i through the SicA/InvF regulatory pathway.

Conclusion: The novel synthetic 6-amido-3-carboxypyridazines could act as potent leads for the development of novel antibacterial agents.

背景:肠炎沙门氏菌(S. enterica)是一种厌氧性肠道致病菌,可引起从轻微肠胃炎到全身严重感染的人类和动物疾病:本文旨在合成具有不同长度侧链的新型 6-氨基-3-羧基哒嗪衍生物,以期获得强效抗菌剂:方法:利用 1H NMR、13C NMR 光谱和质谱等分析技术对合成的化合物进行分析。我们以 FA 为先导化合物,采用支架跳转策略设计了一系列新型 6-氨基-3-羧基哒嗪类化合物,并利用 SDS-PAGE 和 Western 印迹分析法对它们对 III 型分泌系统(T3SS)效应因子的抑制活性进行了两轮研究。此外,还利用实时 qPCR 研究了该系列化合物对 T3SS 的初步作用机制:结果:合成了 9 个 6-氨基-3-羧基哒嗪类化合物。抑制活性的评估结果表明,化合物 2i 是最有效的 T3SS 抑制剂,它以剂量依赖的方式对 T3SS SPI-1 效应子的分泌具有强效的抑制活性。有趣的是,化合物 2i 可能通过 SicA/ InvF 调节途径影响 SPI-1 的转录:结论:新合成的 6-氨基-3-羧基哒嗪类化合物可作为开发新型抗菌剂的有效线索。
{"title":"Design and Synthesis of 6-amido-3-carboxypyridazine Derivatives as Potent T3SS Inhibitors of <i>Salmonella enterica</i> Serovar Typhimurium.","authors":"Zhenyu Li, Zhiyong Liu, Yuemao Shen, Chengwu Shen","doi":"10.2174/0115734064252833231129062005","DOIUrl":"10.2174/0115734064252833231129062005","url":null,"abstract":"<p><strong>Background: </strong><i>Salmonella enterica (S. enterica)</i> serovar Typhimurium, an anaerobic enteric pathogene, could cause human and animal diseases ranging from mild gastroenteritis to whole body serious infections.</p><p><strong>Objective: </strong>The goal of this paper was to synthesize new 6-amido-3-carboxypyridazine derivatives with different lengths of side chains with the aim of getting potent antibacterial agents.</p><p><strong>Methods: </strong>Synthesized compounds were analyzed by analytical techniques, such as <sup>1</sup>H NMR, <sup>13</sup>C NMR spectra, and mass spectrometry. We designed a series of novel 6-amido-3-carboxypyridazines using FA as the lead compound with the scaffold hopping strategy and their inhibitory activity against the effectors of type III secretion system (T3SS) using SDS-PAGE and western blot analysis for two rounds. Also, the preliminary mechanism of action of this series of compounds on T3SS was performed using real-time qPCR.</p><p><strong>Results: </strong>Nine 6-amido-3-carboxypyridazines was synthesized. The inhibitory activities evaluated showed that compound 2i was the most potent T3SS inhibitor, which demonstrated potent inhibitory activities on the secretion of the T3SS SPI-1 effectors in a dose-dependent manner. The transcription of SPI-1 may be affected by compound 2i through the <i>SicA/InvF</i> regulatory pathway.</p><p><strong>Conclusion: </strong>The novel synthetic 6-amido-3-carboxypyridazines could act as potent leads for the development of novel antibacterial agents.</p>","PeriodicalId":18382,"journal":{"name":"Medicinal Chemistry","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139403588","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antibacterial Evaluation of Gallic Acid and its Derivatives against a Panel of Multi-drug Resistant Bacteria. 没食子酸及其衍生物对耐多药细菌的抗菌评估
IF 2.3 4区 医学 Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-01-01 DOI: 10.2174/1573406419666230823104300
Mohamed Abdella, Chandrajit Lahiri, Iskandar Abdullah, Ayaz Anwar

Background: Infectious diseases are the second leading cause of deaths worldwide. Pathogenic bacteria have been developing tremendous resistance against antibiotics which has placed an additional burden on healthcare systems. Gallic acid belongs to a naturally occurring phenolic class of compounds and is known to possess a wide spectrum of antimicrobial activities.

Aims & objectives: In this study, we synthesized thirteen derivatives of gallic acid and evaluated their antibacterial potential against seven multi-drug resistant bacteria, as well as cytotoxic effects against human embryonic kidney cell line in vitro. Methods: 13 compounds were successfully synthesized with moderate to good yield and evaluated. Synthesized derivatives were characterized by using nuclear magnetic resonance spectroscopy, mass spectrometry, and Fourier transformation infrared spectroscopy. Antibacterial activity was determined using microdilution while cytotoxicyt was assessed using MTT assay.

Results: The results of antibacterial assay showed that seven out of thirteen compounds exhibited antibacterial effects with compound 6 and 13 being most potent against Staphylococcus aureus (MIC 56 μg/mL) and Salmonella enterica (MIC 475 μg/mL) respectively. On the other hand, most of these compounds showed lower cytotoxicity against human embryonic kidney cells (HEK 293), with IC50 values ranging from over 700 μg/mL.

Conclusion: Notably, compound 13 was found to be non-toxic at concentrations as high as 5000 μg/mL. These findings suggest that the present synthetic derivatives of gallic acid hold potential for further studies in the development of potent antibacterial agents.

背景:传染病是全球第二大死因。病原菌对抗生素产生了巨大的抗药性,这给医疗系统带来了额外的负担。没食子酸属于天然酚类化合物,具有广泛的抗菌活性:在这项研究中,我们合成了十三种没食子酸衍生物,并在体外评估了它们对七种多重耐药细菌的抗菌潜力以及对人类胚胎肾细胞系的细胞毒性作用。方法:成功合成了 13 种化合物,并对其进行了评估。利用核磁共振光谱、质谱和傅立叶变换红外光谱对合成的衍生物进行了表征。抗菌活性采用微量稀释法测定,细胞毒性采用 MTT 法评估:抗菌试验结果表明,13 种化合物中有 7 种具有抗菌效果,其中化合物 6 和 13 对金黄色葡萄球菌(MIC 为 56 μg/mL)和肠炎沙门氏菌(MIC 为 475 μg/mL)的抗菌效果最强。另一方面,大多数化合物对人类胚胎肾细胞(HEK 293)的细胞毒性较低,IC50 值在 700 μg/mL 以上:值得注意的是,化合物 13 在浓度高达 5000 μg/mL 时也无毒性。这些发现表明,目前的没食子酸合成衍生物具有进一步研究开发强效抗菌剂的潜力。
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引用次数: 0
Synthesis, Characterization, and Investigation of Doxorubicin Drug Release Properties of Poly(acrylamide-co-acrylic Acid/Maleic Acid)-Hydroxyapatite Composite Hydrogel. 聚(丙烯酰胺-共丙烯酸/马来酸)-羟基磷灰石复合水凝胶的合成、表征和多柔比星药物释放特性研究
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064268726231203164405
Birnur Akkaya, Recep Akkaya

Background: Hydroxyapatite and its derivatives have been used for a lot of applications. One of them is drug release studies. Due to its low adhesion strength and lack of the strength and durability required for load-carrying applications, there is a need to improve the properties of hydroxyapatite. For this aim, the most important factors are increasing pH sensitivity and preventing coagulation. Mixing it with multifunctional polymers is the best solution.

Objectives: The main objectives are: 1- preparing poly(acrylamide-co-acrylic acid/maleic acid)- hydroxyapatite (PAm-co-PAA/PMA-HApt), 2- assessment of (PAm-co-PAA/PMA-HApt) and dox-loaded poly(acrylamide-co-acrylic acid/maleic acid) (Dox-(PAm-co-PAA/PMA-HApt)) composite hydrogels, and 3- elucidating the difference in behavior of drug release studies between hydroxyapatite (HApt) and poly(acrylamide-co-acrylic acid/maleic acid) composite hydrogels.

Methods: A composite of PAm-co-PAA/PMA-HApt was prepared by direct polymerization of acrylamide-co-acrylic acid/maleic acid in a suspension of HApt. The drug loading and release features of PAm-co-PAA/PMA-HApt and HApt were then investigated for doxorubicin (dox) release. Using Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), scanning electron microscopy (SEM), and thermogravimetric analysis (TG/DTA), this unique composite hydrogel has been physicochemically investigated. Also, a colorimetric assay was used to assess the in vitro biocompatible support and anticancer activity of HApt and the newly developed composite hydrogel XTT (2,3-Bis-(2-Methoxy-4-Nitro-5-Sulfophenyl)-2H-Tetrazolium-5-Carboxanilide) assay.

Results: According to the results of drug release studies of this new material, it is pH sensitive, and PAm-co-PAA/PMA-HApt demonstrated a faster release than HApt at 37°C in the acidic solution of pH 4.5 than in the neutral solution of pH 7.4. The XTT assay outcomes also demonstrated the biocompatibility of PAm-co-PAA/PMA-HApt and HApt and the cytotoxic effect of dox-loaded PAm-co-PAA/PMA-HApt.

Conclusion: It should be inferred that the drug release profile was improved at pH 4.5 by the newly produced pH-sensitive composite hydrogel.

背景:羟基磷灰石及其衍生物已被广泛应用。药物释放研究就是其中之一。由于羟基磷灰石的粘附强度较低,缺乏承载应用所需的强度和耐久性,因此有必要改善其特性。为此,最重要的因素是提高 pH 值敏感性和防止凝结。将羟基磷灰石与多功能聚合物混合是最佳解决方案:主要目标是1- 制备聚(丙烯酰胺-丙烯酸/马来酸)-羟基磷灰石(PAm-co-PAA/PMA-HApt),2- 评估(PAm-co-PAA/PMA-HApt)和多克斯负载聚(丙烯酰胺-丙烯酸/马来酸)(Dox-(PAm-co-PAA/PMA-HApt))复合水凝胶、3- 阐明羟基磷灰石(HApt)与聚丙烯酰胺-丙烯酸/马来酸复合水凝胶在药物释放研究中的行为差异。研究方法在 HApt 悬浮液中直接聚合丙烯酰胺-丙烯酸/马来酸,制备出 PAm-co-PAA/PMA-HApt 复合材料。然后研究了 PAm-co-PAA/PMA-HApt 和 HApt 在释放多柔比星 (dox) 时的药物负载和释放特性。利用傅立叶变换红外光谱(FTIR)、X 射线衍射(XRD)、扫描电子显微镜(SEM)和热重分析(TG/DTA)对这种独特的复合水凝胶进行了理化研究。此外,还采用比色法评估了 HApt 和新开发的复合水凝胶 XTT(2,3-双-(2-甲氧基-4-硝基-5-磺酸苯基)-2H-四唑-5-甲酰苯胺)的体外生物相容性支持和抗癌活性:根据这种新材料的药物释放研究结果,它对 pH 值很敏感,在 37 °C 下,PAm-co-PAA/PMA-HApt 在 pH 值为 4.5 的酸性溶液中的释放速度比在 pH 值为 7.4 的中性溶液中的释放速度快。XTT 试验结果还证明了 PAm-co-PAA/PMA-HApt 和 HApt 的生物相容性以及 PAm-co-PAA/PMA-HApt 的细胞毒性作用:结论:新制备的 pH 值敏感复合水凝胶改善了药物在 pH 值为 4.5 时的释放情况。
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引用次数: 0
Oxadiazole Derivatives of Diclofenac as an Anti-proliferative Agent for B-cell Non-Hodgkin Lymphoma: An In vitro and In Silico Studies. 双氯芬酸的噁二唑衍生物作为 B 细胞非霍奇金淋巴瘤的抗增殖剂:体外和硅学研究。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064290905231228110023
Shaista Qayyum, Almas Jabeen, Sajda Ashraf, Faiza Seraj, Khalid Mohammad Khan, Rafat Ali Siddiqui, Zaheer Ul-Haq

Background: Non-Hodgkin lymphoma of B cell origin is the common type of lymphoma- related malignancy with poor response rate with conventional front-line therapies.

Aim: The aim of the present study was to investigate the potential of new anti-inflammatory oxadiazole derivatives of Diclofenac as an anti-lymphoma agent through in vitro and in silico approaches.

Methods: Anti-lymphoma potential was evaluated by alamar blue technique. MTT assay employed for cytotoxicity. Gene and protein expression studies was performed by qRT-PCR and ELISA respectively. Docking studies was performed by using MOE program.

Results: Among five diclofenac derivatives, (II) showed promising anti-lymphoma effects, where it inhibited the expression of BCL-2, p-38 MAPK and TGF-β in both follicular and Burkitt's lymphoma cells and was non-toxic against normal human fibroblast cells. The in silico studies against BCL-2 revealed that the unsubstituted Sulphur group in (II) is involved in the crucial interactions with the binding site residue.

Conclusion: The compound (II) can be a potential therapeutic candidate for B-cell non-Hodgkin lymphoma and deserves further development as a novel anti-lymphoma agent.

背景:目的:本研究旨在通过体外和硅学方法研究双氯芬酸的新型抗炎噁二唑衍生物作为抗淋巴瘤药物的潜力:方法:化合物(II)对滤泡淋巴瘤细胞和伯基特淋巴瘤细胞都有抗淋巴瘤活性,而化合物(V)只对滤泡淋巴瘤细胞有抑制作用。双氯芬酸(I)和衍生物(III、IV 和 VI)没有抗增殖作用。双氯芬酸(II)能明显抑制滤泡淋巴瘤细胞和伯基特淋巴瘤细胞中 BCL-2、p-38 MAPK 和 TGF-β 的表达,对正常人成纤维细胞(BJ)无毒性:结果:针对 BCL-2 的硅学研究表明,化合物(II)中的未取代硫基参与了与结合位点残基的关键相互作用:结论:化合物(II)是治疗 B 细胞非霍奇金淋巴瘤的潜在候选药物,值得作为新型抗淋巴瘤药物进一步开发。
{"title":"Oxadiazole Derivatives of Diclofenac as an Anti-proliferative Agent for B-cell Non-Hodgkin Lymphoma: An <i>In vitro</i> and <i>In Silico</i> Studies.","authors":"Shaista Qayyum, Almas Jabeen, Sajda Ashraf, Faiza Seraj, Khalid Mohammad Khan, Rafat Ali Siddiqui, Zaheer Ul-Haq","doi":"10.2174/0115734064290905231228110023","DOIUrl":"10.2174/0115734064290905231228110023","url":null,"abstract":"<p><strong>Background: </strong>Non-Hodgkin lymphoma of B cell origin is the common type of lymphoma- related malignancy with poor response rate with conventional front-line therapies.</p><p><strong>Aim: </strong>The aim of the present study was to investigate the potential of new anti-inflammatory oxadiazole derivatives of Diclofenac as an anti-lymphoma agent through <i>in vitro</i> and <i>in silico</i> approaches.</p><p><strong>Methods: </strong>Anti-lymphoma potential was evaluated by alamar blue technique. MTT assay employed for cytotoxicity. Gene and protein expression studies was performed by qRT-PCR and ELISA respectively. Docking studies was performed by using MOE program.</p><p><strong>Results: </strong>Among five diclofenac derivatives, (II) showed promising anti-lymphoma effects, where it inhibited the expression of BCL-2, p-38 MAPK and TGF-β in both follicular and Burkitt's lymphoma cells and was non-toxic against normal human fibroblast cells. The <i>in silico</i> studies against BCL-2 revealed that the unsubstituted Sulphur group in (II) is involved in the crucial interactions with the binding site residue.</p><p><strong>Conclusion: </strong>The compound (II) can be a potential therapeutic candidate for B-cell non-Hodgkin lymphoma and deserves further development as a novel anti-lymphoma agent.</p>","PeriodicalId":18382,"journal":{"name":"Medicinal Chemistry","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139567215","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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