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2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro最新文献

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Model-based registration to correct for motion between acquisitions in diffusion MR imaging 基于模型的配准校正弥散磁共振成像中获取之间的运动
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541154
Yu Bai, D. Alexander
In diffusion tensor MRI, a number of diffusion-weighted images with different diffusion-weighting gradient directions are acquired during scanning. The tensor calculation assumes that each voxel corresponds to the same anatomical location in all the measurements. Movements and distortions violate this assumption and typically the images are realigned before model fitting. The traditional method uses a non-diffusion- weighted image as the reference for registration, but the differences between diffusion-weighted images and the non- diffusion weighted reference image can cause mismatching to occur during registration, even using metrics like the mutual information (MI) that accounts for non-linear contrast differences. We propose alternative model-based methods to improve motion correction and avoid the errors that the traditional method introduces. We demonstrate quantitative improvements using the new approaches on a full data with slight, but typical, movement during acquisition.
在弥散张量MRI中,扫描过程中会获得许多具有不同弥散加权梯度方向的弥散加权图像。张量计算假设每个体素对应于所有测量中的相同解剖位置。运动和扭曲违反了这一假设,通常图像在模型拟合之前被重新排列。传统方法使用非扩散加权图像作为配准参考,但扩散加权图像与非扩散加权参考图像之间的差异可能导致配准过程中出现不匹配,即使使用互信息(MI)等指标来解释非线性对比度差异。我们提出了基于模型的替代方法来改进运动校正,避免传统方法引入的误差。我们在采集过程中使用新方法对具有轻微但典型的移动的完整数据进行了定量改进。
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引用次数: 53
AutoMPR: Automatic detection of standard planes in 3D echocardiography AutoMPR:三维超声心动图中标准平面的自动检测
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541237
Xiaoguang Lu, B. Georgescu, Yefeng Zheng, Joanne Otsuki, D. Comaniciu
3D echocardiography is one of the emerging real-time imaging modalities that is increasingly used in clinical practice to assess cardiac functions. It provides a more complete heart representation for evaluation in comparison to conventional 2D echocardiography. However, one of the drawbacks is the time it takes clinicians to navigate the 3D volumes to the anatomy of interest and to obtain standardized views that are similar to the 2D acquisitions. We propose an automated supervised learning method to detect standard multiplanar reformatted planes (MPRs) from a 3D echocardiographic volume. Extensive evaluations on a database of 326 volumes show performance comparable to intra-user variability and the execution time of the algorithm is about 2 seconds.
三维超声心动图是一种新兴的实时成像方式,在临床实践中越来越多地用于评估心功能。与传统的二维超声心动图相比,它提供了更完整的心脏表征。然而,其中一个缺点是临床医生需要花费时间来导航3D体积到感兴趣的解剖结构,并获得类似于2D采集的标准化视图。我们提出了一种自动监督学习方法,用于从三维超声心动图容积中检测标准多平面重构平面(MPRs)。对326个卷的数据库进行广泛的评估表明,该算法的性能与用户内部的可变性相当,执行时间约为2秒。
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引用次数: 33
Theoretical analysis of complex-conjugate-ambiguity suppression in frequency-domain optical-coherence tomography 频域光学相干层析成像中复共轭模糊抑制的理论分析
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541016
C. Seelamantula, R. Michaely, R. Leitgeb, M. Unser
New phase-shifting techniques have recently been proposed to suppress the complex-conjugate ambiguity in frequency- domain optical-coherence tomography. A phase shift is introduced, in an elegant fashion, by incorporating a small beam offset at the scanning mirror. The tomogram is then computed by using a combination of Hilbert and Fourier transforms. This is a marked deviation from the conventional approaches, wherein each A-scan is reconstructed independently of the others. In this paper, we formulate the problem in a signal processing framework and provide theoretical proofs for maximal and partial suppression of complex-conjugate ambiguity. To supplement the theoretical derivations, we provide experimental results on in vivo measurements of a human finger nail.
近年来,人们提出了一种新的移相技术来抑制频域光学相干层析成像中的复共轭模糊。通过在扫描镜处合并一个小的光束偏移,以一种优雅的方式引入了相移。然后使用希尔伯特变换和傅里叶变换的组合来计算层析图。这与传统方法明显不同,传统方法中每个a扫描都是独立重建的。本文在信号处理框架中对该问题进行了表述,并给出了最大和部分抑制复共轭模糊的理论证明。为了补充理论推导,我们提供了人体指甲体内测量的实验结果。
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引用次数: 6
Minimal paths and probabilistic models for origin-destination traffic estimation in live cell imaging 活细胞成像中出发地交通估计的最小路径和概率模型
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541128
T. Pécot, C. Kervrann, P. Bouthemy
Green Fluorescent Protein (GFP)-tagging and time-lapse fluorescence microscopy enable to observe molecular dynamics and interactions in live cells. Original image analysis methods are then required to process challenging 2D or 3D image sequences. To address the tracking problem of several hundreds of objects, we propose an original framework that provides general information about vesicle transport, that is traffic flows between origin and destination regions detected in the image sequence. Traffic estimation can be accomplished by adapting the advances in Network Tomography commonly used in network communications. In this paper, we address image partition given vesicle stocking areas and multipaths routing for vesicle transport. This approach has been developed for real fluorescence image sequences and Rab proteins.
绿色荧光蛋白(GFP)标记和延时荧光显微镜能够观察活细胞中的分子动力学和相互作用。然后需要原始图像分析方法来处理具有挑战性的2D或3D图像序列。为了解决数百个目标的跟踪问题,我们提出了一个原始框架,该框架提供了关于囊泡运输的一般信息,即图像序列中检测到的原点和目的地区域之间的交通流。流量估计可以通过采用网络通信中常用的网络层析成像技术来实现。在本文中,我们解决了给定囊泡储存区域的图像分割和囊泡运输的多路径路由问题。该方法已开发用于真实荧光图像序列和Rab蛋白。
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引用次数: 9
Morphological-based adaptive segmentation and quantification of cell assays in high content screening 高含量筛选中基于形态学的自适应细胞分割和定量分析
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541007
J. Angulo, B. Schaack
In fluorescence-labelled cell assays for high content screening applications, image processing software is necessary to have automatic algorithms for segmenting the cells individually and for quantifying their intensities, size/shape parameters, etc. Mathematical morphology is a non-linear image processing technique which is proven to be a very powerful tool in biomedical microscopy image analysis. This paper presents a morphological methodology based on connected filters, watershed transformation and granulometries for segmenting cells of different size, contrast, etc. In particular, the performance of the algorithms is illustrated with cell images from a toxicity assay in three-labels (Hoechst, EGFP, Phalloi'din) on nanodrops cell-on-chip format.
在用于高含量筛选应用的荧光标记细胞分析中,图像处理软件必须具有自动算法,用于单独分割细胞并量化其强度,大小/形状参数等。数学形态学是一种非线性图像处理技术,已被证明是生物医学显微图像分析的有力工具。本文提出了一种基于连通滤波器、分水岭变换和粒度测量的形态学方法,用于分割不同大小、对比度等的细胞。特别是,算法的性能用纳米滴细胞片上格式的三标签(Hoechst, EGFP, Phalloi'din)毒性试验的细胞图像来说明。
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引用次数: 9
User parameter free approaches to multistatic adaptive ultrasound imaging 多静态自适应超声成像的无用户参数方法
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541239
Lin Du, Jian Li, P. Stoica
Delay-and-sum (DAS) beamforming is the standard technique for ultrasound imaging applications. Due to its data independent property, DAS may suffer from poorer resolution and worse interference suppression capability than the adaptive standard Capon beamformer (SCB). However, the performance of SCB is sensitive to the errors in the sample covariance matrix and the signal steering vector. Therefore, robust adaptive beamforming techniques are desirable. In this paper, we consider ultrasound imaging via applying a user parameter free robust adaptive beamformer, which uses a shrinkage-based general linear combination (QLC) algorithm to obtain an enhanced estimate of the array covariance matrix. We present several multistatic adaptive ultrasound imaging (MAUI) approaches based on QLC to achieve high resolution and good interference suppression capability. The performance of the proposed MAUI approaches is demonstrated via an experimental example.
延迟和(DAS)波束形成是超声成像应用的标准技术。由于其数据无关性,与自适应标准Capon波束形成器(SCB)相比,DAS波束形成器的分辨率较低,干扰抑制能力较差。然而,SCB的性能对样本协方差矩阵和信号转向向量的误差很敏感。因此,需要稳健的自适应波束形成技术。在本文中,我们考虑通过应用用户参数自由鲁棒自适应波束形成器,该波束形成器使用基于收缩的一般线性组合(QLC)算法来获得阵列协方差矩阵的增强估计。提出了几种基于QLC的多静态自适应超声成像(MAUI)方法,以达到高分辨率和良好的抗干扰能力。通过一个实验实例验证了所提出的MAUI方法的性能。
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引用次数: 3
Pediatric cranial defect surface analysis for craniosynostosis postoperation CT images 小儿颅缝闭锁术后CT图像缺损面分析
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541072
Chia Chi Teng, L. Shapiro, R. Hopper, J. V. Halen
Craniosynostosis is a congenital disease which consists of premature fusion of one or more cranial sutures, resulting in an abnormal head shape. Patients are usually treated by cranial vault expansion surgery to minimize the potential for brain damage. Full thickness cranial defects result from the expansion surgery, with the size directly proportional to the degree of expansion. The growing cranial skeleton has a unique regenerative capacity to heal small defects; however, when this regenerative capacity is exceeded, the defect is classed as one of critical size and requires surgical treatment to restore protection to the underlying brain. Although what constitutes a critical cranial defect is well known in animal models, it is not as clear for pediatric human skulls. The purpose of this study is to investigate a method that can effectively quantify healing of the pediatric cranial defect surface after cranial vault expansion surgery for craniosynostosis.
颅缝闭锁是一种先天性疾病,由一个或多个颅缝过早融合,导致头部形状异常。患者通常通过颅底扩张手术来减少脑损伤的可能性。颅骨全层缺损由扩张手术引起,其大小与扩张程度成正比。生长中的颅骨具有独特的再生能力,可以治愈小的缺陷;然而,当超过再生能力时,该缺陷被归类为临界尺寸之一,需要手术治疗以恢复对底层大脑的保护。尽管在动物模型中,什么构成了严重的颅骨缺陷是众所周知的,但在儿童人类颅骨中却不那么清楚。本研究的目的是探讨一种可以有效量化儿童颅穹窿扩张手术后颅缺损面愈合的方法。
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引用次数: 7
Segmentation of the evolving left ventricle by learning the dynamics 通过动态学习对左心室进行分割
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4540974
Walter Sun, M. Çetin, R. Chan, A. Willsky
We propose a method for recursive segmentation of the left ventricle (LV) across a temporal sequence of magnetic resonance (MR) images. The approach involves a technique for learning the LV boundary dynamics together with a particle-based inference algorithm on a loopy graphical model capturing the temporal periodicity of the heart. The dynamic system state is a low-dimensional representation of the boundary, and boundary estimation involves incorporating curve evolution into state estimation. By formulating the problem as one of state estimation, the segmentation at each particular time is based not only on the data observed at that instant, but also on predictions based on past and future boundary estimates. We assess and demonstrate the effectiveness of the proposed framework on a large data set of breath-hold cardiac MR image sequences.
我们提出了一种方法递归分割左心室(LV)跨越时间序列的磁共振(MR)图像。该方法包括一种学习左心室边界动力学的技术,以及一种基于粒子的推理算法,该算法基于捕获心脏时间周期性的环形图形模型。动态系统状态是边界的低维表示,边界估计涉及到将曲线演化纳入状态估计。通过将问题表述为状态估计问题,每个特定时刻的分割不仅基于该时刻的观测数据,还基于基于过去和未来边界估计的预测。我们评估并证明了所提出的框架在憋气心脏MR图像序列的大型数据集上的有效性。
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引用次数: 3
Optimization of contrast sensitivity and specificity of quadratic ultrasonic imaging 二次超声成像对比灵敏度和特异度的优化
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541242
M. Al-Mistarihi
We present a new algorithm of post-beamforming second order Volterra filter (SOVF) for deriving the quadratic kernel based on the convolution of the singular modes quadratic kernels which give the highest contrast-to-tissue ratio (CTRs) to extract quadratic components from ultrasound contrast agent (UCA) nonlinear echoes with single transmission. The new algorithm leads to reduction of tissue component and increase the specificity while optimizing the sensitivity to the UCA. The algorithm is demonstrated experimentally using images from in vivo kidney after bolus injection with UCA. Illustrative images of the kidney of a juvenile pig were obtained before and after infusion of contrast agent (SonoVue, Bracco, Geneva, Switzerland) at various concentrations. The imaging results given in this paper indicate that a signal processing approach to this clinical challenge is feasible.
针对超声造影剂(UCA)非线性单次传输回波的二次分量提取问题,提出了一种基于最高组织对比度(CTRs)的奇异模态二次核卷积的二阶Volterra滤波(SOVF)二次核提取算法。该算法在优化UCA敏感性的同时,减少了组织成分,提高了特异性。该算法通过实验验证了UCA在体内注射后的肾脏图像。在注射不同浓度的造影剂(SonoVue, Bracco, Geneva, Switzerland)前后,获得了一只幼猪肾脏的说明性图像。本文给出的影像学结果表明,信号处理方法是可行的。
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引用次数: 0
Estimation of cortical multivariate autoregressive models for EEG/MEG using an expectation-maximization algorithm 基于期望最大化算法的脑电/脑磁图皮质多元自回归模型估计
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541226
B. Cheung, B. V. Veen
A new method for estimating multivariate autoregressive (MVAR) models of cortical connectivity from surface EEG or MEG measurements is presented. Conventional approaches to this problem first attempt to solve the inverse problem to estimate cortical signals and then fit an MVAR model to the estimated signals. Our new approach expresses the measured data in tens of a hidden state equation describing MVAR cortical signal evolution and an observation equation that relates the hidden state to the surface measurements. We develop an expectation-maximization (EM) algorithm to find maximum likelihood estimates of the MVAR model parameters. Simulations show that this one-step approach performs significantly better than the conventional two-step approach at estimating the cortical signals and detecting functional connectivity between different cortical regions.
提出了一种基于表面脑电或脑磁图的多变量自回归(MVAR)模型估计方法。传统的方法首先试图解决反问题来估计皮层信号,然后对估计的信号拟合MVAR模型。我们的新方法用一个描述MVAR皮层信号演变的隐藏状态方程和一个将隐藏状态与表面测量联系起来的观察方程来表达测量数据。我们开发了一种期望最大化(EM)算法来寻找MVAR模型参数的最大似然估计。仿真结果表明,该方法在估计皮质信号和检测不同皮质区域之间的功能连通性方面明显优于传统的两步方法。
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引用次数: 4
期刊
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro
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