首页 > 最新文献

2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro最新文献

英文 中文
Registration of dynamic renal MR images using neurobiological model of saliency 应用显著性神经生物学模型的动态肾脏MR图像配准
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541197
D. Mahapatra, Ying Sun
In this paper we propose the use of a neurobiology-based saliency measure to improve the performance of a quantitative- qualitative measure of mutual information for rigid registration of 4D renal perfusion MR images. Our registration method assigns greater importance to more salient voxels by applying a soft thresholding function to normalized saliency values. The resulting saliency map is a better representation of what is truly visually salient than an entropy-based saliency map. Our tests on real patient datasets show that incorporating this saliency measure produces better registration results than traditional entropy-based approaches.
在本文中,我们提出使用基于神经生物学的显著性措施来提高定量-定性互信息措施的性能,用于4D肾灌注MR图像的刚性配准。我们的配准方法通过对标准化的显著性值应用软阈值函数来赋予更显著的体素更大的重要性。由此产生的显著性图比基于熵的显著性图更好地表示了真正的视觉显著性。我们对真实患者数据集的测试表明,结合这种显著性度量比传统的基于熵的方法产生更好的注册结果。
{"title":"Registration of dynamic renal MR images using neurobiological model of saliency","authors":"D. Mahapatra, Ying Sun","doi":"10.1109/ISBI.2008.4541197","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541197","url":null,"abstract":"In this paper we propose the use of a neurobiology-based saliency measure to improve the performance of a quantitative- qualitative measure of mutual information for rigid registration of 4D renal perfusion MR images. Our registration method assigns greater importance to more salient voxels by applying a soft thresholding function to normalized saliency values. The resulting saliency map is a better representation of what is truly visually salient than an entropy-based saliency map. Our tests on real patient datasets show that incorporating this saliency measure produces better registration results than traditional entropy-based approaches.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"199 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130826383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 43
Prediction of potential locations of focal adhesions on the contour of adherent cells 在贴壁细胞的轮廓上预测局灶粘连的潜在位置
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541044
Fritz Jetzek, E. Mylona, D. Manoussaki
Focal adhesions (FA) play a dominant role in determining adherent cell morphology. This is particularly true for FA close to the cell contour on a two-dimensional substrate, since they are required for stabilization of the elastic cell membrane protrusions. The identification of these FA yields valuable information about the shape and the general state of the cell. In the current paper, we present a new method that does not require FA staining - the method predicts FA locations based on cell contour morphology. Our method, which we term comparative Hough transform (CHT), derives from the linear Hough transform and offers a novel approach in identifying significant loci on the contour, where the lateral cell contour edges meet at a cusp.
局灶黏附(FA)在决定贴壁细胞形态中起主导作用。对于在二维基底上接近细胞轮廓的FA尤其如此,因为它们是稳定弹性细胞膜突起所必需的。这些FA的识别产生了关于细胞形状和一般状态的有价值的信息。在本文中,我们提出了一种不需要FA染色的新方法-该方法基于细胞轮廓形态预测FA的位置。我们的方法,我们称之为比较霍夫变换(CHT),源自线性霍夫变换,并提供了一种新的方法来识别轮廓上的重要位点,其中侧细胞轮廓边缘在尖端处相遇。
{"title":"Prediction of potential locations of focal adhesions on the contour of adherent cells","authors":"Fritz Jetzek, E. Mylona, D. Manoussaki","doi":"10.1109/ISBI.2008.4541044","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541044","url":null,"abstract":"Focal adhesions (FA) play a dominant role in determining adherent cell morphology. This is particularly true for FA close to the cell contour on a two-dimensional substrate, since they are required for stabilization of the elastic cell membrane protrusions. The identification of these FA yields valuable information about the shape and the general state of the cell. In the current paper, we present a new method that does not require FA staining - the method predicts FA locations based on cell contour morphology. Our method, which we term comparative Hough transform (CHT), derives from the linear Hough transform and offers a novel approach in identifying significant loci on the contour, where the lateral cell contour edges meet at a cusp.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131031589","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correcting surface coil intensity inhomogeneity improves quantitative analysis of cardiac magnetic resonance images 纠正表面线圈强度不均匀性提高了心脏磁共振图像的定量分析
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541274
L. Hsu, A. Aletras, A. Arai
Quantitative analysis of cardiac magnetic resonance (MR) images is important in bringing objectivity in diagnosis of myocardial abnormalities. Prior to quantitative analysis, it is necessary to correct signal intensity inhomogeneity due to the non-uniform surface coil sensitivity profile. We present a method using non-rigid body image warping and polynomial function fitting to correct this intensity bias on imperfectly registered cardiac MR images. The method was validated on normal human MR images and significantly reduced signal variation from 20.0% to 3.9% in regions of normal myocardium. In MR images of acute myocardial infarction in dogs, signal intensity analysis detected edematous myocardium as 35.9% brighter than normal myocardium on T2- weighted images (p=0.002) while control regions of interest on PD-weighted images were uniform within 2.2% (p=NS). The proposed approach effectively corrected surface coil related signal intensity inhomogeneity in imperfect datasets and allowed confident detection of subtle pathophysiological abnormalities.
心脏磁共振图像的定量分析对于客观诊断心肌异常具有重要意义。在定量分析之前,有必要纠正由于表面线圈灵敏度分布不均匀而导致的信号强度不均匀性。我们提出了一种使用非刚体图像扭曲和多项式函数拟合的方法来纠正不完美配准的心脏MR图像上的这种强度偏差。该方法在正常人的MR图像上得到了验证,并将正常心肌区域的信号变异从20.0%显著降低到3.9%。在犬急性心肌梗死的MR图像中,信号强度分析发现,在T2加权图像上,水肿心肌比正常心肌亮35.9% (p=0.002),而在pd加权图像上,对照组感兴趣区域均匀分布在2.2%以内(p=NS)。所提出的方法有效地纠正了表面线圈相关的信号强度不均匀性,并允许对细微的病理生理异常进行自信的检测。
{"title":"Correcting surface coil intensity inhomogeneity improves quantitative analysis of cardiac magnetic resonance images","authors":"L. Hsu, A. Aletras, A. Arai","doi":"10.1109/ISBI.2008.4541274","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541274","url":null,"abstract":"Quantitative analysis of cardiac magnetic resonance (MR) images is important in bringing objectivity in diagnosis of myocardial abnormalities. Prior to quantitative analysis, it is necessary to correct signal intensity inhomogeneity due to the non-uniform surface coil sensitivity profile. We present a method using non-rigid body image warping and polynomial function fitting to correct this intensity bias on imperfectly registered cardiac MR images. The method was validated on normal human MR images and significantly reduced signal variation from 20.0% to 3.9% in regions of normal myocardium. In MR images of acute myocardial infarction in dogs, signal intensity analysis detected edematous myocardium as 35.9% brighter than normal myocardium on T2- weighted images (p=0.002) while control regions of interest on PD-weighted images were uniform within 2.2% (p=NS). The proposed approach effectively corrected surface coil related signal intensity inhomogeneity in imperfect datasets and allowed confident detection of subtle pathophysiological abnormalities.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"9 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130927646","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Minimum description length with local geometry 最小描述长度与局部几何
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541238
M. Styner, I. Oguz, T. Heimann, G. Gerig
Establishing optimal correspondence across object populations is essential to statistical shape analysis. Minimizing the description length (MDL) is a popular method for finding correspondence. In this work, we extend the MDL method by incorporating various local curvature metrics. Using local curvature can improve performance by ensuring that corresponding points exhibit similar local geometric characteristics that can't always be captured by mere point locations. We illustrate results on a variety of anatomical structures. The MDL method with a combination of point locations and curvature outperforms all the other methods we analyzed, including traditional MDL and spherical harmonics (SPHARM) correspondence, when the analyzed object population exhibits complex structure. When the objects are of simple nature, however, there's no added benefit to using the local curvature. In our experiments, we did not observe a significant difference in the correspondence quality when different curvature metrics (e.g. principal curvatures, mean curvature, Gaussian curvature) were used.
在对象群之间建立最佳对应关系对于统计形状分析至关重要。最小化描述长度(MDL)是查找对应关系的常用方法。在这项工作中,我们通过纳入各种局部曲率度量来扩展MDL方法。使用局部曲率可以提高性能,因为它确保相应的点具有相似的局部几何特征,而这些特征并不总是由单纯的点位置捕获。我们说明了各种解剖结构的结果。当被分析对象群体呈现复杂结构时,结合点位和曲率的MDL方法优于传统MDL和球面谐波(SPHARM)对应的所有其他方法。然而,当物体性质简单时,使用局部曲率没有额外的好处。在我们的实验中,当使用不同的曲率度量(如主曲率、平均曲率、高斯曲率)时,我们没有观察到通信质量的显着差异。
{"title":"Minimum description length with local geometry","authors":"M. Styner, I. Oguz, T. Heimann, G. Gerig","doi":"10.1109/ISBI.2008.4541238","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541238","url":null,"abstract":"Establishing optimal correspondence across object populations is essential to statistical shape analysis. Minimizing the description length (MDL) is a popular method for finding correspondence. In this work, we extend the MDL method by incorporating various local curvature metrics. Using local curvature can improve performance by ensuring that corresponding points exhibit similar local geometric characteristics that can't always be captured by mere point locations. We illustrate results on a variety of anatomical structures. The MDL method with a combination of point locations and curvature outperforms all the other methods we analyzed, including traditional MDL and spherical harmonics (SPHARM) correspondence, when the analyzed object population exhibits complex structure. When the objects are of simple nature, however, there's no added benefit to using the local curvature. In our experiments, we did not observe a significant difference in the correspondence quality when different curvature metrics (e.g. principal curvatures, mean curvature, Gaussian curvature) were used.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"45 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133430000","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
Estimation of respiratory waveform using an accelerometer 用加速度计估计呼吸波形
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541291
D. Pham, S. Bonnet, R. Guillemaud, E. Castelli, Pham Thi Ngoc Yen
The cardiorespiratory signal is a fundamental vital sign to assess a person's health. Additionally, the cardio-respiratory signal gives a great deal of information to healthcare providers wishing to monitor healthy individuals. This paper proposes a method to detect the respiratory waveform from an accelerometer strapped onto the chest. A system was designed and several experiments were conducted on volunteers. The acquisition is performed in different status: normal, apnea, deep breathing and also in different postures: vertical (sitting, standing) or horizontal (lying down). This method could therefore be suitable for automatic identification of some respiratory malfunction, for example during the obstructive apnea.
心肺信号是评估一个人健康状况的基本生命体征。此外,心肺信号为希望监测健康个体的医疗保健提供者提供了大量信息。本文提出了一种通过绑在胸口的加速度计检测呼吸波形的方法。设计了一个系统,并在志愿者身上进行了几次实验。在不同的状态下进行采集:正常、呼吸暂停、深呼吸,以及不同的姿势:垂直(坐着、站着)或水平(躺着)。因此,这种方法可能适用于某些呼吸功能障碍的自动识别,例如在阻塞性呼吸暂停期间。
{"title":"Estimation of respiratory waveform using an accelerometer","authors":"D. Pham, S. Bonnet, R. Guillemaud, E. Castelli, Pham Thi Ngoc Yen","doi":"10.1109/ISBI.2008.4541291","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541291","url":null,"abstract":"The cardiorespiratory signal is a fundamental vital sign to assess a person's health. Additionally, the cardio-respiratory signal gives a great deal of information to healthcare providers wishing to monitor healthy individuals. This paper proposes a method to detect the respiratory waveform from an accelerometer strapped onto the chest. A system was designed and several experiments were conducted on volunteers. The acquisition is performed in different status: normal, apnea, deep breathing and also in different postures: vertical (sitting, standing) or horizontal (lying down). This method could therefore be suitable for automatic identification of some respiratory malfunction, for example during the obstructive apnea.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"96 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132450510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 93
A learning based hierarchical model for vessel segmentation 基于学习的分层血管分割模型
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541181
R. Socher, Adrian Barbu, D. Comaniciu
In this paper we present a learning based method for vessel segmentation in angiographic videos. Vessel segmentation is an important task in medical imaging and has been investigated extensively in the past. Traditional approaches often require pre-processing steps, standard conditions or manually set seed points. Our method is automatic, fast and robust towards noise often seen in low radiation X-ray images. Furthermore, it can be easily trained and used for any kind of tubular structure. We formulate the segmentation task as a hierarchical learning problem over 3 levels: border points, cross-segments and vessel pieces, corresponding to the vessel's position, width and length. Following the marginal space learning paradigm the detection on each level is performed by a learned classifier. We use probabilistic boosting trees with Haar and steerable features. First results of segmenting the vessel which surrounds a guide wire in 200 frames are presented and future additions are discussed.
本文提出了一种基于学习的血管造影视频血管分割方法。血管分割是医学成像中的一项重要任务,在过去得到了广泛的研究。传统方法通常需要预处理步骤、标准条件或手动设置种子点。该方法对低辐射x射线图像中常见的噪声具有自动、快速和鲁棒性。此外,它可以很容易地训练和用于任何类型的管状结构。我们将分割任务制定为三个层次的分层学习问题:边界点,交叉段和容器块,对应于容器的位置,宽度和长度。遵循边际空间学习范式,每一层的检测由学习到的分类器执行。我们使用带有Haar和可操纵特征的概率增强树。本文介绍了在200个框架中对围绕导丝的容器进行分割的初步结果,并讨论了未来的补充内容。
{"title":"A learning based hierarchical model for vessel segmentation","authors":"R. Socher, Adrian Barbu, D. Comaniciu","doi":"10.1109/ISBI.2008.4541181","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541181","url":null,"abstract":"In this paper we present a learning based method for vessel segmentation in angiographic videos. Vessel segmentation is an important task in medical imaging and has been investigated extensively in the past. Traditional approaches often require pre-processing steps, standard conditions or manually set seed points. Our method is automatic, fast and robust towards noise often seen in low radiation X-ray images. Furthermore, it can be easily trained and used for any kind of tubular structure. We formulate the segmentation task as a hierarchical learning problem over 3 levels: border points, cross-segments and vessel pieces, corresponding to the vessel's position, width and length. Following the marginal space learning paradigm the detection on each level is performed by a learned classifier. We use probabilistic boosting trees with Haar and steerable features. First results of segmenting the vessel which surrounds a guide wire in 200 frames are presented and future additions are discussed.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"6 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128808615","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 22
Organ approximation in μCT data with low soft tissue contrast using an articulated whole-body atlas 利用关节式全身图谱在低软组织对比度的μCT数据中进行器官近似
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541234
M. Baiker, J. Dijkstra, I. Que, C. Löwik, J. Reiber, B. Lelieveldt
In this article, we present an approach for organ approximation in low contrast muCT data of mice using a whole-body mouse atlas (Segars et al. [1]). Starting from a set of landmarks on bone and joint locations, further correspondences are derived on surface representations of the lung by atlas-based registration and on the skin by employing a local geodesic shape context. Subsequently, landmarks on the skeleton, the lung and the skin are used to constrain a Thin-Plate-Spline (TPS) based mapping of major organs from the atlas to the subject domain. The feasibility of the method has been tested by means of 26 CT mouse datasets and a different whole-body mouse atlas (Digimouse [2]). Proper mapping of the lung and the skin as well as major organs could be achieved in all cases yielding a mean Euclidean distance between surface nodes of 0.42 plusmn 0.068 mm for the lung and 0.34 plusmn 0.036 mm for the skin. The performance of the organ interpolation has been assessed on basis of manual segmentations of two CT datasets of mice with injected contrast agent and the Digimouse. The calculated dice indices of volume overlap show significant improvement compared to earlier studies.
在本文中,我们提出了一种利用小鼠全身图谱对小鼠低对比度muCT数据进行器官近似的方法(Segars等人[1])。从骨骼和关节位置的一组地标开始,通过基于地图集的配准在肺的表面表示上得到进一步的对应,并通过采用局部测地线形状上下文在皮肤上得到进一步的对应。随后,使用骨骼、肺和皮肤上的标记来约束基于薄板样条(TPS)的主要器官从图谱到主题域的映射。该方法的可行性已通过26个CT小鼠数据集和不同的全身小鼠图谱进行了测试(Digimouse[2])。在所有病例中,肺和皮肤以及主要器官的正确映射都可以实现,肺表面节点之间的平均欧氏距离为0.42 plusmn 0.068 mm,皮肤为0.34 plusmn 0.036 mm。通过对注射造影剂和Digimouse的两组小鼠CT数据集进行人工分割,评估了器官插值的性能。计算得到的骰子体积重叠指数与前期研究相比有显著提高。
{"title":"Organ approximation in μCT data with low soft tissue contrast using an articulated whole-body atlas","authors":"M. Baiker, J. Dijkstra, I. Que, C. Löwik, J. Reiber, B. Lelieveldt","doi":"10.1109/ISBI.2008.4541234","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541234","url":null,"abstract":"In this article, we present an approach for organ approximation in low contrast muCT data of mice using a whole-body mouse atlas (Segars et al. [1]). Starting from a set of landmarks on bone and joint locations, further correspondences are derived on surface representations of the lung by atlas-based registration and on the skin by employing a local geodesic shape context. Subsequently, landmarks on the skeleton, the lung and the skin are used to constrain a Thin-Plate-Spline (TPS) based mapping of major organs from the atlas to the subject domain. The feasibility of the method has been tested by means of 26 CT mouse datasets and a different whole-body mouse atlas (Digimouse [2]). Proper mapping of the lung and the skin as well as major organs could be achieved in all cases yielding a mean Euclidean distance between surface nodes of 0.42 plusmn 0.068 mm for the lung and 0.34 plusmn 0.036 mm for the skin. The performance of the organ interpolation has been assessed on basis of manual segmentations of two CT datasets of mice with injected contrast agent and the Digimouse. The calculated dice indices of volume overlap show significant improvement compared to earlier studies.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131303377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 17
Improved spiral sense reconstruction using a multiscale wavelet model 基于多尺度小波模型的改进螺旋感重建
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541294
Bo Liu, E. Abdelsalam, J. Sheng, L. Ying
SENSE has been widely accepted and extensively studied in the community of parallel MRI. Although many regularization approaches have been developed to address the ill-conditioning problem for Cartesian SENSE, fewer efforts have been made to address this problem when the sampling trajectory is non-Cartesian. For non-Cartesian SENSE using the iterative conjugate gradient method, ill- conditioning can degrade not only the signal-to-noise ratio, but also the convergence behavior. This paper proposes a regularization technique for non-Cartesian SENSE using a multiscale wavelet model. The technique models the desired image as a random field whose wavelet transform coefficients obey a generalized Gaussian distribution. The effectiveness of the proposed method has been validated by in vivo experiments.
在平行核磁共振界,SENSE已被广泛接受和广泛研究。尽管已经开发了许多正则化方法来解决笛卡尔感知的病态问题,但当采样轨迹是非笛卡尔轨迹时,解决这一问题的努力较少。对于采用迭代共轭梯度法的非笛卡儿传感器,不适调理不仅会降低信噪比,而且会降低收敛性。本文提出了一种基于多尺度小波模型的非笛卡儿传感器正则化技术。该技术将期望图像建模为小波变换系数服从广义高斯分布的随机场。通过体内实验验证了该方法的有效性。
{"title":"Improved spiral sense reconstruction using a multiscale wavelet model","authors":"Bo Liu, E. Abdelsalam, J. Sheng, L. Ying","doi":"10.1109/ISBI.2008.4541294","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541294","url":null,"abstract":"SENSE has been widely accepted and extensively studied in the community of parallel MRI. Although many regularization approaches have been developed to address the ill-conditioning problem for Cartesian SENSE, fewer efforts have been made to address this problem when the sampling trajectory is non-Cartesian. For non-Cartesian SENSE using the iterative conjugate gradient method, ill- conditioning can degrade not only the signal-to-noise ratio, but also the convergence behavior. This paper proposes a regularization technique for non-Cartesian SENSE using a multiscale wavelet model. The technique models the desired image as a random field whose wavelet transform coefficients obey a generalized Gaussian distribution. The effectiveness of the proposed method has been validated by in vivo experiments.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"119 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115752406","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Three dimensional modeling of the left ventricle of the heart using spherical harmonic analysis 利用球谐分析对心脏左心室进行三维建模
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541236
W. B. H. Khelifa, A. Abdallah, F. Ghorbel
Myocardial scintigraphy SPECT (single photon emission computed tomography) is a functional imaging modality which is performed at stress and rest. The diagnosis is obtained by comparing myocardium blood flow at these two different patient states. We propose to add at this technique completely non invasive anatomical data to avoid the use of invasive modalities like coronarography for example. For this purpose, we intend to extend the powerful technique of 2D Fourier descriptor to 3D objects by modeling the left ventricle at stress and at rest using the spherical harmonic descriptors so as to provide quantitative information to the physician to evaluate the extent of an eventual ischemia.
心肌闪烁成像SPECT(单光子发射计算机断层扫描)是一种在应力和静止状态下进行的功能成像方式。通过比较这两种不同患者状态下的心肌血流得出诊断。我们建议在这项技术中加入完全非侵入性的解剖数据,以避免使用侵入性的方式,例如冠状造影。为此,我们打算将2D傅里叶描述符的强大技术扩展到3D对象,通过使用球面谐波描述符对左心室在压力和静止状态下的建模,从而为医生提供定量信息,以评估最终缺血的程度。
{"title":"Three dimensional modeling of the left ventricle of the heart using spherical harmonic analysis","authors":"W. B. H. Khelifa, A. Abdallah, F. Ghorbel","doi":"10.1109/ISBI.2008.4541236","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541236","url":null,"abstract":"Myocardial scintigraphy SPECT (single photon emission computed tomography) is a functional imaging modality which is performed at stress and rest. The diagnosis is obtained by comparing myocardium blood flow at these two different patient states. We propose to add at this technique completely non invasive anatomical data to avoid the use of invasive modalities like coronarography for example. For this purpose, we intend to extend the powerful technique of 2D Fourier descriptor to 3D objects by modeling the left ventricle at stress and at rest using the spherical harmonic descriptors so as to provide quantitative information to the physician to evaluate the extent of an eventual ischemia.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"157 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115789398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 16
A spline-based forward model for Optical Diffuse Tomography 基于样条的光学漫射层析成像正演模型
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541013
Jean-Charles Baritaux, C. Seelamantula, M. Unser
Reconstruction algorithms for Optical Diffuse Tomography (ODT) rely heavily on fast and accurate forward models. Arbitrary geometries and boundary conditions need to be handled rigorously since they are the only input to the inverse problem. From this perspective, Finite Element Methods (FEM) are good candidates to implement a forward model. However, these methods require to mesh the domain of interest, which is impractical on a routine basis. The other downside of the FEM is that the basis functions are often not compatible with the ones used for solving the inverse problem, which typically have less degrees of freedom. In this work, we tackle the 2D problem, and propose a forward model that uses a mesh-free discretization based on linear B-Splines. It combines the advantages of the FEM, while offering a fast and much simpler way of handling complex geometries. Another motivation for this work is that the underlying B-spline model is equally suitable for the subsequent reconstruction part of the process (solving the inverse problem). In particular, it is compatible with wavelets and multiresolution-type signal representations.
光学漫射层析成像(ODT)的重建算法在很大程度上依赖于快速准确的正演模型。任意几何和边界条件需要严格处理,因为它们是反问题的唯一输入。从这个角度来看,有限元方法(FEM)是实现正演模型的良好候选者。然而,这些方法需要对感兴趣的域进行网格化,这在日常基础上是不切实际的。FEM的另一个缺点是基函数通常与用于求解逆问题的基函数不兼容,后者通常具有较小的自由度。在这项工作中,我们解决了二维问题,并提出了一个使用基于线性b样条的无网格离散化的正演模型。它结合了FEM的优点,同时提供了处理复杂几何形状的快速和更简单的方法。这项工作的另一个动机是底层b样条模型同样适用于过程的后续重建部分(解决逆问题)。特别是,它与小波和多分辨率类型的信号表示兼容。
{"title":"A spline-based forward model for Optical Diffuse Tomography","authors":"Jean-Charles Baritaux, C. Seelamantula, M. Unser","doi":"10.1109/ISBI.2008.4541013","DOIUrl":"https://doi.org/10.1109/ISBI.2008.4541013","url":null,"abstract":"Reconstruction algorithms for Optical Diffuse Tomography (ODT) rely heavily on fast and accurate forward models. Arbitrary geometries and boundary conditions need to be handled rigorously since they are the only input to the inverse problem. From this perspective, Finite Element Methods (FEM) are good candidates to implement a forward model. However, these methods require to mesh the domain of interest, which is impractical on a routine basis. The other downside of the FEM is that the basis functions are often not compatible with the ones used for solving the inverse problem, which typically have less degrees of freedom. In this work, we tackle the 2D problem, and propose a forward model that uses a mesh-free discretization based on linear B-Splines. It combines the advantages of the FEM, while offering a fast and much simpler way of handling complex geometries. Another motivation for this work is that the underlying B-spline model is equally suitable for the subsequent reconstruction part of the process (solving the inverse problem). In particular, it is compatible with wavelets and multiresolution-type signal representations.","PeriodicalId":184204,"journal":{"name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"178 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2008-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116009765","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
期刊
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1