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2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro最新文献

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Liver metastasis early detection using fMRI based statistical model 基于fMRI统计模型的肝转移早期检测
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541063
M. Freiman, Y. Edrei, E. Gross, Leo Joskowicz, R. Abramovitch
We present a novel method for computer aided early detection of liver metastases. The method used fMRI-based statistical modeling to characterize colorectal hepatic metastases and follow their early hemodynamical changes. Changes in hepatic hemodynamics were evaluated from T2*-W fMRI images acquired during the breathing of air, air-CO2, and carbogen. A classification model was built to differentiate between metastatic and healthy liver tissue. The model was constructed from 128 validated fMRI samples of metastatic and healthy mice liver tissue using histogram-based features and SVM classification engine. The model was subsequently tested with a set of 32 early, non-validated fMRI samples. Our model yielded an accuracy of 84.38% with 80% precision.
我们提出了一种计算机辅助早期检测肝转移的新方法。该方法采用基于功能磁共振成像的统计建模来表征结直肠肝转移,并跟踪其早期血流动力学变化。通过呼吸空气、空气-二氧化碳和碳时获得的T2*-W fMRI图像来评估肝脏血流动力学的变化。建立了一个分类模型来区分转移性和健康肝组织。该模型采用基于直方图的特征和SVM分类引擎,从128个经验证的转移性和健康小鼠肝组织fMRI样本中构建。该模型随后用一组32个早期的、未经验证的fMRI样本进行了测试。我们的模型的准确率为84.38%,精确度为80%。
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引用次数: 6
Regularization of diffusion tensor images 扩散张量图像的正则化
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541151
J. Cisternas, T. Asahi, M. Gálvez, G. Rojas
We present a regularization scheme for diffusion tensor images, that respects the geometrical structure of diffusion ellipsoids and does not introduce artifacts such as anisotropy drops. The method can be stated as a variational problem and solved by means of a gradient flow. The main ingredient is the notion of a distance between two ellipsoids that considers differences in shape as well as differences in orientation. The method is specialized to the case of cylindrically-symmetric ellipsoids and implemented in terms of ordinary vector manipulations such as cross and dot products. The regularization algorithm is tested using a synthetic tensor field and a dataset acquired from a diffusion phantom. In both cases the algorithm was able to reduce the noise from the tensor field.
提出了一种尊重扩散椭球几何结构的扩散张量图像正则化方案,该方案不引入诸如各向异性滴等伪影。该方法可以表述为一个变分问题,并通过梯度流来求解。主要成分是两个椭球体之间的距离概念,它考虑了形状和方向的差异。该方法是专门针对圆柱对称椭球体的情况,并实现了普通的矢量操作,如叉乘和点积。利用合成张量场和扩散模体数据集对正则化算法进行了测试。在这两种情况下,该算法都能够降低张量场的噪声。
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引用次数: 1
Computer-assisted and image-guided abdominal interventions 计算机辅助和图像引导的腹部干预
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541262
K. Cleary, Jill Bruno, Jason Wright, F. Banovac
This paper gives an overview of computer-assisted and image-guided systems for abdominal interventions. Computer-assisted means that the power of the computer is used to provide the physician a virtual reality view of the anatomy. Image-guided means that the intervention is carried out based on imaging modalities such as CT, MM, and ultrasound. These minimally invasive procedures are rapidly increasing in popularity as they cause less trauma to the patient and the technology to carry them out continues to improve.
本文概述了用于腹部干预的计算机辅助和图像引导系统。计算机辅助是指利用计算机的能力为医生提供解剖学的虚拟现实视图。图像引导是指基于CT、MM和超声等成像方式进行干预。这些微创手术正迅速普及,因为它们对患者造成的创伤较小,而且实施这些手术的技术也在不断改进。
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引用次数: 2
Fluorescence tomography: Reconstruction by iterative methods 荧光断层扫描:迭代法重建
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541107
E. Miqueles, A. R. Pierro
X-Ray fluorescence computed tomography (XFCT) aims at reconstructing fluorescence density from emission data given the measured X-Ray attenuation. In this paper, inspired by emission tomography (ECT) reconstruction literature, we propose and compare different reconstruction methods for XFCT, based on iteratively inverting the generalized attenuated Radon transform. We compare the different approaches using simulated and real data as well.
x射线荧光计算机断层扫描(XFCT)的目的是在给定测量的x射线衰减的情况下,从发射数据重建荧光密度。本文受发射层析成像(ECT)重建文献的启发,提出并比较了基于迭代反演广义衰减Radon变换的XFCT重建方法。我们还使用模拟数据和真实数据比较了不同的方法。
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引用次数: 9
A statistical image-based approach for the 3D reconstruction of the scoliotic spine from biplanar radiographs 基于统计图像的方法从双平面x线片对脊柱侧凸进行三维重建
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541082
S. Kadoury, F. Cheriet, H. Labelle
In this paper, we propose a hybrid approach using a statistical 3D model of the spine generated from a database of 732 scoliotic patients with high-level anatomical primitives identified and matched on biplanar radiographic images for the three-dimensional reconstruction of the scoliotic spine. The 3D scoliotic curve reconstructed from a coronal and sagittal radiograph is used to generate an approximate statistical model based on a transformation algorithm which incorporates intuitive geometrical properties. An iterative optimization procedure integrating similarity measures such as deformable vertebral contours and epipolar constraints is then applied to globally refine the 3D anatomical landmarks on each vertebra level of the spine. A qualitative evaluation of the retro-projection of the vertebral contours obtained from the proposed method gave promising results while the quantitative comparison yield similar accuracy on the localization of low-level primitives such as the six landmarks identified by an expert on each vertebra.
在本文中,我们提出了一种混合方法,使用从732名脊柱侧凸患者的数据库中生成的脊柱统计3D模型,并在双平面放射图像上识别和匹配高水平解剖基元,用于脊柱侧凸的三维重建。利用冠状位和矢状位x线片重建的三维脊柱侧弯曲线,基于结合直观几何特性的变换算法生成近似统计模型。然后应用迭代优化程序集成相似性度量(如可变形的椎体轮廓和极外约束)来全局细化脊柱每个椎体水平上的3D解剖标志。从所提出的方法中获得的椎体轮廓的反向投影的定性评估给出了有希望的结果,而定量比较在低级原语(如专家在每个椎体上识别的六个地标)的定位上产生了类似的准确性。
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引用次数: 13
Mapping genetic influences on brain fiber architecture with high angular resolution diffusion imaging (HARDI) 利用高角分辨率扩散成像(HARDI)定位遗传对脑纤维结构的影响
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541135
M. Chiang, M. Barysheva, Agatha D. Lee, S. Madsen, A. Klunder, A. Toga, K. Mcmahon, G. Zubicaray, M. Meredith, M. Wright, Anuj Srivastava, N. Balov, P. Thompson
We report the first 3D maps of genetic effects on brain fiber complexity. We analyzed HARDI brain imaging data from 90 young adult twins using an information-theoretic measure, the Jensen-Shannon divergence (JSD), to gauge the regional complexity of the white matter fiber orientation distribution functions (ODF). HARDI data were fluidly registered using Karcher means and ODF square-roots for interpolation; each subject's JSD map was computed from the spatial coherence of the ODFs in each voxel's neighborhood. We evaluated the genetic influences on generalized fiber anisotropy (GFA) and complexity (JSD) using structural equation models (SEM). At each voxel, genetic and environmental components of data variation were estimated, and their goodness of fit tested by permutation. Color- coded maps revealed that the optimal models varied for different brain regions. Fiber complexity was predominantly under genetic control, and was higher in more highly anisotropic regions. These methods show promise for discovering factors affecting fiber connectivity in the brain.
我们报告了遗传对大脑纤维复杂性影响的第一个3D地图。我们分析了来自90名年轻成年双胞胎的HARDI脑成像数据,使用信息理论测量,Jensen-Shannon散度(JSD),以衡量白质纤维取向分布函数(ODF)的区域复杂性。HARDI数据采用Karcher均值和ODF平方根进行流态配准;每个受试者的JSD地图是根据每个体素的邻域odf的空间相干性计算的。我们利用结构方程模型(SEM)评估了遗传对广义纤维各向异性(GFA)和复杂性(JSD)的影响。在每个体素上,估计数据变异的遗传和环境成分,并通过排列检验它们的拟合优度。颜色编码的地图显示,不同的大脑区域有不同的最佳模型。纤维复杂性主要受遗传控制,在各向异性越强的地区纤维复杂性越高。这些方法有望发现影响大脑纤维连接的因素。
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引用次数: 21
Multi-organ automatic segmentation in 4D contrast-enhanced abdominal CT 腹部CT 4D增强多器官自动分割
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4540928
M. Linguraru, R. Summers
Medical imaging and computer-aided diagnosis (CAD) traditionally focus on organ- or disease-based applications. To shift from organ-based to organism-based approaches, CAD needs to replicate the work of radiologists and analyze consecutively multiple organs. A fully automatic method is presented for the simultaneous segmentation of four abdominal organs from 4D CT data. Abdominal contrast- enhanced CT scans from sixteen patients were obtained at three phases: non-contrast, arterial and portal. Intra- patient data is registered non-rigidly using the demons algorithm and smoothed with anisotropic diffusion. Mutual information accounts for intensity variability within the same organ during subsequent acquisitions and data are interpolated with cubic B-splines. Then heterogeneous erosion is applied to multi-phase data using the intensity characteristics of the liver, spleen, and kidneys. The erosion filter is a 4D convolution that preserves only image regions that satisfy the above intensity criteria. Finally, a geodesic level set completes the segmentation of the four abdominal organs. This 3D evaluation of abdominal data shows great promise as a computer-aided radiology tool for multi-organ and multi-disease analysis.
医学成像和计算机辅助诊断(CAD)传统上侧重于基于器官或疾病的应用。为了从以器官为基础的方法转变为以生物体为基础的方法,CAD需要复制放射科医生的工作并连续分析多个器官。提出了一种从4D CT数据中同时分割腹部四个器官的全自动方法。对16例患者进行了腹部增强CT扫描,分为三个阶段:非对比期、动脉期和门静脉期。使用demons算法对患者内部数据进行非严格注册,并使用各向异性扩散进行平滑。在随后的采集过程中,相互信息解释了同一器官内的强度变化,数据用三次b样条插值。然后,利用肝、脾和肾的强度特征,将非均匀侵蚀应用于多相数据。侵蚀滤波器是一个4D卷积,只保留满足上述强度标准的图像区域。最后,用测地线水平集完成对四个腹部器官的分割。这种腹部数据的三维评估显示了作为多器官和多疾病分析的计算机辅助放射学工具的巨大前景。
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引用次数: 25
Inferring functional connectivity using spatial modulation measures of fMRI signals within brain regions of interest 利用功能磁共振成像信号在感兴趣的大脑区域的空间调制措施推断功能连接
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541060
B. Ng, R. Abugharbieh, M. McKeown
We propose inferring functional connectivity between brain regions by examining the spatial modulation of the blood oxygen level dependent (BOLD) signals within brain regions of interest (ROIs). This is motivated by our previous work, where the spatial distribution of BOLD signals within an ROI was found to be modulated by task. Applying replicator dynamics to our proposed spatial feature time courses on real functional magnetic resonance imaging (fMRI) data detected task-related changes in the composition of the brain's functional networks, whereas using classical mean intensity features resulted in little changes being detected. Thus, our results suggest that intensity is not the only co- activating feature in fMRI data. Instead, spatial modulations may also be used for inferring functional connectivity.
我们建议通过检查脑感兴趣区域(roi)内血氧水平依赖(BOLD)信号的空间调制来推断脑区域之间的功能连接。这是由我们之前的工作激发的,在该工作中,ROI内BOLD信号的空间分布被发现是由任务调制的。将复制因子动力学应用于我们提出的基于真实功能磁共振成像(fMRI)数据的空间特征时间过程,可以检测到大脑功能网络组成中与任务相关的变化,而使用经典的平均强度特征只能检测到很少的变化。因此,我们的结果表明,强度并不是fMRI数据中唯一的共同激活特征。相反,空间调制也可用于推断功能连接。
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引用次数: 1
Multiframe sure-let denoising of timelapse fluorescence microscopy images 延时荧光显微图像的多帧确定性去噪
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4540954
Saskia Delpretti, F. Luisier, S. Ramani, T. Blu, M. Unser
Due to the random nature of photon emission and the various internal noise sources of the detectors, real timelapse fluorescence microscopy images are usually modeled as the sum of a Poisson process plus some Gaussian white noise. In this paper, we propose an adaptation of our SURE-LET denoising strategy to take advantage of the potentially strong similarities between adjacent frames of the observed image sequence. To stabilize the noise variance, we first apply the generalized Anscombe transform using suitable parameters automatically estimated from the observed data. With the proposed algorithm, we show that, in a reasonable computation time, real fluorescence timelapse microscopy images can be denoised with higher quality than conventional algorithms.
由于光子发射的随机性和探测器的各种内部噪声源,实时荧光显微镜图像通常被建模为泊松过程加一些高斯白噪声的和。在本文中,我们提出了一种自适应的SURE-LET去噪策略,以利用观察到的图像序列的相邻帧之间潜在的强相似性。为了稳定噪声方差,我们首先使用从观测数据中自动估计的合适参数进行广义Anscombe变换。通过提出的算法,我们表明,在合理的计算时间内,真实荧光延时显微镜图像的去噪质量比传统算法高。
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引用次数: 57
A fast thresholded Landweber algorithm for general wavelet bases: Application to 3D deconvolution microscopy 通用小波基的快速阈值Landweber算法:在三维反褶积显微镜中的应用
Pub Date : 2008-05-14 DOI: 10.1109/ISBI.2008.4541255
C. Vonesch, Michael Unser
Wavelet-domain lscr1-regularization is a promising approach to deconvolution. The corresponding variational problem can be solved using a "thresholded Landweber" (TL) algorithm. While this iterative procedure is simple to implement, it is known to converge slowly. In this paper, we give the principle of a modified algorithm that is substantially faster. The method is applicable to arbitrary wavelet representations, thus generalizing our previous work which was restricted to the or- thonormal Shannon wavelet basis. Numerical experiments show that we can obtain up to a 10-fold speed-up with respect to the existing TL algorithm, while providing the same restoration quality. We also present an example with real data that demonstrates the feasibility of wavelet-domain regularization for 3D deconvolution microscopy.
小波域lscr1正则化是一种很有前途的反褶积方法。相应的变分问题可以用“阈值Landweber”(TL)算法求解。虽然这个迭代过程很容易实现,但众所周知它收敛速度很慢。在本文中,我们给出了一个改进算法的原理,该算法大大加快了速度。该方法适用于任意小波表示,从而推广了我们以往局限于非正态香农小波基的工作。数值实验表明,与现有的TL算法相比,我们可以在提供相同恢复质量的情况下获得高达10倍的加速。最后给出了一个实际数据的例子,证明了小波域正则化用于三维反褶积显微镜的可行性。
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引用次数: 2
期刊
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro
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