首页 > 最新文献

Microbiology Indonesia最新文献

英文 中文
Physiological Profiling and Microorganism Community Analysis of Cirebon Shrimp Paste Fermentation “Terasi” using BIOLOGTM EcoPlate 利用BIOLOGTM EcoPlate分析环虾膏发酵“Terasi”的生理特征及微生物群落
Pub Date : 2018-05-24 DOI: 10.5454/mi.12.1.3
D. I. Astuti, I. Taufik, Dini Achnafani, Ezra Suci Priscila
Terasi or shrimp paste is an Indonesian traditional seasoning made from fermented small shrimp or krill. Different indigenous microorganism community exhibit different physiological function due to lack standard in its materials and processing. This study aimed to determine physiological profiles and microorganism community in Cirebon shrimp paste fermentation. BIOLOG TM EcoPlate was used to obtain microbial physiological function of the krill and 2-months old shrimp paste. Microorganisms were later isolated from EcoPlate substrate to determine its community structure. Average Well Color Development (AWCD) from krill was thirty times higher than shrimp paste. Interestingly, this study revealed a shift of carbon source utilization at day-28 of fermentation from amino acid and polymer to phenolic compound. In addition, AWCD index increased in accordance with increased of microorganism community complexity at day-28. Within 56 days of fermentation there was a slightly increase in water, fat, and carbohydrate content. In contrast, there was decrease in protein, ash content, and acidity level from neutral to acid, with salinity level resulted in between 16.26% to 21.42%. We conclude that there is a change of microorganism community within shrimp paste fermentation corresponding to metabolism activity which affects the product quality.
Terasi或虾酱是一种印尼传统的调味料,由发酵的小虾或磷虾制成。不同的原生微生物群落由于在原料和加工上的不规范而表现出不同的生理功能。本研究的目的是研究香波虾膏发酵过程中的生理特征和微生物群落。采用BIOLOG TM EcoPlate测定磷虾和2个月龄虾膏的微生物生理功能。随后从EcoPlate底物中分离微生物以确定其群落结构。磷虾的平均井色显度(AWCD)是虾酱的30倍。有趣的是,本研究揭示了碳源利用在发酵第28天从氨基酸和聚合物转变为酚类化合物。在第28天,AWCD指数随微生物群落复杂性的增加而增加。在发酵56天内,水、脂肪和碳水化合物含量略有增加。蛋白质、灰分含量和酸度均由中性向酸性降低,盐度在16.26% ~ 21.42%之间。综上所述,虾膏发酵过程中存在与代谢活性相对应的微生物群落变化,影响产品质量。
{"title":"Physiological Profiling and Microorganism Community Analysis of Cirebon Shrimp Paste Fermentation “Terasi” using BIOLOGTM EcoPlate","authors":"D. I. Astuti, I. Taufik, Dini Achnafani, Ezra Suci Priscila","doi":"10.5454/mi.12.1.3","DOIUrl":"https://doi.org/10.5454/mi.12.1.3","url":null,"abstract":"Terasi or shrimp paste is an Indonesian traditional seasoning made from fermented small shrimp or krill. Different indigenous microorganism community exhibit different physiological function due to lack standard in its materials and processing. This study aimed to determine physiological profiles and microorganism community in Cirebon shrimp paste fermentation. BIOLOG TM EcoPlate was used to obtain microbial physiological function of the krill and 2-months old shrimp paste. Microorganisms were later isolated from EcoPlate substrate to determine its community structure. Average Well Color Development (AWCD) from krill was thirty times higher than shrimp paste. Interestingly, this study revealed a shift of carbon source utilization at day-28 of fermentation from amino acid and polymer to phenolic compound. In addition, AWCD index increased in accordance with increased of microorganism community complexity at day-28. Within 56 days of fermentation there was a slightly increase in water, fat, and carbohydrate content. In contrast, there was decrease in protein, ash content, and acidity level from neutral to acid, with salinity level resulted in between 16.26% to 21.42%. We conclude that there is a change of microorganism community within shrimp paste fermentation corresponding to metabolism activity which affects the product quality.","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"12 1","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2018-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86008908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
THE EFFECT OF CARBON AND NITROGEN SUPPLEMENTATION ON BACTERIOCIN PRODUCTION OF LACTIC ACID BACTERIA FROM PICKLED YELLOW BAMBOO SHOOTS (Dendrocalamus asper) 补碳补氮对黄笋酸洗乳酸菌产菌素的影响
Pub Date : 2018-05-04 DOI: 10.5454/MI.12.1.2
Laksmi Hartajanie, L. Lindayani, Lorentia Santoso
Six selected lactic acid bacteria (LAB) isolates from pickled Yellow Betung bamboo shoots were grown in de Mann Rogosa Sharpe-Broth (MRSB) media with different supplementation combination. The cell-free supernatant were evaluated for their ability to produce bacteriocin  by adjusting its pH to 6.0 in order to remove organic acid effects. The bacteriocin activity was  assayed by agar-well diffusion method. The inhibitory activity calculated in Activity Unit (AU in mm 2 mL -1 ) of bacteriocins. The aims of this paper is to explore the effect of different medium compositions on bacteriocin production and its inhibitory activity against pathogenic bacteria ( Listeria monocytogenes FNCC 0156, S taphylococcus aureus FNCC 0047, and E scherichia coli FNCC 0091).Supplementations of carbon and nitrogen sources induced production of bacteriocins. LAB isolates grown in media without supplementation could not produce bacteriocins.  Growth of isolate D44 in the presence of 2% of glucose and 2% of yeast extract yielded the largest bacteriocin inhibitory activity levels of 3179 AU mL -1 against Listeria monocytogenes FNCC 0156, 4663 AU mL -1 against S taphylococcus aureus FNCC 0047, and 3109 AU mL -1 against E scherichia coli FNCC 0091.
从腌制黄竹笋中筛选出6株乳酸菌(LAB),在不同添加组合的MRSB培养基中进行培养。为了去除有机酸的影响,将无细胞上清液的pH调节到6.0,以评估其产生细菌素的能力。采用琼脂孔扩散法测定菌素活性。细菌素的抑菌活性以活性单位(AU单位:mm 2 mL -1)计算。本文旨在探讨不同培养基组成对细菌素产生的影响及其对病原菌(单核增生李斯特菌FNCC 0156、金黄色葡萄球菌FNCC 0047和大肠杆菌FNCC 0091)的抑制活性。补充碳源和氮源诱导细菌素的产生。培养基中培养的乳酸菌不产生细菌素。分离物D44在2%葡萄糖和2%酵母提取物的条件下生长,对单核增生李斯特菌FNCC 0156、金黄色葡萄球菌FNCC 0047和大肠杆菌FNCC 0091的抑菌活性最高,分别为3179 AU mL -1、4663 AU mL -1和3109 AU mL -1。
{"title":"THE EFFECT OF CARBON AND NITROGEN SUPPLEMENTATION ON BACTERIOCIN PRODUCTION OF LACTIC ACID BACTERIA FROM PICKLED YELLOW BAMBOO SHOOTS (Dendrocalamus asper)","authors":"Laksmi Hartajanie, L. Lindayani, Lorentia Santoso","doi":"10.5454/MI.12.1.2","DOIUrl":"https://doi.org/10.5454/MI.12.1.2","url":null,"abstract":"Six selected lactic acid bacteria (LAB) isolates from pickled Yellow Betung bamboo shoots were grown in de Mann Rogosa Sharpe-Broth (MRSB) media with different supplementation combination. The cell-free supernatant were evaluated for their ability to produce bacteriocin  by adjusting its pH to 6.0 in order to remove organic acid effects. The bacteriocin activity was  assayed by agar-well diffusion method. The inhibitory activity calculated in Activity Unit (AU in mm 2 mL -1 ) of bacteriocins. The aims of this paper is to explore the effect of different medium compositions on bacteriocin production and its inhibitory activity against pathogenic bacteria ( Listeria monocytogenes FNCC 0156, S taphylococcus aureus FNCC 0047, and E scherichia coli FNCC 0091).Supplementations of carbon and nitrogen sources induced production of bacteriocins. LAB isolates grown in media without supplementation could not produce bacteriocins.  Growth of isolate D44 in the presence of 2% of glucose and 2% of yeast extract yielded the largest bacteriocin inhibitory activity levels of 3179 AU mL -1 against Listeria monocytogenes FNCC 0156, 4663 AU mL -1 against S taphylococcus aureus FNCC 0047, and 3109 AU mL -1 against E scherichia coli FNCC 0091.","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"20 1","pages":"2-2"},"PeriodicalIF":0.0,"publicationDate":"2018-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84816890","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bacterial leaching of an Indonesian complex copper sulfide ore using an iron-oxidizing indigenous bacterium 利用铁氧化原生细菌对印度尼西亚复杂硫化铜矿石进行细菌浸出
Pub Date : 2018-05-04 DOI: 10.5454/MI.12.1.1
S. Chaerun, Frideni Yushandiana Putri, Wahyudin Prawita Minwal, Z. T. Ichlas, M. Z. Mubarok
The bioleaching of an Indonesian complex copper sulfide ore was studied in shake flasks over a period of 14 days using an iron-oxidizing indigenous bacterium at room temperature (28 o C) and various pulp densities (5% and 20%). The bioleaching suspensions were periodically analyzed for Cu and Fe concentrations as well as Eh, pH and DO values. Cu bioleaching efficiencies at 5% pulp density were higher than those at 20% pulp density, which correlated with Fe concentration in solution. Over a period of 14 days, the pH of bioleaching suspension was in the range of 5 ~ 9, indicating that Cu bioleaching was greatly influenced not only by proton H + dan ferric ion but also by extracellular polymeric substances (EPS) generated by the bacterium. The current study may improve our better understanding on the bacterial action for bioleaching of complex copper sulfide ores that remains debated so far as refractory ores.
在室温(28℃)和不同矿浆密度(5%和20%)下,用一种铁氧化原生细菌在摇瓶中进行了为期14天的印尼复杂硫化铜矿石的生物浸出研究。定期分析生物浸出悬浮液的Cu和Fe浓度以及Eh、pH和DO值。5%矿浆浓度下的Cu浸出效率高于20%矿浆浓度下的Cu浸出效率,且与溶液中Fe浓度相关。在14 d的时间内,生物浸出悬浮液的pH值在5 ~ 9范围内,表明细菌产生的胞外聚合物(EPS)不仅对铜的生物浸出有很大的影响,而且对氢铁离子(H + dan铁离子)也有很大的影响。目前的研究可能会提高我们对复杂硫化铜矿石生物浸出的细菌作用的更好理解,复杂硫化铜矿石作为难选矿石至今仍存在争议。
{"title":"Bacterial leaching of an Indonesian complex copper sulfide ore using an iron-oxidizing indigenous bacterium","authors":"S. Chaerun, Frideni Yushandiana Putri, Wahyudin Prawita Minwal, Z. T. Ichlas, M. Z. Mubarok","doi":"10.5454/MI.12.1.1","DOIUrl":"https://doi.org/10.5454/MI.12.1.1","url":null,"abstract":"The bioleaching of an Indonesian complex copper sulfide ore was studied in shake flasks over a period of 14 days using an iron-oxidizing indigenous bacterium at room temperature (28 o C) and various pulp densities (5% and 20%). The bioleaching suspensions were periodically analyzed for Cu and Fe concentrations as well as Eh, pH and DO values. Cu bioleaching efficiencies at 5% pulp density were higher than those at 20% pulp density, which correlated with Fe concentration in solution. Over a period of 14 days, the pH of bioleaching suspension was in the range of 5 ~ 9, indicating that Cu bioleaching was greatly influenced not only by proton H + dan ferric ion but also by extracellular polymeric substances (EPS) generated by the bacterium. The current study may improve our better understanding on the bacterial action for bioleaching of complex copper sulfide ores that remains debated so far as refractory ores.","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"68 1","pages":"1-1"},"PeriodicalIF":0.0,"publicationDate":"2018-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"85137403","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
ITA REGISTRATION FORM AND BACK COVER 这是登记表和封底
Pub Date : 2018-01-30 DOI: 10.5454/mi.11.2.%p
I. Helianti
{"title":"ITA REGISTRATION FORM AND BACK COVER","authors":"I. Helianti","doi":"10.5454/mi.11.2.%p","DOIUrl":"https://doi.org/10.5454/mi.11.2.%p","url":null,"abstract":"","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"181 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80284660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
The Administration of Pseudoalteromonas piscisida 1UB through Artemia sp. to Enhance Growth Performance, Immune Response and Resistance of White Shrimp (Litopenaeus vannamei) Larvae against Vibrio harveyi 经蒿属给药piscispseudoalteromonas 1UB提高凡纳滨对虾(Litopenaeus vannamei)幼虫对哈维弧菌的生长性能、免疫反应和抗性
Pub Date : 2018-01-01 DOI: 10.5454/MI.12.3.%P
W. Widanarni, Savini Retalia Sababalat, M. Yuhana, Diah A.S Utami
This study aimed to evaluate the effectiveness of the supplementation of Pseudoalteromonas piscisida 1UBthrough Artemia sp. to enhance the growth performance, immune response and the resistance of white shrimp ( Litopenaeus vannamei ) larvae to the infection of Vibrio harveyi . The natural feed given to the white shrimp larvae was Artemia sp. enriched with P. piscisida 1UB R at concentrations of 10 6 CFU mL -1 , 10 7 CFU mL -1 , 10 8 CFU mL -1 and a control ( Artemia sp. without any enrichment). The experimental shrimps (0.25±0.02 mg shrimp -1 ) were reared in the aquarium (25 × 20 × 30 cm) containing 4 L sea water with a stocking density of 30 shrimps L -1 . The experimental shrimps were fed the experimental feed from mysis 3 to PL12, and after that they were challenged with V. harveyi (10 7 CFU mL -1 )through an immersion method. The results of this study revealed that the administration of Artemia sp. enriched with P. piscisida 1UB could improve the survival, daily growth rate and absolute growth of length of white shrimp larvae. The activities of protease, lipase and amylase of white shrimp larvae treated with probiotic were higher (p<0.05) than those of the control. After the challenge test, white shrimp larvae treated with probiotic also had better survival and immune response (total hemocyte count, phagocytic activity, phenoloxidase activity and respiratory burst activity) than those of the the positive control. The best results were obtained in the probiotic application with a concentration of 10 8 CFU mL -1 .
本试验旨在评价通过青蒿素添加piscisida假异单胞菌1ubb对凡纳滨对虾(Litopenaeus vannamei)幼虾生长性能、免疫应答及对哈维弧菌(Vibrio harveyi)抗性的影响。白对虾幼虫的天然饲料为富含piscisida 1UB R的Artemia sp.,浓度分别为106 CFU mL - 1,107 CFU mL - 1,10 8 CFU mL -1和未富集的Artemia sp.。试验对虾(0.25±0.02 mg -虾-1)饲养在25 × 20 × 30 cm水族箱中,水族箱中含4 L海水,放养密度为30只虾-1。试验对虾从3号开始饲喂试验饲料至12号,然后通过浸渍法攻毒哈维氏弧菌(10 7 CFU mL -1)。本研究结果表明,添加富含piscisida 1UB的Artemia sp.可以提高白对虾的存活率、日生长率和绝对长高。经益生菌处理的白对虾幼虫蛋白酶、脂肪酶和淀粉酶活性均高于对照组(p<0.05)。攻毒试验后,经益生菌处理的白对虾幼虫的存活率和免疫应答(血细胞总数、吞噬活性、酚氧化酶活性和呼吸爆发活性)均高于阳性对照。以10 8 CFU mL -1浓度的益生菌施用效果最佳。
{"title":"The Administration of Pseudoalteromonas piscisida 1UB through Artemia sp. to Enhance Growth Performance, Immune Response and Resistance of White Shrimp (Litopenaeus vannamei) Larvae against Vibrio harveyi","authors":"W. Widanarni, Savini Retalia Sababalat, M. Yuhana, Diah A.S Utami","doi":"10.5454/MI.12.3.%P","DOIUrl":"https://doi.org/10.5454/MI.12.3.%P","url":null,"abstract":"This study aimed to evaluate the effectiveness of the supplementation of Pseudoalteromonas piscisida 1UBthrough Artemia sp. to enhance the growth performance, immune response and the resistance of white shrimp ( Litopenaeus vannamei ) larvae to the infection of Vibrio harveyi . The natural feed given to the white shrimp larvae was Artemia sp. enriched with P. piscisida 1UB R at concentrations of 10 6 CFU mL -1 , 10 7 CFU mL -1 , 10 8 CFU mL -1 and a control ( Artemia sp. without any enrichment). The experimental shrimps (0.25±0.02 mg shrimp -1 ) were reared in the aquarium (25 × 20 × 30 cm) containing 4 L sea water with a stocking density of 30 shrimps L -1 . The experimental shrimps were fed the experimental feed from mysis 3 to PL12, and after that they were challenged with V. harveyi (10 7 CFU mL -1 )through an immersion method. The results of this study revealed that the administration of Artemia sp. enriched with P. piscisida 1UB could improve the survival, daily growth rate and absolute growth of length of white shrimp larvae. The activities of protease, lipase and amylase of white shrimp larvae treated with probiotic were higher (p<0.05) than those of the control. After the challenge test, white shrimp larvae treated with probiotic also had better survival and immune response (total hemocyte count, phagocytic activity, phenoloxidase activity and respiratory burst activity) than those of the the positive control. The best results were obtained in the probiotic application with a concentration of 10 8 CFU mL -1 .","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"41 1","pages":"92-98"},"PeriodicalIF":0.0,"publicationDate":"2018-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"75237304","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
The Potency of Aluminum Hydroxide Nanoparticles for Dengue Subunit Vaccine Adjuvant 氢氧化铝纳米颗粒对登革热亚单位疫苗佐剂的效价研究
Pub Date : 2018-01-01 DOI: 10.5454/MI.12.3.5
S. Pambudi, E. Mardliyati, S. Rahmani, D. Setyawati, T. Widayanti, A. Gill, A. Sulfianti, Whinie Lestari
The potency of aluminum hydroxide as an adjuvant in vaccine development is considered to depend on its particle size. In previous studies, we have successfully prepared two size particle, micro, and nano, aluminum hydroxide gel (alum) adjuvants. The potency of those particles as a candidate of adjuvant is needed to be characterized. In this study, we formulated our adjuvants with purified DENV3 pre Membrane Envelope (prM-E) recombinant protein and evaluated the induction of nitric oxide level in mouse macrophage RAW 264.7 cells. We prepared the alum adjuvant by precipitation-homogenization methods with an agitation rate at 11,000xg. Secreted prM-E recombinant protein was collected from Pichia pastoris X-33 fermentation which produced using bioreactor. Recombinant protein purification was carried out by anion exchange chromatography followed with size exclusion chromatography. The purified prM-E recombinant protein was observed as a single band around 70 -1k Da with a concentration of 105 mg mL . Complex nanoparticles alum with prM-E protein significantly (p<0.05) induced the nitric oxide level. Further analysis should be conducted in order to discover the detail molecular mechanism of nanoparticle alum adjuvant, recombinant protein, and cellular immune response.
氢氧化铝在疫苗开发中作为佐剂的效力被认为取决于它的颗粒大小。在之前的研究中,我们已经成功制备了两种大小的颗粒,微型和纳米氢氧化铝凝胶(明矾)佐剂。这些颗粒作为候选佐剂的效力需要进行表征。在这项研究中,我们用纯化的DENV3前膜包膜(prM-E)重组蛋白配制佐剂,并评估了对小鼠巨噬细胞RAW 264.7细胞一氧化氮水平的诱导作用。采用沉淀-均质法制备明矾佐剂,搅拌速率为11000xg。利用毕赤酵母X-33进行生物反应器发酵,提取重组蛋白prM-E。重组蛋白的纯化采用阴离子交换层析和大小排斥层析。纯化后的prM-E重组蛋白在70 -1k Da左右呈单条带,浓度为105 mg mL。含prM-E蛋白的复合纳米明矾显著(p<0.05)诱导一氧化氮水平升高。纳米明矾佐剂、重组蛋白和细胞免疫应答的分子机制有待进一步分析。
{"title":"The Potency of Aluminum Hydroxide Nanoparticles for Dengue Subunit Vaccine Adjuvant","authors":"S. Pambudi, E. Mardliyati, S. Rahmani, D. Setyawati, T. Widayanti, A. Gill, A. Sulfianti, Whinie Lestari","doi":"10.5454/MI.12.3.5","DOIUrl":"https://doi.org/10.5454/MI.12.3.5","url":null,"abstract":"The potency of aluminum hydroxide as an adjuvant in vaccine development is considered to depend on its particle size. In previous studies, we have successfully prepared two size particle, micro, and nano, aluminum hydroxide gel (alum) adjuvants. The potency of those particles as a candidate of adjuvant is needed to be characterized. In this study, we formulated our adjuvants with purified DENV3 pre Membrane Envelope (prM-E) recombinant protein and evaluated the induction of nitric oxide level in mouse macrophage RAW 264.7 cells. We prepared the alum adjuvant by precipitation-homogenization methods with an agitation rate at 11,000xg. Secreted prM-E recombinant protein was collected from Pichia pastoris X-33 fermentation which produced using bioreactor. Recombinant protein purification was carried out by anion exchange chromatography followed with size exclusion chromatography. The purified prM-E recombinant protein was observed as a single band around 70 -1k Da with a concentration of 105 mg mL . Complex nanoparticles alum with prM-E protein significantly (p<0.05) induced the nitric oxide level. Further analysis should be conducted in order to discover the detail molecular mechanism of nanoparticle alum adjuvant, recombinant protein, and cellular immune response.","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"207 1","pages":"99-105"},"PeriodicalIF":0.0,"publicationDate":"2018-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83611833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Isolation and Urease Activity Test of Bacteria for Calcium Carbonate (Calcite) Precipitation (Biocementation) in Soil 土壤中碳酸钙(方解石)沉淀(生物胶结)细菌的分离及脲酶活性试验
Pub Date : 2018-01-01 DOI: 10.5454/MI.12.3.2
H. Ambarsari, A. Ridlo
The use of bacterial calcium carbonate (calcite) precipitation (biocementation) has recently become popular as a ground-improvement technique. Ureolytic bacteria having highly urease activities were known to have important roles in calcium carbonate precipitation process. One of our research objectives is to isolate and to select as many as possible such ureolytic bacteria from Indonesian soils to be further utilized for calcium carbonate (calcite) precipitation process in the soil for strengthening the soil structure. Isolation was performed anaerobically in selective media containing 40% urea. Four isolates with different morphologies were purified and coded as TK1, TK2, TK3, and TK4. Each of them was tested for its urease activity either as a pure culture or as a mixture of several cultures. The urease activity was measured based on the ammonia concentration produced in the growth media up to 7 x 24 hours. It was known that isolate TK4 had the highest urease activity on week 6, whilst a mixture of isolate cultures coded as TKC did not show a better urease activity than the isolate TK4. Hence, it could be concluded that the isolate TK4 was the best candidate to be used for further research on the calcium carbonate (calcite) precipitation process (biocementation) to strengthen the soil structure.
利用细菌碳酸钙(方解石)沉淀(生物胶结)最近成为一种流行的地面改善技术。具有高脲酶活性的解尿菌在碳酸钙沉淀过程中起重要作用。我们的研究目标之一是从印度尼西亚土壤中分离和选择尽可能多的这种解尿细菌,进一步利用在土壤中的碳酸钙(方解石)沉淀过程中,以加强土壤结构。在含40%尿素的选择性培养基中进行厌氧分离。分离得到4株形态各异的分离株,分别编码为TK1、TK2、TK3和TK4。每一种都作为纯培养物或作为几种培养物的混合物进行了脲酶活性测试。脲酶活性是根据生长培养基中产生的氨浓度达到7 × 24小时来测量的。已知分离物TK4在第6周具有最高的脲酶活性,而编码为TKC的分离物混合物的脲酶活性并不比分离物TK4更好。综上所述,分离物TK4最适合用于进一步研究碳酸钙(方解石)沉淀过程(生物胶结)对土壤结构的强化作用。
{"title":"Isolation and Urease Activity Test of Bacteria for Calcium Carbonate (Calcite) Precipitation (Biocementation) in Soil","authors":"H. Ambarsari, A. Ridlo","doi":"10.5454/MI.12.3.2","DOIUrl":"https://doi.org/10.5454/MI.12.3.2","url":null,"abstract":"The use of bacterial calcium carbonate (calcite) precipitation (biocementation) has recently become popular as a ground-improvement technique. Ureolytic bacteria having highly urease activities were known to have important roles in calcium carbonate precipitation process. One of our research objectives is to isolate and to select as many as possible such ureolytic bacteria from Indonesian soils to be further utilized for calcium carbonate (calcite) precipitation process in the soil for strengthening the soil structure. Isolation was performed anaerobically in selective media containing 40% urea. Four isolates with different morphologies were purified and coded as TK1, TK2, TK3, and TK4. Each of them was tested for its urease activity either as a pure culture or as a mixture of several cultures. The urease activity was measured based on the ammonia concentration produced in the growth media up to 7 x 24 hours. It was known that isolate TK4 had the highest urease activity on week 6, whilst a mixture of isolate cultures coded as TKC did not show a better urease activity than the isolate TK4. Hence, it could be concluded that the isolate TK4 was the best candidate to be used for further research on the calcium carbonate (calcite) precipitation process (biocementation) to strengthen the soil structure.","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"19 1","pages":"74-82"},"PeriodicalIF":0.0,"publicationDate":"2018-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76731985","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Oil Recovery Test Using Bio surfactant of Halo tolerant Bacteria Brevundimonas diminuta and Bhurkholderia glumae at variation of NaCl Salt Concentrations 耐光晕菌微短单胞菌和黄霍氏菌生物表面活性剂在不同NaCl盐浓度下采油试验
Pub Date : 2017-11-26 DOI: 10.5454/mi.11.3.2
B. Yudono, M. Said, S. Estuningsih, A. Karima
Oil recovery test has been done by using crude biosurfactant from Brevundimonas diminuta and Bhurkholderia glumae indigenous halo tolerant bacteria with the vatiation of NaCl salt concentration 0; 1.5; 3; 4.5; 6; and 7.5%. Oil recovery test was obtained by determining % TPH (Total Petrolem Hidrocarbon). The sample concentration was 28.19% TPH, it was extracted by using biosurfactant of  Brevundimonas diminuta and Bhurkholderia glumae bacteria, the optimal salitnity conditions were  at 3, 4.5% salt concentrations with the value oil recovery as much as 50.41, 69.97 % respectively. Oil components which extraction by biosurfactant were analyzed by using GC-MS ( Gas Chromatography-Mass Spectrophotometry) . The result from analyzes GC-MS could be concluded that bacteria Brevundimonas diminuta could dissolve hydrocarbon compounds short chain carbon atom at fraction C 22. C 22 according to the retention time.
采用小短单胞菌和绿斑霍尔德氏菌的天然生物表面活性剂,对不同NaCl盐浓度下的原油进行了采油试验;1.5;3;4.5;6;和7.5%。通过测定原油总含碳量(TPH)进行采收率试验。样品浓度为28.19% TPH,采用微短单胞菌和绿芽布氏菌生物表面活性剂进行提取,最佳盐浓度为3.4.5%,采收率分别为50.41%和69.97%。采用气相色谱-质谱联用技术对生物表面活性剂提取的油类成分进行了分析。气相色谱-质谱分析结果表明,小Brevundimonas diminuta能溶解c22段的烃类化合物短链碳原子。c22根据保留时间。
{"title":"Oil Recovery Test Using Bio surfactant of Halo tolerant Bacteria Brevundimonas diminuta and Bhurkholderia glumae at variation of NaCl Salt Concentrations","authors":"B. Yudono, M. Said, S. Estuningsih, A. Karima","doi":"10.5454/mi.11.3.2","DOIUrl":"https://doi.org/10.5454/mi.11.3.2","url":null,"abstract":"Oil recovery test has been done by using crude biosurfactant from Brevundimonas diminuta and Bhurkholderia glumae indigenous halo tolerant bacteria with the vatiation of NaCl salt concentration 0; 1.5; 3; 4.5; 6; and 7.5%. Oil recovery test was obtained by determining % TPH (Total Petrolem Hidrocarbon). The sample concentration was 28.19% TPH, it was extracted by using biosurfactant of  Brevundimonas diminuta and Bhurkholderia glumae bacteria, the optimal salitnity conditions were  at 3, 4.5% salt concentrations with the value oil recovery as much as 50.41, 69.97 % respectively. Oil components which extraction by biosurfactant were analyzed by using GC-MS ( Gas Chromatography-Mass Spectrophotometry) . The result from analyzes GC-MS could be concluded that bacteria Brevundimonas diminuta could dissolve hydrocarbon compounds short chain carbon atom at fraction C 22. C 22 according to the retention time.","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"56 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2017-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"78941850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Antibacterial Potentiality Testing of Pineapple Core Extract (Ananas comosus (L.) Merr) Against Methicillin-resistant Staphylococcus aureus (MRSA) with Vancomycin Control 菠萝核提取物的抑菌潜力试验万古霉素对照抗耐甲氧西林金黄色葡萄球菌(MRSA)
Pub Date : 2017-11-26 DOI: 10.5454/MI.11.3.3
B. P. Putra, D. Indiastuti, Deby Kusumaningrum
Staphylococcus aureus is one of major pathogens causing serious infection. Penicillin antibiotic is one of therapies against Staphylococcus infection. However, inadequate and irrational use of antibiotic causes resistance and emerges incidence of methicillin-resistant Staphylococcus aureus (MRSA). Herbal medicine from pineapple core extract is hopefully can reduce the incidence of antibiotics resistance. This research was conducted to investigate the antibacterial activity of pineapple core extract against MRSA. This research is true experimental with post-test controlled group design. Pineapple core was extracted by maceration method. Ethanol extract of pineapple core is dissolved with sterilized water and obtained concentration of 750, 500, 250, 187.5, 125, and 62.5 mg/ml. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) were determined by broth dilution test with five replications. Vancomycin was used as control group. MIC was observed visually by comparing turbidity of solutions after incubation at 37 o C for 24 hours. Then these solutions were cultured on nutrient agar plates at 37 o C for 24 hours. MBC was observed visually by inspecting the presence of bacterial colonies growth. The Minimum Inhibitory Concentration (MIC) could not be determined due to no turbidity changes. Vancomycin cannot be used for determining MIC. Cultures on nutrient agar plates had no colonies growth in concentrations of 750 and 500 mg/ml. Thus, the Minimum Bactericidal Concentration (MBC) was 500 mg/ml. Pineapple core extract contains bromelain, flavonoid, saponin, and tanin, which have antibacterial effect. In summary, pineapple core extract has antibacterial effect against methicillin-resistant Staphylococcus aureus (MRSA) with MBC of 500 mg/ml.
金黄色葡萄球菌是引起严重感染的主要病原菌之一。青霉素是治疗葡萄球菌感染的常用抗生素之一。然而,抗生素的不充分和不合理使用引起耐药性,并出现耐甲氧西林金黄色葡萄球菌(MRSA)。从菠萝核提取的草药有望减少抗生素耐药性的发生。本文研究了菠萝核提取物对MRSA的抑菌活性。本研究采用后测对照组设计,为真正意义上的实验。采用浸渍法提取菠萝核。菠萝核乙醇提取物用灭菌水溶解,得到浓度为750、500、250、187.5、125、62.5 mg/ml。通过5次重复的肉汤稀释试验,确定了最低抑菌浓度(MIC)和最低杀菌浓度(MBC)。以万古霉素为对照组。通过比较37℃孵育24小时后溶液的浊度,目测MIC。然后将这些溶液在37℃的营养琼脂板上培养24小时。通过观察菌落生长情况,目视观察MBC。由于没有浊度变化,无法测定最低抑制浓度(MIC)。万古霉素不能用于测定MIC。在750和500 mg/ml浓度的培养基上,培养物无菌落生长。最低杀菌浓度(MBC)为500 mg/ml。菠萝核提取物含有菠萝蛋白酶、类黄酮、皂苷、单宁等,具有抗菌作用。综上所述,菠萝核提取物对耐甲氧西林金黄色葡萄球菌(MRSA)具有抗菌作用,MBC为500 mg/ml。
{"title":"Antibacterial Potentiality Testing of Pineapple Core Extract (Ananas comosus (L.) Merr) Against Methicillin-resistant Staphylococcus aureus (MRSA) with Vancomycin Control","authors":"B. P. Putra, D. Indiastuti, Deby Kusumaningrum","doi":"10.5454/MI.11.3.3","DOIUrl":"https://doi.org/10.5454/MI.11.3.3","url":null,"abstract":"Staphylococcus aureus is one of major pathogens causing serious infection. Penicillin antibiotic is one of therapies against Staphylococcus infection. However, inadequate and irrational use of antibiotic causes resistance and emerges incidence of methicillin-resistant Staphylococcus aureus (MRSA). Herbal medicine from pineapple core extract is hopefully can reduce the incidence of antibiotics resistance. This research was conducted to investigate the antibacterial activity of pineapple core extract against MRSA. This research is true experimental with post-test controlled group design. Pineapple core was extracted by maceration method. Ethanol extract of pineapple core is dissolved with sterilized water and obtained concentration of 750, 500, 250, 187.5, 125, and 62.5 mg/ml. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) were determined by broth dilution test with five replications. Vancomycin was used as control group. MIC was observed visually by comparing turbidity of solutions after incubation at 37 o C for 24 hours. Then these solutions were cultured on nutrient agar plates at 37 o C for 24 hours. MBC was observed visually by inspecting the presence of bacterial colonies growth. The Minimum Inhibitory Concentration (MIC) could not be determined due to no turbidity changes. Vancomycin cannot be used for determining MIC. Cultures on nutrient agar plates had no colonies growth in concentrations of 750 and 500 mg/ml. Thus, the Minimum Bactericidal Concentration (MBC) was 500 mg/ml. Pineapple core extract contains bromelain, flavonoid, saponin, and tanin, which have antibacterial effect. In summary, pineapple core extract has antibacterial effect against methicillin-resistant Staphylococcus aureus (MRSA) with MBC of 500 mg/ml.","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"24 1","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2017-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87969116","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Dynamic Growth and Chemical Change of Mixed Cultures Inoculation on Tapioka Fermentation 接种混合培养物对木薯发酵的动态生长和化学变化
Pub Date : 2017-11-26 DOI: 10.5454/MI.11.3.5
M. E. Kustyawati, A. Rangga, S. Setyani
Lactobacillus plantarum and Saccharomyces cerevisiae possess several of extracellular and intracellular of enzymes beneficial to cassava fermentation. Tapioka (cassava starch) has limited uses in food industries due to its low pasting properties, therefore, biomodification by the use of fermentation is needed. The research was aimed to monitor the growth of Saccharomyces cerevisiae and L. plantarum during tapioca fermentation, and to evaluate the chemical change, of the fermented tapioka. Mixed cultures was inoculated at the designed concentration into tapioca suspension and incubated at room temperature (30±2 o C) in facultative aerobic condition for 0, 24, 48, 60, 72, 96, 120, and 144 h. The growth change of S . cerevisiae and L. plantarum was monitored, and the change of pH, residual sugar, and starch granule was investigate. The result showed that S. cerevisiae had longer lag phase as well as stationary than L. plantarum was ; nevertheless , they both reached log phase at the same time. Co-inoculated mixed cultures did not affect the change on pH and reducing sugar but increased pronouncely protein content at stationary period. Besides, there was sign of erosion to the structure of cassava starch granules which was an indication of changes in the pasting property of the cassava starch.
植物乳杆菌和酿酒酵母具有多种有利于木薯发酵的胞外和胞内酶。木薯淀粉在食品工业中的应用有限,由于其低糊化特性,因此需要使用发酵进行生物改性。本研究旨在监测木薯发酵过程中酿酒酵母和植物乳杆菌的生长情况,并评价发酵后木薯的化学变化。将混合培养物按设计浓度接种于木薯粉悬浮液中,在室温(30±2℃)条件下,同时好氧培养0、24、48、60、72、96、120和144 h。对酿酒酵母和植物乳杆菌进行监测,研究其pH、残糖和淀粉粒的变化。结果表明,酿酒酵母比植物乳杆菌具有更长的滞后期和静止期;然而,他们同时进入了日志阶段。共接种混合培养不影响pH和还原糖的变化,但在静止期显著增加了蛋白质含量。此外,木薯淀粉颗粒的结构有侵蚀的迹象,表明木薯淀粉的糊化性能发生了变化。
{"title":"The Dynamic Growth and Chemical Change of Mixed Cultures Inoculation on Tapioka Fermentation","authors":"M. E. Kustyawati, A. Rangga, S. Setyani","doi":"10.5454/MI.11.3.5","DOIUrl":"https://doi.org/10.5454/MI.11.3.5","url":null,"abstract":"Lactobacillus plantarum and Saccharomyces cerevisiae possess several of extracellular and intracellular of enzymes beneficial to cassava fermentation. Tapioka (cassava starch) has limited uses in food industries due to its low pasting properties, therefore, biomodification by the use of fermentation is needed. The research was aimed to monitor the growth of Saccharomyces cerevisiae and L. plantarum during tapioca fermentation, and to evaluate the chemical change, of the fermented tapioka. Mixed cultures was inoculated at the designed concentration into tapioca suspension and incubated at room temperature (30±2 o C) in facultative aerobic condition for 0, 24, 48, 60, 72, 96, 120, and 144 h. The growth change of S . cerevisiae and L. plantarum was monitored, and the change of pH, residual sugar, and starch granule was investigate. The result showed that S. cerevisiae had longer lag phase as well as stationary than L. plantarum was ; nevertheless , they both reached log phase at the same time. Co-inoculated mixed cultures did not affect the change on pH and reducing sugar but increased pronouncely protein content at stationary period. Besides, there was sign of erosion to the structure of cassava starch granules which was an indication of changes in the pasting property of the cassava starch.","PeriodicalId":18546,"journal":{"name":"Microbiology Indonesia","volume":"33 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2017-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89459711","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Microbiology Indonesia
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1