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Proteomic characterization of Pseudogymnoascus spp. isolates from polar and temperate regions. 极地和温带地区假丝酵母菌属分离物的蛋白质组特征。
IF 2.8 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-01 Epub Date: 2024-03-14 DOI: 10.1080/00275514.2024.2313429
Nurlizah Abu Bakar, Benjamin Lau Yii Chung, Jerzy Smykla, Saiful Anuar Karsani, Siti Aisyah Alias

Proteomics has been used extensively in the field of mycology, mainly in trying to understand the complex network of protein-protein interactions that has been implicated in the molecular functions of fungi. It is also a useful tool to compare metabolic differences within a genus. Species of Pseudogymnoascus, a genus under the phyla Ascomycota, have been shown to play an important role in the soil environment. They have been found in both polar and temperate regions and are a known producer of many extracellular hydrolases that contribute to soil decomposition. Despite the apparent importance of Pseudogymnoascus spp. in the soil ecosystem, investigations into their molecular functions are still very limited. In the present study, proteomic characterization of six Pseudogymnoascus spp. isolated from three biogeographic regions (the Arctic, Antarctic, and temperate regions) was carried out using tandem mass spectrometry. Prior to proteomic analysis, the optimization for protein extraction was carried out. Trichloroacetic acid‑acetone‑phenol was found to be the best extraction method to be used for proteomic profiling of Pseudogymnoascus spp. The proteomic analysis identified 2003 proteins that were successfully mapped to the UniProtKB database. The identified proteins were clustered according to their biological processes and molecular functions. The shared proteins found in all Pseudogymnoascus spp. (1201 proteins) showed a significantly close relationship in their basic cellular functions, despite differences in morphological structures. Analysis of Pseudogymnoascus spp. proteome also identified proteins that were unique to each region. However, a high number of these proteins belonged to protein families of similar molecular functions, namely, transferases and hydrolases. Our proteomic data can be used as a reference for Pseudogymnoascus spp. across different global regions and a foundation for future soil ecosystem function research.

蛋白质组学已被广泛应用于真菌学领域,主要是试图了解与真菌分子功能有关的复杂的蛋白质相互作用网络。它也是比较属内代谢差异的有用工具。子囊菌门(Ascomycota)下的假姬松茸属(Pseudogymnoascus)物种已被证明在土壤环境中发挥着重要作用。它们在极地和温带地区都有发现,是许多有助于土壤分解的胞外水解酶的已知生产者。尽管假丝酵母菌属在土壤生态系统中具有明显的重要性,但对其分子功能的研究仍然非常有限。本研究利用串联质谱法对从三个生物地理区域(北极、南极和温带地区)分离出来的六种假丝酵母菌进行了蛋白质组学表征。在蛋白质组分析之前,对蛋白质提取进行了优化。发现三氯乙酸-丙酮-苯酚是用于假革兰属植物蛋白质组分析的最佳提取方法。 蛋白质组分析鉴定了 2003 个蛋白质,并成功地将其映射到 UniProtKB 数据库中。根据蛋白质的生物学过程和分子功能对已鉴定的蛋白质进行了分类。尽管形态结构存在差异,但所有假革囊菌属中发现的共有蛋白质(1201 个蛋白质)在基本细胞功能方面显示出明显的密切关系。对假丝虫蛋白组的分析还发现了每个区域独有的蛋白质。不过,这些蛋白质中有大量属于分子功能相似的蛋白质家族,即转移酶和水解酶。我们的蛋白质组数据可作为全球不同地区假丝酵母属的参考,并为未来的土壤生态系统功能研究奠定基础。
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引用次数: 0
A revised phylogeny of Boletaceae using whole genome sequences. 利用全基因组序列对牛肝菌科的系统发育进行了修订。
IF 2.8 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-01 Epub Date: 2024-03-29 DOI: 10.1080/00275514.2024.2314963
Keaton Tremble, Terry Henkel, Alexander Bradshaw, Colin Domnauer, Lyda M Brown, Lê Xuân Thám, Guliana Furci, M Catherine Aime, Jean-Marc Moncalvo, Bryn Dentinger

The porcini mushroom family Boletaceae is a diverse, widespread group of ectomycorrhizal (ECM) mushroom-forming fungi that so far has eluded intrafamilial phylogenetic resolution based on morphology and multilocus data sets. In this study, we present a genome-wide molecular data set of 1764 single-copy gene families from a global sampling of 418 Boletaceae specimens. The resulting phylogenetic analysis has strong statistical support for most branches of the tree, including the first statistically robust backbone. The enigmatic Phylloboletellus chloephorus from non-ECM Argentinian subtropical forests was recovered as a new subfamily sister to the core Boletaceae. Time-calibrated branch lengths estimate that the family first arose in the early to mid-Cretaceous and underwent a rapid radiation in the Eocene, possibly when the ECM nutritional mode arose with the emergence and diversification of ECM angiosperms. Biogeographic reconstructions reveal a complex history of vicariance and episodic long-distance dispersal correlated with historical geologic events, including Gondwanan origins and inferred vicariance associated with its disarticulation. Together, this study represents the most comprehensively sampled, data-rich molecular phylogeny of the Boletaceae to date, establishing a foundation for future robust inferences of biogeography in the group.

牛肝菌科(Boletaceae)牛肝菌属(the porcini mushroom family)是一个种类繁多、分布广泛的外生菌根(ECM)蘑菇真菌群,迄今为止,该真菌群一直未能根据形态学和多焦点数据集解决其族内系统发育问题。在本研究中,我们从全球 418 个牛肝菌科标本中提取了 1764 个单拷贝基因家族的全基因组分子数据集。由此得出的系统发育分析结果对树的大多数分支都有很强的统计支持,包括第一个统计上稳健的主干。来自阿根廷亚热带森林非欧洲共同体的神秘植物 Phylloboletellus chloephorus 被复原为一个新的亚科,是核心苧麻科的姊妹亚科。根据时间校准的分支长度估计,该科最早出现于白垩纪早期至中期,在始新世经历了快速辐射,可能是在 ECM 被子植物出现和多样化的同时,ECM 营养模式也随之出现。生物地理学重建揭示了与历史地质事件相关的复杂的沧海桑田和偶发性远距离扩散历史,包括贡瓦纳起源和与贡瓦纳分裂相关的推断沧海桑田。总之,这项研究代表了迄今为止取样最全面、数据最丰富的牛肝菌科分子系统发育,为今后有力地推断牛肝菌科的生物地理奠定了基础。
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引用次数: 0
Triple quadrupole liquid chromatography-mass spectrometry-mediated evaluation of vitamin D2 accumulation potential, antioxidant capacities, and total polyphenol content of white jelly mushroom (Tremella fuciformis Berk.). 三重四极杆液相色谱-质谱法评估白玉菇(Tremella fuciformis Berk.)
IF 2.6 2区 生物学 Q2 MYCOLOGY Pub Date : 2024-05-01 Epub Date: 2024-03-15 DOI: 10.1080/00275514.2024.2313435
Marium Begum, Ratul Saikia, Siddhartha Proteem Saikia

Tremella fuciformis Berk. (TF), or the white jelly mushroom, is well known for its myriad of pharmacological properties, such as immunomodulatory, anti-inflammatory, antidiabetic, antitumor, and antioxidant activities, and hypocholesterolemic and hepatoprotective effects that boost human health. Most of the studies of TF are concentrated on its polysaccharide (glucuronoxylomannan) composition, which is responsible for its pharmacological as well as rheological properties. It is well established that mushrooms are a great source of dietary vitamin D due to the presence of ergosterol in their cell membrane. There is a lack of published data on TF as a source of vitamin D2. Therefore, this study aimed to evaluate the vitamin D2 composition of the fruiting bodies of TF using triple quadrupole liquid chromatography-mass spectrometry (LC-MS/QQQ). The results showed highest vitamin D2 content (292.02 µg/g dry weight) in the sample irradiated with ultraviolet B (UVB; 310 nm) for 180 min as compared with the control group (52.47 µg/g dry weight) (P ≤ 0.001). The results showed higher accumulation potential of vitamin D2 in TF as compared with published data available for other extensively studied culinary mushrooms, such as Agaricus bisporus, Lentinula edodes, Pleurotus ostreatus, Cordiceps militaris, and Calocybe indica. Moreover, the impact of UV treatment on antioxidant capacities and total polyphenol content of TF was also studied. The accumulation potential of vitamin D in TF reveals a novel commercial source for this nutrient.

Tremella fuciformis Berk.(白玉菇(TF)因其多种药理特性而闻名,如免疫调节、抗炎、抗糖尿病、抗肿瘤和抗氧化活性,以及促进人类健康的降胆固醇和保肝作用。对 TF 的研究大多集中在其多糖(葡萄糖醛酸异甘露聚糖)成分上,这是其药理和流变特性的原因。由于蘑菇细胞膜中含有麦角甾醇,因此蘑菇是膳食维生素 D 的重要来源,这一点已得到公认。目前还缺乏有关 TF 作为维生素 D2 来源的公开数据。因此,本研究旨在使用三重四极杆液相色谱-质谱联用仪(LC-MS/QQQ)评估 TF 子实体中的维生素 D2 成分。结果显示,与对照组(52.47 µg/g(干重))相比,经紫外线 B(UVB;310 nm)照射 180 分钟的样品中维生素 D2 含量最高(292.02 µg/g(干重))(P ≤ 0.001)。结果表明,与其他被广泛研究的烹饪蘑菇(如双孢蘑菇、冬菇、牛肝菌、冬虫夏草和杏鲍菇)的公开数据相比,TF 中维生素 D2 的积累潜力更高。此外,还研究了紫外线处理对 TF 抗氧化能力和总多酚含量的影响。维生素 D 在 TF 中的积累潜力揭示了这一营养素的新型商业来源。
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引用次数: 0
Three new species of Agaricus from Baiyun Mountain, Guangzhou, China. 来自中国广州白云山的三个姬松茸新种。
IF 2.8 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-01 Epub Date: 2024-02-28 DOI: 10.1080/00275514.2024.2311039
Ying-Shan Liang, Xiao-Xia Huang, Zhi-Jun Lin, Dong-Lin He, Li-Hong Qiu

Agaricus is a species-rich genus with more than 600 species around the world. In this work, three new species, Agaricus cacainus, A. baiyunensis, and A. praeclarefibrillosus are described from the specimens collected at Baiyun Mountain, Guangzhou, China, a subtropical area with a monsoon maritime climate, based on phylogenetic analyses and morphological examinations of internal transcribed spacer (ITS1-5.8S-ITS2 = ITS), D1/D2 domains of the large subunit of ribosomal DNA (28S), and a part of translation elongation factor 1-alpha (TEF1). Agaricus cacainus in A. sect. Amoeni is characterized by a parabolic to applanate, slightly depressed pileus covered with chocolate brown, appressed, triangular squamules against white background, a white, furfuraceous stipe, an unchanging context when cut, a fragile and evanescent annulus, usually 4- or 2-spored basidia, and mostly pyriform cheilocystidia. Agaricus baiyunensis in A. sect. Minores has a pileus with a slightly truncate top covered with light brown, downy-wooly fibrillose scales and a light yellowish stipe with membranous annulus. Agaricus praeclarefibrillosus in A. sect. Brunneopicti is characterized by a pileus surface with brownish, triangular, recurved scales and longitudinally splitting lines toward margin, a cottony stipe with white, tiny, recurved fibrils, a single annulus, and variously shaped cheilocystidia, with sparsely ornamented basidiospores. The detailed comparison of their morphological characteristics with closely related species is provided.

姬松茸属物种丰富,在全世界有 600 多个物种。本研究根据系统发育分析和内部转录间隔(ITS1-5.8S-ITS2 = ITS)、核糖体 DNA 大亚基(28S)的 D1/D2 结构域和翻译延伸因子 1-α(TEF1)的一部分。A. sect.Amoeni的特征是:绒毛呈抛物线状或扁平状,略微下凹,覆盖着巧克力棕色的三角形贴伏鳞片,白色背景,白色糠状柄,切割时纹理不变,环膜脆弱且易变,基部通常有4个或2个孢子囊,螯囊大多呈梨形。Agaricus baiyunensis in A. sect.Minores 中的白云姬松茸(A. sect.A. sect.Brunneopicti 中的 Agaricus praeclarefibrillosus 的特征是:绒毛表面有带褐色、三角形、下弯的鳞片和向边缘纵向分裂的纹路,棉状的柄上有白色、细小、下弯的纤维,单个环状体和形状各异的螯囊,基部有稀疏的装饰孢子。详细比较了它们与近缘种的形态特征。
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引用次数: 0
Correction. 更正。
IF 2.8 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-01 Epub Date: 2024-04-29 DOI: 10.1080/00275514.2024.2342752
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引用次数: 0
Martha Jane Powell, 27 January 1948–20 June 2023: Distinguished chytrid taxonomist and mentor 玛莎-简-鲍威尔(Martha Jane Powell),1948 年 1 月 27 日-2023 年 6 月 20 日:杰出的糜烂病分类学家和导师
IF 2.8 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-16 DOI: 10.1080/00275514.2024.2335863
William J. Davis
Published in Mycologia (Ahead of Print, 2024)
发表于《真菌学》(2024 年提前出版)
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引用次数: 0
Agaricus subgenus Pseudochitonia in Malakand, Pakistan: An updated phylogeny and description of three new species 巴基斯坦马拉坎德的姬松茸亚属:更新的系统发育和三个新物种的描述
IF 2.8 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-15 DOI: 10.1080/00275514.2024.2334473
Rab Nawaz, Waheed Murad, Muhammad Irshad, Philippe Callac, Shah Hussain
Agaricus is a genus with more than 500 species. Most of the new species reported since 2000 are tropical or subtropical. The study area, the Malakand region, located in the north of Pakistan, has a...
姬松茸属有 500 多个物种。自 2000 年以来报告的新物种大多属于热带或亚热带。研究地区是位于巴基斯坦北部的马拉坎德地区。
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引用次数: 0
Evolutionary dependence of host type and chasmothecial appendage morphology in obligate plant parasites belonging to Erysipheae (powdery mildew, Erysiphaceae) 属于白粉菌科(Erysiphaceae)的强制性植物寄生虫的寄主类型和鞘膜附属物形态的进化依赖性
IF 2.8 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-12 DOI: 10.1080/00275514.2024.2327972
Takashi Shirouzu, Takao K. Suzuki, Shunsuke Matsuoka, Susumu Takamatsu
Evolutionary relationships between the morphological and ecological traits of fungi are poorly understood. The appendages of chasmothecia, which are sexual reproductive organs of Erysiphaceae, are ...
人们对真菌形态特征与生态特征之间的进化关系知之甚少。作为酢浆草科植物有性生殖器官的茎叶附属物 ...
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引用次数: 0
Factors affecting composition of fatty acids in wild-growing forest mushrooms 影响野生林菇脂肪酸组成的因素
IF 2.8 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-04 DOI: 10.1080/00275514.2024.2325045
Katarzyna Stojek, Barbara Bobrowska-Korczak, Barbara Kusińska, Małgorzata Czerwonka, Julien Decruyenaere, Lucas Decock, Johanna Klama, Sandra Mueller, Quentin Ponette, Michael Scherer-Lorenzen, Kris Verheyen, Bogdan Jaroszewicz
The importance of mushrooms as a food source is continually increasing. To investigate how environmental factors affect the nutritional value of mushrooms, we harvested them in eastern Poland, sout...
蘑菇作为食物来源的重要性与日俱增。为了研究环境因素如何影响蘑菇的营养价值,我们在波兰东部、南部和北部采收了蘑菇。
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引用次数: 0
Purification of andibenin and a chromanone analogue from rhizospheric Aspergillus flavus and soil-borne Penicillium notatum exhibiting cytotoxic and antibacterial properties 从根瘤黄曲霉和土生青霉中纯化出具有细胞毒性和抗菌特性的安替比林和一种色烷酮类似物
IF 2.8 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-04 DOI: 10.1080/00275514.2024.2324620
Saeed Ullah Khattak, Zafar Iqbal, Jamshaid Ahmad, Yanbin Shi, Irshad Ur Rehman
The discovery of bioactive compounds from fungal natural sources holds immense potential for the development of novel therapeutics. The present study investigates the extracts of soil-borne Penicil...
从真菌天然来源中发现生物活性化合物对于开发新型疗法具有巨大的潜力。本研究对土壤中的青霉提取物进行了研究。
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引用次数: 0
期刊
Mycologia
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