Pub Date : 2024-09-01Epub Date: 2024-07-02DOI: 10.1080/00275514.2024.2363137
B van der Merwe, A Rockefeller, A Kilian, C Clark, M Sethathi, T Moult, K Jacobs
Two new Psilocybe species (Hymenogastraceae), P. ingeli and P. maluti, are described from southern Africa. Morphology and phylogeny were used to separate the two novel fungi from their closest relatives in the genus. Psilocybe ingeli was found fruiting on bovine manure-enriched grasslands in the Kwa-Zulu Natal Province of South Africa and differs from its closest relative P. keralensis and others in the internal transcribed spacer ITS1-5.8S-ITS2, partial 28S nuc rDNA, and translation elongation factor 1-alpha regions, distribution, and having larger basidiospores. Similarly, P. maluti was collected from the Free State Province of South Africa and observed in the Kingdom of Lesotho, growing on bovine manure. A secotioid pileus, geographic distribution, and differences in the same DNA regions distinguish P. maluti from its closest relative P. chuxiongensis. Furthermore, the spore dispersal and traditional, spiritualistic use of P. maluti are discussed here.
本文描述了来自非洲南部的两个 Psilocybe 新种(Hymenogastraceae):P. ingeli 和 P. maluti。利用形态学和系统发生学将这两种新真菌与其属中的近亲区分开来。Psilocybe ingeli 在南非夸祖鲁-纳塔尔省富含牛粪的草地上被发现结果,在内部转录间隔区 ITS1-5.8S-ITS2、部分 28S nuc rDNA 和翻译延伸因子 1-α 区域、分布以及较大的基生孢子方面与近亲 P. keralensis 和其他真菌不同。同样,从南非自由州省采集到的 P. maluti 在莱索托王国也被观察到,它生长在牛粪上。Maluti 的栉状绒毛、地理分布以及相同 DNA 区域的差异将其与近亲 P. chuxiongensis 区分开来。此外,本文还讨论了 P. maluti 的孢子传播和传统灵用。
{"title":"A description of two novel <i>Psilocybe</i> species from southern Africa and some notes on African traditional hallucinogenic mushroom use.","authors":"B van der Merwe, A Rockefeller, A Kilian, C Clark, M Sethathi, T Moult, K Jacobs","doi":"10.1080/00275514.2024.2363137","DOIUrl":"10.1080/00275514.2024.2363137","url":null,"abstract":"<p><p>Two new <i>Psilocybe</i> species (Hymenogastraceae), <i>P. ingeli</i> and <i>P. maluti</i>, are described from southern Africa. Morphology and phylogeny were used to separate the two novel fungi from their closest relatives in the genus. <i>Psilocybe ingeli</i> was found fruiting on bovine manure-enriched grasslands in the Kwa-Zulu Natal Province of South Africa and differs from its closest relative <i>P. keralensis</i> and others in the internal transcribed spacer ITS1-5.8S-ITS2, partial 28S nuc rDNA, and translation elongation factor 1-alpha regions, distribution, and having larger basidiospores. Similarly, <i>P. maluti</i> was collected from the Free State Province of South Africa and observed in the Kingdom of Lesotho, growing on bovine manure. A secotioid pileus, geographic distribution, and differences in the same DNA regions distinguish <i>P. maluti</i> from its closest relative <i>P. chuxiongensis</i>. Furthermore, the spore dispersal and traditional, spiritualistic use of <i>P. maluti</i> are discussed here.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"821-834"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141492642","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-08-09DOI: 10.1080/00275514.2024.2363141
Cristiano Coelho-Nascimento, Denis A Zabin, Alexandre G Dos Santos E Silva-Filho, Mariana P Drewinski, Genivaldo Alves-Silva, Thiago Kossmann, Mahatma Titton, Elisandro R Drechsler-Santos, Nelson Menolli
Pseudohydnum, commonly known as cat's tongue mushrooms, is a monophyletic assemblage within Auriculariales, which encompasses species with gelatinous basidiomata, spathulate, flabellate, or shell-shaped pileus, hydnoid hymenophore, globose to ellipsoidal basidiospores, and longitudinally cruciate-septate basidia. According to the available literature, 16 species have been described in Pseudohydnum, mostly represented in temperate-boreal forests of the Northern Hemisphere. However, the limited morphological, molecular, and ecological information, especially from the Southern Hemisphere ecosystems, does not presently allow a reliable assessment of its taxonomic boundaries nor provide a complete picture of the species diversity in the genus. In an ongoing effort to examine specimens collected in dense and mixed ombrophilous forest fragments (Atlantic Rainforest domain) from Southeastern and Southern Brazil, additional taxa assigned to Pseudohydnum were identified. Four new species are recognized based mostly on characters of the pileus surface, stipe, hymenium, and basidiospores. Molecular phylogenetic analyses based on nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS barcode), partial nuc rDNA 28S, and partial RNA polymerase II largest subunit (RPB1) sequences supported the description of these new taxa. Here, we propose Pseudohydnum brasiliense, P. brunneovelutinum, P. cupulisnymphae, and P. viridimontanum as new species. Morphological descriptions, line drawings, habitat photos, and comparisons with closely related taxa are provided. A dichotomous key for identification of currently known Southern Hemisphere Pseudohydnum species is presented.
{"title":"Unroughing the cat's tongue mushrooms: Four new species of <i>Pseudohydnum</i> from Brazil based on morphological and molecular phylogenetic evidence.","authors":"Cristiano Coelho-Nascimento, Denis A Zabin, Alexandre G Dos Santos E Silva-Filho, Mariana P Drewinski, Genivaldo Alves-Silva, Thiago Kossmann, Mahatma Titton, Elisandro R Drechsler-Santos, Nelson Menolli","doi":"10.1080/00275514.2024.2363141","DOIUrl":"10.1080/00275514.2024.2363141","url":null,"abstract":"<p><p><i>Pseudohydnum</i>, commonly known as cat's tongue mushrooms, is a monophyletic assemblage within Auriculariales, which encompasses species with gelatinous basidiomata, spathulate, flabellate, or shell-shaped pileus, hydnoid hymenophore, globose to ellipsoidal basidiospores, and longitudinally cruciate-septate basidia. According to the available literature, 16 species have been described in <i>Pseudohydnum</i>, mostly represented in temperate-boreal forests of the Northern Hemisphere. However, the limited morphological, molecular, and ecological information, especially from the Southern Hemisphere ecosystems, does not presently allow a reliable assessment of its taxonomic boundaries nor provide a complete picture of the species diversity in the genus. In an ongoing effort to examine specimens collected in dense and mixed ombrophilous forest fragments (Atlantic Rainforest domain) from Southeastern and Southern Brazil, additional taxa assigned to <i>Pseudohydnum</i> were identified. Four new species are recognized based mostly on characters of the pileus surface, stipe, hymenium, and basidiospores. Molecular phylogenetic analyses based on nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS barcode), partial nuc rDNA 28S, and partial RNA polymerase II largest subunit (<i>RPB1</i>) sequences supported the description of these new taxa. Here, we propose <i>Pseudohydnum brasiliense, P. brunneovelutinum, P. cupulisnymphae</i>, and <i>P. viridimontanum</i> as new species. Morphological descriptions, line drawings, habitat photos, and comparisons with closely related taxa are provided. A dichotomous key for identification of currently known Southern Hemisphere <i>Pseudohydnum</i> species is presented.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"792-820"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141910022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-08DOI: 10.1080/00275514.2024.2361518
Carolina G Piña Páez, Kyle A Gervers, Jessica A Martin, Javier F Tabima, Daniel L Luoma, Joseph W Spatafora
Suillus (order Boletales) is a diverse genus of epigeous, mushroom-forming fungi native to temperate forests across the Northern Hemisphere; however, some species are also present in areas where Pinaceae has been introduced in the Southern Hemisphere. Unlike the closely related genus Rhizopogon, there are no described hypogeous, sequestrate species of Suillus. Here, we describe Suillus hypogaeus, the first known species of the genus with hypogeous, sequestrate sporocarps. Collections were made on Marys Peak in Benton County, Oregon, USA, at an elevation of 800 m in forests dominated by Pseudotsuga menziesii var. menziesii. The peridium is white, quickly staining pink to purple-reddish where bruised or cut. The gleba is pale yellow when young, becoming purple with maturity, and the basidiospores are obovoid, light yellow in KOH, and amyloid in Melzer's reagent. Multilocus molecular phylogenetic analyses support the placement of S. hypogaeus among the Larix specialists in the spectabilis group of Suillus. Although Larix and Pseudotsuga are sister genera, Larix does not occur on Marys Peak or elsewhere in western Oregon. Suillus hypogaeus, therefore, represents both an independent origin of the hypogeous, sequestrate sporocarp within the Boletales and an independent host shift between Larix and Pseudotsuga within the genus Suillus.
{"title":"<i>Suillus hypogaeus</i>: First record of a truffle <i>Suillus</i>.","authors":"Carolina G Piña Páez, Kyle A Gervers, Jessica A Martin, Javier F Tabima, Daniel L Luoma, Joseph W Spatafora","doi":"10.1080/00275514.2024.2361518","DOIUrl":"10.1080/00275514.2024.2361518","url":null,"abstract":"<p><p><i>Suillus</i> (order Boletales) is a diverse genus of epigeous, mushroom-forming fungi native to temperate forests across the Northern Hemisphere; however, some species are also present in areas where Pinaceae has been introduced in the Southern Hemisphere. Unlike the closely related genus <i>Rhizopogon</i>, there are no described hypogeous, sequestrate species of <i>Suillus</i>. Here, we describe <i>Suillus hypogaeus</i>, the first known species of the genus with hypogeous, sequestrate sporocarps. Collections were made on Marys Peak in Benton County, Oregon, USA, at an elevation of 800 m in forests dominated by <i>Pseudotsuga menziesii</i> var. <i>menziesii</i>. The peridium is white, quickly staining pink to purple-reddish where bruised or cut. The gleba is pale yellow when young, becoming purple with maturity, and the basidiospores are obovoid, light yellow in KOH, and amyloid in Melzer's reagent. Multilocus molecular phylogenetic analyses support the placement of <i>S. hypogaeus</i> among the <i>Larix</i> specialists in the spectabilis group of <i>Suillus</i>. Although <i>Larix</i> and <i>Pseudotsuga</i> are sister genera, <i>Larix</i> does not occur on Marys Peak or elsewhere in western Oregon. <i>Suillus hypogaeus</i>, therefore, represents both an independent origin of the hypogeous, sequestrate sporocarp within the Boletales and an independent host shift between <i>Larix</i> and <i>Pseudotsuga</i> within the genus <i>Suillus</i>.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"764-774"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141559180","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-08DOI: 10.1080/00275514.2024.2358942
Salna Nanu, T K Arun Kumar
Two new species, Chalciporus rubrostipitatus and Tylopilus purpureus, are proposed from India based on morphological and molecular data. Chalciporus rubrostipitatus is characterized by basidiomata having purplish red to reddish pileus with subtomentose to rugose surface, whitish pileal context, round to angular pores, and reddish orange to red stipe, which is pruinose toward the apex. Tylopilus purpureus produces basidiomata having a purple to vinaceous purple pileus, whitish pore surface that changes to reddish brown on bruising, and a minutely pubescent purplish stipe. Morphological descriptions and comparisons, taxonomic keys, and results of phylogenetic analyses using sequences of the ITS (internal transcribed spacer), 28S (28S rRNA), and RPB2 (second largest subunit of RNA polymerase II) gene regions are presented.
{"title":"New species of <i>Chalciporus</i> and <i>Tylopilus</i> from India, with keys to the known species.","authors":"Salna Nanu, T K Arun Kumar","doi":"10.1080/00275514.2024.2358942","DOIUrl":"10.1080/00275514.2024.2358942","url":null,"abstract":"<p><p>Two new species, <i>Chalciporus rubrostipitatus</i> and <i>Tylopilus purpureus</i>, are proposed from India based on morphological and molecular data. <i>Chalciporus rubrostipitatus</i> is characterized by basidiomata having purplish red to reddish pileus with subtomentose to rugose surface, whitish pileal context, round to angular pores, and reddish orange to red stipe, which is pruinose toward the apex. <i>Tylopilus purpureus</i> produces basidiomata having a purple to vinaceous purple pileus, whitish pore surface that changes to reddish brown on bruising, and a minutely pubescent purplish stipe. Morphological descriptions and comparisons, taxonomic keys, and results of phylogenetic analyses using sequences of the ITS (internal transcribed spacer), 28S (28S rRNA), and <i>RPB2</i> (second largest subunit of RNA polymerase II) gene regions are presented.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"729-743"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141559182","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-03DOI: 10.1080/00275514.2024.2363084
Jing Luo, Emily Walsh, Alexis Faulborn, Kevin Gao, James White, Ning Zhang
Pinibarrenia chlamydospora, sp. nov. isolated from the roots of highbush blueberry in the New Jersey Pine Barrens, is described and illustrated. Based on multigene phylogenetic analysis, as well as morphological and ecological characteristics, Pinibarreniales and Pinibarreniaceae are established to accommodate this novel lineage in Sordariomycetidae, Sordariomycetes. Pinibarreniales, Tracyllalales, and Vermiculariopsiellales are proposed to be included in the subclass Sordariomycetidae. Pinibarreniales likely have a wide distribution and forms association with Ericaceae plants that live in acidic and oligotrophic environments because its DNA barcode matches with environmental sequences from other independent ecological studies. The plant-fungal interaction experiment revealed negative impacts on Arabidopsis, indicating its pathogenicity. This uncovered new fungal lineage will contribute to a better understanding of the diversity and systematics of Sordariomycetes.
{"title":"Pinibarreniales, a new order of Sordariomycetes from pine barrens ecosystem.","authors":"Jing Luo, Emily Walsh, Alexis Faulborn, Kevin Gao, James White, Ning Zhang","doi":"10.1080/00275514.2024.2363084","DOIUrl":"10.1080/00275514.2024.2363084","url":null,"abstract":"<p><p><i>Pinibarrenia chlamydospora</i>, sp. nov. isolated from the roots of highbush blueberry in the New Jersey Pine Barrens, is described and illustrated. Based on multigene phylogenetic analysis, as well as morphological and ecological characteristics, Pinibarreniales and Pinibarreniaceae are established to accommodate this novel lineage in Sordariomycetidae, Sordariomycetes. Pinibarreniales, Tracyllalales, and Vermiculariopsiellales are proposed to be included in the subclass Sordariomycetidae. Pinibarreniales likely have a wide distribution and forms association with Ericaceae plants that live in acidic and oligotrophic environments because its DNA barcode matches with environmental sequences from other independent ecological studies. The plant-fungal interaction experiment revealed negative impacts on <i>Arabidopsis</i>, indicating its pathogenicity. This uncovered new fungal lineage will contribute to a better understanding of the diversity and systematics of Sordariomycetes.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"835-847"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141498449","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-18DOI: 10.1080/00275514.2024.2363730
Samah H H Ismail, Rania Hamdy, Alaa M Altaie, Bahgat Fayed, Salam Dakalbab, Raafat El-Awady, Sameh S M Soliman
Candida auris is an emerging drug-resistant pathogen associated with high mortality rates. This study aimed to explore the metabolic alterations and associated pathogenesis and drug resistance in fluconazole-treated Candida auris-host cell interaction. Compared with controls, secreted metabolites from fluconazole-treated C. auris and fluconazole-treated C. auris-host cell co-culture demonstrated notable anti-Candida activity. Fluconazole caused significant reductions in C. auris cell numbers and aggregated phenotype. Metabolites produced by C. auris with potential fungal colonization, invasion, and host immune evasion effects were identified. Metabolites known to enhance biofilm formation produced during C. auris-host cell interaction were inhibited by fluconazole. Fluconazole enhanced the production of metabolites with biofilm inhibition activity, including behenyl alcohol and decanoic acid. Metabolites with potential Candida growth inhibition activity such as 2-palmitoyl glycerol, 1-tetradecanol, and 1-nonadecene were activated by fluconazole. Different patterns of proinflammatory cytokine expression presented due to fluconazole concentration and host cell type (fibroblasts versus macrophages). This highlights the immune response's complexity, emphasizing the necessity for additional research to comprehend cell-type-specific responses to antifungal therapies. Both host cell interaction and fluconazole treatment increased the expression of CDR1 and ERG11 genes, both associated with drug resistance. This study provides insights into pathogenesis in C. auris due to host cell interaction and fluconazole treatment. Understanding these interactions is crucial for enhancing fluconazole sensitivity and effectively combating C. auris.
白色念珠菌是一种新出现的耐药病原体,死亡率很高。本研究旨在探讨经氟康唑处理的白色念珠菌与宿主细胞相互作用过程中的代谢改变以及相关的致病机制和耐药性。与对照组相比,经氟康唑处理的白色念珠菌和经氟康唑处理的白色念珠菌-宿主细胞共培养物分泌的代谢物具有显著的抗白色念珠菌活性。氟康唑能显著减少念珠菌细胞数量和聚集表型。确定了 C. auris 产生的具有潜在真菌定殖、入侵和宿主免疫逃避作用的代谢物。氟康唑可抑制箭毒-宿主细胞相互作用过程中产生的、已知可促进生物膜形成的代谢物。氟康唑增强了具有生物膜抑制活性的代谢物的生成,包括山嵛醇和癸酸。氟康唑激活了具有潜在念珠菌生长抑制活性的代谢物,如 2-棕榈酰甘油、1-十四醇和 1-壬二烯。由于氟康唑浓度和宿主细胞类型(成纤维细胞和巨噬细胞)的不同,促炎细胞因子的表达模式也不同。这凸显了免疫反应的复杂性,强调有必要开展更多研究,以了解细胞类型对抗真菌疗法的特异性反应。宿主细胞相互作用和氟康唑治疗都增加了 CDR1 和 ERG11 基因的表达,而这两种基因都与耐药性有关。这项研究深入揭示了宿主细胞相互作用和氟康唑治疗导致的蛔虫致病机理。了解这些相互作用对于提高氟康唑的敏感性和有效防治蛔虫至关重要。
{"title":"Decoding host cell interaction- and fluconazole-induced metabolic alterations and drug resistance in <i>Candida auris</i>.","authors":"Samah H H Ismail, Rania Hamdy, Alaa M Altaie, Bahgat Fayed, Salam Dakalbab, Raafat El-Awady, Sameh S M Soliman","doi":"10.1080/00275514.2024.2363730","DOIUrl":"10.1080/00275514.2024.2363730","url":null,"abstract":"<p><p><i>Candida auris</i> is an emerging drug-resistant pathogen associated with high mortality rates. This study aimed to explore the metabolic alterations and associated pathogenesis and drug resistance in fluconazole-treated <i>Candida auris</i>-host cell interaction. Compared with controls, secreted metabolites from fluconazole-treated <i>C. auris</i> and fluconazole-treated <i>C. auris</i>-host cell co-culture demonstrated notable anti-<i>Candida</i> activity. Fluconazole caused significant reductions in <i>C. auris</i> cell numbers and aggregated phenotype. Metabolites produced by <i>C. auris</i> with potential fungal colonization, invasion, and host immune evasion effects were identified. Metabolites known to enhance biofilm formation produced during <i>C. auris</i>-host cell interaction were inhibited by fluconazole. Fluconazole enhanced the production of metabolites with biofilm inhibition activity, including behenyl alcohol and decanoic acid. Metabolites with potential <i>Candida</i> growth inhibition activity such as 2-palmitoyl glycerol, 1-tetradecanol, and 1-nonadecene were activated by fluconazole. Different patterns of proinflammatory cytokine expression presented due to fluconazole concentration and host cell type (fibroblasts versus macrophages). This highlights the immune response's complexity, emphasizing the necessity for additional research to comprehend cell-type-specific responses to antifungal therapies. Both host cell interaction and fluconazole treatment increased the expression of <i>CDR1</i> and <i>ERG11</i> genes, both associated with drug resistance. This study provides insights into pathogenesis in <i>C. auris</i> due to host cell interaction and fluconazole treatment. Understanding these interactions is crucial for enhancing fluconazole sensitivity and effectively combating <i>C. auris</i>.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"673-693"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141723953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-18DOI: 10.1080/00275514.2024.2363152
Philipp B Gannibal, Maria M Gomzhina
Alternaria is a large genus within Pleosporaceae and consists of fungi that have up to recently been considered to be 15 separate genera, including Ulocladium. The majority of Ulocladium species after incorporation into Alternaria were placed in three sections: Ulocladioides, Pseudoulocladium, and Ulocladium. In this study, phylogeny of 26 reference strains of 22 species and 20 Russian Ulocladium-like isolates was recovered. The partial actin gene (act), Alternaria major allergen (alta1), calmodulin (cal), glyceraldehyde-3-phosphate dehydrogenase (gapdh), RNA polymerase II second largest subunit (rpb2), and translation elongation factor 1-α (tef1) were sequenced for Russian isolates. All these fungi were examined using multilocus phylogenetic analysis according to the genealogical concordance phylogenetic species recognition (GCPSR) principle and the coalescent-based model Poisson tree processes (PTP, mPTP) and evaluated for the presence of recombination. All strains were combined into two clades that corresponded to the Pseudoulocladium and Ulocladioides sections. The Pseudoulocladium clade included four reference strains and nine local isolates and considered to be a single species, whereas the Ulocladioides section comprises 11 species, instead of 17 names previously adopted. Nine species were abolished by joining four other species. Species A. atra and A. multiformis were combined into the single species A. atra. Five species, A. brassicae-pekinensis, A. consortialis, A. cucurbitae, A. obovoidea, and A. terricola, were united in the species A. consortialis. Alternaria heterospora and A. subcucurbitae were combined into one species, A. subcucurbitae. Alternaria aspera, A. chartarum, A. concatenata, and A. septospora were combined into a single species, A. chartarum. Also, amplification with two different primer sets was performed to define mating-type locus 1 (MAT1) idiomorph. All studied isolates were heterothallic, contradicting some prior studies. Twenty Russian Ulocladium-like isolates were assigned to five species of two sections, A. atra, A. cantlous, A. chartarum, A. consortialis, and A. subcucurbitae. Species A. cantlous and A. subcucurbitae were found in Russia for the first time.
Alternaria 是 Pleosporaceae 中的一个大属,由真菌组成,直到最近还被认为是 15 个独立的属,其中包括 Ulocladium。在并入 Alternaria 后,大多数 Ulocladium 种类被分为三个部分:Ulocladioides、Pseudoulocladium 和 Ulocladium。本研究对 22 个物种的 26 个参考菌株和 20 个俄罗斯类 Ulocladium 分离物进行了系统发育。对俄罗斯分离菌株的部分肌动蛋白基因(act)、Alternaria 主要过敏原(alta1)、钙调蛋白(cal)、甘油醛-3-磷酸脱氢酶(gapdh)、RNA 聚合酶 II 第二大亚基(rpb2)和翻译延伸因子 1-α (tef1)进行了测序。根据系谱一致系统发育物种识别(GCPSR)原则和基于聚合模型的泊松树过程(PTP,mPTP),使用多焦点系统发育分析对所有这些真菌进行了检验,并评估了重组的存在。所有菌株被合并为两个支系,分别对应于 Pseudoulocladium 和 Ulocladioides 两个部分。Pseudoulocladium 支系包括 4 个参考菌株和 9 个本地分离株,被认为是一个物种,而 Ulocladioides 支系包括 11 个物种,而不是之前采用的 17 个名称。通过加入其他 4 个种,取消了 9 个种。A. atra 和 A. multiformis 合并为单一种 A. atra。5 个种,即 A. brassicae-pekinensis、A. consortialis、A. cucurbitae、A. obovoidea 和 A. terricola,合并为 A. consortialis 种。Alternaria heterospora 和 A. subcucurbitae 合为一个种,即 A. subcucurbitae。Alternaria aspera、A. chartarum、A. concatenata 和 A. septospora 合为一个种,即 A. chartarum。此外,还使用两种不同的引物组进行了扩增,以确定交配型基因座 1(MAT1)的异形。所有研究的分离株都是异雄的,这与之前的一些研究相矛盾。20 个俄罗斯 Ulocladium 样分离株被归入两个部分的 5 个种:A. atra、A. cantlous、A. chartarum、A. consortialis 和 A. subcucurbitae。A. cantlous 和 A. subcucurbitae 是首次在俄罗斯发现。
{"title":"Revision of <i>Alternaria</i> sections <i>Pseudoulocladium</i> and <i>Ulocladioides</i>: Assessment of species boundaries, determination of mating-type loci, and identification of Russian strains.","authors":"Philipp B Gannibal, Maria M Gomzhina","doi":"10.1080/00275514.2024.2363152","DOIUrl":"10.1080/00275514.2024.2363152","url":null,"abstract":"<p><p><i>Alternaria</i> is a large genus within Pleosporaceae and consists of fungi that have up to recently been considered to be 15 separate genera, including <i>Ulocladium</i>. The majority of <i>Ulocladium</i> species after incorporation into <i>Alternaria</i> were placed in three sections: <i>Ulocladioides, Pseudoulocladium</i>, and <i>Ulocladium</i>. In this study, phylogeny of 26 reference strains of 22 species and 20 Russian <i>Ulocladium</i>-like isolates was recovered. The partial actin gene (<i>act</i>), <i>Alternaria</i> major allergen (<i>alta1</i>), calmodulin (<i>cal</i>), glyceraldehyde-3-phosphate dehydrogenase (<i>gapdh</i>), RNA polymerase II second largest subunit (<i>rpb2</i>), and translation elongation factor 1-α (<i>tef1</i>) were sequenced for Russian isolates. All these fungi were examined using multilocus phylogenetic analysis according to the genealogical concordance phylogenetic species recognition (GCPSR) principle and the coalescent-based model Poisson tree processes (PTP, mPTP) and evaluated for the presence of recombination. All strains were combined into two clades that corresponded to the <i>Pseudoulocladium</i> and <i>Ulocladioides</i> sections. The <i>Pseudoulocladium</i> clade included four reference strains and nine local isolates and considered to be a single species, whereas the <i>Ulocladioides</i> section comprises 11 species, instead of 17 names previously adopted. Nine species were abolished by joining four other species. Species <i>A. atra</i> and <i>A. multiformis</i> were combined into the single species <i>A. atra</i>. Five species, <i>A. brassicae-pekinensis, A. consortialis, A. cucurbitae, A. obovoidea</i>, and <i>A. terricola</i>, were united in the species <i>A. consortialis. Alternaria heterospora</i> and <i>A. subcucurbitae</i> were combined into one species, <i>A. subcucurbitae. Alternaria aspera, A. chartarum, A. concatenata</i>, and <i>A. septospora</i> were combined into a single species, <i>A. chartarum</i>. Also, amplification with two different primer sets was performed to define mating-type locus 1 (<i>MAT1</i>) idiomorph. All studied isolates were heterothallic, contradicting some prior studies. Twenty Russian <i>Ulocladium</i>-like isolates were assigned to five species of two sections, <i>A. atra, A. cantlous, A. chartarum, A. consortialis</i>, and <i>A. subcucurbitae</i>. Species <i>A. cantlous</i> and <i>A. subcucurbitae</i> were found in Russia for the first time.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"744-763"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141723955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-06-21DOI: 10.1080/00275514.2024.2357968
Nicolas Feau, Joey B Tanney, Padmini Herath, Stefan Zeglen, Richard C Hamelin
Ophiostoma haidanensis is described as a new species of the Ophiostoma piceae complex isolated from yellow-cedar (Callitropsis nootkatensis (D. Don) Oerst. ex D.P. Little) sapwood in the Haida Gwaii island archipelago and the North Coast of British Columbia, Canada. The fungus is characterized by the production of a typical sporothrix-like asexual morph but is distinguished morphologically from other members of the O. piceae species complex by its large, multiseptate primary conidia. Phylogenetic analysis of DNA sequences from the nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS) and the β-tubulin (BTUB) and translation elongation factor 1-α (TEF1) genes supports the inclusion of O. haidensis as a distinct member within the O. piceae complex. To our knowledge, this is the first report of a blue stain fungus infecting yellow-cedar, an ecologically, culturally, and economically important conifer naturally distributed along the coastal forests of the Pacific Northwest in North America.
Ophiostoma haidanensis 被描述为一种从加拿大海达瓜伊群岛和不列颠哥伦比亚省北海岸的黄柏(Callitropsis nootkatensis (D. Don) Oerst.该真菌的特征是产生典型的孢子囊状无性形态,但从形态上看,它与 O. piceae 物种群的其他成员不同,它的初级分生孢子大而多隔膜。通过对 nuc rDNA 内部转录间隔区 ITS1-5.8S-ITS2(ITS)、β-微管蛋白(BTUB)和翻译伸长因子 1-α(TEF1)基因的 DNA 序列进行系统发育分析,支持将海金森褐藻属(O. haidensis)作为一个独特的成员纳入五加科褐藻属(O. piceae)复合体。据我们所知,这是第一份关于蓝染真菌感染黄柏的报告,黄柏是一种在生态、文化和经济上都很重要的针叶树,自然分布在北美西北太平洋沿岸森林中。
{"title":"<i>Ophiostoma haidaense</i>, sp. nov., a new member of the <i>O. piceae</i> species complex associated with yellow-cedar, <i>Callitropsis nootkatensis</i>.","authors":"Nicolas Feau, Joey B Tanney, Padmini Herath, Stefan Zeglen, Richard C Hamelin","doi":"10.1080/00275514.2024.2357968","DOIUrl":"10.1080/00275514.2024.2357968","url":null,"abstract":"<p><p><i>Ophiostoma haidanensis</i> is described as a new species of the <i>Ophiostoma piceae</i> complex isolated from yellow-cedar (<i>Callitropsis nootkatensis</i> (D. Don) Oerst. ex D.P. Little) sapwood in the Haida Gwaii island archipelago and the North Coast of British Columbia, Canada. The fungus is characterized by the production of a typical sporothrix-like asexual morph but is distinguished morphologically from other members of the <i>O. piceae</i> species complex by its large, multiseptate primary conidia. Phylogenetic analysis of DNA sequences from the nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS) and the β-tubulin (<i>BTUB</i>) and translation elongation factor 1-α (<i>TEF1</i>) genes supports the inclusion of <i>O. haidensis</i> as a distinct member within the <i>O. piceae</i> complex. To our knowledge, this is the first report of a blue stain fungus infecting yellow-cedar, an ecologically, culturally, and economically important conifer naturally distributed along the coastal forests of the Pacific Northwest in North America.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"694-707"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141437246","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-06-24DOI: 10.1080/00275514.2024.2355276
Christian A Quintero-Corrales, Melania Vega, Amaranta Ramírez-Terrazo, Bernardo Águila, Roberto Garibay-Orijel
Amanita is one of the most salient mushroom genera due to its cultural, economic, and medical importance. Recently, many new Amanita species have been described worldwide, increasing the genus richness. However, several clades have cryptic diversity, and many species complexes have not yet been resolved. This is the case of the rubescent species in the Validae section, which have been widely cited under the name Amanita rubescens s.l. We used a four-locus matrix (nuc rDNA internal transcribed spacer [ITS] and 28S regions and genes for RNA polymerase II subunit 2 [rpb2], translation elongation factor 1-α [tef1-α], and β-tubulin [tub2]) to solve the phylogenetic relationships within the Amanita section Validae. To analyze the diversity and distribution patterns of species, we used an extensive ITS sequence sampling including environmental DNA databases. The phylogenetic analyses demonstrated that the Validae section is divided into three monophyletic and highly supported major clades: Mappae, Validae, and Rubescentes. At least 11 species-level clades within the Rubescentes clade were highly supported: A. cruentilemurum nom. prov. A. brunneolocularis, A. rubescens s.s. (European clade), A. rubescens s.s. (Asiatic clade), A. orsonii s.s. A. 'orsonii,' A. aureosubucula nom. prov., A. novinupta, A. flavorubens, and two undescribed North American species. We proved that A. rubescens s.s. has two segregated populations (European and Asiatic) and it is not naturally distributed in America. Furthermore, we found that America has more cryptic species within the Rubescentes clade than Eurasia.
{"title":"Downfall of an empire: Unmasking the hidden diversity and distribution of the <i>Amanita rubescens</i> species complex.","authors":"Christian A Quintero-Corrales, Melania Vega, Amaranta Ramírez-Terrazo, Bernardo Águila, Roberto Garibay-Orijel","doi":"10.1080/00275514.2024.2355276","DOIUrl":"10.1080/00275514.2024.2355276","url":null,"abstract":"<p><p><i>Amanita</i> is one of the most salient mushroom genera due to its cultural, economic, and medical importance. Recently, many new <i>Amanita</i> species have been described worldwide, increasing the genus richness. However, several clades have cryptic diversity, and many species complexes have not yet been resolved. This is the case of the rubescent species in the <i>Validae</i> section, which have been widely cited under the name <i>Amanita rubescens</i> s.l. We used a four-locus matrix (nuc rDNA internal transcribed spacer [ITS] and 28S regions and genes for RNA polymerase II subunit 2 [<i>rpb2</i>], translation elongation factor 1-α [<i>tef1-α</i>], and β-tubulin [<i>tub2</i>]) to solve the phylogenetic relationships within the <i>Amanita</i> section <i>Validae</i>. To analyze the diversity and distribution patterns of species, we used an extensive ITS sequence sampling including environmental DNA databases. The phylogenetic analyses demonstrated that the <i>Validae</i> section is divided into three monophyletic and highly supported major clades: <i>Mappae, Validae</i>, and <i>Rubescentes</i>. At least 11 species-level clades within the <i>Rubescentes</i> clade were highly supported: <i>A. cruentilemurum</i> nom. prov. <i>A. brunneolocularis, A. rubescens</i> s.s. (European clade), <i>A. rubescens</i> s.s. (Asiatic clade), <i>A. orsonii</i> s.s. <i>A</i>. '<i>orsonii</i>,' <i>A. aureosubucula</i> nom. prov., <i>A. novinupta, A. flavorubens</i>, and two undescribed North American species. We proved that <i>A. rubescens</i> s.s. has two segregated populations (European and Asiatic) and it is not naturally distributed in America. Furthermore, we found that America has more cryptic species within the <i>Rubescentes</i> clade than Eurasia.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"642-649"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141446541","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-08DOI: 10.1080/00275514.2024.2355337
Carlos A Salvador-Montoya, Genivaldo Alves-Silva, Thiago Kossmann, Felipe Bittencourt, Daniela Werner, Kelmer Martins-Cunha, Orlando F Popoff, Aristóteles Góes-Neto, Mario Rajchenberg, Elisandro R Drechsler-Santos
A new and threatened polypore species, Bondarzewia loguerciae, is described from the cloud forests of southern Brazil. It is characterized by single-pileate basidiomata that grow on dead branches and along living stems of standing trunks and present a context with dark lines and resinous tubes. When growing in axenic culture, this species also develops chlamydospores. We provide an illustrated morphological description and molecular analysis. Our specimens from Brazil form a monophyletic group among other species of the Southern Hemisphere. The conservation status of B. loguerciae is assessed and published as "Critically Endangered" based on the International Union for Conservation of Nature (IUCN) criteria. Additionally, a key to the species is provided.
{"title":"A new and threatened species of <i>Bondarzewia</i> from the Brazilian cloud forests.","authors":"Carlos A Salvador-Montoya, Genivaldo Alves-Silva, Thiago Kossmann, Felipe Bittencourt, Daniela Werner, Kelmer Martins-Cunha, Orlando F Popoff, Aristóteles Góes-Neto, Mario Rajchenberg, Elisandro R Drechsler-Santos","doi":"10.1080/00275514.2024.2355337","DOIUrl":"10.1080/00275514.2024.2355337","url":null,"abstract":"<p><p>A new and threatened polypore species, <i>Bondarzewia loguerciae</i>, is described from the cloud forests of southern Brazil. It is characterized by single-pileate basidiomata that grow on dead branches and along living stems of standing trunks and present a context with dark lines and resinous tubes. When growing in axenic culture, this species also develops chlamydospores. We provide an illustrated morphological description and molecular analysis. Our specimens from Brazil form a monophyletic group among other species of the Southern Hemisphere. The conservation status of <i>B. loguerciae</i> is assessed and published as \"Critically Endangered\" based on the International Union for Conservation of Nature (IUCN) criteria. Additionally, a key to the species is provided.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"775-791"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141559181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}