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Gene expression analysis for stem browning in the mushroom Lentinula edodes 香菇茎干褐变的基因表达分析
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-08-31 DOI: 10.47371/mycosci.2024.07.003
Jili Zhang, Yuki Tanaka, Akiko Ono, Takumi Sato, Toshiyuki Suzuki, Saya Akimoto, Yuki Tanaka, Shoko Iwami, Aya Iwamoto, Norio Tanaka, Naotake Konno, Tomohiro Suzuki

The mushroom Lentinula edodes, is consumed worldwide and has high industrial value because of its rich content of bioactive compounds such as ergothioneine and eritadenine. Currently, mainstream artificial cultivation methods for this mushroom typically use synthetic logs. However, browning of the stem’s interior (stem browning) has been observed during the cultivation in some L. edodes strains. Although browning does not affect the taste or other qualities of the mushroom, it gives consumers a perception of “poor quality”, and is a major challenge for producers. To identify the genes responsible for stem browning in this mushroom, we performed differential gene expression analysis during stem browning development and quantified it using real-time PCR. Our results indicated that certain oxidoreductases, such as tyrosinase and laccase, were significantly upregulated during the progression of stem browning. The results obtained in the present study provide valuable insights to address the problem of stem browning in mushroom L. edodes.

世界各地都在食用扁豆蘑菇,这种蘑菇因富含麦角硫因和麦角腺嘌呤等生物活性化合物而具有很高的工业价值。目前,这种蘑菇的主流人工栽培方法通常使用合成原木。不过,在一些香菇菌株的栽培过程中,已经观察到茎干内部变褐(茎干褐变)。虽然褐变不会影响蘑菇的口感或其他品质,但会给消费者一种 "质量差 "的感觉,这对生产者来说是一个重大挑战。为了确定导致这种蘑菇茎干褐变的基因,我们在茎干褐变过程中进行了差异基因表达分析,并使用实时 PCR 对其进行了量化。结果表明,在茎干褐变过程中,某些氧化还原酶(如酪氨酸酶和漆酶等)明显上调。本研究的结果为解决香菇茎干褐变问题提供了有价值的见解。
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引用次数: 0
Morphological responses of two Aspergillus oryzae strains to various metal ions at different concentrations 两种黑曲霉菌株对不同浓度的各种金属离子的形态学反应
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-08-23 DOI: 10.47371/mycosci.2024.04.001
Liyun Liu, Kanae Sakai, Takumi Tanaka, Ken-Ichi Kusumoto

Aspergillus species take up various metal ions from environment. The morphology of Aspergillus oryzae strains can vary under the influence of various metal ions. Here, the effects of Ti4+, V3+, Sr2+, Ba2+, Al3+, Fe2+, Zn2+, Mn2+, Ca2+, and Cu2+ on morphological parameters of A. oryzae strains RIB40 and RIB143 were estimated. Colony diameter, conidiation, vesicle head size, and stipe width in both strains varied with concentration. Ti4+, Sr2+, Ba2+, Al3+, Fe2+, and Ca2+ affected conidiation in similar tendency between two strains. The effects of Ti4+, V3+, Sr2+, and Ba2+ on the morphology of A. oryzae are reported here for the first time. Induction of growth of both strains by 0.0001% Ti4+ may help the fermentation industry. Induction of conidiation in RIB40 by 0.001% Cu2+ confirmed previous results that low concentrations of Cu2+ promote the growth of Aspergillus. The most novel finding is that 0.001% Zn2+ increased the vesicle head size in RIB40; possible reasons are discussed.

曲霉菌从环境中吸收各种金属离子。在各种金属离子的影响下,黑曲霉菌株的形态会发生变化。在此,研究人员估算了 Ti4+、V3+、Sr2+、Ba2+、Al3+、Fe2+、Zn2+、Mn2+、Ca2+ 和 Cu2+ 对 RIB40 和 RIB143 两株曲霉形态参数的影响。两种菌株的菌落直径、分生孢子数、液泡头大小和菌柄宽度随浓度的变化而变化。Ti4+、Sr2+、Ba2+、Al3+、Fe2+和Ca2+对两种菌株分生孢子的影响趋势相似。本文首次报道了 Ti4+、V3+、Sr2+ 和 Ba2+ 对 A. oryzae 形态的影响。0.0001% Ti4+ 对两种菌株生长的诱导作用可能有助于发酵工业。0.001% Cu2+ 对 RIB40 分生孢子的诱导作用证实了之前低浓度 Cu2+ 促进曲霉生长的结果。最新颖的发现是 0.001% Zn2+ 增加了 RIB40 的囊泡头大小;讨论了可能的原因。
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引用次数: 0
Leucoagaricus karjaticus (Agaricaceae), a new species from Maharashtra, India Leucoagaricus karjaticus(姬松茸科),印度马哈拉施特拉邦的一个新种
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-08-23 DOI: 10.47371/mycosci.2024.07.002
Prashant B. Patil, Nitinkumar P. Patil, Sunita Chahar, Satish Maurya

A new species, Leucoagaricus karjaticus, was described from the tropical region of the Western Ghats of Maharashtra, India based on morphological characteristics and molecular phylogenetic analysis. Leucoagaricus karjaticus is characterised by its yellowish brown to reddish brown granular scales on the pileus, stipe apex exudes colourless drops, broadly ellipsoid to ellipsoid to ovoid basidiospores, clavate to cylindrical, catenulate cheilocystidia with subglobose to cylindrical ante-terminal elements. Further, the molecular markers nrITS and nrLSU sequence data analyses of Leucoagaricus karjaticus with their sister taxa revealed the distinct phylogenetic position of the new species.

根据形态特征和分子系统学分析,描述了印度马哈拉施特拉邦西高止山热带地区的一个新物种--Leucoagaricus karjaticus。Leucoagaricus karjaticus 的特征是绒毛上有黄褐色至红褐色的颗粒状鳞片,柄先端渗出无色水滴,基部有宽椭圆形至椭圆形至卵球形的基生孢子,棒状至圆柱形、具近球形至圆柱形前端元件的柔荑花序螯囊。此外,分子标记 nrITS 和 nrLSU 序列数据分析显示,Leucoagaricus karjaticus 与它们的姊妹类群在系统发育上处于不同的位置。
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引用次数: 0
Henon bamboo flowering recorded first time in 120 years revealed how Aciculosporium take affects the floral organs of the host 120 年来首次记录的衡南竹开花揭示了 Aciculosporium 如何影响寄主的花器官
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-08-09 DOI: 10.47371/mycosci.2024.06.001
Eiji Tanaka, Joji Mochizuki

Flowering of Henon bamboo (Phyllostachys nigra var. henonis) was observed in Japan in 2020s. We estimated that the observation of flowering was recorded for the first time in 120 y. Additionally, stromata of Aciculosporium take have also been observed in the flower buds, or spikelets, of Henon bamboo. Aciculosporium take usually forms stromata at the vegetative shoot apex, which presumably originated from ancestral pathogens affecting floral tissues. However, given the infrequent occurrence of bamboo flowering events, it is unclear whether A. take still retains the ability to colonize ovaries of flowers. To ascertain the location where the fungus forms stromata, anatomical and histological analyses were performed. Because flower buds, including floral organs, are fragile, tissue sections were prepared by adhering them to cellophane tape, and subsequently examined using a triple fluorescent staining method. The findings showed that the fungus did not invade the ovaries but formed stromata from the apical rudimentary floret within the flower buds.

20 世纪 20 年代,日本观测到了楠竹(Phyllostachys nigra var.henonis)开花。此外,在楠竹的花蕾或小穗中也观察到了针孢子菌的基生体。Aciculosporium take 通常在无性繁殖的嫩枝先端形成分生孢子器,这可能源于影响花组织的祖先病原体。然而,由于竹子开花的情况并不常见,目前还不清楚竹疫霉菌是否仍具有在花的子房中定植的能力。为了确定真菌形成菌丝的位置,我们进行了解剖学和组织学分析。由于花蕾(包括花器官)很脆弱,因此将其粘在玻璃纸胶带上制备组织切片,然后使用三重荧光染色法进行检查。研究结果表明,真菌并没有侵入子房,而是在花蕾内的顶端不发育小花上形成了基生体。
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引用次数: 0
Phylogenetic classification and physiological and ecological traits of Metarhizium spp. Metarhizium spp.的系统发育分类和生理生态特征
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-08-01 DOI: 10.47371/mycosci.2024.07.001
Oumi Nishi

The genus Metarhizium (Hypocreales: Clavicipitaceae) is mostly composed of entomopathogenic fungal species. Many of these species are anamorphic and difficult to distinguish morphologically. Furthermore, most isolates of this genus have a broad host range, making classification based on host-insect species uncertain. Molecular phylogenetic analysis based on DNA sequence information distinguishes these species well and revises the taxonomy of Metarhizium. However, in the revisions, the major groups within the genus, such as M. anisopliae complex, were classified regardless of their phenotypic differentiation. Therefore, the characteristics of the individual species remain unclear. To explore the species-specific characteristics of Metarhizium spp., the author performed a phylogenetic analysis and characterization of Metarhizium spp. in Japan. The results showed that strains of the M. brunneum and M. pemphigi clades exhibited cold-active growth characteristics and preferred forested environments over M. pingshaense. In the M. majus clade, a specialist of scarab beetles, isolates from different Scarabaeidae species, including the coconut rhinoceros beetle (Oryctes spp.) and flower chafer beetle (Protaetia orientalis), formed separate subclades and showed strong virulence against their original hosts. This review describes the current state of understanding of the taxonomy and species-specific characteristics of the genus Metarhizium, and includes the author’s own previous study.

Metarhizium 属(Hypocreales: Clavicipitaceae)主要由昆虫病原真菌物种组成。其中许多菌种都是拟态的,在形态上很难区分。此外,该属的大多数分离物都有广泛的寄主范围,因此基于寄主昆虫种类的分类并不确定。基于 DNA 序列信息的分子系统发育分析很好地区分了这些种,并修订了 Metarhizium 的分类法。不过,在修订过程中,属内的主要类群(如 M. anisopliae complex)的分类与它们的表型差异无关。因此,单个种的特征仍不清楚。为了探索梅塔里兹菌属的物种特异性,作者对日本的梅塔里兹菌属进行了系统发育分析和特征描述。结果表明,M. brunneum 和 M. pemphigi 支系的菌株表现出冷活性生长特征,并且比 M. pingshaense 更喜欢森林环境。在M. majus支系(猩红甲虫的专性种)中,来自不同猩红甲虫物种(包括椰犀甲(Oryctes spp.)和花糠甲(Protaetia orientalis))的分离株形成了独立的亚支系,并对其原始宿主表现出很强的毒力。这篇综述描述了目前人们对拟黑僵菌属的分类和物种特异性特征的了解,其中包括作者自己以前的研究。
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引用次数: 0
Life cycle and mating compatibility in the Japanese white jelly mushroom, Tremella yokohamensis 日本白玉菇(Tremella yokohamensis)的生命周期和交配相容性
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-06-29 DOI: 10.47371/mycosci.2024.05.003
Nanthawan Kaeoniwong, Kozue Sotome, Tsuyoshi Ichiyanagi, Norihiro Shimomura, Tadanori Aimi

In this study, white jelly mushrooms that were collected in Tottori Prefecture, Japan, were identified as Tremella yokohamensis by phylogenetic analysis of the rDNA-ITS region. Fluorescent microscopic analysis using 4’,6-diamidino-2-phenylindole staining to visualize the nuclei in each cell revealed that basidiospores isolated from the fruiting body were monokaryotic. Furthermore, monokaryotic yeasts were germinated from these basidiospores and the resulting crossed mycelium was dikaryotic and bore clamp cells, suggesting a heterothallic lifecycle for this species. Crossing between compatible yeast strains, such as TUFC 101924 and TUFC 101925, that were isolated from the same fruiting body, successfully induced development of the filamentous stage bearing clamp connections after 7 d of incubation on Kagome vegetable juice agar medium. Mating compatibility tests employing 15 basidiospore isolates revealed that this fungus possess a bipolar mating system. The results indicated that T. yokohamensis is a heterothallic and bipolar mushroom.

本研究通过对 rDNA-ITS 区域进行系统发育分析,确定在日本鸟取县采集的白玉菇为横滨担子菌(Tremella yokohamensis)。利用 4',6-二脒基-2-苯基吲哚染色法对每个细胞的细胞核进行荧光显微分析后发现,从子实体中分离出的基原孢子是单核的。此外,单核酵母菌从这些基生孢子中发芽,产生的杂交菌丝是二核的,并带有钳形细胞,这表明该物种的生命周期是异型的。从同一子实体中分离出的相容酵母菌株(如 TUFC 101924 和 TUFC 101925)在卡哥美蔬菜汁琼脂培养基上培养 7 d 后,成功地诱导了带有钳状连接的丝状阶段的发育。利用 15 个基生孢子分离物进行的交配相容性测试表明,该真菌具有双极交配系统。结果表明,横滨蘑菇是一种异花双孢蘑菇。
{"title":"Life cycle and mating compatibility in the Japanese white jelly mushroom, Tremella yokohamensis","authors":"Nanthawan Kaeoniwong, Kozue Sotome, Tsuyoshi Ichiyanagi, Norihiro Shimomura, Tadanori Aimi","doi":"10.47371/mycosci.2024.05.003","DOIUrl":"https://doi.org/10.47371/mycosci.2024.05.003","url":null,"abstract":"</p><p>In this study, white jelly mushrooms that were collected in Tottori Prefecture, Japan, were identified as <i>Tremella yokohamensis</i> by phylogenetic analysis of the rDNA-ITS region. Fluorescent microscopic analysis using 4’,6-diamidino-2-phenylindole staining to visualize the nuclei in each cell revealed that basidiospores isolated from the fruiting body were monokaryotic. Furthermore, monokaryotic yeasts were germinated from these basidiospores and the resulting crossed mycelium was dikaryotic and bore clamp cells, suggesting a heterothallic lifecycle for this species. Crossing between compatible yeast strains, such as TUFC 101924 and TUFC 101925, that were isolated from the same fruiting body, successfully induced development of the filamentous stage bearing clamp connections after 7 d of incubation on Kagome vegetable juice agar medium. Mating compatibility tests employing 15 basidiospore isolates revealed that this fungus possess a bipolar mating system. The results indicated that <i>T. yokohamensis</i> is a heterothallic and bipolar mushroom.</p>\u0000<p></p>","PeriodicalId":18780,"journal":{"name":"Mycoscience","volume":"13 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141507896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A new species of Fusichalara (Sclerococcaceae, Eurotiomycetes) from Taiwan 来自台湾的 Fusichalara(硬球菌科,欧洲真菌)新种
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-06-29 DOI: 10.47371/mycosci.2024.05.002
Chang-Hsin Kuo, Sung-Yuan Hsieh, Teik-Khiang Goh

Fusichalara pallida sp. nov. is described from decaying wood submerged in a freshwater stream in Taiwan. The phylogenetic relationship of Fusichalara species was sought among representative taxa from related fungal lineages, namely the Chaetosphaeriales and Glomerellalles in the Sordariomycetes, and various other ordinal groups in the Eurotiomycetes, by comparing the concatenated ITS and LSU sequences of their nuc rDNA. The novel Fusichalara species from Taiwan clustered with F. minuta within the Sclerococcales besides other ordinal groups in the Eurotiomycetes. Morphologically, F. pallida is comparable with F. dimorphospora and F. novae-zelandiae in having long-cylindrical first-formed conidia and fusiform subsequent conidia with paler end cells, however, they differ in conidial dimensions. With the addition of this novel taxon, Fusichala now comprises seven species. A synopsis of these species and a composite illustration of their conidial morphology are given to ease identification.

Fusichalara pallida sp.通过比较 Fusichalara 的 nuc rDNA 的 ITS 和 LSU 序列,研究了 Fusichalara 与相关真菌系统中的代表类群(即 Sordariomycetes 中的 Chaetosphaeriales 和 Glomerellalles,以及 Eurotiomycetes 中的多个其他序群)之间的系统发生关系。来自台湾的 Fusichalara 新种与 F. minuta 聚类在硬球菌纲(Sclerococcales)和欧洲真菌纲(Eurotiomycetes)的其他序群中。在形态上,F. pallida 与 F. dimorphospora 和 F. novae-zelandiae 相似,都具有长圆柱形的初生分生孢子和纺锤形的后生分生孢子,其端胞颜色较浅,但它们的分生孢子尺寸不同。加入这个新分类群后,Fusichala 现在有 7 个种。为了便于识别,本文给出了这些物种的简介及其分生孢子形态的综合图解。
{"title":"A new species of Fusichalara (Sclerococcaceae, Eurotiomycetes) from Taiwan","authors":"Chang-Hsin Kuo, Sung-Yuan Hsieh, Teik-Khiang Goh","doi":"10.47371/mycosci.2024.05.002","DOIUrl":"https://doi.org/10.47371/mycosci.2024.05.002","url":null,"abstract":"</p><p><i>Fusichalara pallida</i> sp. nov. is described from decaying wood submerged in a freshwater stream in Taiwan. The phylogenetic relationship of <i>Fusichalara</i> species was sought among representative taxa from related fungal lineages, namely the <i>Chaetosphaeriales</i> and <i>Glomerellalles</i> in the <i>Sordariomycetes</i>, and various other ordinal groups in the Eurotiomycetes, by comparing the concatenated ITS and LSU sequences of their nuc rDNA. The novel <i>Fusichalara</i> species from Taiwan clustered with <i>F. minuta</i> within the <i>Sclerococcales</i> besides other ordinal groups in the <i>Eurotiomycetes</i>. Morphologically, <i>F. pallida</i> is comparable with <i>F. dimorphospora</i> and <i>F. novae-zelandiae</i> in having long-cylindrical first-formed conidia and fusiform subsequent conidia with paler end cells, however, they differ in conidial dimensions. With the addition of this novel taxon, <i>Fusichala</i> now comprises seven species. A synopsis of these species and a composite illustration of their conidial morphology are given to ease identification.</p>\u0000<p></p>","PeriodicalId":18780,"journal":{"name":"Mycoscience","volume":"187 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141507899","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lectotypification, epitypification, and molecular phylogenetic confirmation of Cytospora paulowniae comb. nov., a causal pathogen of Paulownia tree canker in Japan 日本泡桐树腐烂病病原菌泡桐胞孢菌(Cytospora paulowniae comb. nov.
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-06-05 DOI: 10.47371/mycosci.2024.02.006
Yukako Hattori, Hayato Masuya, Masato Torii, Toshizumi Miyamoto, Toshiyuki Koiwa, Chiharu Nakashima

Paulownia tree canker is a major disease of Paulowniae tomentosa in Japan. The pathogen was described as Valsa paulowniae in 1916 by Hemmi and Miyabe. However, its current taxonomic status and phylogenetic position are uncertain. In this study, we reviewed the protologue of this species and rediscovered the syntypes maintained at the Hokkaido University Museum (SAPA). From these specimens, a lectotype was selected. The molecular phylogenetic position of this species was examined with newly collected samples. Based on the result of phylogeny and morphology, an epitype of this species was designated and transferred to the genus Cytospora.

泡桐树腐烂病是日本泡桐的一种主要病害。1916 年,Hemmi 和 Miyabe 将病原体描述为 Valsa paulowniae。然而,其目前的分类地位和系统发育位置尚不确定。在这项研究中,我们回顾了该物种的原型,并重新发现了保存在北海道大学博物馆(SAPA)的同种异形标本。从这些标本中选出了一个主模式。我们利用新采集的样本对该物种的分子系统进化位置进行了研究。根据系统发育和形态学的结果,确定了该物种的一个外型,并将其归入 Cytospora 属。
{"title":"Lectotypification, epitypification, and molecular phylogenetic confirmation of Cytospora paulowniae comb. nov., a causal pathogen of Paulownia tree canker in Japan","authors":"Yukako Hattori, Hayato Masuya, Masato Torii, Toshizumi Miyamoto, Toshiyuki Koiwa, Chiharu Nakashima","doi":"10.47371/mycosci.2024.02.006","DOIUrl":"https://doi.org/10.47371/mycosci.2024.02.006","url":null,"abstract":"</p><p><i>Paulownia</i> tree canker is a major disease of <i>Paulowniae tomentosa</i> in Japan. The pathogen was described as <i>Valsa paulowniae</i> in 1916 by Hemmi and Miyabe. However, its current taxonomic status and phylogenetic position are uncertain. In this study, we reviewed the protologue of this species and rediscovered the syntypes maintained at the Hokkaido University Museum (SAPA). From these specimens, a lectotype was selected. The molecular phylogenetic position of this species was examined with newly collected samples. Based on the result of phylogeny and morphology, an epitype of this species was designated and transferred to the genus <i>Cytospora</i>.</p>\u0000<p></p>","PeriodicalId":18780,"journal":{"name":"Mycoscience","volume":"23 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141254956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A useful PCR primer set for the ectomycorrhizal fungus Tricholoma matsutake in wild pine rhizosphere based on the nuclear ribosomal DNA IGS2 sequence 基于核核糖体 DNA IGS2 序列的野生松树根瘤外生菌类松茸的实用 PCR 引物集
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-06-05 DOI: 10.47371/mycosci.2024.05.001
Hiroki Misawa, Yu Tateishi, Yuka Horimai, Aira Mizuno, Fuuma Hida, Hitoshi Furukawa, Hisayasu Kobayashi, Masataka Kawai, Takashi Yamanaka, Masaki Fukuda, Akiyoshi Yamada

Tricholoma matsutake is an edible ectomycorrhizal mushroom that forms a symbiotic association with Pinaceae trees by constructing a large extraradical mycelial area (called a shiro) in the soil. The detection of this fungal mycelium in the soil is crucial for estimating the success of outplanted mycorrhizal seedlings inoculated with T. matsutake under experimental conditions. Although several T. matsutake-specific DNA markers have been reported for efficient detection in the field, no comparative study has been conducted to assess their effectiveness. In the present study, we targeted the nuclear ribosomal DNA intergenic spacer 2 (IGS2) region for the detection of T. matsutake. The newly designed TmSP-I-2F/TmSP-I-2R primer pair, which targets a partial IGS2 sequence (543 bp), effectively detected T. matsutake from pine root and soil samples via PCR assay, outperforming other T. matsutake-specific primers. In combination with a PCR system targeting LTR DNA markers that were previously developed, a PCR system with the TmSP-I-2F/TmSP-I-2R primer pair set can expedite investigations of the dynamics of T. matsutake genets in mycorrhizas and shiro.

松茸是一种可食用的外生菌根蘑菇,它通过在土壤中构建一个大型根外菌丝区(称为 "shiro")与松科树木形成共生关系。检测土壤中的这种真菌菌丝对于评估在实验条件下接种松茸的外植菌根秧苗的成活率至关重要。虽然有报道称几种松茸特异性 DNA 标记可在田间有效检测松茸,但还没有进行过比较研究来评估它们的有效性。在本研究中,我们以核核糖体 DNA 基因间距 2(IGS2)区域为目标来检测松茸。新设计的 TmSP-I-2F/TmSP-I-2R 引物对以部分 IGS2 序列(543 bp)为目标,通过 PCR 分析从松树根和土壤样本中有效地检测出松茸,其效果优于其他松茸特异性引物。结合之前开发的针对 LTR DNA 标记的 PCR 系统,使用 TmSP-I-2F/TmSP-I-2R 引物对的 PCR 系统可以加快对松茸基因在菌根和石龙子中的动态研究。
{"title":"A useful PCR primer set for the ectomycorrhizal fungus Tricholoma matsutake in wild pine rhizosphere based on the nuclear ribosomal DNA IGS2 sequence","authors":"Hiroki Misawa, Yu Tateishi, Yuka Horimai, Aira Mizuno, Fuuma Hida, Hitoshi Furukawa, Hisayasu Kobayashi, Masataka Kawai, Takashi Yamanaka, Masaki Fukuda, Akiyoshi Yamada","doi":"10.47371/mycosci.2024.05.001","DOIUrl":"https://doi.org/10.47371/mycosci.2024.05.001","url":null,"abstract":"</p><p><i>Tricholoma matsutake</i> is an edible ectomycorrhizal mushroom that forms a symbiotic association with Pinaceae trees by constructing a large extraradical mycelial area (called a shiro) in the soil. The detection of this fungal mycelium in the soil is crucial for estimating the success of outplanted mycorrhizal seedlings inoculated with <i>T. matsutake</i> under experimental conditions. Although several <i>T. matsutake</i>-specific DNA markers have been reported for efficient detection in the field, no comparative study has been conducted to assess their effectiveness. In the present study, we targeted the nuclear ribosomal DNA intergenic spacer 2 (IGS2) region for the detection of <i>T. matsutake</i>. The newly designed TmSP-I-2F/TmSP-I-2R primer pair, which targets a partial IGS2 sequence (543 bp), effectively detected <i>T. matsutake</i> from pine root and soil samples via PCR assay, outperforming other <i>T. matsutake</i>-specific primers. In combination with a PCR system targeting LTR DNA markers that were previously developed, a PCR system with the TmSP-I-2F/TmSP-I-2R primer pair set can expedite investigations of the dynamics of <i>T. matsutake</i> genets in mycorrhizas and shiro.</p>\u0000<p></p>","PeriodicalId":18780,"journal":{"name":"Mycoscience","volume":"20 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141254954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Screening using loop-mediated isothermal amplification (LAMP) assay and breeding of a Saccharomyces cerevisiae strain isolated from Muramatsu Park, Japan, for sake brewing 利用环路介导等温扩增(LAMP)测定筛选和培育从日本村松公园分离出来的酿酒酵母菌株
IF 1.4 4区 生物学 Q4 MYCOLOGY Pub Date : 2024-05-31 DOI: 10.47371/mycosci.2024.04.002
Takashi Kuribayashi, Misaki Tsukada, Nanako Asahi, Shin-ichi Kai, Ken-ichi Abe, Mitsuoki Kaneoke, Tetsuya Oguma, Jyunji Kinebuchi, Tomoyuki Shigeno, Tomohito Sugiyama, Daisuke Kasai

Sake is a Japanese alcoholic beverage produced by fermenting steamed rice and koji (a culture of Aspergillus oryzae on steamed rice) with sake yeast, a strain of Saccharomyces cerevisiae. Sake yeast strains are important for maintaining product quality and process efficiency. In this study, a S. cerevisiae strain from Muramatsu Park, Gosen City, Niigata Prefecture was isolated using a loop-mediated isothermal amplification (LAMP) assay. The yeast strain was cultured using the mass spore-cell/cell-cell mating method with a sake yeast haploid. The resultant hybrid yeast strain, HG-3-F2, exhibited superior efficiency in alcoholic fermentation compared with the HG-3 strain. Our findings support the applicability of these original and mating strains in sake brewing.

清酒是日本的一种酒精饮料,由清酒酵母(一种酿酒酵母菌株)与蒸米和麴(蒸米上的一种曲霉培养物)一起发酵而成。清酒酵母菌株对保持产品质量和加工效率非常重要。在本研究中,采用环介导等温扩增(LAMP)法从新潟县五仙市村松公园分离出一株酿酒酵母菌株。用大量孢子细胞/细胞-细胞交配法培养了该酵母菌株与清酒酵母单倍体。由此产生的杂交酵母菌株 HG-3-F2 与 HG-3 菌株相比,在酒精发酵中表现出更高的效率。我们的研究结果支持这些原始菌株和交配菌株在清酒酿造中的应用。
{"title":"Screening using loop-mediated isothermal amplification (LAMP) assay and breeding of a Saccharomyces cerevisiae strain isolated from Muramatsu Park, Japan, for sake brewing","authors":"Takashi Kuribayashi, Misaki Tsukada, Nanako Asahi, Shin-ichi Kai, Ken-ichi Abe, Mitsuoki Kaneoke, Tetsuya Oguma, Jyunji Kinebuchi, Tomoyuki Shigeno, Tomohito Sugiyama, Daisuke Kasai","doi":"10.47371/mycosci.2024.04.002","DOIUrl":"https://doi.org/10.47371/mycosci.2024.04.002","url":null,"abstract":"</p><p>Sake is a Japanese alcoholic beverage produced by fermenting steamed rice and <i>koji</i> (a culture of <i>Aspergillus oryzae</i> on steamed rice) with sake yeast, a strain of <i>Saccharomyces cerevisiae</i>. Sake yeast strains are important for maintaining product quality and process efficiency. In this study, a <i>S. cerevisiae</i> strain from Muramatsu Park, Gosen City, Niigata Prefecture was isolated using a loop-mediated isothermal amplification (LAMP) assay. The yeast strain was cultured using the mass spore-cell/cell-cell mating method with a sake yeast haploid. The resultant hybrid yeast strain, HG-3-F2, exhibited superior efficiency in alcoholic fermentation compared with the HG-3 strain. Our findings support the applicability of these original and mating strains in sake brewing.</p>\u0000<p></p>","PeriodicalId":18780,"journal":{"name":"Mycoscience","volume":"138 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141190272","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Mycoscience
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