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A cognitive layer architecture to support large-language model performance in psychotherapy interactions 支持心理治疗互动中大语言模型表现的认知层架构
IF 82.9 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-12 DOI: 10.1038/s41591-026-04278-w
Max Rollwage, Jessica McFadyen, Keno Juchems, Annamaria Balogh, Sashank Pisupati, Margareta-Theodora Mircea, Tobias U. Hauser, George Prichard, Ross Harper
Clinician–patient conversations form the cornerstone of mental healthcare. Large language models (LLMs) could hold promise for this domain but their effectiveness in patient-facing interactions remains largely unproven. Here we introduce a cognitive layer architecture that enhances general-purpose LLMs with specialized clinical psychotherapeutic reasoning capabilities. In a randomized, double-blind evaluation, 227 human participants generated naturalistic mental well-being session transcripts by interacting with different therapy agents. A consortium of 22 expert clinicians assessed these transcripts, finding that LLMs augmented with this architecture consistently outperformed both standalone state-of-the-art LLMs and human clinicians across key clinical competencies required for delivering high-quality cognitive-behavioral therapy. We validated these results in an analysis of 19,674 transcripts from a large-scale, real-world deployment where an LLM embedded within this cognitive layer architecture was used as part of healthcare delivery to support 8,920 users seeking mental well-being assistance. Increased cognitive layer activation was associated with greater symptom improvement and a higher likelihood of long-term clinical recovery (~10 weeks). Our findings demonstrate that a cognitive layer architecture can enable LLMs to deliver high-quality cognitive-behavioral therapy interactions, with continued research warranted into mechanisms and clinical efficacy of AI-assisted therapeutics.
医患对话是精神卫生保健的基石。大型语言模型(llm)有望在这一领域发挥作用,但它们在面向患者的交互中的有效性在很大程度上仍未得到证实。在这里,我们介绍了一个认知层架构,增强了具有专门临床心理治疗推理能力的通用llm。在一项随机、双盲评估中,227名人类参与者通过与不同的治疗药物相互作用,产生了自然的心理健康会话记录。一个由22名专家临床医生组成的联盟评估了这些转录本,发现增强了这种架构的llm在提供高质量认知行为治疗所需的关键临床能力方面始终优于独立的最先进的llm和人类临床医生。我们对来自大规模实际部署的19674份转录本进行了分析,验证了这些结果,在该部署中,嵌入该认知层架构的LLM被用作医疗保健服务的一部分,以支持8,920名寻求心理健康帮助的用户。认知层激活的增加与更大的症状改善和更大的长期临床恢复可能性(~10周)相关。我们的研究结果表明,认知层架构可以使法学硕士能够提供高质量的认知-行为治疗相互作用,并继续研究人工智能辅助治疗的机制和临床疗效。
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引用次数: 0
A clinical environment simulator for dynamic AI evaluation. 用于动态人工智能评估的临床环境模拟器。
IF 82.9 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-12 DOI: 10.1038/s41591-026-04252-6
Luyang Luo,Sung Eun Kim,Xiaoman Zhang,Julius M Kernbach,Roshan Kenia,Julian N Acosta,Larry A Nathanson,Adrian D Haimovich,Adam Rodman,Ethan Goh,Jonathan H Chen,Nigam H Shah,David A Kim,James Zou,Faisal Mahmood,Jakob Nikolas Kather,Matthew Lungren,Vivek Natarajan,Eric J Topol,Pranav Rajpurkar
Clinical evaluation of large language models (LLMs) currently relies on static datasets and isolated scenarios that fail to capture the cascading effects of healthcare decisions. We propose the Clinical Environment Simulator (CES), a framework that evaluates clinical LLMs within digital hospital environments where every decision dynamically alters future states. The CES would use a parallel simulation architecture: a 'hospital engine' that tracks bed availability, staff workloads and equipment status in real time, and a 'patient engine' that simulates disease progression and treatment responses based on LLM interventions. Unlike current benchmarks, the CES framework requires clinical LLMs to execute decisions through realistic electronic health record interfaces, while managing trade-offs between individual patient optimization and system-wide efficiency. The CES enables three critical evaluations absent from current benchmarks: temporal reasoning under evolving constraints, where delayed diagnostics can lead to patient deterioration; resource-aware decision-making, where aggressive workups for one patient may exhaust capacity needed by others; and operational resilience, through adversarial testing with simultaneous emergencies and system failures. By scoring LLM performance on both clinical outcomes and operational metrics, the CES represents a shift toward evaluating clinical LLMs as a dynamic and integrated component of healthcare delivery systems.
大型语言模型(llm)的临床评估目前依赖于静态数据集和孤立的场景,无法捕捉医疗保健决策的级联效应。我们提出了临床环境模拟器(CES),这是一个评估数字医院环境中的临床法学硕士的框架,其中每个决策都会动态改变未来的状态。CES将使用并行模拟架构:实时跟踪床位可用性、员工工作量和设备状态的“医院引擎”,以及基于LLM干预模拟疾病进展和治疗反应的“患者引擎”。与目前的基准不同,CES框架要求临床法学硕士通过现实的电子健康记录接口执行决策,同时管理个体患者优化和系统范围效率之间的权衡。CES实现了当前基准所没有的三项关键评估:在不断变化的约束条件下的时间推理,其中延迟诊断可能导致患者病情恶化;资源意识决策,对一名患者进行积极的检查可能耗尽其他患者所需的能力;以及操作弹性,通过同时发生紧急情况和系统故障的对抗性测试。通过对法学硕士在临床结果和操作指标上的表现进行评分,CES代表了将临床法学硕士作为医疗保健服务系统的动态和集成组成部分进行评估的转变。
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引用次数: 0
A structure-based mRNA vaccine for Nipah virus in healthy adults: a phase 1 trial 健康成人尼帕病毒基于结构的mRNA疫苗:1期试验
IF 82.9 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-12 DOI: 10.1038/s41591-026-04265-1
Aurélie Ploquin, Rosemarie D. Mason, LaSonji A. Holman, Myra Happe, Alicia T. Widge, Laura Novik, Ana M. Ortega-Villa, Galina V. Yamshchikov, Ingelise J. Gordon, Abidemi Ola, Anita Arthur, Pamela J. M. Costner, Floreliz Mendoza, Jamie Saunders, Xioalin Wang, William R. Whalen, Joanna Utoh, Jennifer Cunningham, Lorin N. Loftus, Ashley Heimann, Katia Korzeniwsky, Shayne F. Andrew, Evan Lamb, Shruthi Shyam Sunder, Amelia Thompson, Mary McDonald, Kathryn E. Foulds, Nancy J. Sullivan, Jessica Bahorich, Emily E. Coates, Rebecca J. Loomis, Barney S. Graham, Karin Bok, Sunny Himansu, Brett Leav, Walla Dempsey, John H. Beigel, Mario Roederer, Lesia K. Dropulic, The VRC 322 study team
Nipah virus (NiV) is a highly pathogenic, zoonotic paramyxovirus with pandemic potential. No licensed vaccines or treatments are available. Therefore, we conducted a phase 1, first-in-human, open-label, dose-escalation trial of a lipid nanoparticle mRNA vaccine, mRNA-1215, encoding a chimeric pre-fusion F (Pre-F) protein linked to glycoprotein G of a NiV Malaysian strain. Forty healthy adults, who met eligibility criteria, were enrolled into the 10-, 25-, 50- or 100-μg dose groups with ten participants per group. Each participant received two doses of mRNA-1215, intramuscularly, at a 4-week interval except for one participant in the 10-μg dose group who received only the first dose. All participants remained in the study until their final study visit. The primary outcome of vaccine safety and tolerability was determined by prespecified end points: the frequency and severity of solicited local and systemic adverse events (AEs), unsolicited AEs, safety laboratory measures, medically attended AEs, AEs of special interest, new chronic medical conditions and serious AEs. The most frequently reported local and systemic AEs were mild pain and tenderness at the injection site (n  = 33; 82%) and mild malaise (n  = 16; 40%), respectively. Overall, the vaccine was well tolerated. No serious AEs occurred during the study. mRNA-1215 elicited robust Pre-F and G binding antibody titers, the prespecified secondary end points. An exploratory analysis found that mRNA-1215 elicited neutralizing titers by 2 weeks after the prime in all dose groups. Responses increased after the boost and remained elevated for at least 1 year after vaccination. These findings demonstrate an initial overall favorable safety profile and immunogenicity results for a first-in-human, structure-based, chimeric mRNA Nipah virus vaccine. mRNA-1215 is a promising vaccine candidate for continued clinical development for populations at risk for regional and potentially larger outbreaks caused by Nipah virus. ClinicalTrials.gov identifier: NCT05398796.
尼帕病毒是一种具有大流行潜力的高致病性人畜共患副粘病毒。目前尚无获得许可的疫苗或治疗方法。因此,我们对脂质纳米颗粒mRNA疫苗mRNA-1215进行了一项1期、首次人体、开放标签、剂量升级试验,该疫苗编码与NiV马来西亚菌株糖蛋白G相关的嵌合预融合F (Pre-F)蛋白。40名符合资格标准的健康成年人被纳入10、25、50或100 μg剂量组,每组10人。除了10 μg剂量组的一名参与者只接受第一剂外,每个参与者每隔4周接受两剂肌肉注射mRNA-1215。所有参与者在最后一次研究访问之前都一直在研究中。疫苗安全性和耐受性的主要结局由预先规定的终点确定:征求的局部和全身不良事件(ae)的频率和严重程度、非征求的ae、安全实验室措施、医疗参与的ae、特殊关注的ae、新的慢性疾病和严重ae。最常见的局部和全身ae分别是注射部位的轻度疼痛和压痛(n = 33, 82%)和轻度不适(n = 16, 40%)。总的来说,疫苗耐受性良好。研究期间未发生严重不良反应。mRNA-1215引发了强大的Pre-F和G结合抗体滴度,这是预先指定的次要终点。探索性分析发现,在所有剂量组中,mRNA-1215在启动后2周内都能引起中和效价。免疫应答在增强后增加,并在接种疫苗后至少1年内保持升高。这些发现证明了一种首次用于人体、基于结构的嵌合mRNA尼帕病毒疫苗的初步总体有利的安全性和免疫原性结果。mRNA-1215是一种有希望继续临床开发的候选疫苗,适用于面临尼帕病毒引起的区域性和可能更大规模暴发风险的人群。ClinicalTrials.gov识别码:NCT05398796。
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引用次数: 0
Antibiotic use and gut microbiome composition links from individual-level prescription data of 14,979 individuals. 14979名个体处方数据中的抗生素使用和肠道微生物组组成联系。
IF 82.9 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-11 DOI: 10.1038/s41591-026-04284-y
Gabriel Baldanzi,Anna Larsson,Sergi Sayols-Baixeras,Koen F Dekkers,Ulf Hammar,Diem Nguyen,Tíscar Graells,Shafqat Ahmad,Camila Gazolla Volpiano,Guillaume Meric,Josef D Järhult,Thomas Tängdén,Jonas F Ludvigsson,Lars Lind,Johan Sundström,Karl Michaëlsson,Johan Ärnlöv,Beatrice Kennedy,Marju Orho-Melander,Tove Fall
Disruptions in gut microbiome are implicated in cardiometabolic disorders and other health outcomes. Antibiotics are known gut microbiome disruptors, but their long-term consequences remain underexplored. Here we combined individual-level data from the Swedish Prescribed Drug Register with fecal metagenomes of 14,979 adults to examine the association between oral antibiotic use over 8 years and gut microbiome. In multivariable confounder-adjusted regression models, antibiotic use <1 year before fecal sampling was associated with the greatest reduction in species diversity, but significant associations were also observed for use 1-4 and 4-8 years earlier. Clindamycin, fluoroquinolones and flucloxacillin accounted for most of the associations with the abundance of individual species. Use of these antibiotics 4-8 years earlier was associated with altered abundance of 10-15% of the species studied; penicillin V, extended-spectrum penicillins and nitrofurantoin were associated with only a few species. Similar results were found comparing one antibiotic course 4-8 years before sampling versus none in the past 8 years. These findings indicate that antibiotics may have long-lasting consequences for the gut microbiome.
肠道微生物群的破坏与心脏代谢紊乱和其他健康结果有关。抗生素是已知的肠道微生物群破坏者,但其长期后果仍未得到充分研究。在这里,我们将来自瑞典处方药登记册的个人水平数据与14,979名成年人的粪便宏基因组相结合,以检查8年口服抗生素使用与肠道微生物组之间的关系。在多变量混杂校正回归模型中,在粪便取样前<1年使用抗生素与物种多样性的最大减少相关,但在1-4年和4-8年前使用抗生素也观察到显著关联。克林霉素、氟喹诺酮类药物和氟氯西林与个体物种丰度的关联最大。4-8年前使用这些抗生素与所研究物种中10-15%的丰度改变有关;青霉素V、广谱青霉素和呋喃妥英仅与少数种相关。在取样前4-8年的一个抗生素疗程与过去8年的无抗生素疗程比较发现了类似的结果。这些发现表明,抗生素可能对肠道微生物群产生长期影响。
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引用次数: 0
Blood phosphorylated tau elevation as a biomarker in immunoglobulin light chain and transthyretin amyloidosis. 血液磷酸化tau蛋白升高作为免疫球蛋白轻链和转甲状腺蛋白淀粉样变的生物标志物。
IF 82.9 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-11 DOI: 10.1038/s41591-026-04272-2
Stephan A Kaeser,Stephanie A Schultz,Anna Hofmann,Lisa M Häsler,Ying Xu,Marius Lambert,Ulrike Obermüller,Kathrin Brockmann,Johan Bijzet,Hans Nienhuis,Mario Nuvolone,Laura Obici,Giovanni Palladini,Ute Hegenbart,Stefan O Schönland,Mathias Jucker
Elevated blood levels of phosphorylated tau (p-tau) are diagnostic of Alzheimer disease and are associated with the deposition of amyloid-β in the cerebral neuropil. Elevated p-tau levels have also been associated with cerebral deposition of Danish amyloid and prion protein amyloid. Here we analyzed p-tau in serum from four different cohorts of people with the most common types of systemic amyloidosis, transthyretin (ATTR) amyloidosis and immunoglobulin light chain (AL) amyloidosis. We found higher levels of serum p-tau181 in the AL and ATTR groups than in controls. Subsequent analyses revealed that these effects were more pronounced in the presence of polyneuropathy (PNP) and in AL compared to ATTR amyloidosis. Individuals with different forms of PNP that were not due to amyloidosis did not exhibit elevated p-tau181 levels. In cases of presymptomatic (genetic) ATTR, p-tau181 levels increased as a function of predicted years from symptom onset. Additional measurement of p-tau217 in one cohort revealed similar increases, and discriminated people with AL and those with ATTR from controls equally as well as p-tau181. These findings suggest that elevated serum p-tau levels are not specific to Alzheimer disease and may also serve as a diagnostic tool of ATTR and AL amyloidosis, with potential utility in distinguishing amyloidosis-related PNP from PNP of other etiologies.
血液中磷酸化tau蛋白(p-tau)水平升高是阿尔茨海默病的诊断,并且与脑神经中淀粉样蛋白-β的沉积有关。升高的p-tau水平也与丹麦淀粉样蛋白和朊蛋白淀粉样蛋白的脑沉积有关。在这里,我们分析了四个不同队列中最常见的系统性淀粉样变性、甲状腺素转移型(ATTR)淀粉样变性和免疫球蛋白轻链型(AL)淀粉样变性患者血清中的p-tau。我们发现AL和ATTR组的血清p-tau181水平高于对照组。随后的分析显示,与ATTR淀粉样变相比,这些作用在多发性神经病变(PNP)和AL中更为明显。与淀粉样变无关的不同形式PNP个体没有表现出p-tau181水平升高。在症状前(遗传性)ATTR的病例中,p-tau181水平随着症状出现的预测年数的增加而增加。在一个队列中对p-tau217的额外测量显示了类似的增加,并将AL和ATTR患者与对照组以及p-tau181区分开来。这些发现表明,血清p-tau水平升高并不是阿尔茨海默病所特有的,也可能作为ATTR和AL淀粉样变的诊断工具,在区分淀粉样变相关的PNP和其他病因的PNP方面具有潜在的实用性。
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引用次数: 0
Author Correction: Global, regional, and national burden of chronic respiratory diseases and impact of the COVID-19 pandemic, 1990-2023: a Global Burden of Disease study. 作者更正:全球、区域和国家慢性呼吸道疾病负担和COVID-19大流行的影响,1990-2023:一项全球疾病负担研究
IF 82.9 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-11 DOI: 10.1038/s41591-026-04288-8
Jiyeon Oh,Soeun Kim,Yesol Yim,Min Seo Kim, ,Simon I Hay,Jae Il Shin,Dong Keon Yon
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引用次数: 0
Mosquito-borne viruses, vaccine-borne hope. 蚊子传播病毒,疫苗传播希望。
IF 5 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-09 DOI: 10.1038/d41591-026-00014-6
Mike May
{"title":"Mosquito-borne viruses, vaccine-borne hope.","authors":"Mike May","doi":"10.1038/d41591-026-00014-6","DOIUrl":"https://doi.org/10.1038/d41591-026-00014-6","url":null,"abstract":"","PeriodicalId":19037,"journal":{"name":"Nature Medicine","volume":" ","pages":""},"PeriodicalIF":50.0,"publicationDate":"2026-03-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147390513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microbiome modulation in cancer immunotherapy. 微生物组在癌症免疫治疗中的调节。
IF 5 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-09 DOI: 10.1038/s41591-026-04285-x
Sumanta K Pal, Diwakar Davar
{"title":"Microbiome modulation in cancer immunotherapy.","authors":"Sumanta K Pal, Diwakar Davar","doi":"10.1038/s41591-026-04285-x","DOIUrl":"https://doi.org/10.1038/s41591-026-04285-x","url":null,"abstract":"","PeriodicalId":19037,"journal":{"name":"Nature Medicine","volume":" ","pages":""},"PeriodicalIF":50.0,"publicationDate":"2026-03-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147390456","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of daily multivitamin-multimineral and cocoa extract supplementation on epigenetic aging clocks in the COSMOS randomized clinical trial. COSMOS随机临床试验中每日补充多种维生素-多种矿物质和可可提取物对表观遗传衰老时钟的影响
IF 82.9 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-09 DOI: 10.1038/s41591-026-04239-3
Sidong Li,Rikuta Hamaya,Haidong Zhu,Brian H Chen,Alexandre C Pereira,Kerry L Ivey,Pamela M Rist,JoAnn E Manson,Yanbin Dong,Howard D Sesso
Large-scale randomized trials have found that multivitamin-multimineral (MVM) supplements and cocoa flavanols may benefit several age-related chronic conditions among older adults, but it remains unclear whether these two supplements directly slow the biological aging process. This prespecified ancillary study evaluated the 2-year effect of a daily MVM (Centrum Silver) and cocoa extract (500 mg cocoa flavanols per day, including 80 mg (-)-epicatechin) on five DNA methylation measures of biological aging (PCHannum, PCHorvath, PCPhenoAge, PCGrimAge and DunedinPACE) among 958 participants (482 women and 476 men) in the COcoa Supplement and Multivitamin Outcomes Study (COSMOS). Compared with placebo, daily MVM supplementation modestly reduced the rate of increase of second-generation epigenetic clocks, with a between-group difference in yearly change of -0.113 years (95% confidence interval (CI) -0.205 to -0.020; P = 0.017) for PCGrimAge and -0.214 years (-0.410 to -0.019; P = 0.032) for PCPhenoAge. MVM had a stronger effect on PCGrimAge among those with accelerated biological aging at baseline (-0.236 [-0.380 to -0.091]) compared with those with normal or decelerated biological aging (-0.013 [-0.130 to 0.104]; P = 0.018 for interaction). Cocoa extract did not have an effect on the five epigenetic clocks tested. Although the statistically significant but small effects of daily MVM supplementation on slowing biological aging are encouraging, additional studies are needed to determine the clinical relevance of daily MVM supplementation on epigenetic clocks and whether such effects can help explain the beneficial effects of MVM supplementation on aging-related chronic conditions.
大规模随机试验发现,多种维生素-多种矿物质(MVM)补充剂和可可黄烷醇可能对老年人的几种与年龄有关的慢性疾病有益,但目前尚不清楚这两种补充剂是否能直接减缓生物衰老过程。这项预先指定的辅助研究在可可补充剂和多种维生素结局研究(COSMOS)中评估了958名参与者(482名女性和476名男性)每天服用MVM (Centrum Silver)和可可提取物(每天500毫克可可黄烷醇,包括80毫克(-)-表儿茶素)对生物衰老的五种DNA甲基化测量(PCHannum, PCHorvath, PCPhenoAge, PCGrimAge和DunedinPACE)的2年效果。与安慰剂相比,每日补充MVM可适度降低第二代表观遗传时钟的增长率,组间年变化差异为-0.113年(95%可信区间(CI) -0.205至-0.020;P = 0.017), PCPhenoAge为-0.214年(-0.410 ~ -0.019;P = 0.032)。MVM对PCGrimAge的影响在基线生物衰老加速组(-0.236[-0.380 ~ -0.091])比正常或减缓生物衰老组(-0.013[-0.130 ~ 0.104];相互作用P = 0.018)更强。可可提取物对测试的五种表观遗传时钟没有影响。虽然每日补充MVM对减缓生物衰老的统计学意义显著但效果甚微,但需要进一步的研究来确定每日补充MVM对表观遗传时钟的临床相关性,以及这种效果是否有助于解释补充MVM对衰老相关慢性疾病的有益作用。
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引用次数: 0
A daily multivitamin slows the ticking of epigenetic clocks. 每天服用多种维生素可以减缓表观遗传时钟的滴答声。
IF 82.9 1区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-09 DOI: 10.1038/s41591-026-04249-1
Daniel W Belsky,Calen P Ryan
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引用次数: 0
期刊
Nature Medicine
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