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Exploiting cell cycle-dependent dephosphorylation for mitosis-specific protein recruitment 利用细胞周期依赖性去磷酸化实现有丝分裂特异性蛋白质招募
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-20 DOI: 10.1038/s41580-024-00808-x
Xiaofu Cao
In this Tools of the Trade article, Cao (Baskin lab) discusses the development of MARS, which enables mitosis-specific recruitment of enzymes to the plasma membrane, exploiting the cell cycle’s natural regulation of PLEKHA5 phosphorylation.
在这篇 "贸易工具"(Tools of the Trade)文章中,Cao(Baskin 实验室)讨论了 MARS 的开发过程,MARS 利用细胞周期对 PLEKHA5 磷酸化的自然调控,实现了有丝分裂特异性地将酶招募到质膜上。
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引用次数: 0
Paleoproteomics sheds light on million-year-old fossils 古蛋白质组学揭示百万年前化石的奥秘
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-19 DOI: 10.1038/s41580-024-00803-2
Ryan Sinclair Paterson, Palesa Petunia Madupe, Enrico Cappellini
It is now well established that ancient proteins endure, and remain informative, much longer than DNA. Accordingly, sequencing of ancient proteins is currently the only viable methodology for retrieving the genetic data required to resolve evolutionary relations between vertebrate species that disappeared millions of years ago. Ancient proteins can provide phylogenetic information at a timescale that supersedes ancient DNA. Paleoproteomics could thus provide invaluable evolutionary insights, including into human evolution.
目前已经确定的是,远古蛋白质的存续时间和信息量远远超过 DNA。因此,对古蛋白质进行测序是目前唯一可行的方法,可用于检索解决数百万年前消失的脊椎动物物种之间进化关系所需的遗传数据。古蛋白质能够以超越古 DNA 的时间尺度提供系统发育信息。因此,古蛋白质组学可以提供宝贵的进化见解,包括对人类进化的见解。
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引用次数: 0
Connecting cells through TNT 通过 TNT 连接细胞
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-18 DOI: 10.1038/s41580-024-00811-2
Lisa Heinke
Tunnelling nanotubes, which are actin-based protrusions different from filopodia and cytokinetic bridges, connect cells in the zebrafish embryo, enabling the transport of proteins and organelles.
隧穿纳米管是不同于丝状体和细胞运动桥的肌动蛋白突起,它连接着斑马鱼胚胎中的细胞,使蛋白质和细胞器的运输成为可能。
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引用次数: 0
RNA communication between organisms inspires innovative eco-friendly strategies for disease control 生物体之间的 RNA 通信激发了创新的生态友好型疾病控制策略
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-15 DOI: 10.1038/s41580-024-00807-y
Rachael Hamby, Qiang Cai, Hailing Jin
Evidence shows that RNA trafficking is a key communication mechanism across kingdoms and species, but how RNAs are secreted and trafficked and how they function within the recipient organisms remain unclear. Here, we discuss how understanding inter-organismal RNA communication can assist in disease management in both agriculture and medicine. Cross-species host–pathogen or mutualistic RNA communication, especially through extracellular vesicles, can have important applications, including gene silencing in agriculture and RNA-based therapeutics.
有证据表明,RNA 贩运是跨物种和跨王国的一种关键交流机制,但 RNA 如何分泌和贩运以及它们如何在受体生物体内发挥作用仍不清楚。在此,我们将讨论了解生物体间的 RNA 交流如何有助于农业和医学领域的疾病管理。跨物种的宿主-病原体或互利的 RNA 通信,尤其是通过胞外囊泡进行的通信,可以有重要的应用价值,包括农业中的基因沉默和基于 RNA 的疗法。
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引用次数: 0
Grand roles for microproteins 微蛋白的巨大作用
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-14 DOI: 10.1038/s41580-024-00806-z
Valerie A. Tornini
Valerie Tornini discusses two studies that identified functional roles for small proteins encoded by short open reading frames, and highlights the potential for this research field in fundamental and clinical research.
Valerie Tornini 讨论了两项发现短开放阅读框编码的小蛋白功能作用的研究,并强调了这一研究领域在基础和临床研究中的潜力。
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引用次数: 0
The intraflagellar transport cycle 叶栅内运输循环
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-13 DOI: 10.1038/s41580-024-00797-x
Samuel E. Lacey, Gaia Pigino

Primary and motile cilia are eukaryotic organelles that perform crucial roles in cellular signalling and motility. Intraflagellar transport (IFT) contributes to the formation of the highly specialized ciliary proteome by active and selective transport of soluble and membrane proteins into and out of cilia. IFT is performed by the IFT-A and IFT-B protein complexes, which together link cargoes to the microtubule motors kinesin and dynein. In this Review, we discuss recent structural and mechanistic insights on how the IFT complexes are first recruited to the base of the cilium, how they polymerize into an anterograde IFT train, and how this complex imports cargoes from the cytoplasm. We will describe insights into how kinesin-driven anterograde trains are carried to the ciliary tip, where they are remodelled into dynein-driven retrograde trains for cargo export. We will also present how the interplay between IFT-A and IFT-B complexes, motor proteins and cargo adaptors is regulated for bidirectional ciliary transport.

原生纤毛和运动纤毛是真核生物的细胞器,在细胞信号和运动中发挥着至关重要的作用。纤毛内运输(IFT)通过主动和选择性地将可溶性蛋白和膜蛋白运入和运出纤毛,促进了高度特化的纤毛蛋白质组的形成。IFT由IFT-A和IFT-B蛋白复合物完成,它们共同将货物与微管马达驱动蛋白和动力蛋白连接起来。在这篇综述中,我们将讨论最新的结构和机理研究成果,这些成果涉及 IFT 复合物如何首先被招募到纤毛基部,它们如何聚合成一个前向 IFT 列车,以及这一复合物如何从细胞质中输入货物。我们将介绍如何将驱动蛋白驱动的前向列车带至纤毛顶端,并在那里将其重塑为动力蛋白驱动的逆向列车,以输出货物。我们还将介绍如何调节 IFT-A 和 IFT-B 复合物、马达蛋白和货物适配器之间的相互作用,以实现睫状体的双向运输。
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引用次数: 0
Author Correction: All the sites we cannot see: Sources and mitigation of false negatives in RNA modification studies 作者更正:所有我们看不见的地方RNA 修饰研究中假阴性的来源与缓解
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-12 DOI: 10.1038/s41580-024-00810-3
Shalini Oberdoerffer, Wendy V. Gilbert

Correction to: Nature Reviews Molecular Cell Biology https://doi.org/10.1038/s41580-024-00784-2, published online 21 October 2024.

更正为Nature Reviews Molecular Cell Biology https://doi.org/10.1038/s41580-024-00784-2,2024 年 10 月 21 日在线发表。
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引用次数: 0
Transcription regulation by biomolecular condensates 生物分子凝聚体的转录调控
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-08 DOI: 10.1038/s41580-024-00789-x
Gaofeng Pei, Heankel Lyons, Pilong Li, Benjamin R. Sabari

Biomolecular condensates regulate transcription by dynamically compartmentalizing the transcription machinery. Classic models of transcription regulation focus on the recruitment and regulation of RNA polymerase II by the formation of complexes at the 1–10 nm length scale, which are driven by structured and stoichiometric interactions. These complexes are further organized into condensates at the 100–1,000 nm length scale, which are driven by dynamic multivalent interactions often involving domain–ligand pairs or intrinsically disordered regions. Regulation through condensate-mediated organization does not supersede the processes occurring at the 1–10 nm scale, but it provides regulatory mechanisms for promoting or preventing these processes in the crowded nuclear environment. Regulation of transcription by transcriptional condensates is involved in cell state transitions during animal and plant development, cell signalling and cellular responses to the environment. These condensate-mediated processes are dysregulated in developmental disorders, cancer and neurodegeneration. In this Review, we discuss the principles underlying the regulation of transcriptional condensates, their roles in physiology and their dysregulation in human diseases.

生物分子凝聚体通过动态分隔转录机制来调控转录。转录调控的经典模型侧重于 RNA 聚合酶 II 的招募和调控,方法是在 1-10 nm 长度范围内形成复合物,由结构化和化学计量的相互作用驱动。这些复合物在 100-1,000 纳米长度范围内进一步组织成凝聚体,凝聚体由动态多价相互作用驱动,通常涉及结构域配体对或内在无序区。通过凝聚物介导的组织调控并不能取代 1-10 纳米尺度的过程,但它提供了在拥挤的核环境中促进或阻止这些过程的调控机制。转录凝聚物对转录的调控参与了动物和植物发育过程中的细胞状态转换、细胞信号传递和细胞对环境的反应。这些凝聚物介导的过程在发育障碍、癌症和神经退行性病变中出现失调。在这篇综述中,我们将讨论转录凝聚态调控的基本原理、它们在生理学中的作用以及它们在人类疾病中的失调。
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引用次数: 0
Homeostasis control in health and disease by the unfolded protein response 未折叠蛋白反应对健康和疾病的平衡控制
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-05 DOI: 10.1038/s41580-024-00794-0
Diego Acosta-Alvear, Jonathan M. Harnoss, Peter Walter, Avi Ashkenazi

Cells rely on the endoplasmic reticulum (ER) to fold and assemble newly synthesized transmembrane and secretory proteins — essential for cellular structure–function and for both intracellular and intercellular communication. To ensure the operative fidelity of the ER, eukaryotic cells leverage the unfolded protein response (UPR) — a stress-sensing and signalling network that maintains homeostasis by rebalancing the biosynthetic capacity of the ER according to need. The metazoan UPR can also redirect signalling from cytoprotective adaptation to programmed cell death if homeostasis restoration fails. As such, the UPR benefits multicellular organisms by preserving optimally functioning cells while removing damaged ones. Nevertheless, dysregulation of the UPR can be harmful. In this Review, we discuss the UPR and its regulatory processes as a paradigm in health and disease. We highlight important recent advances in molecular and mechanistic understanding of the UPR that enable greater precision in designing and developing innovative strategies to harness its potential for therapeutic gain. We underscore the rheostatic character of the UPR, its contextual nature and critical open questions for its further elucidation.

细胞依靠内质网(ER)来折叠和组装新合成的跨膜和分泌蛋白--这些蛋白对细胞结构-功能以及细胞内和细胞间的通讯都至关重要。为了确保ER的工作可靠性,真核细胞利用了未折叠蛋白反应(UPR)--一个压力传感和信号网络,通过根据需要重新平衡ER的生物合成能力来维持平衡。如果平衡恢复失败,元古动物的 UPR 还能将信号从细胞保护适应重新定向到程序性细胞死亡。因此,UPR 能在清除受损细胞的同时保留功能最佳的细胞,从而造福于多细胞生物。然而,UPR 的失调可能有害。在这篇综述中,我们将讨论作为健康和疾病范例的 UPR 及其调控过程。我们强调了最近在对 UPR 的分子和机理理解方面取得的重要进展,这些进展使我们能够更精确地设计和开发创新策略,以利用其治疗潜力。我们强调了 UPR 的流变特性、其背景性质以及有待进一步阐明的关键开放问题。
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引用次数: 0
Epigenetic discovery by enzyme activity profiling 通过酶活性分析发现表观遗传学
IF 112.7 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-10-25 DOI: 10.1038/s41580-024-00801-4
Manini S. Penikalapati, Jordan L. Meier
C. David Allis’s discovery of the first histone acetyltransferase from Tetrahymena exemplifies an approach that continues to evolve and now has a crucial role in drug development.
C.戴维-阿里斯从四膜虫中发现了第一个组蛋白乙酰转移酶,这一发现体现了一种不断发展的方法,如今它在药物开发中发挥着至关重要的作用。
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引用次数: 0
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Nature Reviews Molecular Cell Biology
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